Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 85 of 378
Found at i:23127485 original size:7 final size:7
Alignment explanation
Indices: 23127421--23127486 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
23127411 TAAAACTGCC
23127421 TTTGAGG
1 TTTGAGG
*
23127428 TTTGGGG
1 TTTGAGG
23127435 TTT--GG
1 TTTGAGG
23127440 TTTCGAGG
1 TTT-GAGG
**
23127448 TTTGAAA
1 TTTGAGG
23127455 TTTGA-G
1 TTTGAGG
23127461 TTT-AGGG
1 TTTGA-GG
*
23127468 TTTAAGG
1 TTTGAGG
23127475 TTTGAGG
1 TTTGAGG
23127482 TTTGA
1 TTTGA
23127487 CTTTCGGGGT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
5 6 0.12
6 3 0.06
7 33 0.69
8 6 0.12
ACGTcount: A:0.17, C:0.02, G:0.36, T:0.45
Consensus pattern (7 bp):
TTTGAGG
Found at i:23129160 original size:13 final size:13
Alignment explanation
Indices: 23129126--23129180 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
23129116 AAAGAAGTGT
23129126 TAATA-ATACTACA
1 TAATATATA-TACA
23129139 TAA-ATATATACA
1 TAATATATATACA
*
23129151 TAATATATATATA
1 TAATATATATACA
*
23129164 TTGAAGATATATACA
1 -T-AATATATATACA
23129179 TA
1 TA
23129181 TTGAATAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
12 8 0.23
13 15 0.43
14 2 0.06
15 10 0.29
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (13 bp):
TAATATATATACA
Found at i:23129173 original size:17 final size:17
Alignment explanation
Indices: 23129153--23129185 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23129143 TATATACATA
*
23129153 ATATATATATATTGAAG
1 ATATATACATATTGAAG
23129170 ATATATACATATTGAA
1 ATATATACATATTGAA
23129186 TAAAGCATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (17 bp):
ATATATACATATTGAAG
Found at i:23129204 original size:3 final size:3
Alignment explanation
Indices: 23129192--23129458 Score: 201
Period size: 3 Copynumber: 88.0 Consensus size: 3
23129182 TGAATAAAGC
23129192 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * *
23129239 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACG ATA ATA TTG A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * *
23129286 ATA CCA A-A AAA AGCTA CT- ATA GTA ATGA A-A AT- ATA AAA ATA A-A
1 ATA ATA ATA ATA A--TA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * * * *
23129329 GTG ATA A-A ACA TTA CTA TATA TATA CACGTA CATA A-A GTA TATA CTA
1 ATA ATA ATA ATA ATA ATA -ATA -ATA -A--TA -ATA ATA ATA -ATA ATA
23129376 ATA CATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
23129422 ATA ATA ATA ATA ATA ATA ATA AGAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
23129459 GCATCAGACA
Statistics
Matches: 213, Mismatches: 33, Indels: 36
0.76 0.12 0.13
Matches are distributed among these distances:
2 14 0.07
3 176 0.83
4 18 0.08
5 1 0.00
6 4 0.02
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:23132257 original size:12 final size:11
Alignment explanation
Indices: 23132213--23132259 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
23132203 GGCCCGGGCT
23132213 AAAACAAACCC
1 AAAACAAACCC
*
23132224 AATACAAACCC
1 AAAACAAACCC
23132235 AAAACAAACCC
1 AAAACAAACCC
*
23132246 AAACCTAAACCC
1 AAAAC-AAACCC
23132258 AA
1 AA
23132260 CTATCAGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
11 24 0.75
12 8 0.25
ACGTcount: A:0.60, C:0.36, G:0.00, T:0.04
Consensus pattern (11 bp):
AAAACAAACCC
Found at i:23132703 original size:2 final size:2
Alignment explanation
Indices: 23132696--23132727 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
23132686 CTCTTTTATT
23132696 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23132728 AAAGATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23133380 original size:3 final size:3
Alignment explanation
Indices: 23133372--23133756 Score: 130
Period size: 3 Copynumber: 128.7 Consensus size: 3
23133362 ATTTTCAAAT
23133372 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
23133420 TCTGA TT- TAAA ATA TTA -TC TTA TTA TTA TT- TTCCA TGA TTA TTA
1 T-T-A TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA
* * * * *
23133464 TTA TTA ATA -TA TTT TTA TTC TTA TTA ATA -CA TTA TTA TTA TCT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * * *
23133507 TT- TCTA CT- TTA TTA CTA TTA TT- GTA TTG TTG CTA ATA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *** * *
23133550 TCA -TA TTA TTA GGC TAA TTA AT- TTA -TA TTA TTA CTTCA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TT-A TTA TTA
* * * * ** *
23133593 TGT- TTCC TT- TTGCA TTCA CTTA -TA TTT TTA CTTA -CA TCA TCG CTA
1 T-TA TT-A TTA TT--A TT-A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA
23133638 TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
23133685 TTA TTA CTA TT- TGTA TTA ATA -TA TTA TTA GTT- TTA TTAA TGTA TTG
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TT-A T-TA TTA
*
23133731 TTA TTT TTA TT- TTA TTTA TTA TTA TT
1 TTA TTA TTA TTA TTA -TTA TTA TTA TT
23133757 GTTTCATCCT
Statistics
Matches: 288, Mismatches: 53, Indels: 82
0.68 0.13 0.19
Matches are distributed among these distances:
2 32 0.11
3 221 0.77
4 26 0.09
5 9 0.03
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:23133487 original size:20 final size:20
Alignment explanation
Indices: 23133372--23133504 Score: 92
Period size: 20 Copynumber: 6.5 Consensus size: 20
23133362 ATTTTCAAAT
*
23133372 TTATTATTATTATT-AT-TA
1 TTATTATTATTATTAATACA
* *
23133390 TTATTATTATTATTATTATTA
1 TTATTATTATTATTAATA-CA
* *
23133411 TTATTATTATCTGATTTAAAATA
1 TTATTATTAT-T-A-TTAATACA
* *
23133434 TTATCTTATTATTATT-TTCCA
1 TTA--TTATTATTATTAATACA
* *
23133455 TGATTATTATTATTAATATA
1 TTATTATTATTATTAATACA
* *
23133475 TTTTTATTCTTATTAATACA
1 TTATTATTATTATTAATACA
23133495 TTATTATTAT
1 TTATTATTAT
23133505 CTTTTCTACT
Statistics
Matches: 89, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
18 14 0.16
19 12 0.13
20 26 0.29
21 15 0.17
22 3 0.03
23 7 0.08
24 5 0.06
25 7 0.08
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATTATTATTATTAATACA
Found at i:23133792 original size:23 final size:22
Alignment explanation
Indices: 23133749--23133793 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
23133739 ATTTTATTTA
*
23133749 TTATTATTGTTTCATCCTTATT
1 TTATTATTGTTTCATCATTATT
* *
23133771 TTATTTTTGTCTTCATTATTATT
1 TTATTATTGT-TTCATCATTATT
23133794 GCATTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.18, C:0.11, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTATTGTTTCATCATTATT
Found at i:23134641 original size:2 final size:2
Alignment explanation
Indices: 23134634--23134665 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
23134624 ATACAAAATA
23134634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23134666 GAGAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23138334 original size:43 final size:43
Alignment explanation
Indices: 23138172--23138324 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
23138162 TAGGTTATCA
* *
23138172 ATATGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTG
1 ATATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
* *
23138215 -TATTGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
1 ATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
* * * * * *
23138258 TTAAT-TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCG
1 AT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
*
23138301 ATATGTGATAACATGTAAGACCAT
1 ATATGTGATTACATGTAAGACCAT
23138325 ATCTAGGATA
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 4 0.04
43 85 0.92
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:23139108 original size:43 final size:43
Alignment explanation
Indices: 23138929--23139086 Score: 253
Period size: 43 Copynumber: 3.7 Consensus size: 43
23138919 GAAAAAAAAT
*
23138929 GCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* *
23138972 GCCGCTAAAGGTCAAAGCTTTTAGCAGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* * * *
23139015 ACCACTAAAGGTCAAGGCTTTTAGCGACGTTTGTGAGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
23139058 GCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCG
23139087 CTTTTTCTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:23145119 original size:9 final size:9
Alignment explanation
Indices: 23145105--23145241 Score: 130
