Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 81 of 378
Found at i:21847605 original size:6 final size:5
Alignment explanation
Indices: 21847572--21847623 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
21847562 ATAAAAAGGG
* *
21847572 AAAG- AAAGG AAAG- AAAGA AAAGA AAAGA AAA-A GAGAGA AAAGA AAAGA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA -AAAGA AAAGA AAAGA
21847620 AAAG
1 AAAG
21847624 TTTTCATGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
4 9 0.21
5 32 0.76
6 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:21847610 original size:20 final size:20
Alignment explanation
Indices: 21847581--21847622 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
21847571 GAAAGAAAGG
21847581 AAAGAAAGAAAAGAAAAGAA
1 AAAGAAAGAAAAGAAAAGAA
*
21847601 AAAGAGAGAAAAGAAAAGAA
1 AAAGAAAGAAAAGAAAAGAA
21847621 AA
1 AA
21847623 GTTTTCATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAAGAAAAGAA
Found at i:21851369 original size:45 final size:44
Alignment explanation
Indices: 21851311--21851429 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 44
21851301 AGACATCATG
*
21851311 ATAAAGATGAGTAAGACCATAACTGAAAGATGTTATGGCATCACC
1 ATAAAGATGAGTAAGACCATAACTGAAAGATGCTATGGCATCA-C
* *
21851356 ATAAAGATCAGTAAGACCATAGAC-GAAACG-TGCTATGGCATCAT
1 ATAAAGATGAGTAAGACCATA-ACTGAAA-GATGCTATGGCATCAC
**
21851400 ATATAA-ATGAGTAAGACCATGGCTGAAAGA
1 ATA-AAGATGAGTAAGACCATAACTGAAAGA
21851430 CACTATGGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
43 2 0.03
44 20 0.32
45 38 0.60
46 3 0.05
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (44 bp):
ATAAAGATGAGTAAGACCATAACTGAAAGATGCTATGGCATCAC
Found at i:21855406 original size:38 final size:38
Alignment explanation
Indices: 21855364--21855437 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
21855354 CCAGTTGACC
*
21855364 CCTTAGTAGGGGATAAAATACTTGAAAACGAGTATACT
1 CCTTAGTAGGGGACAAAATACTTGAAAACGAGTATACT
* * *
21855402 CCTTAGTTGGGGACAACATACTTGAAAAGGAGTATA
1 CCTTAGTAGGGGACAAAATACTTGAAAACGAGTATA
21855438 TTTTACACGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (38 bp):
CCTTAGTAGGGGACAAAATACTTGAAAACGAGTATACT
Found at i:21856324 original size:45 final size:43
Alignment explanation
Indices: 21856257--21856477 Score: 176
Period size: 45 Copynumber: 4.9 Consensus size: 43
21856247 AGTTGTAAGC
*
21856257 ATAAAATGAGTAAGACCATAGCTAAATGATTCTATGTCATCATG
1 ATAAAATGAGTAAGACCATAGCTAAA-GATTCTATGACATCATG
* *
21856301 ATAAAGATGAGTAAGATCGTAGCTAAAAGATGT-TATGACATCACT-
1 ATAAA-ATGAGTAAGACCATAGCT-AAAGAT-TCTATGACATCA-TG
* * *
21856346 ATAAAAATGAGTAAAACCATAGCTGAAAGATGCTATGGCATCATG
1 AT-AAAATGAGTAAGACCATAGCT-AAAGATTCTATGACATCATG
* * * * *
21856391 ATATAAATGAATAAGACCATGGCTGAAAGATGCCATGGCATCATG
1 ATA-AAATGAGTAAGACCATAGCT-AAAGATTCTATGACATCATG
* * * * **
21856436 GTAAACAAGACTAAGACCATAACTGAAAGACACTATGACATC
1 ATAAA-ATGAGTAAGACCATAGCT-AAAGATTCTATGACATC
21856478 CTAGTAGTCT
Statistics
Matches: 146, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.06
45 129 0.88
46 8 0.05
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.24
Consensus pattern (43 bp):
ATAAAATGAGTAAGACCATAGCTAAAGATTCTATGACATCATG
Found at i:21856420 original size:90 final size:90
Alignment explanation
Indices: 21856259--21856422 Score: 224
Period size: 90 Copynumber: 1.8 Consensus size: 90
21856249 TTGTAAGCAT
* * * * * *
21856259 AAAATGAGTAAGACCATAGCTAAATGATTCTATGTCATCATGATAAAGATGAGTAAGATCGTAGC
1 AAAATGAGTAAAACCATAGCTAAATGATGCTATGGCATCATGATAAAGATGAATAAGACCATAGC
21856324 TAAAAGATGTTATGACATCACTATA
66 TAAAAGATGTTATGACATCACTATA
*
21856349 AAAATGAGTAAAACCATAGCTGAAA-GATGCTATGGCATCATGATATAA-ATGAATAAGACCATG
1 AAAATGAGTAAAACCATAGCT-AAATGATGCTATGGCATCATGATA-AAGATGAATAAGACCATA
*
21856412 GCTGAAAGATG
64 GCTAAAAGATG
21856423 CCATGGCATC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 59 0.92
91 5 0.08
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (90 bp):
AAAATGAGTAAAACCATAGCTAAATGATGCTATGGCATCATGATAAAGATGAATAAGACCATAGC
TAAAAGATGTTATGACATCACTATA
Found at i:21856455 original size:90 final size:90
Alignment explanation
Indices: 21856259--21856465 Score: 215
Period size: 90 Copynumber: 2.3 Consensus size: 90
21856249 TTGTAAGCAT
* * * * * *
21856259 AAAATGAGTAAGACCATAGCT-AAATGATTCTATGTCATCATGATAAAGATGAGTAAGATCGTAG
1 AAAATGACTAAGACCATAGCTGAAA-GATGCTATGGCATCATGATAAAGATGAATAAGACCATAG
**
21856323 CTAAAAGATGTTATGACATCACTATA
65 CTAAAAGATGCCATGACATCACTATA
* * *
21856349 AAAATGAGTAAAACCATAGCTGAAAGATGCTATGGCATCATGATATAA-ATGAATAAGACCATGG
1 AAAATGACTAAGACCATAGCTGAAAGATGCTATGGCATCATGATA-AAGATGAATAAGACCATAG
* * *
21856413 CTGAAAGATGCCATGGCATCA-TGGTA
65 CTAAAAGATGCCATGACATCACT-ATA
*
21856439 AACAA-GACTAAGACCATAACTGAAAGA
1 AA-AATGACTAAGACCATAGCTGAAAGA
21856466 CACTATGACA
Statistics
Matches: 98, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
89 1 0.01
90 90 0.92
91 7 0.07
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.23
Consensus pattern (90 bp):
AAAATGACTAAGACCATAGCTGAAAGATGCTATGGCATCATGATAAAGATGAATAAGACCATAGC
TAAAAGATGCCATGACATCACTATA
Found at i:21859156 original size:6 final size:6
Alignment explanation
Indices: 21859145--21859171 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21859135 TGCCGAATCG
21859145 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
21859172 GTCGACACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:21859161 original size:51 final size:50
Alignment explanation
Indices: 21859044--21859188 Score: 167
Period size: 45 Copynumber: 3.0 Consensus size: 50
21859034 AAAAAATCCA
* * * **
21859044 GAATAGTAACAGTAACAGTAAAAGTAACAGTATTCAACACACAAAGTGTT
1 GAATCGTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCC
*
21859094 GAATCG---C--TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCC
1 GAATCGTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCC
* *
21859139 GAATCGGTAACAGTAACAGTAACAGTAACAGTAGTCGACACA-TAAGTGCC
1 GAATC-GTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCC
21859189 TGATCAGTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
45 38 0.47
46 1 0.01
47 1 0.01
49 1 0.01
50 12 0.15
51 27 0.34
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (50 bp):
GAATCGTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCC
Found at i:21861186 original size:64 final size:64
Alignment explanation
Indices: 21861105--21861289 Score: 196
Period size: 67 Copynumber: 2.9 Consensus size: 64
21861095 AGACATTATG
* *
21861105 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
21861169 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
21861234 AA
63 AA
* * * *
21861236 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCT
21861290 GAACTATTGA
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:21862374 original size:2 final size:2
Alignment explanation
Indices: 21862367--21862395 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21862357 TCATGACATG
21862367 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21862396 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21863988 original size:27 final size:27
Alignment explanation
Indices: 21863940--21864044 Score: 108
Period size: 27 Copynumber: 3.9 Consensus size: 27
21863930 GCGAGGCTGC
* * *
21863940 CAGATATTGTGACA-AAGTCACCAAATA
1 CAGATATTGTGGCAGAA-CCACCAGATA
21863967 CAGATATTGTGGCAGAACCACCAGA-A
1 CAGATATTGTGGCAGAACCACCAGATA
*
21863993 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAACCACCAGATA
* *
21864020 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAACCACCAG
21864045 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.12
27 57 0.83
28 4 0.06
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAACCACCAGATA
Found at i:21864033 original size:54 final size:53
Alignment explanation
Indices: 21863940--21864044 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 53
21863930 GCGAGGCTGC
*
21863940 CAGATATTGTGACAAAGTCACCAAATACAGATATTGTGGCAGAACCACCAGAA
1 CAGATATTGTGACAAAGCCACCAAATACAGATATTGTGGCAGAACCACCAGAA
* * * * *
21863993 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 CAGATAT-TGTGACAAAGCCACCAAATACAGAT-ATTGTGGCAGAACCACCAG
21864045 GACGCTTCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 12 0.27
54 32 0.73
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAAAGCCACCAAATACAGATATTGTGGCAGAACCACCAGAA
Found at i:21865658 original size:26 final size:26
Alignment explanation
Indices: 21865627--21865760 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
21865617 TGAAATGCCC
*
21865627 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
21865653 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
21865679 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
21865705 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21865731 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21865757 ATCA
1 ATCA
21865761 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21871081 original size:27 final size:27
Alignment explanation
Indices: 21871033--21871138 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
21871023 GCGAGGCTGC
* *
21871033 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
21871060 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
21871086 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
21871113 CAGATAATTGTGGCATAGCCACCAGA
1 CAGAT-ATTGTGGCAGAGCCACCAGA
21871139 ACGCTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 61 0.85
28 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:21872767 original size:26 final size:26
Alignment explanation
Indices: 21872736--21872869 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
21872726 TGAAATGCCC
*
21872736 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
21872762 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
21872788 ATCATGGAATATATACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
21872814 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21872840 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21872866 ATCA
