Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 59 of 378
Found at i:15014260 original size:22 final size:21
Alignment explanation
Indices: 15014211--15014249 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15014201 GTTGAAATAG
15014211 AATG-TAA-AAATAATTTAAA
1 AATGATAATAAATAATTTAAA
15014230 AATGATAATAAATGAATTTA
1 AATGATAATAAAT-AATTTA
15014250 TAACATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 4 0.24
22 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AATGATAATAAATAATTTAAA
Found at i:15014716 original size:18 final size:19
Alignment explanation
Indices: 15014675--15014719 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
15014665 TAGTATGATG
*
15014675 ATAATAAT-AATAGAAGTA
1 ATAATAATAAATACAAGTA
*
15014693 ACAATAATAAATACAA-TA
1 ATAATAATAAATACAAGTA
15014711 ATAATAATA
1 ATAATAATA
15014720 TAAAAATGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (19 bp):
ATAATAATAAATACAAGTA
Found at i:15015376 original size:16 final size:16
Alignment explanation
Indices: 15015355--15015385 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15015345 TTTTAAGGAA
15015355 AAATAAAGAAAAAAAT
1 AAATAAAGAAAAAAAT
*
15015371 AAATAAATAAAAAAA
1 AAATAAAGAAAAAAA
15015386 AAGAAAACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (16 bp):
AAATAAAGAAAAAAAT
Found at i:15022701 original size:2 final size:2
Alignment explanation
Indices: 15022694--15022729 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
15022684 TTCAATACAG
15022694 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15022730 GCAAGCTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15027693 original size:32 final size:33
Alignment explanation
Indices: 15027626--15027693 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 33
15027616 GTTTATTAAA
* * *
15027626 TTAATGTTTATGGTTTTTTTATTTTTTAAGTGT
1 TTAATGTTTAGGGTTTTTTTATTTATTAAGGGT
15027659 TTAA-GTTTAGGGTTTTATTTATTTATT-AGGGT
1 TTAATGTTTAGGGTTTT-TTTATTTATTAAGGGT
15027691 TTA
1 TTA
15027694 GCGGTTCTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (33 bp):
TTAATGTTTAGGGTTTTTTTATTTATTAAGGGT
Found at i:15031530 original size:19 final size:20
Alignment explanation
Indices: 15031500--15031543 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
15031490 AATTATGAAA
15031500 TAAAAAACTTTAAAAATTT-T
1 TAAAAAACTTT-AAAATTTAT
15031520 TAAAAAA-TTTAAAATTTAT
1 TAAAAAACTTTAAAATTTAT
15031539 TAAAA
1 TAAAA
15031544 TTTATTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.30
19 9 0.39
20 7 0.30
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAAAACTTTAAAATTTAT
Found at i:15045466 original size:18 final size:17
Alignment explanation
Indices: 15045443--15045486 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
15045433 TTTTTAAAAA
15045443 TATAAATTGTT-GAATTTT
1 TATAAATT-TTAG-ATTTT
15045461 TATAAATATTTAGATTTT
1 TATAAAT-TTTAGATTTT
15045479 TATAAATT
1 TATAAATT
15045487 AATTTGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 1 0.04
18 21 0.88
19 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TATAAATTTTAGATTTT
Found at i:15045497 original size:18 final size:18
Alignment explanation
Indices: 15045456--15045498 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
15045446 AAATTGTTGA
15045456 ATTTTTATAAATATTTAG
1 ATTTTTATAAATATTTAG
15045474 ATTTTTATAAATTAATTT-G
1 ATTTTTATAAA-T-ATTTAG
15045493 ATTTTT
1 ATTTTT
15045499 TTTGAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.48
19 8 0.35
20 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
ATTTTTATAAATATTTAG
Found at i:15046862 original size:503 final size:503
Alignment explanation
Indices: 15045904--15046906 Score: 1745
Period size: 503 Copynumber: 2.0 Consensus size: 503
15045894 GCGCTTAGGG
* * * *
15045904 AGGATGTGGTGCATCCGATGAGGGATTGCTTTGTGTCCTTTAAGGCATTGAGAAAGTAAGAATTA
1 AGGATGCGGTGCATACGATGAGGGATTGCTTTGTGTCCTTTAAGGCATTAAGAAAGTAAAAATTA
* *
15045969 TCTCTAAGAAAGTAAAAAGTATGCATTTTGATTTTTTTCATCTATATTTTGATTTGACACCTTAT
66 TCTCTAAGAAAGTAAAAAGTATGCATTTTGATTTTTTTCATCTATATCTTGATTTGACACATTAT
15046034 CTTACCTCATAGGCTACGACTTGTTCGATGAAAAGTGCAAAAGGAAAATGTGATGAAGATTAATA
131 CTTACCTCATAGGCTACGACTTGTTCGATGAAAAGTGCAAAAGGAAAATGTGATGAAGATTAATA
* * * *
15046099 CAAATGGAGCCTTTGATGAGCAAGATCAAGCTGATCTTTTGGGCATGTTGGTGAAGGACAGTAAT
196 CAAATGAAGCCTTTGATGAGCAAGATCAAGCTGACCTCTTAGGCATGTTGGTGAAGGACAGTAAT
* *
15046164 GGATTGGTAGTAGAAGTTTGTGCACATCTAAGCGTAGAGTGTGATGTGTGTAAATATGATGGATA
261 GGATTGGTAGTAGAAGTTTGTGCACATCTAAGCGTAGAGTGTGATGTGTGCAAATATGATAGATA
*
15046229 CTTGTGCAAATATTGTGGGCTTCAGTATGTGCTTGATCAATGCTTTGTCGGTGTTGTTATTGAAA
326 CTTGTGCAAATATTGTGGGCTTCAGTATGTGCTTGATCAATGCTTTGACGGTGTTGTTATTGAAA
* * *
15046294 CTTATGCATATTGCCTGATCATTAAGCTTTAACAATATTCAATGGATTTTACTTTGTTTGGTCTT
391 CTTATGCATATTGCATGATCATTAAGCTTTAACAATATTCAATAGATTTTACTTTGTTCGGTCTT
*
15046359 CTTCTAAAAGAGGTTTAGTCTTTAGTTTTAAATTTAGGTAAACTATAA
456 CTTCTAAAAGAGGTTTAGTCTTTAGATTTAAATTTAGGTAAACTATAA
* *
15046407 AGGATGCGGTGCATACGATGAGGGGTTGTTTTGTGTCCTTTAAGGCATTAAGAAAGTAAAAATTA
1 AGGATGCGGTGCATACGATGAGGGATTGCTTTGTGTCCTTTAAGGCATTAAGAAAGTAAAAATTA
* * *
15046472 TCTCTAAGAAAGTAAGAAGTATGCATTTTGATTTTTTTTATTTATATCTTGATTTGACACATTAT
66 TCTCTAAGAAAGTAAAAAGTATGCATTTTGATTTTTTTCATCTATATCTTGATTTGACACATTAT
15046537 CTTACCTCATAGGCTACGACTTGTTCGATGAAAAGTGCAAAAGGAAAATGTGATGAAGATTAATA
131 CTTACCTCATAGGCTACGACTTGTTCGATGAAAAGTGCAAAAGGAAAATGTGATGAAGATTAATA
* *
15046602 CAAATGAAGCCTTTGATGAGCAAGATTAGGCTGACCTCTTAGGCATGTTGGTGAAGGACAGTAAT
196 CAAATGAAGCCTTTGATGAGCAAGATCAAGCTGACCTCTTAGGCATGTTGGTGAAGGACAGTAAT
* * *
15046667 GGATTGGTGGTAGAAGTTTGTGCACATCTAAGCGTAGGGTGTGATGTGTGCAAATATGGTAGATA
261 GGATTGGTAGTAGAAGTTTGTGCACATCTAAGCGTAGAGTGTGATGTGTGCAAATATGATAGATA
* *
15046732 CTTGTGCAATTATTGTGGGCTTCAGTATGTGCTTGATCGATGCTTTGACGGTGTTGTTATTGAAA
326 CTTGTGCAAATATTGTGGGCTTCAGTATGTGCTTGATCAATGCTTTGACGGTGTTGTTATTGAAA
15046797 CTTATGCATATTGCATGATCATTAAGCTTTAACAATATTCAATAGATTTTACTTTGTTCGGTCTT
391 CTTATGCATATTGCATGATCATTAAGCTTTAACAATATTCAATAGATTTTACTTTGTTCGGTCTT
15046862 CTTCTAAAAGAGGTTTAGTCTTTAGATTTAAATTTAGGTAAACTA
456 CTTCTAAAAGAGGTTTAGTCTTTAGATTTAAATTTAGGTAAACTA
15046907 CACCATAGTC
Statistics
Matches: 471, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
503 471 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (503 bp):
AGGATGCGGTGCATACGATGAGGGATTGCTTTGTGTCCTTTAAGGCATTAAGAAAGTAAAAATTA
TCTCTAAGAAAGTAAAAAGTATGCATTTTGATTTTTTTCATCTATATCTTGATTTGACACATTAT
CTTACCTCATAGGCTACGACTTGTTCGATGAAAAGTGCAAAAGGAAAATGTGATGAAGATTAATA
CAAATGAAGCCTTTGATGAGCAAGATCAAGCTGACCTCTTAGGCATGTTGGTGAAGGACAGTAAT
GGATTGGTAGTAGAAGTTTGTGCACATCTAAGCGTAGAGTGTGATGTGTGCAAATATGATAGATA
CTTGTGCAAATATTGTGGGCTTCAGTATGTGCTTGATCAATGCTTTGACGGTGTTGTTATTGAAA
CTTATGCATATTGCATGATCATTAAGCTTTAACAATATTCAATAGATTTTACTTTGTTCGGTCTT
CTTCTAAAAGAGGTTTAGTCTTTAGATTTAAATTTAGGTAAACTATAA
Found at i:15047115 original size:2 final size:2
Alignment explanation
Indices: 15047110--15047135 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15047100 AGAGATTCTC
15047110 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15047136 TGAATCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15047374 original size:2 final size:2
Alignment explanation
Indices: 15047369--15047400 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15047359 GTAAAAAAAA
15047369 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15047401 TATTATTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15055928 original size:23 final size:23
Alignment explanation
Indices: 15055900--15055947 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
15055890 TCTCATTCAA
15055900 TTTCTCATATATATACACACAAT
1 TTTCTCATATATATACACACAAT
*
15055923 TTTCTCATATATATATACACAAT
1 TTTCTCATATATATACACACAAT
15055946 TT
1 TT
15055948 CACGTTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTCTCATATATATACACACAAT
Found at i:15056534 original size:42 final size:42
Alignment explanation
Indices: 15056471--15056597 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
15056461 CTTCGTTTTC
** * *
15056471 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
15056514 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
15056555 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
15056596 TC
1 TC