Period size: 9 Copynumber: 14.6 Consensus size: 9
23145095 ATGTATTCGT
23145105 TAAGTTATG
1 TAAGTTATG
23145114 TAAGTTGTTATG
1 TAA---GTTATG
*
23145126 TACGTTATG
1 TAAGTTATG
*
23145135 TGAGTTATG
1 TAAGTTATG
*
23145144 TAAATTATG
1 TAAGTTATG
*
23145153 TAAATTATG
1 TAAGTTATG
23145162 TAAGTTATG
1 TAAGTTATG
*
23145171 TGAGTTATG
1 TAAGTTATG
23145180 TAAGTTGTTATG
1 TAA---GTTATG
*
23145192 TAAATTATG
1 TAAGTTATG
*
23145201 TAAGTTATA
1 TAAGTTATG
*
23145210 TGAGTTATG
1 TAAGTTATG
23145219 TAAGTTATG
1 TAAGTTATG
* *
23145228 TAATTTATT
1 TAAGTTATG
23145237 TAAGT
1 TAAGT
23145242 AATGATCAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
9 88 0.84
12 17 0.16
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:23145181 original size:66 final size:66
Alignment explanation
Indices: 23145107--23145235 Score: 186
Period size: 66 Copynumber: 2.0 Consensus size: 66
23145097 GTATTCGTTA
** * *
23145107 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAATTATGTAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAATTATGTAAGTTATGT
23145172 G
66 G
* * * *
23145173 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAATTTAT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAATTATGTAAGTTAT
23145236 TTAAGTAATG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (66 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAATTATGTAAGTTATGT
G
Found at i:23145191 original size:39 final size:39
Alignment explanation
Indices: 23145121--23145226 Score: 164
Period size: 39 Copynumber: 2.8 Consensus size: 39
23145111 ATGTAAGTTG
*
23145121 TTATGTACGTTATGTGAGTTATGTAA---ATTATGTAAA
1 TTATGTAAGTTATGTGAGTTATGTAAGTTATTATGTAAA
*
23145157 TTATGTAAGTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTATGTGAGTTATGTAAGTTATTATGTAAA
*
23145196 TTATGTAAGTTATATGAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTGAGTTATGTAAGTTAT
23145227 GTAATTTATT
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 25 0.40
39 38 0.60
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (39 bp):
TTATGTAAGTTATGTGAGTTATGTAAGTTATTATGTAAA
Found at i:23145784 original size:241 final size:241
Alignment explanation
Indices: 23145361--23146037 Score: 1194
Period size: 241 Copynumber: 2.8 Consensus size: 241
23145351 TGAATATAGT
23145361 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
23145426 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* * * *
23145491 ATGTTGGAGAGAAAGTCAGCAATTGTTGTAATTTTAATGGTCAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
23145556 ATTCAATAGTAAATGAGCTCGACAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGACAGAACTTTTTTCAAGTCTTTTTG
* * *
23145602 AATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGAGAGGATCCATTATATCTTATAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
23145667 TCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
23145732 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
*
23145797 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGACAGAACTTTTTTCAAGTCTTTTTG
* *
23145843 AATTTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGA
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
23145908 TCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* *
23145973 AGGTTGGAGAGAAGGTCAGCTATATTGTTGTAATTTTATTGGACAAGCAAGCTAAATGGT-ATAA
131 AGGTTGGAGAGAAGGTCAGC--TATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAA
23146037 A
194 A
23146038 ATTAATTCAT
Statistics
Matches: 414, Mismatches: 20, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
241 373 0.90
242 5 0.01
243 36 0.09
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATGAGCTCGACAGAACTTTTTTCAAGTCTTTTTG
Found at i:23148914 original size:11 final size:11
Alignment explanation
Indices: 23148900--23148949 Score: 64
Period size: 11 Copynumber: 4.4 Consensus size: 11
23148890 AATATTTTAA
23148900 AAATTCTTGAC
1 AAATTCTTGAC
* *
23148911 AAATTATTTTGTC
1 AAA-T-TCTTGAC
23148924 AAATTCTTGAC
1 AAATTCTTGAC
23148935 AAATTCTTGAC
1 AAATTCTTGAC
23148946 AAAT
1 AAAT
23148950 ATACAAGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 23 0.70