1 ATCA
21872870 ATTTGTATCA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21874601 original size:16 final size:16
Alignment explanation
Indices: 21874580--21874618 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
21874570 AATTTTCCCC
* *
21874580 TTTTTCCTTCTTTCTT
1 TTTTTCCGTCCTTCTT
21874596 TTTTTCCGTCCTTCTT
1 TTTTTCCGTCCTTCTT
*
21874612 TCTTTCC
1 TTTTTCC
21874619 CCTGCTCTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTTTCCGTCCTTCTT
Found at i:21874675 original size:15 final size:18
Alignment explanation
Indices: 21874647--21874688 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
21874637 TCATCCTTTC
21874647 TTTCTTTATCTATT-CTT
1 TTTCTTTATCTATTCCTT
21874664 TTTCTTT-T-TATTCCTT
1 TTTCTTTATCTATTCCTT
*
21874680 TTACTTTAT
1 TTTCTTTAT
21874689 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 4 0.18
16 10 0.45
17 8 0.36
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTCTTTATCTATTCCTT
Found at i:21878122 original size:38 final size:38
Alignment explanation
Indices: 21878080--21878156 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
21878070 GGTTTTAGGT
* *
21878080 ACAAGAATGGTTCTCATACTTGCTTATAATCCATTGGG
1 ACAAGAATGGCTCCCATACTTGCTTATAATCCATTGGG
*
21878118 ACAAGAATGGCTCCCATACTTTCTTATAATCCATTGGG
1 ACAAGAATGGCTCCCATACTTGCTTATAATCCATTGGG
21878156 A
1 A
21878157 TCCCAGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (38 bp):
ACAAGAATGGCTCCCATACTTGCTTATAATCCATTGGG
Found at i:21883297 original size:62 final size:62
Alignment explanation
Indices: 21883200--21883325 Score: 216
Period size: 62 Copynumber: 2.0 Consensus size: 62
21883190 TAGATTCTTA
* *
21883200 GTATCGCTCAGCAAGGTTCCTTGTGGTCTATTACGAAGCTCCGTAGCTAACTGACCCATTTG
1 GTATCGCTCAACAAGGTTCCTTGTGGTCTATTACGAAGCTCCGTAGCTAACTAACCCATTTG
* *
21883262 GTATCGCTCAACAAGGTTCCTTGTGGTCTATTACGAAGCTCCGTAGTTAACTAACCTATTTG
1 GTATCGCTCAACAAGGTTCCTTGTGGTCTATTACGAAGCTCCGTAGCTAACTAACCCATTTG
21883324 GT
1 GT
21883326 TTTCCAAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (62 bp):
GTATCGCTCAACAAGGTTCCTTGTGGTCTATTACGAAGCTCCGTAGCTAACTAACCCATTTG
Found at i:21886493 original size:131 final size:131
Alignment explanation
Indices: 21886365--21886621 Score: 284
Period size: 131 Copynumber: 2.0 Consensus size: 131
21886355 AGTTTTTAAT
* *
21886365 AAACATGAGTGAAAACTTAAAGGAATATTCGATTGTTTTGAGCAAACG-AGAAATCACAACCCAG
1 AAACATGAGTGAAAACTTAAAGGAATATTCGATTATTTTGAGCAAACGCA-AAATCACAACCCAA
* * *
21886429 CACGGTAGGGCATGATTCC-CAAATTGTCAAACGCCAAATATTGCCTTCGTTTTAAATGAATTTT
65 CACGGTAGGGCACGATTCCACAAATTGTCAAACACCAAATATCGCCTTCGTTTTAAAT-AATTTT
21886493 AGA
129 AGA
* ** * * * * * ** *
21886496 AGACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGTAAGCGCAAAATTGCAACCTAAC
1 AAACATGAGTGAAAACTTAAAGGAATATTCGATTATTTTGAGCAAACGCAAAATCACAACCCAAC
* * * * * *
21886561 ACGTTAGGGCACGATTCCACGAATTTTCAAATATCGAATATCGCCTTCGTTTTAAATAATT
66 ACGGTAGGGCACGATTCCACAAATTGTCAAACACCAAATATCGCCTTCGTTTTAAATAATT
21886622 GTGAAACTAG
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
131 70 0.69
132 32 0.31
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (131 bp):
AAACATGAGTGAAAACTTAAAGGAATATTCGATTATTTTGAGCAAACGCAAAATCACAACCCAAC
ACGGTAGGGCACGATTCCACAAATTGTCAAACACCAAATATCGCCTTCGTTTTAAATAATTTTAG
A
Found at i:21887404 original size:23 final size:23
Alignment explanation
Indices: 21887360--21887404 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
21887350 AAGAGACATT
*
21887360 CAAAAATAATAATTTTATAATTA
1 CAAAAATAATAATTTTAAAATTA
*
21887383 CAAAAATGA-AATTTCTAAAATT
1 CAAAAATAATAATTT-TAAAATT
21887405 GTTTCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (23 bp):
CAAAAATAATAATTTTAAAATTA
Found at i:21901345 original size:131 final size:132
Alignment explanation
Indices: 21901217--21901467 Score: 299
Period size: 131 Copynumber: 1.9 Consensus size: 132
21901207 AGTTTTTAAT
* *
21901217 AAACATGACTAAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACG-AGAAATCACAACCCAG
1 AAACATGACTAAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGCA-AAATCACAACCCAA
* * *
21901281 CACGGTAGGGCATGATTCC-CGAATTGTCAAACGCCGAATATTGCCTTCGTTTTAATTGAATTTT
65 CACGGTAGGGCACGATTCCACGAATTGTCAAACACCGAATATCGCCTTCGTTTTAATTGAATTTT
21901345 AGA
130 AGA
* * * *** * * * **
21901348 AGACATGAGTGAAATTTTGAAGGAATATTTGATTATTTTGAGCAAGCGCAAAATTGCAACCCAAC
1 AAACATGACTAAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGCAAAATCACAACCCAAC
* * * *
21901413 ACGTTAGGGCACGATTCCACGAATTTTCAAATATCGAATATCGCCTTCGTTTTAA
66 ACGGTAGGGCACGATTCCACGAATTGTCAAACACCGAATATCGCCTTCGTTTTAA
21901468 ATAATTGTGA
Statistics
Matches: 98, Mismatches: 20, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
131 66 0.67
132 32 0.33
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (132 bp):
AAACATGACTAAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGCAAAATCACAACCCAAC
ACGGTAGGGCACGATTCCACGAATTGTCAAACACCGAATATCGCCTTCGTTTTAATTGAATTTTA
GA
Found at i:21902256 original size:23 final size:23
Alignment explanation
Indices: 21902212--21902256 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
21902202 AGGAGACATT
*
21902212 CAAAAATAATAATTTTATAATTA
1 CAAAAATAATAATTTTAAAATTA
21902235 CAAAAATAA-AATTTCTAAAATT
1 CAAAAATAATAATTT-TAAAATT
21902257 GTTTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (23 bp):
CAAAAATAATAATTTTAAAATTA
Found at i:21907623 original size:30 final size:30
Alignment explanation
Indices: 21907589--21907649 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21907579 TCCTTAACTC
*
21907589 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
* * * *
21907619 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
21907649 A
1 A
21907650 GCTCGGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGACAAAATTACAATTTTGCCCCT
Found at i:21909847 original size:2 final size:2
Alignment explanation
Indices: 21909840--21909870 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
21909830 GAGACTAGTC
21909840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21909871 CATGTCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21911883 original size:30 final size:30
Alignment explanation
Indices: 21911849--21911909 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21911839 TTCTTAACTC
*
21911849 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
* * * *
21911879 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
21911909 A
1 A
21911910 GCTCGGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTACCCCT
Found at i:21913376 original size:41 final size:41
Alignment explanation
Indices: 21913321--21913406 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
21913311 AAATACATTT
21913321 AAAACAAATATTAAAACAAGAAACAAATAAAAAAT-TATATA
1 AAAACAAATATTAAAACAAGAAACAAATAAAAAATATA-ATA
* * * * **
21913362 AAAACAATTCTTAAAACAATACACAAATTTAAAATATAATA
1 AAAACAAATATTAAAACAAGAAACAAATAAAAAATATAATA
21913403 AAAA
1 AAAA
21913407 GTGATTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 36 0.95
42 2 0.05
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.22
Consensus pattern (41 bp):
AAAACAAATATTAAAACAAGAAACAAATAAAAAATATAATA
Found at i:21920019 original size:42 final size:42
Alignment explanation
Indices: 21919960--21920059 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
21919950 TATCGACGCC
*
21919960 ACACGGGTGTGTGGTCGCCCGTGTGGTAGGCCATGTGCCCTA
1 ACACGGGCGTGTGGTCGCCCGTGTGGTAGGCCATGTGCCCTA
**
21920002 ACACGGGCGTGTGGTCGCCCGTGTGGTAGGCTGTGTGCCCTA
1 ACACGGGCGTGTGGTCGCCCGTGTGGTAGGCCATGTGCCCTA
21920044 ACACGGGCGTGTGGTC
1 ACACGGGCGTGTGGTC
21920060 AACGAGACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.11, C:0.26, G:0.40, T:0.23
Consensus pattern (42 bp):
ACACGGGCGTGTGGTCGCCCGTGTGGTAGGCCATGTGCCCTA
Found at i:21920729 original size:34 final size:35
Alignment explanation
Indices: 21920686--21920755 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
21920676 ACTGATGATA
21920686 TGATAGGCTAAGGCCCTAATGCATA-CTGATACTG
1 TGATAGGCTAAGGCCCTAATGCATATCTGATACTG
* * * *
21920720 TGATGGGCTAAGGCTCTACTGCATATTTGATACTG
1 TGATAGGCTAAGGCCCTAATGCATATCTGATACTG
21920755 T
1 T
21920756 ATTGAGATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 22 0.71
35 9 0.29
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (35 bp):
TGATAGGCTAAGGCCCTAATGCATATCTGATACTG
Found at i:21921257 original size:18 final size:18
Alignment explanation
Indices: 21921234--21921275 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
21921224 TCGACTAAAT
*
21921234 AAATAAAATGATTTTTGG
1 AAATAAAACGATTTTTGG
*
21921252 AAATAATACGATTTTTGG
1 AAATAAAACGATTTTTGG
21921270 AAATAA
1 AAATAA
21921276 TAAGATCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (18 bp):
AAATAAAACGATTTTTGG
Found at i:21921276 original size:18 final size:18
Alignment explanation
Indices: 21921243--21921277 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
21921233 TAAATAAAAT
21921243 GATTTTTGGAAATAATAC
1 GATTTTTGGAAATAATAC
21921261 GATTTTTGGAAATAATA
1 GATTTTTGGAAATAATA
21921278 AGATCTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (18 bp):
GATTTTTGGAAATAATAC
Found at i:21928871 original size:71 final size:71
Alignment explanation
Indices: 21928783--21928946 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
21928773 GAGATGTATC
21928783 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
21928848 AGGACA
66 AGGACA
*
21928854 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
21928919 CGGACA
66 AGGACA
21928925 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
21928947 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:21936414 original size:71 final size:71
Alignment explanation
Indices: 21936326--21936489 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
21936316 GAGATGTATC
21936326 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
21936391 AGGACA
66 AGGACA
*
21936397 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
21936462 CGGACA
66 AGGACA