15056598 TCACTGATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 10 0.13
42 63 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:15056624 original size:46 final size:47
Alignment explanation
Indices: 15056556--15056675 Score: 116
Period size: 47 Copynumber: 2.6 Consensus size: 47
15056546 ATTCATATAT
* * * * *
15056556 CGATGCCATAGCCTAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATACCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * * * *
15056602 TGATGCCATATCCCAGATATGGTATTATACAGTAGCATATATCACAC
1 CGATGCCATACCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* *
15056649 CGATTCCATACCCCAAATATGGTCTTA
1 CGATGCCATACCCCAGATATGGTCTTA
15056676 TACGGAAATC
Statistics
Matches: 58, Mismatches: 15, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
46 24 0.41
47 34 0.59
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (47 bp):
CGATGCCATACCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:15056732 original size:31 final size:31
Alignment explanation
Indices: 15056697--15056875 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
15056687 CTTGTCACTT
*
15056697 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
15056728 GTAGCCGGAGCTACCATTTTTCACTGAT-AG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
15056758 GTAGCAGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
15056789 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
15056820 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
15056851 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
15056876 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
30 31 0.23
31 103 0.76
32 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:15056792 original size:61 final size:62
Alignment explanation
Indices: 15056697--15056875 Score: 288
Period size: 61 Copynumber: 2.9 Consensus size: 62
15056687 CTTGTCACTT
* * *
15056697 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGAT-AG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
15056758 GTAGCAGGAGCTACCACTTTTCACTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
15056820 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACT
15056876 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
61 54 0.50
62 54 0.50
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (62 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:15056957 original size:50 final size:51
Alignment explanation
Indices: 15056851--15056979 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
15056841 CACTGATCAG
* * * **
15056851 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTTTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
15056902 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCCTTGATCAGATAAGT
15056952 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
15056980 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:15056998 original size:11 final size:11
Alignment explanation
Indices: 15056982--15057011 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
15056972 TCACTTGTTG
15056982 CCATGGTCCAA
1 CCATGGTCCAA
15056993 CCATGGTCCAA
1 CCATGGTCCAA
15057004 CCATGGTC
1 CCATGGTC
15057012 TTTTCCTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (11 bp):
CCATGGTCCAA
Found at i:15068013 original size:3 final size:3
Alignment explanation
Indices: 15068005--15068044 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
15067995 TTTGGTTCTT
15068005 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15068045 AATAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15068503 original size:24 final size:25
Alignment explanation
Indices: 15068476--15068531 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 25
15068466 TACCTTTTCA
15068476 GTTTTATTTATTTG-TTCTTTATTT
1 GTTTTATTTATTTGTTTCTTTATTT
15068500 GTTTTATTTATTTGTTTTTCTTTATTT
1 GTTTTATTTATTTG--TTTCTTTATTT
15068527 GTTTT
1 GTTTT
15068532 TTCTGTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 14 0.48
27 15 0.52
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.77
Consensus pattern (25 bp):
GTTTTATTTATTTGTTTCTTTATTT
Found at i:15068529 original size:38 final size:35
Alignment explanation
Indices: 15068477--15068551 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 35
15068467 ACCTTTTCAG
*
15068477 TTTTATTTATTTGTTCTTTATTTGTTTTATTTATTTGT
1 TTTTATTTATTTGTT-TTT-TCTGTTTT-TTTATTTGT
*
15068515 TTTTCTTTATTTGTTTTTTCTGTTTTTTTATTTGT
1 TTTTATTTATTTGTTTTTTCTGTTTTTTTATTTGT
15068550 TT
1 TT
15068552 AATAATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
35 11 0.31
36 7 0.20
37 3 0.09
38 14 0.40
ACGTcount: A:0.09, C:0.04, G:0.08, T:0.79
Consensus pattern (35 bp):
TTTTATTTATTTGTTTTTTCTGTTTTTTTATTTGT
Found at i:15068534 original size:60 final size:57
Alignment explanation
Indices: 15068419--15068550 Score: 149
Period size: 60 Copynumber: 2.3 Consensus size: 57
15068409 TTTTTTTATT
* *
15068419 TTTTAATTTATTTGTCCTTTTTCGTTTTTTATTTGTTTTTCTATGTTTACCTTTTCAG
1 TTTT-ATTTATTTGTTCTTTTTCGTTTTTTATTTGTTTTTCTATATTTACCTTTTCAG
* * *** *
15068477 TTTTATTTATTTGTTCTTTATTTGTTTTATTTATTTGTTTTTCTTTATTTGTTTTTTCTG
1 TTTTATTTATTTGTTCTTT-TTCG-TTT-TTTATTTGTTTTTCTATATTTACCTTTTCAG
15068537 TTTT-TTTATTTGTT
1 TTTTATTTATTTGTT
15068551 TAATAATATT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
57 14 0.22
58 7 0.11
59 13 0.21
60 29 0.46
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.73
Consensus pattern (57 bp):
TTTTATTTATTTGTTCTTTTTCGTTTTTTATTTGTTTTTCTATATTTACCTTTTCAG
Found at i:15072127 original size:49 final size:50
Alignment explanation
Indices: 15072044--15072289 Score: 257
Period size: 49 Copynumber: 4.9 Consensus size: 50
15072034 ATCTATTGTG
* * * *
15072044 AGGTCACGTGCGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
15072094 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * **
15072144 CGATTACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* ***
15072194 AGGTCACGA-GTGTAGTACTAAGTGCAGGCTACTACGTGTAATGGATAATT
1 AGGTCAC-ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
15072244 -GGT-AGCATGTGTAGTACTAAGTTCAGGCTACTATGCGTACCAGATA
1 AGGTCA-CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
15072290 GCTTTGGCTA
Statistics
Matches: 160, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
48 2 0.01
49 77 0.48
50 43 0.27
51 38 0.24
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:15073769 original size:3 final size:3
Alignment explanation
Indices: 15073761--15073889 Score: 117
Period size: 3 Copynumber: 43.3 Consensus size: 3
15073751 ATAAAAGGAT
*
15073761 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATGA A-A ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* * *
15073806 ATA ATA GTA GTA ATA ATA ATA ATA ATA ATGA AT- ATAA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA AT-A ATA ATA ATA
* *
15073852 A-A AGA A-A ATA ATA ATA A-A ATTA ACTA AT- TTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A-TA A-TA ATA ATA ATA ATA A
15073890 AGTAGCTAAA
Statistics
Matches: 107, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
2 11 0.10
3 84 0.79
4 12 0.11
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:15076874 original size:21 final size:23
Alignment explanation
Indices: 15076841--15076901 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
15076831 AATATCTTTA
*
15076841 AAAATAGTTTAAAAAT-TATATTT
1 AAAATA-TTTAAAAATATACATTT
15076864 AAAAT-TTT-AAAATATACATTT
1 AAAATATTTAAAAATATACATTT
15076885 AAAATATTATAAAAATA
1 AAAATATT-TAAAAATA
15076902 ATAAATTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 5 0.15
21 14 0.42
22 2 0.06
23 6 0.18
24 6 0.18
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATATTTAAAAATATACATTT
Found at i:15076982 original size:22 final size:24
Alignment explanation
Indices: 15076947--15077000 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
15076937 ATTTTAAATG
*
15076947 TTTTATAATATTAAAAAATAAT-A
1 TTTTAAAATATTAAAAAATAATAA
*
15076970 -TTTAAAATTTTAAAAAATAATAA
1 TTTTAAAATATTAAAAAATAATAA
15076993 TTTTAAAA
1 TTTTAAAA
15077001 AATATATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 19 0.70
23 1 0.04
24 7 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTTAAAATATTAAAAAATAATAA
Found at i:15077025 original size:22 final size:23
Alignment explanation