12 2 0.06
13 8 0.24
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATTCTTGAC
Found at i:23149349 original size:18 final size:19
Alignment explanation
Indices: 23149328--23149363 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23149318 TTTGAAATTC
23149328 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
23149346 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
23149364 CAGAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:23150048 original size:40 final size:39
Alignment explanation
Indices: 23149938--23150048 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 39
23149928 CAATTAAACA
** *
23149938 TTTAGTGGCGTTTTACAAAAGCGTCGCTAATTCTCAGTT
1 TTTAGTGGCGTTTTTTAAAAGCGCCGCTAATTCTCAGTT
* *
23149977 TTT-GCGGCGTTTTTTATGAAAGCGCCACTAATTCTCTA-TT
1 TTTAGTGGCGTTTTTTA--AAAGCGCCGCTAATTCTC-AGTT
*
23150017 TTTAGTGGCGTTTTTGTAAAAACGCCGCTAAT
1 TTTAGTGGCGTTTTT-TAAAAGCGCCGCTAAT
23150049 GCCTCTGCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
38 10 0.17
39 3 0.05
40 33 0.56
41 11 0.19
42 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (39 bp):
TTTAGTGGCGTTTTTTAAAAGCGCCGCTAATTCTCAGTT
Found at i:23150118 original size:25 final size:25
Alignment explanation
Indices: 23150084--23150134 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
23150074 ACTTCGTTTT
*
23150084 GCCTTATTTGAAATTTTTTTGTGGC
1 GCCTTATTTGAAATTTTTTTGCGGC
23150109 GCCTTATTTGAAATTTTTTTGCGGC
1 GCCTTATTTGAAATTTTTTTGCGGC
23150134 G
1 G
23150135 TTTTTGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.14, G:0.22, T:0.49
Consensus pattern (25 bp):
GCCTTATTTGAAATTTTTTTGCGGC
Found at i:23150353 original size:2 final size:2
Alignment explanation
Indices: 23150346--23150371 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23150336 AATTCAAATA
23150346 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23150372 TCAAAACCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23150589 original size:13 final size:13
Alignment explanation
Indices: 23150553--23150591 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
23150543 TGCATCTTAA
*
23150553 AATTAAAGTACTT
1 AATTAAAGTATTT
23150566 AATTAAAGTATTT
1 AATTAAAGTATTT
23150579 AATTAAAGTATTT
1 AATTAAAGTATTT
23150592 TAAATTATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTAAAGTATTT
Found at i:23151143 original size:28 final size:28
Alignment explanation
Indices: 23151112--23151178 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
23151102 AGTTTATGGA
* *
23151112 TTAGTGTTTATGGTTT-ATGTTTTAAAAT
1 TTAGGGTTTAAGGTTTAATG-TTTAAAAT
*
23151140 TTAGGGTTTAAGGTTTAATGTTTAAGAT
1 TTAGGGTTTAAGGTTTAATGTTTAAAAT
23151168 TTAAGGGTTTA
1 TT-AGGGTTTA
23151179 CAGAAAGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (28 bp):
TTAGGGTTTAAGGTTTAATGTTTAAAAT
Found at i:23151163 original size:21 final size:21
Alignment explanation
Indices: 23151097--23151178 Score: 56
Period size: 21 Copynumber: 3.9 Consensus size: 21
23151087 GGTTTAGGGT
* * * *
23151097 TTTAGAGTTTATGGATTAGTG
1 TTTAGGGTTTAAGGTTTAATG
* * * **
23151118 TTTATGGTTTATGTTTTAAAA
1 TTTAGGGTTTAAGGTTTAATG
23151139 TTTAGGGTTTAAGGTTTAATG
1 TTTAGGGTTTAAGGTTTAATG
* *
23151160 TTTAAGATTTAAGGGTTTA
1 TTTAGGGTTTAA-GGTTTA
23151179 CAGAAAGCCA
Statistics
Matches: 46, Mismatches: 14, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
21 40 0.87
22 6 0.13
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTTTAATG
Found at i:23151538 original size:41 final size:41
Alignment explanation
Indices: 23151492--23151802 Score: 310
Period size: 41 Copynumber: 7.6 Consensus size: 41
23151482 AAATGCCGCT
* *
23151492 ATTGATCAGTGTTTAGTGGCATTTTGGATAGAAACGCCACA
1 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
23151533 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
1 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
* *
23151574 ATTGATCAGCT-TTTAGTGGCGTTTTGGAGAAAAACGCCATA
1 ATTGATCAG-TGTTTAGTGGCGTTTTGGATAAAAACGCCACA
* * * *
23151615 ATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAATGCCGCA
1 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