21936468 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
21936490 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:21939187 original size:43 final size:43
Alignment explanation
Indices: 21939139--21939245 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
21939129 GATAAACGGA
**
21939139 TCTCCAAAAACAACCAATATAATGTGTAGCATAAAGCTATCAC
1 TCTCCAAGCACAACCAATATAATGTGTAGCATAAAGCTATCAC
*
21939182 TCTCCAAGCACAACTAATATAATGTGTAGCATAAAGCTATCAC
1 TCTCCAAGCACAACCAATATAATGTGTAGCATAAAGCTATCAC
*
21939225 ACTCCAAGCACAACCAATATA
1 TCTCCAAGCACAACCAATATA
21939246 CCCTCCAAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.43, C:0.25, G:0.09, T:0.22
Consensus pattern (43 bp):
TCTCCAAGCACAACCAATATAATGTGTAGCATAAAGCTATCAC
Found at i:21939251 original size:22 final size:22
Alignment explanation
Indices: 21939226--21939348 Score: 69
Period size: 22 Copynumber: 5.7 Consensus size: 22
21939216 AGCTATCACA
21939226 CTCCAAGCACAACCAATATACC
1 CTCCAAGCACAACCAATATACC
* * *
21939248 CTCCAAACACAACTAATATAAC
1 CTCCAAGCACAACCAATATACC
* ** * *
21939270 AT-GTAGCATAA--AGCTATCACC
1 CTCCAAGCACAACCA-ATAT-ACC
*
21939291 CTCTAAGCACAACCAATATACC
1 CTCCAAGCACAACCAATATACC
* *
21939313 CT-CAAACACAACTAATAT-CTC
1 CTCCAAGCACAACCAATATAC-C
21939334 CTCCACA-CACAACCA
1 CTCCA-AGCACAACCA
21939349 TAAAGTGGTG
Statistics
Matches: 74, Mismatches: 19, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
19 1 0.01
20 4 0.05
21 24 0.32
22 40 0.54
23 4 0.05
24 1 0.01
ACGTcount: A:0.42, C:0.36, G:0.04, T:0.18
Consensus pattern (22 bp):
CTCCAAGCACAACCAATATACC
Found at i:21939287 original size:65 final size:65
Alignment explanation
Indices: 21939183--21939330 Score: 244
Period size: 65 Copynumber: 2.3 Consensus size: 65
21939173 AGCTATCACT
* **
21939183 CTCCAAGCACAACTAATATAATGTGTAGCATAAAGCTATCACACTCCAAGCACAACCAATATACC
1 CTCCAAACACAACTAATATAACATGTAGCATAAAGCTATCACACTCCAAGCACAACCAATATACC
* *
21939248 CTCCAAACACAACTAATATAACATGTAGCATAAAGCTATCACCCTCTAAGCACAACCAATATACC
1 CTCCAAACACAACTAATATAACATGTAGCATAAAGCTATCACACTCCAAGCACAACCAATATACC
21939313 CT-CAAACACAACTAATAT
1 CTCCAAACACAACTAATAT
21939331 CTCCTCCACA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
64 16 0.21
65 62 0.79
ACGTcount: A:0.43, C:0.30, G:0.07, T:0.20
Consensus pattern (65 bp):
CTCCAAACACAACTAATATAACATGTAGCATAAAGCTATCACACTCCAAGCACAACCAATATACC
Found at i:21939324 original size:21 final size:21
Alignment explanation
Indices: 21939288--21939348 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
21939278 TAAAGCTATC
*
21939288 ACCCTCTAAGCACAACCAATAT
1 ACCCTC-AAACACAACCAATAT
*
21939310 ACCCTCAAACACAACTAATAT
1 ACCCTCAAACACAACCAATAT
*
21939331 -CTCCTCCACACACAACCA
1 AC-CCT-CAAACACAACCA
21939349 TAAAGTGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 16 0.48
22 16 0.48
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.16
Consensus pattern (21 bp):
ACCCTCAAACACAACCAATAT
Found at i:21942228 original size:127 final size:127
Alignment explanation
Indices: 21941997--21942259 Score: 481
Period size: 127 Copynumber: 2.1 Consensus size: 127
21941987 TTCCTCCCTT
* *
21941997 TTTCAAATCAGTCCTTTTGTTTAATTAAAATATATATTCTTAATTATTTTCAAATTGGGTTCCGT
1 TTTCTAATCAGTCCTTTTGTTTAATTAAAACATATATTCTTAATTATTTTCAAATTGGGTTCCGT
21942062 TTTTAAAATCCATTTTAAACAAATAAATTCCCGAACACTTAATTTTAATTTCCCCTATTAAA
66 TTTTAAAATCCATTTTAAACAAATAAATTCCCGAACACTTAATTTTAATTTCCCCTATTAAA
*
21942124 TTTCTAATCAGTCCTTTTGTTTAATTAAGACATATATTCTTAATTATTTTCAAATTGGGTTCCGT
1 TTTCTAATCAGTCCTTTTGTTTAATTAAAACATATATTCTTAATTATTTTCAAATTGGGTTCCGT
* *
21942189 TTTTAAAATCCATTTTAAACAAATGAATTCCCGAACACTTAATTTTAATTTTCCCTATTAAA
66 TTTTAAAATCCATTTTAAACAAATAAATTCCCGAACACTTAATTTTAATTTCCCCTATTAAA
21942251 TTTCTAATC
1 TTTCTAATC
21942260 CCAAATATTA
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 131 1.00
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (127 bp):
TTTCTAATCAGTCCTTTTGTTTAATTAAAACATATATTCTTAATTATTTTCAAATTGGGTTCCGT
TTTTAAAATCCATTTTAAACAAATAAATTCCCGAACACTTAATTTTAATTTCCCCTATTAAA
Found at i:21945514 original size:22 final size:22
Alignment explanation
Indices: 21945489--21945532 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
21945479 TAGTCATATA
21945489 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
21945511 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
21945533 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:21945573 original size:13 final size:13
Alignment explanation
Indices: 21945552--21945576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21945542 TTTTAATTTT
21945552 ATTTTAATAATAA
1 ATTTTAATAATAA
21945565 ATTTTAATAATA
1 ATTTTAATAATA
21945577 CATATTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:21946121 original size:13 final size:14
Alignment explanation
Indices: 21946084--21946135 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
21946074 CTAGAAAAAT
21946084 AAATTA-TTTTCTAA
1 AAATTATTTTTC-AA
21946098 AAATTATTTTTCAA
1 AAATTATTTTTCAA
*
21946112 AAATTATTTTTCGA
1 AAATTATTTTTCAA
21946126 AAA-TATTTTT
1 AAATTATTTTT
21946136 AGTAAAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
13 7 0.19
14 24 0.67
15 5 0.14
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (14 bp):
AAATTATTTTTCAA
Found at i:21946142 original size:14 final size:14
Alignment explanation
Indices: 21946084--21946142 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
21946074 CTAGAAAAAT
21946084 AAATTATTTTCTA-A
1 AAATTATTTT-TAGA
21946098 AAATTATTTTTCA-A
1 AAATTATTTTT-AGA
*
21946112 AAATTATTTTTCGA
1 AAATTATTTTTAGA
21946126 AAA-TATTTTTAGTA
1 AAATTATTTTTAG-A
21946140 AAA
1 AAA
21946143 CAAATGGAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
13 9 0.22
14 31 0.77
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.47
Consensus pattern (14 bp):
AAATTATTTTTAGA
Found at i:21951236 original size:24 final size:24
Alignment explanation
Indices: 21951209--21951257 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
21951199 TTAAATTCTT
* *
21951209 TAAAATATAATTATATGGATTAAA
1 TAAAATATAAATATACGGATTAAA
21951233 TAAAATATAAATATACGGATTAAA
1 TAAAATATAAATATACGGATTAAA
21951257 T
1 T
21951258 TTCAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (24 bp):
TAAAATATAAATATACGGATTAAA
Found at i:21956251 original size:18 final size:18
Alignment explanation
Indices: 21956228--21956265 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
21956218 TACAAGGTGC
*
21956228 GTATCCTAGCCATTATAT
1 GTATCCTAACCATTATAT
*
21956246 GTATCCTAACCCTTATAT
1 GTATCCTAACCATTATAT
21956264 GT
1 GT
21956266 TTTCTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCATTATAT
Found at i:21956544 original size:21 final size:22
Alignment explanation
Indices: 21956514--21956563 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
21956504 ACACCCACAA
*
21956514 CCAGAA-CAACCACAACCTTCG
1 CCAGAAGCAACCACAACCTCCG
21956535 CCA-AAGCAACCACAACCTCCG
1 CCAGAAGCAACCACAACCTCCG
21956556 CCAGAAGC
1 CCAGAAGC
21956564 TGAATCAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 20 0.77
22 4 0.15
ACGTcount: A:0.38, C:0.44, G:0.12, T:0.06
Consensus pattern (22 bp):
CCAGAAGCAACCACAACCTCCG
Found at i:21960308 original size:127 final size:126
Alignment explanation
Indices: 21959804--21960328 Score: 658
Period size: 126 Copynumber: 4.2 Consensus size: 126
21959794 TAAGGCTAAG
* * **
21959804 CAGGAACTACTGTAGAAAAGGAGCGTCCACATGGAAGTTTTTTTTTGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
21959869 ATCCTGCTTGAAGCGTTTTTTAA-ACTATTTTTTCATAATCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGC-ATTTTTAACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
** * * * *
21959930 CAATAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTACTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
21959995 ATCCTGCTTGAAGCCTTTTTTACACTATTTTCTCAAAACTGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTAACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* * * * * **
21960056 CAGGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAACGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * *
21960121 ATCTTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTATTTTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTAACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* * *
21960182 TAGGAACTACTGTAGAGAAAGAGCGTTCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTTG
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAG-TG
* * * * *
21960247 CATCCTGCTTGAAACATTCTTAACATTATCTTTTT-AGAACCGTCTTCTCAAAATTAATTTTT
65 CATCCTGCTTGAAGCATTTTTAACACTAT-TTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* *
21960309 CTGAAACTACTGTAGAAAAA
1 CAGGAACTACTGTAGAAAAA
21960329 AAAAACAAAA
Statistics
Matches: 342, Mismatches: 54, Indels: 5
0.85 0.13 0.01
Matches are distributed among these distances:
125 6 0.02
126 268 0.78
127 63 0.18
128 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCATTTTTAACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
Found at i:21960457 original size:32 final size:32
Alignment explanation
Indices: 21960415--21960545 Score: 140
Period size: 32 Copynumber: 4.0 Consensus size: 32
21960405 CAAACACAAA
*
21960415 AATTATTTTTTAAAAAAACTAAACCCTAATTT
1 AATTAATTTTTAAAAAAACTAAACCCTAATTT
* *
21960447 AATTAATTTTTTAAAAAACTTAAACCTTAATTT
1 AATTAATTTTTAAAAAAAC-TAAACCCTAATTT
*** *
21960480 AATTAATTTATTTAAAACCCCTAAAACCTAATTT
1 AATTAA-TT-TTTAAAAAAACTAAACCCTAATTT
21960514 AATTAA--TTTAAAAAAACTCTAAACCCTAATTT
1 AATTAATTTTTAAAAAAA--CTAAACCCTAATTT
21960546 TTTTAAAACT
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
30 7 0.09
32 30 0.37
33 18 0.22
34 19 0.23
35 7 0.09
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (32 bp):
AATTAATTTTTAAAAAAACTAAACCCTAATTT
Found at i:21960461 original size:33 final size:33
Alignment explanation
Indices: 21960415--21960545 Score: 146
Period size: 33 Copynumber: 4.0 Consensus size: 33
21960405 CAAACACAAA
21960415 AATT-ATTTTTTAAAAAAACTAAACCCTAATTT
1 AATTAATTTTTTAAAAAAACTAAACCCTAATTT
*