Indices: 15076993--15077044 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
15076983 AAAATAATAA
*
15076993 TTTTAAAAAAT-ATATTTAAAAT
1 TTTTAAAAAATAATATTAAAAAT
*
15077015 TTTTAATAAATAATATTAAAAA-
1 TTTTAAAAAATAATATTAAAAAT
*
15077037 ATTTAAAA
1 TTTTAAAA
15077045 TTTACATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
TTTTAAAAAATAATATTAAAAAT
Found at i:15077048 original size:38 final size:35
Alignment explanation
Indices: 15076951--15077038 Score: 124
Period size: 38 Copynumber: 2.4 Consensus size: 35
15076941 TAAATGTTTT
15076951 ATAATATTAAAAAATAATATTTAAAATTTTAAAAA
1 ATAATATTAAAAAATAATATTTAAAATTTTAAAAA
*
15076986 ATAATAATTTTAAAAAAT-ATATTTAAAATTTTTAATAA
1 ATAAT-A--TTAAAAAATAATATTTAAAA-TTTTAAAAA
15077024 ATAATATTAAAAAAT
1 ATAATATTAAAAAAT
15077039 TTAAAATTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
35 14 0.29
36 1 0.02
37 11 0.23
38 22 0.46
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (35 bp):
ATAATATTAAAAAATAATATTTAAAATTTTAAAAA
Found at i:15077167 original size:25 final size:27
Alignment explanation
Indices: 15077132--15077200 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
15077122 AGTAAATAAA
*
15077132 GAAAAACAAATAAAAAA-C-GAAAAAG
1 GAAAAATAAATAAAAAATCAGAAAAAG
* * *
15077157 GACAAATAAATAAAAAATCATAAAAAT
1 GAAAAATAAATAAAAAATCAGAAAAAG
*
15077184 GAAAAATATATAAAAAA
1 GAAAAATAAATAAAAAA
15077201 AATCAGGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 15 0.42
26 1 0.03
27 20 0.56
ACGTcount: A:0.74, C:0.06, G:0.07, T:0.13
Consensus pattern (27 bp):
GAAAAATAAATAAAAAATCAGAAAAAG
Found at i:15078502 original size:20 final size:20
Alignment explanation
Indices: 15078477--15078536 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
15078467 TTTTAAAATT
15078477 TAAAAATTATTAAAAAATCA
1 TAAAAATTATTAAAAAATCA
* *
15078497 TAAAAATTA-AAAAAAAGTTA
1 TAAAAATTATTAAAAAA-TCA
*
15078517 TAAAATTTTTATTAAAAAAT
1 TAAAA--ATTATTAAAAAAT
15078537 TAACAAGACC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.19
20 16 0.50
22 4 0.12
23 6 0.19
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAAATTATTAAAAAATCA
Found at i:15079932 original size:23 final size:22
Alignment explanation
Indices: 15079906--15079972 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
15079896 GAAAAAGACA
15079906 GATGAACAATGAAGATTCTCTG
1 GATGAACAATGAAGATTCTCTG
*
15079928 CGATGAACAAT-AAAATTCTCTG
1 -GATGAACAATGAAGATTCTCTG
* *
15079950 GCATGAAAAATGAAGATTTTCTG
1 G-ATGAACAATGAAGATTCTCTG
15079973 TTGAAAGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 18 0.47
23 19 0.50
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.28
Consensus pattern (22 bp):
GATGAACAATGAAGATTCTCTG
Found at i:15080085 original size:9 final size:9
Alignment explanation
Indices: 15080048--15080086 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
15080038 TATTTTATAA
15080048 TTTAAAATT
1 TTTAAAATT
*
15080057 TTTATAATCT
1 TTTAAAAT-T
15080067 TTTAATAATT
1 TTTAA-AATT
15080077 TTTAAAATT
1 TTTAAAATT
15080086 T
1 T
15080087 AAAAGGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 12 0.46
10 11 0.42
11 3 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTAAAATT
Found at i:15080816 original size:22 final size:22
Alignment explanation
Indices: 15080791--15080833 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15080781 CAATTATGTG
* *
15080791 ATTTATATTTATAAAAATATAT
1 ATTTAAATTAATAAAAATATAT
*
15080813 ATTTAAATTAATGAAAATATA
1 ATTTAAATTAATAAAAATATA
15080834 AATATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTTAAATTAATAAAAATATAT
Found at i:15084867 original size:20 final size:17
Alignment explanation
Indices: 15084829--15084872 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 17
15084819 AAACCCTAAT
15084829 TTTCCCTTTTCTTTTTC
1 TTTCCCTTTTCTTTTTC
15084846 TTTCCCTTCTTCCTTCTTTC
1 TTTCCCTT-TT-CTT-TTTC
15084866 TTTCCCT
1 TTTCCCT
15084873 GCTCATTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.33
18 2 0.08
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTCCCTTTTCTTTTTC
Found at i:15084999 original size:16 final size:17
Alignment explanation
Indices: 15084946--15084999 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
15084936 ATTAATATAT
* *
15084946 TATAATTATATAATTTA
1 TATAATTATTTACTTTA
* *
15084963 -AT-ATAATTTACTTTT
1 TATAATTATTTACTTTA
15084978 TATAATTATTTAC-TTA
1 TATAATTATTTACTTTA
15084994 TATAAT
1 TATAAT
15085000 AAGTAAATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 9 0.31
16 12 0.41
17 8 0.28
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (17 bp):
TATAATTATTTACTTTA
Found at i:15087965 original size:15 final size:15
Alignment explanation
Indices: 15087945--15087976 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15087935 CATTTCACTA
*
15087945 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
15087960 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
15087975 TT
1 TT
15087977 TTCATGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:15099919 original size:16 final size:16
Alignment explanation
Indices: 15099898--15099942 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
15099888 ATATATTATA
15099898 TATTTTTTATTTGTTT
1 TATTTTTTATTTGTTT
*
15099914 TATTTTTTAGATTGTTT
1 TATTTTTTA-TTTGTTT
*
15099931 AATTTTTGTATT
1 TATTTTT-TATT
15099943 ATGACCAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 9 0.38
17 13 0.54
18 2 0.08
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.73
Consensus pattern (16 bp):
TATTTTTTATTTGTTT
Found at i:15100238 original size:22 final size:22
Alignment explanation
Indices: 15100208--15100249 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15100198 AACTCTGAAA
* *
15100208 TTTAAGATTTTGAGTTTAAGGG
1 TTTAAGATTTTAAATTTAAGGG
*
15100230 TTTAGGATTTTAAATTTAAG
1 TTTAAGATTTTAAATTTAAG
15100250 ATTAGGATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (22 bp):
TTTAAGATTTTAAATTTAAGGG
Found at i:15102654 original size:12 final size:12
Alignment explanation
Indices: 15102637--15102684 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
15102627 TATTCATGAG
15102637 AAATTATTTAAT
1 AAATTATTTAAT
***
15102649 AAATTAAAAAAT
1 AAATTATTTAAT
*
15102661 AAATTATTTAAC
1 AAATTATTTAAT
15102673 AAATATATTTAA
1 AAAT-TATTTAA
15102685 ATATTGACGA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATTATTTAAT
Found at i:15107872 original size:20 final size:20
Alignment explanation
Indices: 15107831--15107872 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
15107821 ATGATATAAC
* *
15107831 ATGTGTAATAGTTGGTATAT
1 ATGTGTAATAGTTGATAGAT
15107851 ATGTGTAATAGTT-ATAAGAT
1 ATGTGTAATAGTTGAT-AGAT
15107871 AT
1 AT
15107873 TTTATGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (20 bp):
ATGTGTAATAGTTGATAGAT
Found at i:15107957 original size:14 final size:14
Alignment explanation
Indices: 15107940--15107970 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15107930 ATAATATAGT
15107940 ATAATGAATAAAGA
1 ATAATGAATAAAGA
*
15107954 ATAATGAGTAAAGA
1 ATAATGAATAAAGA
15107968 ATA
1 ATA
15107971 GAAAAGTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (14 bp):
ATAATGAATAAAGA
Found at i:15108004 original size:4 final size:4
Alignment explanation
Indices: 15107995--15108073 Score: 61
Period size: 4 Copynumber: 19.2 Consensus size: 4
15107985 AGCAAACGTG
* * * * **
15107995 AGAA AGAA AGAA AGAA AGAA AGAT AGAA AGACT A-AC AGAG AGCAA ACGTG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA-A AGAA AGAA AG-AA A-GAA
*
15108045 AGAA AGAA AGAA GGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
15108074 TAAAAAAGGG
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
3 1 0.02
4 53 0.90
5 4 0.07
6 1 0.02
ACGTcount: A:0.65, C:0.05, G:0.27, T:0.04
Consensus pattern (4 bp):
AGAA
Found at i:15108033 original size:50 final size:50
Alignment explanation
Indices: 15107979--15108073 Score: 172
Period size: 50 Copynumber: 1.9 Consensus size: 50
15107969 TAGAAAAGTT
*
15107979 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGATAGAAAGACTA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
*
15108029 ACAGAGAGCAAACGTGAGAAAGAAAGAAGGAAAGAAAGAAAGAAA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
15108074 TAAAAAAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.61, C:0.07, G:0.27, T:0.04