* * * * * *
23151656 ATTGATCAGTTTTTAGTGGC-ATTTGGTATTAAAACACCGCT
1 ATTGATCAGTGTTTAGTGGCGTTTTGG-ATAAAAACGCCACA
* * *
23151697 ATTGATAAGCT-TTTAGTGGCG-TTTGG-TGAAAAACGCCGCT
1 ATTGATCAG-TGTTTAGTGGCGTTTTGGAT-AAAAACGCCACA
* * ** * *
23151737 ATTGACCAGTTTTTAGTGGCGTTTTGGCCAAAAACGCCGCT
1 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
* *
23151778 ATTGA-CTAGTTTTTAGTGGTGTTTT
1 ATTGATC-AGTGTTTAGTGGCGTTTT
23151803 TGCCAAAAAC
Statistics
Matches: 238, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
39 2 0.01
40 33 0.14
41 201 0.84
42 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (41 bp):
ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACA
Found at i:23151609 original size:82 final size:82
Alignment explanation
Indices: 23151480--23151842 Score: 365
Period size: 82 Copynumber: 4.4 Consensus size: 82
23151470 CGTTTGGACC
* * * * * *
23151480 AAAAATGCCGCTATTGATCAGTGTTTAGTGGCATTTTGGATAGAAACGCCACAATTGATCAGTGT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTT
23151545 TTAGTGGCGTTTTGGAT
66 TTAGTGGCGTTTTGGAT
* * * *
23151562 AAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTTGGAGAAAAACGCCATAATTGATCAGTTT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTT
*
23151627 TTAGTGGCGTTTGGGAT
66 TTAGTGGCGTTTTGGAT
* * * * * * * *
23151644 AAAAATGCCGCAATTGATCAGTTTTTAGTGGC-ATTTGGTATTAAAACACCGCTATTGATAAGCT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGG-ATAAAAACGCCACAATTGATCAGTT
23151708 TTTAGTGGCG-TTTGG-T
65 TTTAGTGGCGTTTTGGAT
* * ** * *
23151724 GAAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTGGCCAAAAACGCCGCTATTGA-CTAGT
1 -AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATC-AGT
* * **
23151788 TTTTAGTGGTGTTTTTGCC
64 TTTTAGTGGCGTTTTGGAT
* * * * *
23151807 AAAAACACCGCTATAGTTTAGTTTTTAGTGGCGTTT
1 AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTT
23151843 CAGACAAACG
Statistics
Matches: 233, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.00
81 65 0.28
82 167 0.72
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (82 bp):
AAAAACGCCGCAATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTT
TTAGTGGCGTTTTGGAT
Found at i:23151690 original size:123 final size:122
Alignment explanation
Indices: 23151468--23151796 Score: 394
Period size: 123 Copynumber: 2.7 Consensus size: 122
23151458 AACTTTTTGC
* * * * * * *
23151468 GGCGTTTGGACCAAAAATGCCGCTATTGATCAGTGTTTAGTGGCATTTTGGATAGAAACGCCACA
1 GGCGTTTGGA-GAAAAACGCCGATATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCA
* * * *
23151533 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGT
65 ATTGATCAGTTTTTAGTGGCGATTTGGATAAAAACACCACAATTGATAAGCTTTTAGT
* *
23151591 GGCGTTTTGGAGAAAAACGCC-ATAATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAATGCCGC
1 GGCG-TTTGGAGAAAAACGCCGAT-ATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGC
* * *
23151655 AATTGATCAGTTTTTAGTGGC-ATTTGGTATTAAAACACCGCTATTGATAAGCTTTTAGT
64 AATTGATCAGTTTTTAGTGGCGATTTGG-ATAAAAACACCACAATTGATAAGCTTTTAGT
* * * ** *
23151714 GGCGTTTGGTGAAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTGGCCAAAAACGCCGCTA
1 GGCGTTTGGAGAAAAACGCCGATATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAA
23151779 TTGA-CTAGTTTTTAGTGG
66 TTGATC-AGTTTTTAGTGG
23151797 TGTTTTTGCC
Statistics
Matches: 177, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
121 1 0.01
122 73 0.41
123 97 0.55
124 6 0.03
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (122 bp):
GGCGTTTGGAGAAAAACGCCGATATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAA
TTGATCAGTTTTTAGTGGCGATTTGGATAAAAACACCACAATTGATAAGCTTTTAGT
Found at i:23151808 original size:41 final size:41
Alignment explanation
Indices: 23151686--23151842 Score: 185
Period size: 41 Copynumber: 3.9 Consensus size: 41
23151676 ATTTGGTATT
* *
23151686 AAAACACCGCTATTGA-TAAGCTTTTAGTGGCGTTTGGTG--A
1 AAAACACCGCTATTGACT-AGTTTTTAGTGGCGTTT-TTGCCA
* * *
23151726 AAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTGGCCA
1 AAAACACCGCTATTGACTAGTTTTTAGTGGCGTTTTTGCCA
* *
23151767 AAAACGCCGCTATTGACTAGTTTTTAGTGGTGTTTTTGCCA