21960447 AATTAATTTTTT-AAAAAACTTAAACCTTAATTT
1 AATTAATTTTTTAAAAAAAC-TAAACCCTAATTT
*** *
21960480 AATTAATTTATTTAAAACCCCTAAAACCTAATTT
1 AATTAATTT-TTTAAAAAAACTAAACCCTAATTT
21960514 AATTAA---TTTAAAAAAACTCTAAACCCTAATTT
1 AATTAATTTTTTAAAAAAA--CTAAACCCTAATTT
21960546 TTTTAAAACT
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
30 7 0.08
32 24 0.29
33 28 0.34
34 20 0.24
35 4 0.05
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (33 bp):
AATTAATTTTTTAAAAAAACTAAACCCTAATTT
Found at i:21960616 original size:22 final size:23
Alignment explanation
Indices: 21960591--21960636 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
21960581 TTATTTTAAC
21960591 AAAACACTAACAC-CAC-AACCCT
1 AAAACACTAA-ACTCACAAACCCT
*
21960613 AAAACCCTAAACTCACAAACCCT
1 AAAACACTAAACTCACAAACCCT
21960636 A
1 A
21960637 GGCACTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 12 0.57
23 7 0.33
ACGTcount: A:0.50, C:0.39, G:0.00, T:0.11
Consensus pattern (23 bp):
AAAACACTAAACTCACAAACCCT
Found at i:21971667 original size:18 final size:18
Alignment explanation
Indices: 21971632--21971674 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
21971622 CGCATAAAAA
* * *
21971632 GAAAGCAAATAAATAAAT
1 GAAAGAAAAGAAACAAAT
21971650 GAAAGAAAAGAAACAAAT
1 GAAAGAAAAGAAACAAAT
21971668 GAAAGAA
1 GAAAGAA
21971675 GGGGGAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.05, G:0.16, T:0.09
Consensus pattern (18 bp):
GAAAGAAAAGAAACAAAT
Found at i:21973515 original size:10 final size:10
Alignment explanation
Indices: 21973450--21973537 Score: 85
Period size: 10 Copynumber: 9.1 Consensus size: 10
21973440 TAAATAAGTG
*
21973450 CTCTCTCTCT
1 CTCTCTCCCT
* *
21973460 CTCTGTCTCT
1 CTCTCTCCCT
* *
21973470 TTCTCTCTCT
1 CTCTCTCCCT
21973480 CTCTCTCCCT
1 CTCTCTCCCT
21973490 CTCTCT--CT
1 CTCTCTCCCT
21973498 CTCTCTCCCT
1 CTCTCTCCCT
*
21973508 CTCTCTCCCCC
1 CTCTCT-CCCT
21973519 CTCTCTCCC-
1 CTCTCTCCCT
21973528 C-CTCTCCCT
1 CTCTCTCCCT
21973537 C
1 C
21973538 AGATCAAAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
8 15 0.22
9 2 0.03
10 42 0.62
11 9 0.13
ACGTcount: A:0.00, C:0.57, G:0.01, T:0.42
Consensus pattern (10 bp):
CTCTCTCCCT
Found at i:21973525 original size:2 final size:2
Alignment explanation
Indices: 21973450--21973514 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
21973440 TAAATAAGTG
* * *
21973450 CT CT CT CT CT CT CT GT CT CT TT CT CT CT CT CT CT CT CC CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
21973492 CT CT CT CT CT CT CC CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT C
21973515 CCCCCTCTCT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.51, G:0.02, T:0.48
Consensus pattern (2 bp):
CT
Found at i:21974877 original size:21 final size:20
Alignment explanation
Indices: 21974851--21974893 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
21974841 ATTTGTACTT
21974851 TCTCTCTCCCTCCCCCCTCTC
1 TCTCTCTCCCT-CCCCCTCTC
*
21974872 TCTCTCTCTCTCCCCCTCTC
1 TCTCTCTCCCTCCCCCTCTC
21974892 TC
1 TC
21974894 ATGCAAAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (20 bp):
TCTCTCTCCCTCCCCCTCTC
Found at i:21979665 original size:20 final size:20
Alignment explanation
Indices: 21979619--21979656 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
21979609 CCAATTTTTT
*
21979619 TTACTTTCATTTGCATTTCA
1 TTACTTTCAATTGCATTTCA
21979639 TTACTTTCAATTGCATTT
1 TTACTTTCAATTGCATTT
21979657 ACTTTCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.05, T:0.55
Consensus pattern (20 bp):
TTACTTTCAATTGCATTTCA
Found at i:21982851 original size:25 final size:20
Alignment explanation
Indices: 21982803--21982842 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
21982793 CTCTTTTCCA
21982803 TAACTTTTCATCTAATCTAT
1 TAACTTTTCATCTAATCTAT
21982823 TAACTTTTCATCTAATCTAT
1 TAACTTTTCATCTAATCTAT
21982843 ACATTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (20 bp):
TAACTTTTCATCTAATCTAT
Found at i:21988182 original size:12 final size:12
Alignment explanation
Indices: 21988165--21988198 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
21988155 TCCAACAAGG
21988165 GGCACACGCCAA
1 GGCACACGCCAA
21988177 GGCACACGCCAA
1 GGCACACGCCAA
21988189 GGCACACGCC
1 GGCACACGCC
21988199 CGTGGCCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.29, C:0.44, G:0.26, T:0.00
Consensus pattern (12 bp):
GGCACACGCCAA
Found at i:21989532 original size:16 final size:16
Alignment explanation
Indices: 21989513--21989543 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21989503 CTTCTTCACT
21989513 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
21989529 TACTTACTTACTTAA
1 TACTCACTTACTTAA
21989544 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:21989549 original size:20 final size:20
Alignment explanation
Indices: 21989510--21989549 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21989500 AAACTTCTTC
* *
21989510 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
21989530 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
21989550 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:21989925 original size:55 final size:53
Alignment explanation
Indices: 21989794--21989989 Score: 209
Period size: 55 Copynumber: 3.6 Consensus size: 53
21989784 CCTACCATTT
*
21989794 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * * *
21989847 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATG
*** *
21989902 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TG
* *
21989957 CCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGA-CATGGTCTTACATGGGATCCTT
21989990 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 37 0.31
54 9 0.07
55 71 0.59
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:21997379 original size:24 final size:24
Alignment explanation
Indices: 21997320--21997380 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
21997310 ACGTATCGGT
21997320 ACTTATAGAATACGCCACAAAGGC
1 ACTTATAGAATACGCCACAAAGGC
* * *
21997344 ATTTACACAATACGCCACAAAGGC
1 ACTTATAGAATACGCCACAAAGGC
21997368 ACTTATAGAATAC
1 ACTTATAGAATAC
21997381 CCTTCCTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.43, C:0.25, G:0.13, T:0.20
Consensus pattern (24 bp):
ACTTATAGAATACGCCACAAAGGC
Found at i:21998104 original size:30 final size:30
Alignment explanation
Indices: 21998039--21998122 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
21998029 AGCACGACAT
21998039 TCATCGGCTTCTGTCAGACACAATCAGTAG
1 TCATCGGCTTCTGTCAGACACAATCAGTAG
* *
21998069 CCATCGGCTTCTGTCAGACGCAATC-GATAG
1 TCATCGGCTTCTGTCAGACACAATCAG-TAG
** * *
21998099 TCATCGATTTTTGTCACACACAAT
1 TCATCGGCTTCTGTCAGACACAAT
21998123 TGGTAGTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
29 1 0.02
30 44 0.98
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (30 bp):
TCATCGGCTTCTGTCAGACACAATCAGTAG
Found at i:22003773 original size:47 final size:48
Alignment explanation
Indices: 22003719--22003813 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 48
22003709 AACATAAAAG
22003719 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAA-ATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
22003766 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
22003814 CTCCGCATCT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 37 0.79
48 10 0.21
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (48 bp):
TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
Found at i:22015860 original size:2 final size:2
Alignment explanation
Indices: 22015853--22015879 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22015843 TTGTTTTAAT
22015853 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22015880 TATGAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22016478 original size:21 final size:20
Alignment explanation
Indices: 22016454--22016519 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
22016444 AAATTAACTT
22016454 AAATATAAAATAAAGTAAACA
1 AAATATAAAATAAAG-AAACA
* *
22016475 AAATA-AAAAGGAACGAAAACA
1 AAATATAAAA-TAAAG-AAACA
22016496 TAAA-AT-AAATAAAGAAACA
1 -AAATATAAAATAAAGAAACA
22016515 AAATA
1 AAATA
22016520 AAAGAAACAG
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
18 3 0.08
19 6 0.17
20 7 0.19
21 17 0.47
22 3 0.08
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.14
Consensus pattern (20 bp):
AAATATAAAATAAAGAAACA
Found at i:22017456 original size:13 final size:14
Alignment explanation
Indices: 22017433--22017462 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22017423 TTTGAGAAGA
22017433 GATTTGGAGATG-T
1 GATTTGGAGATGCT
22017446 GATTTGGAGATGCT
1 GATTTGGAGATGCT
22017460 GAT
1 GAT
22017463 GTTTATATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.23, C:0.03, G:0.37, T:0.37
Consensus pattern (14 bp):
GATTTGGAGATGCT
Found at i:22017542 original size:29 final size:29
Alignment explanation
Indices: 22017502--22017605 Score: 123
Period size: 28 Copynumber: 3.8 Consensus size: 29
22017492 GCATTCTGTG
*
22017502 TTATTCTGGTGTGTTTTGGATGGATTATA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
*
22017531 TTATTCTGGTGTGTTTGGGA-GGATTACA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
* *
22017559 TTATACTGGTGTGTTTTGGTTGG---ACA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
22017585 -T-TTCTGGTGTG-TTTGGATGGA
1 TTATTCTGGTGTGTTTTGGATGGA
22017606 ATCCATGTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
23 8 0.12
24 9 0.14
25 1 0.02
26 3 0.05
28 24 0.36
29 21 0.32
ACGTcount: A:0.15, C:0.06, G:0.32, T:0.47
Consensus pattern (29 bp):
TTATTCTGGTGTGTTTTGGATGGATTACA
Found at i:22019418 original size:29 final size:29
Alignment explanation
Indices: 22019366--22019430 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
22019356 ATTTGAGGGG
**
22019366 ATTTGGCGATTTTATTGCACTTATTCATT
1 ATTTGGCGATTTTATCACACTTATTCATT
* * *
22019395 ATTTGGCGGTTTTATCACATTTATTCGTT
1 ATTTGGCGATTTTATCACACTTATTCATT
*
22019424 TTTTGGC
1 ATTTGGC
22019431 ATAATTTCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (29 bp):