Consensus pattern (50 bp):
ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
Found at i:15112039 original size:35 final size:35
Alignment explanation
Indices: 15111971--15112041 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
15111961 CATCTCCGGA
* * * * *
15111971 GCTTGGTAAATATGGAAAGTGTTCTTCACAGATAT
1 GCTTGGCAAATATGGAAAGGGATCCTCAAAGATAT
*
15112006 GCTTGGCAAATATGGAAGGGGATCCTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGGATCCTCAAAGATAT
15112041 G
1 G
15112042 TGATCTTAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGGATCCTCAAAGATAT
Found at i:15124621 original size:18 final size:18
Alignment explanation
Indices: 15124577--15124628 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
15124567 ACATCAGCAT
* *
15124577 TTAATTAATTTTTTAAATA
1 TTAATTAA-ATTTTAAAAA
**
15124596 TTTTTTAAATTTTAAAAA
1 TTAATTAAATTTTAAAAA
*
15124614 TTAATTAAATGTTAA
1 TTAATTAAATTTTAA
15124629 CAAGTCATCC
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTAATTAAATTTTAAAAA
Found at i:15124830 original size:16 final size:16
Alignment explanation
Indices: 15124809--15124841 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15124799 TTGGTTCTCA
15124809 ACTAATTATATATTAC
1 ACTAATTATATATTAC
15124825 ACTAATTATATATTAC
1 ACTAATTATATATTAC
15124841 A
1 A
15124842 TTTAGATCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
ACTAATTATATATTAC
Found at i:15125263 original size:27 final size:28
Alignment explanation
Indices: 15125222--15125275 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
15125212 GGAACGACTC
* *
15125222 TTTTTTTATATTAAAATATTTTTTTTTG
1 TTTTTTTATAATAAAATATTATTTTTTG
15125250 TTTTTTTA-AATAAAATATTATTTTTT
1 TTTTTTTATAATAAAATATTATTTTTT
15125276 ATTGTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTTTTTTATAATAAAATATTATTTTTTG
Found at i:15125272 original size:30 final size:28
Alignment explanation
Indices: 15125222--15125280 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
15125212 GGAACGACTC
* * *
15125222 TTTTTTTATATTAAAATATTTTTTTTTG
1 TTTTTTTAAATAAAAATATTTTTTATTG
15125250 TTTTTTTAAATAAAATATTATTTTTTATTG
1 TTTTTTTAAATAAAA-A-TATTTTTTATTG
15125280 T
1 T
15125281 CGGATCAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 13 0.50
29 1 0.04
30 12 0.46
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (28 bp):
TTTTTTTAAATAAAAATATTTTTTATTG
Found at i:15126225 original size:18 final size:19
Alignment explanation
Indices: 15126202--15126240 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15126192 AATAAAAATA
15126202 AAAAATA-ATAT-TTTATTT
1 AAAAATATATATATTT-TTT
15126220 AAAAATATATATATTTTTT
1 AAAAATATATATATTTTTT
15126239 AA
1 AA
15126241 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 9 0.47
20 3 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AAAAATATATATATTTTTT
Found at i:15130104 original size:34 final size:34
Alignment explanation
Indices: 15130061--15130131 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
15130051 CTAAGCTTAG
15130061 TAAGCCCATATAACTCAAAATTAAACTTACCATT
1 TAAGCCCATATAACTCAAAATTAAACTTACCATT
*
15130095 TAAGCCCATATAATTCAAAATTAAACTTACCATT
1 TAAGCCCATATAACTCAAAATTAAACTTACCATT
15130129 TAA
1 TAA
15130132 AGTAATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (34 bp):
TAAGCCCATATAACTCAAAATTAAACTTACCATT
Found at i:15130403 original size:24 final size:24
Alignment explanation
Indices: 15130349--15130439 Score: 114
Period size: 24 Copynumber: 3.8 Consensus size: 24
15130339 GAGACATGGC
*
15130349 CAGTAAGCTCTTCATGAGCTGATAA
1 CAGTAAGCTCTT-ATGAGCTGAAAA
15130374 CAGTAAGCT-TTATTGAGCTGAAAA
1 CAGTAAGCTCTTA-TGAGCTGAAAA
*
15130398 CGGTAAGCTCTTATGAGCTG-AAA
1 CAGTAAGCTCTTATGAGCTGAAAA
* *
15130421 CAGTAAGCTCATAAGAGCT
1 CAGTAAGCTCTTATGAGCT
15130440 ATGGTGAGTC
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
23 20 0.34
24 27 0.46
25 12 0.20
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (24 bp):
CAGTAAGCTCTTATGAGCTGAAAA
Found at i:15134716 original size:12 final size:12
Alignment explanation
Indices: 15134699--15134723 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15134689 AACGAAAGCT
15134699 TCAAGGCATGTA
1 TCAAGGCATGTA
15134711 TCAAGGCATGTA
1 TCAAGGCATGTA
15134723 T
1 T
15134724 TTCACCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TCAAGGCATGTA
Found at i:15135400 original size:2 final size:2
Alignment explanation
Indices: 15135393--15135418 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15135383 AAATATTGCT
15135393 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
15135419 AACATGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15136239 original size:21 final size:21
Alignment explanation
Indices: 15136198--15136239 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
15136188 GAATATTTTA
* *
15136198 AAATAAATTTAATTATTAAAT
1 AAATAAATTTAAGTATGAAAT
15136219 AAATAAATTTAGAGT-TGAAAT
1 AAATAAATTTA-AGTATGAAAT
15136240 TGAATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
AAATAAATTTAAGTATGAAAT
Found at i:15139387 original size:29 final size:29
Alignment explanation
Indices: 15139355--15139412 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
15139345 ACATATCAAA
*
15139355 ACAATCAACTTAGATGCCTATCTAATGTT
1 ACAATCAACTTAGATGCCTATATAATGTT
15139384 ACAATCAACTTAGATGCCTATATAATGTT
1 ACAATCAACTTAGATGCCTATATAATGTT
15139413 CCCTCATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (29 bp):
ACAATCAACTTAGATGCCTATATAATGTT
Found at i:15141055 original size:18 final size:18
Alignment explanation
Indices: 15141009--15141056 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
15140999 TCTCTTTTTC
* *
15141009 TTTCTTTT-TTTTTTTTG
1 TTTCTTTTCTATTGTTTG
* *
15141026 TTTCGTTCCTATTGTTTG
1 TTTCTTTTCTATTGTTTG
15141044 TTTCTTTTCTATT
1 TTTCTTTTCTATT
15141057 TCATTTCTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.04, C:0.12, G:0.08, T:0.75
Consensus pattern (18 bp):
TTTCTTTTCTATTGTTTG
Found at i:15141092 original size:5 final size:5
Alignment explanation
Indices: 15141082--15141110 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15141072 ATTTAGTTAT
15141082 TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
15141111 TACTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:15148266 original size:37 final size:37
Alignment explanation
Indices: 15148187--15148269 Score: 123
Period size: 37 Copynumber: 2.2 Consensus size: 37
15148177 AACCTTTAGT
* *
15148187 TCGGGGCTTACCCGGACAAAATCTCCACCAGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACCAGTAGTCA
*
15148224 TCGGGTCTTACCCGGACATAATCTCCA-CACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACCA-GTAGTCA
15148261 TCGGGTCTT
1 TCGGGTCTT
15148270 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
36 2 0.05
37 40 0.95
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACCAGTAGTCA
Found at i:15148456 original size:47 final size:47
Alignment explanation
Indices: 15148387--15148765 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
15148377 CCCTTCGGGA
* * * * *
15148387 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15148434 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* *
15148481 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15148528 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15148575 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15148622 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15148669 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15148716 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15148763 CTT
1 CTT
15148766 GTCATCACAT
Statistics
Matches: 312, Mismatches: 18, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 311 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15148465 original size:25 final size:25
Alignment explanation
Indices: 15148437--15148515 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
15148427 ACTCGGCCTT
*
15148437 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * *
15148462 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATGCACTTTCA-CATTC
15148484 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
15148509 ATCACAT
1 ATCACAT
15148516 GGGCCATTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 6 0.14
25 19 0.45