1 AAAACACCGCTATTGACTAGTTTTTAGTGGCGTTTTTGCCA
* **
23151808 AAAACACCGCTATAGTTTAGTTTTTAGTGGCGTTT
1 AAAACACCGCTATTGACTAGTTTTTAGTGGCGTTT
23151843 CAGACAAACG
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 31 0.31
41 69 0.68
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
AAAACACCGCTATTGACTAGTTTTTAGTGGCGTTTTTGCCA
Found at i:23151812 original size:122 final size:121
Alignment explanation
Indices: 23151468--23151842 Score: 403
Period size: 122 Copynumber: 3.1 Consensus size: 121
23151458 AACTTTTTGC
* * * * * *
23151468 GGCGTTTGGACCAAAAATGCCGCTATTGATCAGTGTTTAGTGGCATTTTGGATAGAAACGCCACA
1 GGCGTTTGGA-GAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCA
* * * * * *
23151533 ATTGATCAGTGTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGCTTTTAGT
65 ATTGATCAGTTTTTAGTGG-GTTTTTGATAAAAACACCGCTATTGATAAGCTTTTAGT
* * *
23151591 GGCGTTTTGGAGAAAAACGCC-ATAATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAATGCCGC
1 GGCG-TTTGGAGAAAAACGCCGCT-ATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGC
** * *
23151655 AATTGATCAGTTTTTAGTGGCATTTGGTATTAAAACACCGCTATTGATAAGCTTTTAGT
64 AATTGATCAGTTTTTAGTGGGTTTTTG-ATAAAAACACCGCTATTGATAAGCTTTTAGT
* * ** *
23151714 GGCGTTTGGTGAAAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTGGCCAAAAACGCCGCTA
1 GGCGTTTGGAGAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAA
** * * * *
23151779 TTGA-CTAGTTTTTAGTGGTGTTTTTGCCAAAAACACCGCTATAGTTTAGTTTTTAGT
66 TTGATC-AGTTTTTAGTGG-GTTTTTGATAAAAACACCGCTATTGATAAGCTTTTAGT
23151836 GGCGTTT
1 GGCGTTT
23151843 CAGACAAACG
Statistics
Matches: 211, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
121 1 0.00
122 104 0.49
123 100 0.47
124 6 0.03
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (121 bp):
GGCGTTTGGAGAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCGCAA
TTGATCAGTTTTTAGTGGGTTTTTGATAAAAACACCGCTATTGATAAGCTTTTAGT
Found at i:23152034 original size:2 final size:2
Alignment explanation
Indices: 23152021--23152055 Score: 61
Period size: 2 Copynumber: 17.0 Consensus size: 2
23152011 ATAAGTTAAT
23152021 TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23152056 ATGCCTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:23154205 original size:27 final size:27
Alignment explanation
Indices: 23154159--23154394 Score: 202
Period size: 27 Copynumber: 8.7 Consensus size: 27
23154149 ATTACTAAAA
* ** ***
23154159 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCATTT
* * *
23154186 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
23154213 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
23154240 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
23154267 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* ** * * ***
23154294 TACCTTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
23154321 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
** * * **
23154348 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
23154375 TACCCTCGATTTACTAAAAT
1 TACCCTCGATTTAC-AAAAT
23154395 ACCCCTATAG
Statistics
Matches: 170, Mismatches: 38, Indels: 1
0.81 0.18 0.00
Matches are distributed among these distances:
27 166 0.98
28 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:23154231 original size:54 final size:54
Alignment explanation
Indices: 23154159--23154394 Score: 292
Period size: 54 Copynumber: 4.4 Consensus size: 54
23154149 ATTACTAAAA
* ** *** *
23154159 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTT
* *
23154213 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTT
* * * * **
23154267 TACCCTCGATTTACAGAATTACTATTTTACCTTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTT
* * * *
23154321 TACCCTCGATTTACAGAATTACCGTTTTACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTT
23154375 TACCCTCGATTTACTAAAAT
1 TACCCTCGATTTAC-AAAAT
23154395 ACCCCTATAG
Statistics
Matches: 159, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 155 0.97
55 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTT
Found at i:23154279 original size:81 final size:81
Alignment explanation
Indices: 23154159--23154394 Score: 274