ATTTGGCGATTTTATCACACTTATTCATT
Found at i:22029148 original size:19 final size:19
Alignment explanation
Indices: 22029103--22029140 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
22029093 CATGGGAAAT
*
22029103 CAACATGGCCTAGACTTCC
1 CAACACGGCCTAGACTTCC
*
22029122 CAACACGGCCTGGACTTCC
1 CAACACGGCCTAGACTTCC
22029141 TCACACGGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.18
Consensus pattern (19 bp):
CAACACGGCCTAGACTTCC
Found at i:22042603 original size:29 final size:26
Alignment explanation
Indices: 22042563--22042634 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
22042553 TTATTTTCAC
22042563 TTTTATCTTTATTTATCTTCTTTAAGTATT-
1 TTTTAT-TTTATTT-TC--CTTTAA-TATTA
22042593 TTTTATTTTATTTTCCTTTAATATTA
1 TTTTATTTTATTTTCCTTTAATATTA
22042619 TTTTAATTTTAGTTTT
1 TTTT-ATTTTA-TTTT
22042635 TATAATTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
25 4 0.10
26 10 0.26
27 6 0.15
28 6 0.15
29 7 0.18
30 6 0.15
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTTATTTTATTTTCCTTTAATATTA
Found at i:22069321 original size:37 final size:37
Alignment explanation
Indices: 22069271--22069345 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
22069261 ATTCAGAGAT
*
22069271 GTTCATCGTGTTCATCTTCAGTCCTCTAATACACTAG
1 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
22069308 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
1 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
22069345 G
1 G
22069346 ATGTTATCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (37 bp):
GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
Found at i:22075725 original size:22 final size:21
Alignment explanation
Indices: 22075676--22075730 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
22075666 TTCATCGAAC
*
22075676 ATCTATTTATTTTATTTTATT
1 ATCTATTTATTTTATTTTATA
*
22075697 TTACTATTTATTATTATTTTATA
1 AT-CTATTTATT-TTATTTTATA
22075720 ATCTATTTATT
1 ATCTATTTATT
22075731 CATTCATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 18 0.62
23 10 0.34
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
ATCTATTTATTTTATTTTATA
Found at i:22075775 original size:63 final size:63
Alignment explanation
Indices: 22075702--22075831 Score: 172
Period size: 63 Copynumber: 2.1 Consensus size: 63
22075692 TTATTTTACT
*
22075702 ATTTATTATTATTT-TATAATCTATTTATTCATTCATTCATTCTTTTACTTTTTAAATACTTAA
1 ATTTAATATTATTTGTATAATCTATTTATTCATTCATT-ATTCTTTTACTTTTTAAATACTTAA
* * * * * * *
22075765 ATTTAATATTATTTGTTTCATCTATTTATTTATTTATTATTCTTTTATTTTTTTAATATTTAA
1 ATTTAATATTATTTGTATAATCTATTTATTCATTCATTATTCTTTTACTTTTTAAATACTTAA
22075828 ATTT
1 ATTT
22075832 GATACTAGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 39 0.67
64 19 0.33
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (63 bp):
ATTTAATATTATTTGTATAATCTATTTATTCATTCATTATTCTTTTACTTTTTAAATACTTAA
Found at i:22080384 original size:12 final size:12
Alignment explanation
Indices: 22080367--22080391 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22080357 ACCAATACCG
22080367 ATTGAATCAACC
1 ATTGAATCAACC
22080379 ATTGAATCAACC
1 ATTGAATCAACC
22080391 A
1 A
22080392 AGTCGGTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (12 bp):
ATTGAATCAACC
Found at i:22085824 original size:23 final size:23
Alignment explanation
Indices: 22085798--22085844 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22085788 CATTCTATTG
*
22085798 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
22085821 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
22085844 T
1 T
22085845 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:22087157 original size:6 final size:6
Alignment explanation
Indices: 22087148--22087184 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
22087138 GATGATGATG
22087148 TTTAAT TTT-AT TTTAAT TTTAAT TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
22087185 ATGTTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTAAT
Found at i:22087164 original size:11 final size:11
Alignment explanation
Indices: 22087148--22087185 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
22087138 GATGATGATG
22087148 TTTAATTTTAT
1 TTTAATTTTAT
22087159 TTTAATTTTAAT
1 TTTAATTTT-AT
*
22087171 TTTAATTTTAA
1 TTTAATTTTAT
22087182 TTTA
1 TTTA
22087186 TGTTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTAATTTTAT
Found at i:22088676 original size:19 final size:19
Alignment explanation
Indices: 22088652--22088693 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
22088642 GTGATTTGAA
22088652 TGAATCTTTAGTAAGGATG
1 TGAATCTTTAGTAAGGATG
22088671 TGAATCTTTAGTAAGGATG
1 TGAATCTTTAGTAAGGATG
22088690 TGAA
1 TGAA
22088694 ACTCTGTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (19 bp):
TGAATCTTTAGTAAGGATG
Found at i:22089163 original size:123 final size:123
Alignment explanation
Indices: 22088941--22089187 Score: 354
Period size: 123 Copynumber: 2.0 Consensus size: 123
22088931 TGGGGATATT
* * * * *
22088941 TGATAAACCGTAATTTATACATATTTTTTCCCATGCTTAGCACATTTTATGAATGAATTTTCCTT
1 TGATAAAACGTAATTTATACATATTTTTCCCCATACTTAACACATTTTATGAATGAATTTTCATT
* * *
22089006 GAAATTGGTGAATTCGATGCTCCTAATGCCTTAATTTCATGTTTTATACTTAGGTGAG
66 GAAATTGGCGAATTCAATGCTCCTAATGCCTTAATTTCATGTTTTATACTTAGGAGAG
* * *
22089064 TGATAAAACGTAATTTATACATATTTTTACCCCATATTTAACGCATTTTATGGATG-ATTTTCAT
1 TGATAAAACGTAATTTATACATATTTTT-CCCCATACTTAACACATTTTATGAATGAATTTTCAT
*
22089128 T-AGAATTGGCGAATTCAATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGGAGAG
65 TGA-AATTGGCGAATTCAATGCTCCTAATGCCTTAATTTCATGTTTTATACTTAGGAGAG
22089187 T
1 T
22089188 ATAGGAGAGC
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
122 1 0.01
123 88 0.80
124 21 0.19
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (123 bp):
TGATAAAACGTAATTTATACATATTTTTCCCCATACTTAACACATTTTATGAATGAATTTTCATT
GAAATTGGCGAATTCAATGCTCCTAATGCCTTAATTTCATGTTTTATACTTAGGAGAG
Found at i:22102250 original size:15 final size:15
Alignment explanation
Indices: 22102220--22102270 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
22102210 CATGAAAACT
*
22102220 AAGATAAAGAAGTCC
1 AAGATAAAGAAATCC
* *
22102235 AGGATAATGAAATCC
1 AAGATAAAGAAATCC
*
22102250 ATGATAAAGAAATCC
1 AAGATAAAGAAATCC
22102265 AAGATA
1 AAGATA
22102271 CAATATCACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (15 bp):
AAGATAAAGAAATCC
Found at i:22105495 original size:39 final size:39
Alignment explanation
Indices: 22105441--22105603 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
22105431 TGTGTATGAA
*
22105441 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
22105480 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
22105519 GGTGCGAGCTATGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
22105558 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
22105598 TGTGCG
1 TGTGCG
22105604 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:22105619 original size:40 final size:39
Alignment explanation
Indices: 22105441--22105633 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
22105431 TGTGTATGAA
* *
22105441 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
22105480 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
22105519 GGTGCGAGCTATGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
22105558 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
22105598 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
22105634 TGTTTGAACG
Statistics
Matches: 135, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.70
40 40 0.30
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:22125128 original size:45 final size:45
Alignment explanation
Indices: 22125012--22126017 Score: 475
Period size: 45 Copynumber: 21.6 Consensus size: 45
22125002 AATTAAAAAT
* *
22125012 AAATCTTATCGCCCTGAATTTGCAGTGGAGCAGATTGAAAATAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * *
22125057 AAA-CCTATCTTCCTGAAGTTGTAGTGGAGCAGATTGAAAATAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * *
22125101 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * * * *
22125146 GAATCTTATTTCCCTTAAGTTACAGTGGAACAAATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAATAAC
* * ***
22125197 AAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTG-AAGCCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * **
22125241 AAATCTTACCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * **
22125286 GAATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTTAAAATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * *
22125331 GAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA---A--A-TAAC
* * * * * *
22125382 AAATCTTCTCTCTCTGAAGTTGTAGTAGAGCAAATT-AAAGATACC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAAC
* * * * * *
22125427 TAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATT-AAAGCTACAAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA---ATAA-C
* * * *
22125475 TACTAATCTTATCTCCCTGAAGCTGCAGTGGAGCATATTGAAGATAGC
1 -A--AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * * * * *
22125523 AAACCTTATCTCCTTGGATTTGGAGTGGAGAAAATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * **
22125568 AAATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCT-AC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * *
22125611 GAATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTG-AAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * *
22125655 AAATCTTATCTCCCTAAAGTTGTAGTGGAGAAGATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * ** * *
22125700 GAATCTTATGTCCCTGAAATTGCAGTGGAATAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAATAAC
* * * ** * *
22125751 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA----AA-TAAC
* * * *
22125801 AAATCTTATCTTCCTGAAGTTGTAGTGGAGCAAATTGAAGATAGA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-AC
* * * * * * *
22125846 AAATCTTATTTCTCTGAAATTGCAATGGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAATAAC
* * * * * * * *