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:15148645 original size:141 final size:141
Alignment explanation
Indices: 15148391--15148896 Score: 661
Period size: 141 Copynumber: 3.4 Consensus size: 141
15148381 TCGGGACTTA
* * * * *
15148391 TCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* * * *
15148456 ACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCACTTTCACATTCATCACATGGGCC
66 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
15148521 ATTAGGCCTTG
131 ATTAGGCCTTG
* *
15148532 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
15148597 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
15148662 ATTAGGCCTTG
131 ATTAGGCCTTG
15148673 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* *
15148738 ACATTCATCACATCGGCCATTAGGCCTTGTCATCACATCGGCCATTAGGCCTTGTCACATATATA
66 ACATTCATCACATCGGCCATTCGGCC-T-T-ATCACAT-----A-TA-----T-ACA--------
15148803 CACTTTCACATTCATCACATCGGCCATTAGGCCTTG
108 --CTTTCACATTCATCACATCGGCCATTAGGCCTTG
*
15148839 TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
15148897 TATCTCATAC
Statistics
Matches: 324, Mismatches: 16, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
141 218 0.67
142 1 0.00
143 1 0.00
144 7 0.02
149 1 0.00
150 2 0.01
155 1 0.00
156 2 0.01
166 91 0.28
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (141 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTG
Found at i:15148770 original size:25 final size:25
Alignment explanation
Indices: 15148742--15148794 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
15148732 ACTTTCACAT
15148742 TCATCACATCGGCCATTAGGCCTTG
1 TCATCACATCGGCCATTAGGCCTTG
15148767 TCATCACATCGGCCATTAGGCCTTG
1 TCATCACATCGGCCATTAGGCCTTG
15148792 TCA
1 TCA
15148795 CATATATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (25 bp):
TCATCACATCGGCCATTAGGCCTTG
Found at i:15148771 original size:72 final size:72
Alignment explanation
Indices: 15148695--15148841 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
15148685 ACTTTCACAT
15148695 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
15148760 GGCCTTG
66 GGCCTTG
*
15148767 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
15148832 GGCCTTG
66 GGCCTTG
15148839 TCA
1 TCA
15148842 CATATATACA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (72 bp):
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTG
Found at i:15148790 original size:119 final size:119
Alignment explanation
Indices: 15148648--15148884 Score: 456
Period size: 119 Copynumber: 2.0 Consensus size: 119
15148638 ACTTTCACAT
15148648 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
15148713 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
66 GGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTG
15148767 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
15148832 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTT
66 GGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTT
15148885 ATCACATATA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 116 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (119 bp):
TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTG
Found at i:15148818 original size:47 final size:47
Alignment explanation
Indices: 15148767--15148896 Score: 242
Period size: 47 Copynumber: 2.8 Consensus size: 47
15148757 TTAGGCCTTG
15148767 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACAT
15148814 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACAT
* *
15148861 TCATCACATCGACCATTAGGCCTTATCACATATATA
1 TCATCACATCGGCCATTAGGCCTTGTCACATATATA
15148897 TATCTCATAC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (47 bp):
TCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACAT
Found at i:15151530 original size:27 final size:27
Alignment explanation
Indices: 15151500--15151645 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
15151490 TACTGAAATG
* * *
15151500 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
15151527 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
15151554 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
15151581 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
15151608 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
15151635 CCCTCAATTTA
1 CCCTCGATTTA
15151646 AAAAATTGTC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:15151650 original size:27 final size:27
Alignment explanation
Indices: 15151500--15151670 Score: 207
Period size: 27 Copynumber: 6.3 Consensus size: 27
15151490 TACTGAAATG
* * * *
15151500 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
15151527 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
15151554 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
15151581 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
15151608 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * ** * *
15151635 CCCTCAATTTAAAAAATTGTCGTTTTG
1 CCCTCGATTTACAAAATTACCATTTTA
15151662 CCCTCGATT
1 CCCTCGATT
15151671 GTGAAATTAT
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:15151666 original size:81 final size:81
Alignment explanation
Indices: 15151498--15151670 Score: 256
Period size: 81 Copynumber: 2.1 Consensus size: 81
15151488 ATTACTGAAA
* * *
15151498 TGCCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TGCCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
* *
15151563 TATAGAATTACCATTT
66 TAAAAAATTACCATTT
* *
15151579 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
1 TGCCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
** *
15151644 TAAAAAATTGTCGTTT
66 TAAAAAATTACCATTT
15151660 TGCCCTCGATT
1 TGCCCTCGATT
15151671 GTGAAATTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
TGCCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAATT
TAAAAAATTACCATTT
Found at i:15151732 original size:27 final size:27
Alignment explanation
Indices: 15151702--15151852 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
15151692 TGTAGGATAG
15151702 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
15151729 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
15151756 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
15151783 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
15151810 AATTACTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
15151837 AATTACCAAAATACCC
1 AATTACCAAAATACCC
15151853 TTGATTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 3 0.03
27 104 0.95
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:15151859 original size:27 final size:27
Alignment explanation
Indices: 15151702--15151965 Score: 189
Period size: 27 Copynumber: 9.7 Consensus size: 27
15151692 TGTAGGATAG
*
15151702 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
15151729 AATTATCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
15151756 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * *
15151783 AATTACCGAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
** **
15151810 AATTACTGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
15151837 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
15151864 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * **
15151893 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
15151920 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
15151947 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
15151966 TAGGATGAAA
Statistics
Matches: 198, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.02
27 168 0.85
28 8 0.04
29 19 0.10
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:15151866 original size:81 final size:81
Alignment explanation
Indices: 15151702--15151878 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
15151692 TGTAGGATAG
* * *
15151702 AATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AATTACCGAAATACCACTAGTTTGTAAAATTATCAAAATACCCCTAATTTGTAAAATTACCAAAA
**
15151767 TACCCCTAGTTTGTAA
66 TACCCCTAGTTTACAA
* * *
15151783 AATTACCGAAATACCACTGGTTTGTGAAATTA-CTGAAATA-CCCTCAATTTGTAAAATTACCAA
1 AATTACCGAAATACCACTAGTTTGTAAAATTATC-AAAATACCCCT-AATTTGTAAAATTACCAA
*
15151846 AATA-CCCTTGATTTACAA
64 AATACCCCTAG-TTTACAA
*
15151864 AATTACAGAAATACC
1 AATTACCGAAATACC
15151879 CTTGACTTTC
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 10 0.12
81 73 0.88
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCGAAATACCACTAGTTTGTAAAATTATCAAAATACCCCTAATTTGTAAAATTACCAAAA
TACCCCTAGTTTACAA
Found at i:15151934 original size:110 final size:109
Alignment explanation
Indices: 15151722--15151965 Score: 269
Period size: 110 Copynumber: 2.2 Consensus size: 109
15151712 ATACCCCTAG
* * ** * *
15151722 TTTGTAAAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAAT
1 TTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAAT
* ***
15151786 TACCGAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAA
66 TACAGAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
*
15151830 TTTGTAAAATTACCAAAATACCCTTGA-TTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAA
1 TTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCA-AAATACCCCT-ACTTTCT-AA
* * ***
15151893 AATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGG
63 AATTACAGAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
* * *
15151940 TTTGTAGATTTACCAAAACACCCTTG
1 TTTGTAAAATTACCAAAATACCCTTG
15151966 TAGGATGAAA
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
107 2 0.02
108 42 0.37
109 6 0.05
110 63 0.56
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (109 bp):
TTTGTAAAATTACCAAAATACCCTTGAGTTTACAAAATTACCAAAATACCCCTACTTTCTAAAAT
TACAGAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
Found at i:15152071 original size:27 final size:28
Alignment explanation
Indices: 15151996--15152072 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
15151986 ACCCCTAATA
*
15151996 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
15152023 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
15152050 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
15152073 ATGTTCCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:15152907 original size:25 final size:24
Alignment explanation
Indices: 15152869--15152938 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
15152859 AGGAAGTGCT
*
15152869 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
15152893 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
15152918 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
15152939 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:15152951 original size:24 final size:24
Alignment explanation
Indices: 15152868--15152951 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
15152858 GAGGAAGTGC
* *
15152868 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
15152893 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
15152917 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
15152941 TAAAAGAGGCT
1 TAAAAG-GGCT
15152952 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:15153145 original size:42 final size:42
Alignment explanation
Indices: 15153086--15153177 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
15153076 TAGTCTCCCC
*
15153086 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
15153128 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
15153170 AAATGGGC
1 AAATGGGC
15153178 CTAAAGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:15153248 original size:31 final size:31
Alignment explanation
Indices: 15153201--15153284 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
15153191 CGTTTACAGT
* *
15153201 AAAGGCTTCGGCCCAGTGGTATGATTTATGA
1 AAAGACTTCGGCCCAGTGATATGATTTATGA
* *
15153232 AAAGACTTTGGCCCAGTGATATGATTTATGG
1 AAAGACTTCGGCCCAGTGATATGATTTATGA
* *
15153263 AAAGGCTTCGACCCAGT-ATATG
1 AAAGACTTCGGCCCAGTGATATG
15153285 TCAAGACTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGACTTCGGCCCAGTGATATGATTTATGA
Found at i:15156133 original size:49 final size:50
Alignment explanation
Indices: 15156028--15156137 Score: 134
Period size: 51 Copynumber: 2.2 Consensus size: 50
15156018 TTAAGGGCGG
* * * *
15156028 GGAGAGATGGGTGGCACTAGTATTAAAAAATAAATTTTTTTGGGTGGAAGA
1 GGAGAGATGAGCGGCACTAATATTAAAAAAT-AATTTTTTTGGGTAGAAGA
15156079 GGAGAGATGAGCGGCACTAATA-TAAAAAAT-ATTATTTTTGGGTAGAGAGA
1 GGAGAGATGAGCGGCACTAATATTAAAAAATAATT-TTTTTGGGTAGA-AGA
15156129 GAGAGAGAT
1 G-GAGAGAT
15156138 AGTCTAGTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
48 3 0.06
49 11 0.21
50 12 0.23
51 26 0.50
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (50 bp):
GGAGAGATGAGCGGCACTAATATTAAAAAATAATTTTTTTGGGTAGAAGA
Found at i:15158916 original size:29 final size:32
Alignment explanation
Indices: 15158863--15158926 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 32
15158853 ATAATCTATA
*
15158863 TTTTTATAATTTTTAAAAGATTAAA-T-TAAT
1 TTTTTATAATTTTTAAAAGACTAAAGTGTAAT
**
15158893 TTTTTAT-ATTTTTAGGAGACTAAAGTGTAAT
1 TTTTTATAATTTTTAAAAGACTAAAGTGTAAT
15158924 TTT
1 TTT
15158927 ACATTTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 14 0.48
30 8 0.28
31 7 0.24
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (32 bp):
TTTTTATAATTTTTAAAAGACTAAAGTGTAAT
Found at i:15162462 original size:27 final size:25
Alignment explanation
Indices: 15162442--15162499 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
15162432 TAAAACTTAC
15162442 TTTAAATTAGTAAATAATAAAATTATA
1 TTTAAATTA--AAATAATAAAATTATA
* *
15162469 TTTAACTTAAAATAATAAAATTTTAA
1 TTTAAATTAAAATAATAAAATTAT-A
15162495 TTTAA
1 TTTAA
15162500 TCTTTTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.50
26 6 0.21
27 8 0.29
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
TTTAAATTAAAATAATAAAATTATA
Found at i:15163563 original size:6 final size:6
Alignment explanation
Indices: 15163552--15163576 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15163542 TGCTGAGAGG
15163552 TTGAGA TTGAGA TTGAGA TTGAGA T
1 TTGAGA TTGAGA TTGAGA TTGAGA T
15163577 AGTTATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (6 bp):
TTGAGA
Found at i:15163815 original size:31 final size:30
Alignment explanation
Indices: 15163774--15163833 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
15163764 CTTCAATTTG
15163774 ATCAAATTTAA-TCTCTATACTCTTTGAATTA
1 ATCAAATTTAATTC-CTATACT-TTTGAATTA
* *
15163805 ATCAAGTTTAATTCCTATACTTTTTAATT
1 ATCAAATTTAATTCCTATACTTTTGAATT
15163834 TTTAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 7 0.27
31 17 0.65
32 2 0.08
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (30 bp):
ATCAAATTTAATTCCTATACTTTTGAATTA
Found at i:15165150 original size:28 final size:30
Alignment explanation
Indices: 15165100--15165159 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 30
15165090 ACTTATTTTC
15165100 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
15165130 TTGTTAA-TTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
15165158 TT
1 TT
15165160 ACTTGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 18 0.64
29 3 0.11
30 7 0.25
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:15177764 original size:16 final size:16
Alignment explanation
Indices: 15177739--15177772 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15177729 TTCACAGAAC
15177739 AAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAAG
* *
15177755 AAAAAGAAAAAAGAAG
1 AAAAAAAAAAAAAAAG
15177771 AA
1 AA
15177773 GACTATAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:15177774 original size:13 final size:13
Alignment explanation
Indices: 15177734--15177774 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15177724 ACAACTTCAC
15177734 AGAACAAAA-AAAA
1 AGAA-AAAAGAAAA
15177747 A-AAAAAAGAAAA
1 AGAAAAAAGAAAA
*
15177759 AGAAAAAAGAAGA
1 AGAAAAAAGAAAA
15177772 AGA
1 AGA
15177775 CTATAATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 14 0.56
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (13 bp):
AGAAAAAAGAAAA
Found at i:15182614 original size:16 final size:16
Alignment explanation
Indices: 15182593--15182624 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15182583 GTAAGATTAA
15182593 ATGAATGAGTAAGGAG
1 ATGAATGAGTAAGGAG
15182609 ATGAATGAGTAAGGAG
1 ATGAATGAGTAAGGAG
15182625 GTGTTGGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.19
Consensus pattern (16 bp):
ATGAATGAGTAAGGAG
Found at i:15182776 original size:28 final size:28
Alignment explanation
Indices: 15182744--15182802 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
15182734 TAGCTTAAAG
15182744 TGGAAGACAAATTTCTTATACCTATGGT
1 TGGAAGACAAATTTCTTATACCTATGGT