22125897 AAATCTTATTTCCCTAAAATTGTAGTGGAACAGAATAAGGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-AT--TG--A-AAATAAC
* * *
22125948 AAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTGAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
*
22125992 AATTCTTATAC-CCCTGAAGTTGCAGT
1 AAATCTTAT-CTCCCTGAAGTTGCAGT
22126018 AGGTTAGAAC
Statistics
Matches: 739, Mismatches: 175, Indels: 95
0.73 0.17 0.09
Matches are distributed among these distances:
43 33 0.04
44 145 0.20
45 297 0.40
46 5 0.01
47 4 0.01
48 8 0.01
49 3 0.00
50 43 0.06
51 197 0.27
52 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (45 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
Found at i:22125208 original size:96 final size:96
Alignment explanation
Indices: 22125012--22126017 Score: 611
Period size: 96 Copynumber: 10.7 Consensus size: 96
22125002 AATTAAAAAT
* * * * * * * *
22125012 AAATCTTATCGCCCTGAATTTGCAGTGGAGCAGATTGAAAATAAC-AAACCTATCTTCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * * *
22125076 TGTAGTGGAGCAGATT---G--A-AAATAAC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * *
22125101 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTTAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* *
22125166 TACAGTGGAACAAATTAAAGCTACAAGTTAC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * ** * *
22125197 AAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCA-CAAATCTTACCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * * *
22125261 TGCAGTAGAGCAGATTGAAG--A-TAG-T--
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * * *
22125286 GAATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTTAAAATAGTGAATCTTATTTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* *
22125351 TACAGTGGAACAGATTAAAGCTACGAGTTAC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * * *
22125382 AAATCTTCTCTCTCTGAAGTTGTAGTAGAGCAAATTAAAGATACCTAATCTTATTTCCCTAAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* *
22125447 TGTAGTGGAACAGATTAAAGCTACAAGCTAC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * *
22125478 TAATCTTATCTCCCTGAAGCTGCAGTGGAGCATATTGAAGATAGCAAACCTTATCTCCTTGGATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* ** *
22125543 TGGAGTGG---AGA--AAA--TTGAAGATAGC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTA-C
* * * * *
22125568 AAATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCTA-CGAATCTTATCTCTCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* **
22125631 TGTAGTGGAGTAGATT---G----AAGTTAC
66 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * *
22125655 AAATCTTATCTCCCTAAAGTTGTAGTGGAG-AAGATTGAAGATAGCGAATCTTATGTCCCTGAAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAA-ATTGAAGATAGCGAATCTTATCTCCCTGAAG
*
22125719 TTGCAGTGGAATAGATTAAAGCTACAAGTTAC
65 TTGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * *
22125751 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCTGAAGTTA-CAAATCTTATCTTCC
1 AAATCTTATCTCCCTGAAGTTGCAGTGG---AG--CAAA-TTGAAGATAGCGAATCTTATCTCCC
* * * * *
22125815 TGAAGTTGTAGTGGAGCAAATTGAAG--A-TAG--A-
60 TGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * * * * *
22125846 AAATCTTATTTCTCTGAAATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAG--A-TAG---CGAATCTTATCTCCC
* * * * *
22125911 TAAAATTGTAGTGGAACAGAATAAGGCTACAAGTTAC
60 TGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTAC
* *
22125948 AAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-GAC-AATTCTTATAC-CCCTGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAG-CGAA-TCTTAT-CTCCCTGA
22126009 AGTTGCAGT
63 AGTTGCAGT
22126018 AGGTTAGAAC
Statistics
Matches: 702, Mismatches: 162, Indels: 100
0.73 0.17 0.10
Matches are distributed among these distances:
86 1 0.00
87 30 0.04
88 32 0.05
89 122 0.17
90 93 0.13
91 7 0.01
92 6 0.01
93 7 0.01
94 3 0.00
95 78 0.11
96 237 0.34
97 1 0.00
98 3 0.00
99 5 0.01
101 34 0.05
102 43 0.06
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (96 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCGAATCTTATCTCCCTGAAGT
TGCAGTGGAACAGATTAAAGCTACAAGTTAC
Found at i:22125875 original size:95 final size:96
Alignment explanation
Indices: 22125751--22125925 Score: 264
Period size: 95 Copynumber: 1.8 Consensus size: 96
22125741 TACAAGTTAC
* * *
22125751 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCT-GAAGTTACAAATCTTATCTT-C
1 AAATCTTATTTCCCCGAAATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTAT-TTCC
* *
22125814 CTGAAGTTGTAGTGGAGCAAATTGAAGATAGA
65 CTAAAATTGTAGTGGAGCAAATTGAAGATAGA
* *
22125846 AAATCTTATTTCTCTGAAATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
1 AAATCTTATTTCCCCGAAATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
22125911 TAAAATTGTAGTGGA
66 TAAAATTGTAGTGGA
22125926 ACAGAATAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
95 40 0.56
96 31 0.44
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (96 bp):
AAATCTTATTTCCCCGAAATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
TAAAATTGTAGTGGAGCAAATTGAAGATAGA
Found at i:22126035 original size:146 final size:145
Alignment explanation
Indices: 22125099--22126017 Score: 564
Period size: 146 Copynumber: 6.5 Consensus size: 145
22125089 ATTGAAAATA
* * * * * *
22125099 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGAT-AGCGAATCTTATTTCCCTTA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGA-C-AATCTTATATCCCTGA
* * * * * ** * * **
22125163 AGTTACAGTGGAACAAATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGT
64 AATTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* *
22125228 AGATTGAAGC-C-----
129 AGAATAAAGCTCAAGTT
* * * ** * *
22125239 ACAAATCTTACCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGTGAATCTTATCTCCTTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAT-GACAATCTTATATCCCTGAA
* * * * * ** * *
22125304 GTTACAGTGGAGTAGATTTAAA---A-TAG-T--GAATCTTATTTCCCTGAAGTTACAGTGGAAC
65 ATTGCAGTGGAATAGA-TTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* *
22125362 AGATTAAAGCTACGAGTT
129 AGAATAAAGCT-CAAGTT
* * * * * *
22125380 ACAAATCTTCTCTCTCTGAAGTTGTAGTAGAGCAAATTAAAGAT-ACCTAATCTTATTTCCCT-A
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGA-C-AATCTTATATCCCTGA
* * * * * ** ** *
22125443 AAGTTGTAGTGGAACAGATTAAAGCTACAAGCTACTAATCTTATCTCCCTGAAGCTGCAGTGGAG
64 AA-TTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAA
* * * *
22125508 CATATTGAAGAT--AG--
128 CAGAATAAAGCTCAAGTT
* * * * * * * *
22125522 -CAAACCTTATCTCCTTGGATTTGGAGTGGAGAAAATTGAAGAT-AGCAAATCTTATTTCCCTGA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGA-C-AATCTTATATCCCTGA
** * * ** * *
22125585 AATTGCAGTGGAGCAGATT-AAGCTAC--G-----AATCTTATCTCTCTGAAGTTGTAGTGG---
64 AATTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* * *
22125639 AG--TAGA-TTGAAGTT
129 AGAATAAAGCTCAAGTT
* * *
22125653 ACAAATCTTATCTCCCTAAAGTTGTAGTGGAGAAGATTGAAGAT-AGCGAATCTTATGTCCCTGA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGA-C-AATCTTATATCCCTGA
* *
22125717 AATTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCGAAATTGCAGTGGAAT
64 AATTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* *
22125782 AGATTAAAGCTGAAGTT
129 AGAATAAAGCTCAAGTT
* * * * *
22125799 ACAAATCTTATCTTCCTGAAGTTGTAGTGGAGCAAATTGAAGATAGAAAATCTTATTTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAT-GACAATCTTATATCCCTGAA
* * * *
22125864 ATTGCAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCTAAAATTGTAGTGGAACA
65 ATTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACA
*
22125929 GAATAAGGCTACAAGTT
130 GAATAAAGCT-CAAGTT
* * *
22125946 ACAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGACAATTCTTATACCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGACAA-TCTTATATCCCTGAA
*
22126010 GTTGCAGT
65 ATTGCAGT
22126018 AGGTTAGAAC
Statistics
Matches: 627, Mismatches: 108, Indels: 82
0.77 0.13 0.10
Matches are distributed among these distances:
127 1 0.00
128 2 0.00
129 2 0.00
130 1 0.00
132 71 0.11
133 31 0.05
134 36 0.06
135 1 0.00
136 2 0.00
137 2 0.00
138 2 0.00
140 102 0.16
141 130 0.21
142 3 0.00
143 3 0.00
144 4 0.01
145 8 0.01
146 148 0.24
147 77 0.12
148 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (145 bp):
ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATGACAATCTTATATCCCTGAAA
TTGCAGTGGAATAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACAG
AATAAAGCTCAAGTT
Found at i:22126664 original size:21 final size:21
Alignment explanation
Indices: 22126604--22126646 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22126594 AAAAGAAAGG
22126604 TGATTTTTTTTATATTTTCAT
1 TGATTTTTTTTATATTTTCAT
22126625 TGATTTTTTTTATATTTTCAT
1 TGATTTTTTTTATATTTTCAT
22126646 T
1 T
22126647 CTTTATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (21 bp):
TGATTTTTTTTATATTTTCAT
Found at i:22127522 original size:15 final size:15
Alignment explanation
Indices: 22127487--22127519 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
22127477 TGTTAATTCT
22127487 TTTATTTTTTATTTA
1 TTTATTTTTTATTTA
22127502 TTTATTTTCTTATTTA
1 TTTATTTT-TTATTTA
22127518 TT
1 TT
22127520 ATTCCTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTTTTTATTTA
Found at i:22127528 original size:23 final size:24
Alignment explanation
Indices: 22127488--22127533 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
22127478 GTTAATTCTT
* *
22127488 TTATTTTTTATTTATTTA-TTTTC
1 TTATTTATTATTCATTTACTTTTC
*
22127511 TTATTTATTATTCCTTTACTTTT
1 TTATTTATTATTCATTTACTTTT
22127534 TGTTATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (24 bp):
TTATTTATTATTCATTTACTTTTC
Found at i:22127604 original size:21 final size:22
Alignment explanation
Indices: 22127580--22127634 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
22127570 CGAACATCTA
*
22127580 TTATTTATTTTATT-TTAGTAT
1 TTATTTATTTTATTAGTAGTAT
*
22127601 TTATTACTATTTTATTAGTATTAT
1 TTATT--TATTTTATTAGTAGTAT
*
22127625 CTATTTATTT
1 TTATTTATTT
22127635 ATTCATTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 5 0.18
22 5 0.18
23 9 0.32
24 9 0.32