15182772 TGGAAGACAAATTTCTTATACCTATGGT
1 TGGAAGACAAATTTCTTATACCTATGGT
15182800 TGG
1 TGG
15182803 TAGGAACTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.36
Consensus pattern (28 bp):
TGGAAGACAAATTTCTTATACCTATGGT
Found at i:15193983 original size:16 final size:17
Alignment explanation
Indices: 15193962--15193999 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15193952 AATAAAAGAC
15193962 AGAGAAT-AAAGAACAA
1 AGAGAATGAAAGAACAA
* *
15193978 AGAGAATGAAATAGCAA
1 AGAGAATGAAAGAACAA
15193995 AGAGA
1 AGAGA
15194000 GAGTGTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.63, C:0.05, G:0.24, T:0.08
Consensus pattern (17 bp):
AGAGAATGAAAGAACAA
Found at i:15206862 original size:13 final size:13
Alignment explanation
Indices: 15206844--15206869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15206834 TTGGATATTA
15206844 TTATTATTATTTT
1 TTATTATTATTTT
15206857 TTATTATTATTTT
1 TTATTATTATTTT
15206870 GTATGTCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:15208108 original size:8 final size:8
Alignment explanation
Indices: 15208095--15208126 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
15208085 CTAGATCGGC
15208095 AAAAGCCG
1 AAAAGCCG
15208103 AAAAGCCG
1 AAAAGCCG
*
15208111 AAAAGCTG
1 AAAAGCCG
15208119 AAAAGCCG
1 AAAAGCCG
15208127 GCATTTGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.22, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:15208736 original size:19 final size:20
Alignment explanation
Indices: 15208712--15208755 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15208702 CTATTTTGTT
15208712 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
15208731 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
15208751 ATGGG
1 ATGGG
15208756 TAAGGCCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:15208825 original size:60 final size:59
Alignment explanation
Indices: 15208759--15208877 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 59
15208749 ATATGGGTAA
*
15208759 GGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTAATACTGATATGGGCTG
1 GGCCCAATATACTC-CGA-TATGTAA-AGGGCTACGGCCCAGATTAATAATGATATGGGCTG
* *
15208819 GGCCCAATATACTCCGATACTGTAAGGGGCTATGGCCCAGATTAATAATGATATGGGCT
1 GGCCCAATATACTCCGATA-TGTAAAGGGCTACGGCCCAGATTAATAATGATATGGGCT
15208878 AAAGCCCAGT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
59 1 0.02
60 45 0.85
61 7 0.13
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (59 bp):
GGCCCAATATACTCCGATATGTAAAGGGCTACGGCCCAGATTAATAATGATATGGGCTG
Found at i:15211294 original size:23 final size:23
Alignment explanation
Indices: 15211262--15211308 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
15211252 AATGTATGAT
15211262 TACCTATGGATTATTTTGAGATA
1 TACCTATGGATTATTTTGAGATA
*
15211285 TACCTGTGGATTATTTTGAGATA
1 TACCTATGGATTATTTTGAGATA
15211308 T
1 T
15211309 TATCGATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.45
Consensus pattern (23 bp):
TACCTATGGATTATTTTGAGATA
Found at i:15218709 original size:21 final size:21
Alignment explanation
Indices: 15218660--15218715 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
15218650 CACGTTAGCG
**
15218660 AATAAATATGGATATAAATAA
1 AATAAATATTTATATAAATAA
15218681 AA-AAATATTTATATAAATAA
1 AATAAATATTTATATAAATAA
15218701 AATAAATATTTATAT
1 AATAAATATTTATAT
15218716 TTAAAATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AATAAATATTTATATAAATAA
Found at i:15219305 original size:2 final size:2
Alignment explanation
Indices: 15219298--15219342 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
15219288 GTGGGTTCTC
15219298 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15219340 AT A
1 AT A
15219343 CACATCTCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15219876 original size:38 final size:38
Alignment explanation
Indices: 15219827--15219905 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
15219817 GATATTGTCT
15219827 ATAAATAGAAGTACATCTTGTTAACTAACATCTCGAAA
1 ATAAATAGAAGTACATCTTGTTAACTAACATCTCGAAA
15219865 ATAAATAGAAGTACATCTTGTTAACTAACATCTCGAAA
1 ATAAATAGAAGTACATCTTGTTAACTAACATCTCGAAA
15219903 ATA
1 ATA
15219906 TTGCGCCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (38 bp):
ATAAATAGAAGTACATCTTGTTAACTAACATCTCGAAA
Found at i:15221251 original size:24 final size:24
Alignment explanation
Indices: 15221193--15221254 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
15221183 ACTAACATAC
15221193 ATAAA-TTAATTTTTAATAATAAA
1 ATAAATTTAATTTTTAATAATAAA
**
15221216 ATAAATGAAATTTTTAATAA-AAA
1 ATAAATTTAATTTTTAATAATAAA
15221239 GACT-AATTTAATTTTT
1 -A-TAAATTTAATTTTT
15221255 GATCTAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
23 8 0.25
24 23 0.72
25 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (24 bp):
ATAAATTTAATTTTTAATAATAAA
Found at i:15221316 original size:22 final size:22
Alignment explanation
Indices: 15221274--15221316 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15221264 TACATTTTAA
* *
15221274 TACAAAAAATTTTATATTTTTT
1 TACAAAAAACTTTATACTTTTT
15221296 TACAAAACAACTTT-TACTTTT
1 TACAAAA-AACTTTATACTTTT
15221317 GGTTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (22 bp):
TACAAAAAACTTTATACTTTTT
Found at i:15224280 original size:20 final size:19
Alignment explanation
Indices: 15224255--15224298 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
15224245 TTATATTTTT
* *
15224255 AAAATTCATTATTTACTATA
1 AAAATTCATTA-GTACGATA
*
15224275 AAAATTTATTAGTACGATA
1 AAAATTCATTAGTACGATA
15224294 AAAAT
1 AAAAT
15224299 AATTTCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAATTCATTAGTACGATA
Found at i:15226148 original size:40 final size:37
Alignment explanation
Indices: 15226062--15226193 Score: 157
Period size: 35 Copynumber: 3.6 Consensus size: 37
15226052 TTTTCCTCAT
15226062 TGAAATACCATACCTACATTT-TACAACTCGGTATGG-
1 TGAAATACCATACCTACATTTCT-CAACTCGGTATGGA
* * *
15226098 -GAAATGCCATACCTACATTTCTTAACTCAGTATGGA
1 TGAAATACCATACCTACATTTCTCAACTCGGTATGGA
*
15226134 TTTGATAATACCATACCTACATTTCACAACTCGGTATGGA
1 --TGA-AATACCATACCTACATTTCTCAACTCGGTATGGA
15226174 TG--ATACCATACCTACATTTC
1 TGAAATACCATACCTACATTTC
15226194 ACACTTTGTC
Statistics
Matches: 83, Mismatches: 7, Indels: 13
0.81 0.07 0.13
Matches are distributed among these distances:
35 48 0.58
36 1 0.01
38 2 0.02
39 2 0.02
40 30 0.36
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (37 bp):
TGAAATACCATACCTACATTTCTCAACTCGGTATGGA
Found at i:15233285 original size:2 final size:2
Alignment explanation
Indices: 15233280--15233312 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15233270 ATGATTATTG
15233280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15233313 ATTACTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15235459 original size:42 final size:42
Alignment explanation
Indices: 15235409--15235492 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
15235399 GGCATTTAAC
*
15235409 GAGTTTGTTTTTAAGCCGTTTTAGGTTATTTTATTAAATTTT
1 GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
*
15235451 GAGTTTGTTTCTAAGCCGTTTTAGTTTATTTTATTAAATTTT
1 GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
15235493 CTGTTTCAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.57
Consensus pattern (42 bp):
GAGTTTGTTTCTAAGCCGTTTTAGGTTATTTTATTAAATTTT
Found at i:15237857 original size:2 final size:2
Alignment explanation
Indices: 15237842--15237875 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
15237832 TGTTAAGTAA
15237842 AT AT AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15237876 TTTAACTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15241049 original size:40 final size:40
Alignment explanation
Indices: 15241004--15241081 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
15240994 ACATACCATG
**
15241004 TGGGGATAAAATTGACCCA-CTCAACCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCATC-CAACCCTACACACCAAGTA
*
15241044 TGGGGATATAATCAACCCATCCAACCCTACACACCAAG
1 TGGGGATAAAATCAACCCATCCAACCCTACACACCAAG
15241082 AGGTACCGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.37, C:0.32, G:0.14, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:15247138 original size:21 final size:21
Alignment explanation
Indices: 15247108--15247147 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15247098 TTTGCCAAAG
* *
15247108 ATATGTATTGGATTGAATTGA
1 ATATGAATTGGATTAAATTGA
*
15247129 ATATGAATTGTATTAAATT
1 ATATGAATTGGATTAAATT
15247148 AAGCTAGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (21 bp):
ATATGAATTGGATTAAATTGA
Found at i:15247498 original size:25 final size:25
Alignment explanation
Indices: 15247464--15247675 Score: 170
Period size: 25 Copynumber: 8.6 Consensus size: 25
15247454 ACACACCAAA
* *
15247464 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
15247489 GCTCTCATGAGTTTCCCGTTATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
* ** *
15247514 GCTATCCGGAGCTTCCCGATAATTG
1 GCTCTCATGAGCTTCCCGATATTTG
* *
15247539 GCTCTTATGAGCTTCCCGAT-TAAT-
1 GCTCTCATGAGCTTCCCGATAT-TTG
*
15247563 GCTCTCCA-GAGCTTTCCGATA-TTG
1 GCTCT-CATGAGCTTCCCGATATTTG
* *
15247587 GCTCGCATGAGCTTCTCGA-ATTTG
1 GCTCTCATGAGCTTCCCGATATTTG
*
15247611 GCTCTCTTGAGCTTCCCG-T-TTATG
1 GCTCTCATGAGCTTCCCGATATT-TG
* *
15247635 GCTCGT-ATGAGATTCCCGATAATTG
1 GCTC-TCATGAGCTTCCCGATATTTG
* *
15247660 GCTCGCAAGAGCTTCC
1 GCTCTCATGAGCTTCC
15247676 TGTTATACAA
Statistics
Matches: 144, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
23 6 0.04
24 63 0.44
25 74 0.51
26 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.34
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATATTTG
Found at i:15247623 original size:48 final size:47
Alignment explanation
Indices: 15247472--15247675 Score: 162
Period size: 48 Copynumber: 4.2 Consensus size: 47
15247462 AAGCTCTTAT
* * * *
15247472 GAGCATCCCGATATTTGGCTCTCATGAGTTTCCCGTTATTTGGCTATCCG
1 GAGCTTCCCGATA-TTGGCTCTCATGAGCTTCCCG--ATTTGGCTCTCCA
*
15247522 GAGCTTCCCGATAATTGGCTCTTATGAGCTTCCCGATTAAT-GCTCTCCA
1 GAGCTTCCCGAT-ATTGGCTCTCATGAGCTTCCCGATT--TGGCTCTCCA
* * * **
15247571 GAGCTTTCCGATATTGGCTCGCATGAGCTTCTCGAATTTGGCTCTCTT
1 GAGCTTCCCGATATTGGCTCTCATGAGCTTCCCG-ATTTGGCTCTCCA
* * * *
15247619 GAGCTTCCCG-TTTATGGCTCGT-ATGAGATTCCCGATAATTGGCTCGCAA
1 GAGCTTCCCGATAT-TGGCTC-TCATGAGCTTCCCGAT--TTGGCTCTCCA
15247668 GAGCTTCC
1 GAGCTTCC
15247676 TGTTATACAA
Statistics
Matches: 126, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
47 5 0.04
48 53 0.42
49 36 0.29
50 31 0.25
51 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (47 bp):
GAGCTTCCCGATATTGGCTCTCATGAGCTTCCCGATTTGGCTCTCCA
Found at i:15256392 original size:8 final size:8
Alignment explanation
Indices: 15256379--15256407 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15256369 TTATGTTTAG
15256379 TATATTAT
1 TATATTAT
15256387 TATATTAT
1 TATATTAT
15256395 TATATTAT
1 TATATTAT
15256403 TATAT
1 TATAT
15256408 AATAAAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:15256440 original size:5 final size:5
Alignment explanation
Indices: 15256430--15256475 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
15256420 TTATGTTTTA
15256430 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A
15256476 AATATAAACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:15257770 original size:15 final size:15
Alignment explanation
Indices: 15257750--15257806 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
15257740 CGATGAATTT
*
15257750 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
15257765 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
15257780 ATTGAAATTATATTG
1 ATTGAAATTATATTG
15257795 ATTG-AATTATAT
1 ATTGAAATTATAT
15257807 AATATATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:15258228 original size:21 final size:21
Alignment explanation
Indices: 15258204--15258286 Score: 121
Period size: 21 Copynumber: 4.0 Consensus size: 21
15258194 GTCGTATTTT
15258204 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCGTGTGTCGTATC
15258225 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCGTGTGTCGTATC
* *
15258246 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTATC
* **
15258267 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCGTGTGTCGTAT
15258287 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.14, C:0.24, G:0.28, T:0.34
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTATC
Found at i:15258263 original size:42 final size:42
Alignment explanation
Indices: 15258178--15258286 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
15258168 GGCTTTACTG
* * *
15258178 ATCAGGCACTTTATGTGTCGTATTTTAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
15258222 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
15258264 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
15258287 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 37 0.66
44 19 0.34
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.37
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:15269965 original size:19 final size:21
Alignment explanation
Indices: 15269924--15269966 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
15269914 TGATATAATC
* *
15269924 AAAAAATATAATGAGATTGTT
1 AAAAAATATAATGAAATTATT
15269945 AAAAAATA-AAT-AAATTATT
1 AAAAAATATAATGAAATTATT
15269964 AAA
1 AAA
15269967 TTTTAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 3 0.15
21 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAAAATATAATGAAATTATT
Found at i:15270168 original size:7 final size:7
Alignment explanation
Indices: 15270156--15270188 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
15270146 TACTTTTCTC
15270156 AAAAAAT
1 AAAAAAT
15270163 AAAAAAT
1 AAAAAAT
15270170 AAAAAAT
1 AAAAAAT
15270177 AAAAAAT
1 AAAAAAT
15270184 AAAAA
1 AAAAA
15270189 CAAGACTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:15280023 original size:51 final size:51
Alignment explanation
Indices: 15279939--15280050 Score: 152
Period size: 51 Copynumber: 2.2 Consensus size: 51
15279929 CTCAAACTTA
* *
15279939 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * * * * *
15279990 CTTTATATTTCATTCGGAATAATTGCTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
15280041 CTTCATATTT
1 CTTCATATTT
15280051 TATCTGGATA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:15281954 original size:2 final size:2
Alignment explanation
Indices: 15281947--15281981 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
15281937 GTTATTTTAA
15281947 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15281982 AACATACCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15285099 original size:13 final size:13
Alignment explanation
Indices: 15285081--15285105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15285071 ATTTCATGAG
15285081 GTGAAAAGAAAAC
1 GTGAAAAGAAAAC
15285094 GTGAAAAGAAAA
1 GTGAAAAGAAAA
15285106 AGGAGGCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.24, T:0.08
Consensus pattern (13 bp):
GTGAAAAGAAAAC
Found at i:15293091 original size:1 final size:1
Alignment explanation
Indices: 15293085--15293109 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
15293075 ATGAAGAAAT
15293085 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
15293110 CAAGAAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15298618 original size:44 final size:45
Alignment explanation
Indices: 15298556--15298651 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 45
15298546 TCGTATATTC
* * *
15298556 TTTGA-TTCAGTATTTAAACATGTAATAACTGGTG-AAGCCAATG
1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
* *
15298599 TTTGAGTTCTGTATTTAAACAAGTAAGAACTGGTGAAAGGCAATA
1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
15298644 TTTGAGTT
1 TTTGAGTT
15298652 GAGAGAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 5 0.11
44 26 0.57
45 15 0.33
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.35
Consensus pattern (45 bp):
TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
Found at i:15301820 original size:24 final size:23
Alignment explanation
Indices: 15301793--15301853 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 23
15301783 TAGCTCGAAA
*
15301793 GAGCGTCCCGTTGTTAGCTCTCAT
1 GAGCATCCCGTT-TTAGCTCTCAT
*
15301817 GAGCATCCCGATATTTGGCTCTCAT
1 GAGCATCCCG-T-TTTAGCTCTCAT
*
15301842 GAGCTTCCCGTT
1 GAGCATCCCGTT
15301854 AAATGGTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.03
24 10 0.31
25 20 0.62
26 1 0.03
ACGTcount: A:0.15, C:0.30, G:0.23, T:0.33
Consensus pattern (23 bp):
GAGCATCCCGTTTTAGCTCTCAT
Done.