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTTATTTTATTAGTAGTAT
Found at i:22127676 original size:60 final size:59
Alignment explanation
Indices: 22127612--22127725 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
22127602 TATTACTATT
22127612 TTATTAGTATT-ATCTATTTATTTATTCATTCTTTTACTTTTTAAATACTTAAATTTAATA
1 TTATTAGT-TTCATCTATTTATTTATT-ATTCTTTTACTTTTTAAATACTTAAATTTAATA
* * * *
22127672 TTATTTGTTTCATCTATTTATTTATTATTCTTTTATTTTTTTAATATTTAAATT
1 TTATTAGTTTCATCTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATT
22127726 GGATACTACT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 27 0.55
60 22 0.45
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (59 bp):
TTATTAGTTTCATCTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATA
Found at i:22128445 original size:27 final size:27
Alignment explanation
Indices: 22128403--22128455 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
22128393 AACTAGGTAC
*
22128403 CTATTTTGGGCGTTACGAGGGTGCTAT
1 CTATTTTGGGCATTACGAGGGTGCTAT
22128430 CTATTTTGGGCATTACGAGGGTGCTA
1 CTATTTTGGGCATTACGAGGGTGCTA
22128456 ACCTTTCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.32, T:0.36
Consensus pattern (27 bp):
CTATTTTGGGCATTACGAGGGTGCTAT
Found at i:22129380 original size:35 final size:35
Alignment explanation
Indices: 22129334--22129404 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
22129324 CACTTGCCTC
22129334 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
22129369 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
22129404 T
1 T
22129405 CACACACCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.17, C:0.48, G:0.11, T:0.24
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:22129821 original size:16 final size:16
Alignment explanation
Indices: 22129802--22129872 Score: 82
Period size: 13 Copynumber: 4.8 Consensus size: 16
22129792 AAAGAGGGGA
*
22129802 AGCAAAAAAAAAATCC
1 AGCAAAAAAAAATTCC
22129818 AGC---AAAAAATTCC
1 AGCAAAAAAAAATTCC
22129831 AGCAAAAAAAAATTTCC
1 AGCAAAAAAAAA-TTCC
22129848 AG---AAAAAAATTCC
1 AGCAAAAAAAAATTCC
22129861 AGCAAAAAAAAA
1 AGCAAAAAAAAA
22129873 CCAAAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
13 18 0.38
14 7 0.15
16 16 0.34
17 6 0.13
ACGTcount: A:0.65, C:0.17, G:0.07, T:0.11
Consensus pattern (16 bp):
AGCAAAAAAAAATTCC
Found at i:22129841 original size:30 final size:30
Alignment explanation
Indices: 22129805--22129872 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
22129795 GAGGGGAAGC
*
22129805 AAAAAAAAAATCCAGCAAAAAATTCCAGCA
1 AAAAAAAAAATCCAGAAAAAAATTCCAGCA
**
22129835 AAAAAAAATTTCCAGAAAAAAATTCCAGCA
1 AAAAAAAAAATCCAGAAAAAAATTCCAGCA
22129865 AAAAAAAA
1 AAAAAAAA
22129873 CCAAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.66, C:0.16, G:0.06, T:0.12
Consensus pattern (30 bp):
AAAAAAAAAATCCAGAAAAAAATTCCAGCA
Found at i:22130160 original size:11 final size:11
Alignment explanation
Indices: 22130146--22130184 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
22130136 CCCTTCCCCT
22130146 TCCCTTCTCTC
1 TCCCTTCTCTC
22130157 TCCCTTCTCTC
1 TCCCTTCTCTC
22130168 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
22130179 TTCCTT
1 TCCCTT
22130185 TTTTTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 3 0.12
11 18 0.72
12 4 0.16
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:22130160 original size:22 final size:22
Alignment explanation
Indices: 22130135--22130184 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
22130125 CGACCGGATT
22130135 TCCCTTC-CCCTTCCCTTCTCTC
1 TCCCTTCTCCCTTCCC-TCTCTC
*
22130157 TCCCTTCTCTCTTCCCTCTCTC
1 TCCCTTCTCCCTTCCCTCTCTC
*
22130179 TTCCTT
1 TCCCTT
22130185 TTTTTTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (22 bp):
TCCCTTCTCCCTTCCCTCTCTC
Found at i:22130163 original size:16 final size:17
Alignment explanation
Indices: 22130142--22130183 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
22130132 ATTTCCCTTC
*
22130142 CCCTTCC-CTTCTCTCT
1 CCCTTCCTCTTCCCTCT
22130158 CCCTTCTCTCTTCCCTCT
1 CCCTTC-CTCTTCCCTCT
*
22130176 CTCTTCCT
1 CCCTTCCT
22130184 TTTTTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 3 0.14
18 13 0.59
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (17 bp):
CCCTTCCTCTTCCCTCT
Found at i:22130713 original size:2 final size:2
Alignment explanation
Indices: 22130701--22130851 Score: 102
Period size: 2 Copynumber: 78.0 Consensus size: 2
22130691 ATCATTTCTA
* * *
22130701 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* ** * *
22130742 AT AT AT AT AT -T AT GT AT AT AT GCC AT -T AGT -T AT AT AT TT CT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT A-T AT AT AT AT AT AT
* * * *
22130783 -T AT GT AT AT AT -T CT -T AA AT ACT AT -T AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
*
22130822 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22130852 TTTAAATTCC
Statistics
Matches: 118, Mismatches: 20, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
1 8 0.07
2 107 0.91
3 3 0.03
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22130957 original size:2 final size:2
Alignment explanation
Indices: 22130940--22130976 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
22130930 GTGTATATTT
* *
22130940 TA TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22130977 TTTTGCACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:22143119 original size:70 final size:70
Alignment explanation
Indices: 22143032--22143608 Score: 906
Period size: 70 Copynumber: 8.2 Consensus size: 70
22143022 CAAGTGACAG
*
22143032 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143097 GTTTC
66 GTTTC
22143102 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143167 GTTTC
66 GTTTC
22143172 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-ACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143236 GTTTC
66 GTTTC
22143241 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTTCA
22143306 ATTTATGTTTC
60 ATTTATGTTTC
22143317 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143382 GTTTC
66 GTTTC
22143387 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-ACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143451 GTTTC
66 GTTTC
*
22143456 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA--T--
22143521 ATTATGTTTC
62 -TTATGTTTC
* * *
22143531 AAAAATCAACTCATA-T-----AGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTGT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-T
22143589 -T-TTTC
64 ATGTTTC
22143594 AAAAATCAACTCATA
1 -AAAATCAACTCATA
22143609 GGTGAGTTGA
Statistics
Matches: 486, Mismatches: 6, Indels: 37
0.92 0.01 0.07
Matches are distributed among these distances:
63 19 0.04
64 2 0.00
65 1 0.00
67 1 0.00
69 156 0.32
70 212 0.44
71 1 0.00
72 1 0.00
75 10 0.02
76 83 0.17
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:22143283 original size:139 final size:140
Alignment explanation
Indices: 22143032--22143608 Score: 906
Period size: 139 Copynumber: 4.1 Consensus size: 140
22143022 CAAGTGACAG
*
22143032 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143097 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
22143162 TTTATGTTTC
131 TTTATGTTTC
22143172 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-ACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143236 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA
22143301 TTTCAATTTATGTTTC
125 TTTCAATTTATGTTTC
22143317 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
22143382 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-ACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
22143446 TTTATGTTTC
131 TTTATGTTTC
*
22143456 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA--T--
* * *
22143521 ATTATGTTTCAAAAATCAACTCATA-T-----AGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAA
62 -TTATGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
22143579 TTTCAATTGT-T-TTTC
125 TTTCAATT-TATGTTTC
22143594 AAAAATCAACTCATA
1 -AAAATCAACTCATA
22143609 GGTGAGTTGA
Statistics
Matches: 416, Mismatches: 5, Indels: 33
0.92 0.01 0.07
Matches are distributed among these distances:
138 4 0.01
139 209 0.50
140 40 0.10
141 1 0.00
144 11 0.03
145 82 0.20
146 69 0.17
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (140 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATGTTTC
Found at i:22143397 original size:215 final size:215
Alignment explanation
Indices: 22143032--22143608 Score: 970
Period size: 215 Copynumber: 2.7 Consensus size: 215
22143022 CAAGTGACAG
*
22143032 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
22143091 ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
66 ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
22143156 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAACACGTTGAG
131 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAACACGTTGAG
22143221 GTAATTTCAATTTATGTTTC
196 GTAATTTCAATTTATGTTTC
22143241 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
22143306 ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
66 ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
22143371 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAACACGTTGAG
131 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAACACGTTGAG
22143436 GTAATTTCAATTTATGTTTC
196 GTAATTTCAATTTATGTTTC
*
22143456 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
* * *
22143521 A-TTATGTTTCAAAAATCAACTCATA-T-----AGGTGAGTTGAGCCTC-GGGCACGCTGAGGTA
66 ATTTATGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
22143578 ATTTCAATTGT-T-TTTCAAAAATCAACTCATA
130 ATTTCAATT-TATGTTTC-AAAATCAACTCATA
22143609 GGTGAGTTGA
Statistics
Matches: 354, Mismatches: 5, Indels: 19
0.94 0.01 0.05
Matches are distributed among these distances:
207 4 0.01
208 36 0.10
209 67 0.19
214 11 0.03
215 236 0.67
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (215 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCA
ATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAACACGTTGAG
GTAATTTCAATTTATGTTTC
Found at i:22144445 original size:35 final size:35
Alignment explanation
Indices: 22144399--22144503 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
22144389 CACTTGCCTC
22144399 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
22144434 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
22144469 CTCCCACTCT-CCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
22144503 T
1 T
22144504 CACACACCCC
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
34 23 0.34
35 44 0.66
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:22144923 original size:14 final size:14
Alignment explanation
Indices: 22144906--22144971 Score: 64
Period size: 15 Copynumber: 4.6 Consensus size: 14
22144896 GGAAGCAAAA
22144906 AAAAAAAATCCAGC
1 AAAAAAAATCCAGC
*
22144920 -AAAAAATTCCAGC
1 AAAAAAAATCCAGC
22144933 AAAAAAAAATTTCCAG-
1 -AAAAAAAA--TCCAGC
*
22144949 AAAAAAATTTCCAGC
1 AAAAAAA-ATCCAGC
22144964 AAAAAAAA
1 AAAAAAAA
22144972 AACCAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 12 0.29
14 5 0.12
15 20 0.48
17 5 0.12
ACGTcount: A:0.64, C:0.17, G:0.06, T:0.14
Consensus pattern (14 bp):
AAAAAAAATCCAGC
Found at i:22144925 original size:13 final size:14
Alignment explanation
Indices: 22144906--22144970 Score: 71
Period size: 14 Copynumber: 4.5 Consensus size: 14
22144896 GGAAGCAAAA
*
22144906 AAAAAAAATCCAGC
1 AAAAAAATTCCAGC
22144920 -AAAAAATTCCAGC
1 AAAAAAATTCCAGC
22144933 AAAAAAAAATTTCCAG-
1 --AAAAAAA-TTCCAGC
22144949 AAAAAAATTTCCAGC
1 AAAAAAA-TTCCAGC
22144964 AAAAAAA
1 AAAAAAA
22144971 AAACCAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
13 12 0.27
14 14 0.31
15 7 0.16
16 6 0.13
17 6 0.13
ACGTcount: A:0.63, C:0.17, G:0.06, T:0.14
Consensus pattern (14 bp):
AAAAAAATTCCAGC
Found at i:22144934 original size:31 final size:32
Alignment explanation
Indices: 22144899--22144973 Score: 109
Period size: 30 Copynumber: 2.4 Consensus size: 32
22144889 AAAGAGGGGA
*
22144899 AGCAAAAAAAAAAAATCCAGCAAAAAA-TTCC
1 AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
**
22144930 AGC-AAAAAAAAATTTCCAGAAAAAAATTTCC
1 AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
22144961 AGCAAAAAAAAAA
1 AGCAAAAAAAAAA
22144974 CCAAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 20 0.51
31 10 0.26
32 9 0.23
ACGTcount: A:0.65, C:0.16, G:0.07, T:0.12
Consensus pattern (32 bp):
AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
Found at i:22144986 original size:31 final size:29
Alignment explanation
Indices: 22144905--22144984 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 29
22144895 GGGAAGCAAA
**
22144905 AAAAAAAAAT-CCAGCAAAAAATTCCAGC
1 AAAAAAAAATACCAAAAAAAAATTCCAGC
* *
22144933 AAAAAAAAATTTCCAGAAAAAAATTTCCAGC
1 AAAAAAAAA-TACCA-AAAAAAAATTCCAGC
22144964 AAAAAAAAA-ACCAAAAAAAAA
1 AAAAAAAAATACCAAAAAAAAA
22144985 AAATAGAACG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 16 0.36
29 4 0.09
30 3 0.07
31 21 0.48
ACGTcount: A:0.68, C:0.16, G:0.05, T:0.11
Consensus pattern (29 bp):
AAAAAAAAATACCAAAAAAAAATTCCAGC
Found at i:22145787 original size:2 final size:2
Alignment explanation
Indices: 22145775--22145823 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
22145765 ATCATTTCTA
* *
22145775 AT AT GT AT AT AT AT AT AT AT AT GT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22145816 AT AT AT AT
1 AT AT AT AT
22145824 TATGAAGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:22146193 original size:19 final size:19
Alignment explanation
Indices: 22146109--22146195 Score: 63
Period size: 21 Copynumber: 4.3 Consensus size: 19
22146099 CAATATTTTC
*
22146109 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
22146129 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
*
22146148 TTATATATATACATA-TATTGTA
1 TT-T-TATGTACATATTA-T-TA
22146170 TTTTTATGTACATATTATTA
1 -TTTTATGTACATATTATTA
22146190 TTTTAT
1 TTTTAT
22146196 ATTATTACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 19
0.73 0.03 0.25
Matches are distributed among these distances:
19 19 0.34
20 10 0.18
21 20 0.36
22 5 0.09
23 2 0.04
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:22147403 original size:24 final size:26
Alignment explanation
Indices: 22147311--22147415 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
22147301 TGATACAAAT
22147311 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22147337 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22147363 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
22147388 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
22147412 TGAT
1 TGAT
22147416 GGAATTTCAT
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
24 21 0.27
25 9 0.11
26 49 0.62
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:22149030 original size:27 final size:27
Alignment explanation
Indices: 22148990--22149128 Score: 153
Period size: 27 Copynumber: 5.2 Consensus size: 27
22148980 AGGAAGCGTC
* *
22148990 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
22149017 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
** *
22149043 CCTAATGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
22149071 CTGGTGGCTCTGCCAC-ATAATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
22149097 CTGGTGG-TCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
22149123 CTGGTG
1 CTGGTG
22149129 ACTTCGTCAC
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
25 13 0.14
26 26 0.28
27 52 0.55
28 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:22149073 original size:54 final size:53
Alignment explanation
Indices: 22148994--22149128 Score: 193
Period size: 54 Copynumber: 2.5 Consensus size: 53
22148984 AGCGTCCTGG
*
22148994 TGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTAA
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATA-ATCTGTCCTAA
* **
22149048 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAATCTGTCCTAA
*
22149101 TGG-TCTGCCACAA-TATCTGTATCTGGTG
1 TGGCTATGCCACAATTATCTG-ATCTGGTG
22149129 ACTTCGTCAC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
51 6 0.08
52 17 0.23
53 11 0.15
54 41 0.55
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (53 bp):
TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAATCTGTCCTAA
Found at i:22155294 original size:25 final size:26
Alignment explanation
Indices: 22155200--22155306 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
22155190 TGATACAAAT
22155200 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
22155226 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22155252 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22155278 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22155303 TGAT
1 TGAT
22155307 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 22 0.28
26 57 0.72
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:22156493 original size:8 final size:8
Alignment explanation
Indices: 22156480--22156509 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
22156470 AGATCGTCAC
22156480 AAGCCGAA
1 AAGCCGAA
22156488 AAGCCGAA
1 AAGCCGAA
*
22156496 ATGCCGAA
1 AAGCCGAA
22156504 AAGCCG
1 AAGCCG
22156510 GTTTTTGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:22156972 original size:27 final size:26
Alignment explanation
Indices: 22156896--22157025 Score: 162
Period size: 27 Copynumber: 5.0 Consensus size: 26
22156886 AGGAAGCGTC
*
22156896 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTG-T
22156923 CTGGTGGCTCTG-CAC-ATATATCTGT
1 CTGGTGGCTCTGCCACAAT-TATCTGT
*
22156948 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTG-T
22156976 CTGGTGGCTCTGCCAC-A-TATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTG-T
22157001 CTGGTGGCTCTGCCACAA-TATCTGT
1 CTGGTGGCTCTGCCACAATTATCTGT
22157026 ATATGGTGAC
Statistics
Matches: 93, Mismatches: 4, Indels: 14
0.84 0.04 0.13
Matches are distributed among these distances:
25 27 0.29
26 28 0.30
27 35 0.38
28 3 0.03
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTATCTGT
Found at i:22157018 original size:52 final size:53
Alignment explanation
Indices: 22156893--22157033 Score: 223
Period size: 53 Copynumber: 2.7 Consensus size: 53
22156883 TGGAGGAAGC
*
22156893 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACACATATCT
22156946 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGC-CACATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACACATATCT
* * *
22156998 GTTCTGGTGGCTCTGCCACAA-TATCTGTATATGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
22157034 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
51 6 0.07
52 34 0.41
53 43 0.52
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACACATATCT
Found at i:22158014 original size:39 final size:39
Alignment explanation
Indices: 22157960--22158039 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
22157950 GGGTGTTACA
* ** *
22157960 TTTCCAGCATGTAGCCTGTGGACCTCAGGTCCGGATATG
1 TTTCCAGCACGTAGCCTACGGACCTCAAGTCCGGATATG
22157999 TTTCCAGCACGTAGCCTACGGACCTCAAGTCCGGATATG
1 TTTCCAGCACGTAGCCTACGGACCTCAAGTCCGGATATG
22158038 TT
1 TT
22158040 CCAAATATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.28
Consensus pattern (39 bp):
TTTCCAGCACGTAGCCTACGGACCTCAAGTCCGGATATG
Found at i:22164552 original size:5 final size:5
Alignment explanation
Indices: 22164537--22164567 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22164527 TAATAATTAA
*
22164537 TTTAT TATAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
22164568 GGAAGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:22166411 original size:18 final size:18
Alignment explanation
Indices: 22166388--22166423 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22166378 TGAGAATTTC
*
22166388 TGATACCGTGACTGAATG
1 TGATACCGTGACTAAATG
*
22166406 TGATACTGTGACTAAATG
1 TGATACCGTGACTAAATG
22166424 CGTTACTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (18 bp):
TGATACCGTGACTAAATG
Done.