Period size: 81 Copynumber: 2.9 Consensus size: 81
23154149 ATTACTAAAA
* * **** *
23154159 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATT
23154224 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * **
23154240 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCTTTAATT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATT
* * ***
23154305 TATAGAATTATTGTTT
66 TACAAAATTACCATTT
* * * *
23154321 TACCCTCGATTTACAGAATTACCGTTTTACCCTTAATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATT
23154386 TACTAAAAT
66 TAC-AAAAT
23154395 ACCCCTATAG
Statistics
Matches: 126, Mismatches: 28, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
81 122 0.97
82 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:23154478 original size:54 final size:54
Alignment explanation
Indices: 23154386--23154492 Score: 178
Period size: 54 Copynumber: 2.0 Consensus size: 54
23154376 ACCCTCGATT
23154386 TACTAAAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTAGGGTAAAAA
1 TACTAAAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTAGGGTAAAAA
* * * *
23154440 TACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAA
1 TACTAAAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTAGGGTAAAA
23154493 TTACCATTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (54 bp):
TACTAAAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTAGGGTAAAAA
Found at i:23154494 original size:27 final size:27
Alignment explanation
Indices: 23154391--23154497 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
23154381 CGATTTACTA
* * *
23154391 AAATACCCCTATAGGGTAGAATCACCG
1 AAATACCCCTGTAGGGTAAAATTACCG
* * *
23154418 AAATACCCTTGTAGGGTAAAAATACTG
1 AAATACCCCTGTAGGGTAAAATTACCG
*
23154445 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAAAATTACCG
* *
23154472 AGATACCCTTGTAGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAAAATTACC
23154498 ATTTTATCCC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAAAATTACCG
Found at i:23154898 original size:27 final size:26
Alignment explanation
Indices: 23154846--23154905 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
23154836 ATATATATAT
*
23154846 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
23154872 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
23154899 ATATCTG
1 ATATCTG
23154906 GCAGCTTAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:23155058 original size:25 final size:25
Alignment explanation
Indices: 23155024--23155090 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
23155014 TTGCATTCAC
*
23155024 ATTCTAATTCTGATTCTGTTACCTG
1 ATTCTAATTCTGATTCTGTCACCTG
*
23155049 ATAT-TGATTCTGATTCTGTCACCTG
1 AT-TCTAATTCTGATTCTGTCACCTG
23155074 ATTCTAATTCTGATTCT
1 ATTCTAATTCTGATTCT
23155091 TATTTTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTAATTCTGATTCTGTCACCTG
Found at i:23155088 original size:12 final size:12
Alignment explanation
Indices: 23155071--23155111 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
23155061 ATTCTGTCAC
23155071 CTGATTCTAATT
1 CTGATTCTAATT
*
23155083 CTGATTCTTATT
1 CTGATTCTAATT
* *
23155095 TTGATTCTAGTT
1 CTGATTCTAATT
23155107 CTGAT
1 CTGAT
23155112 AATGTTTCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.54
Consensus pattern (12 bp):
CTGATTCTAATT
Found at i:23155198 original size:34 final size:34
Alignment explanation
Indices: 23155125--23155198 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
23155115 GTTTCTTATT
***
23155125 CTATAATGGGCTAAAGCCCATCTGGTACTGTCTG
1 CTATAATGGGCTAAAGCCCATCTGGTACTGTAAA
*
23155159 TTATAATGGGCTAAAGGCCCAAT-TGGTACTG-AAA
1 CTATAATGGGCTAAA-GCCC-ATCTGGTACTGTAAA
23155193 CTATAA
1 CTATAA
23155199 GTAGGGCTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
34 19 0.58
35 12 0.36
36 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (34 bp):
CTATAATGGGCTAAAGCCCATCTGGTACTGTAAA
Found at i:23156090 original size:163 final size:163
Alignment explanation
Indices: 23155804--23156117 Score: 436
Period size: 163 Copynumber: 1.9 Consensus size: 163
23155794 TGATGTTCGT
* * *
23155804 CATTCATTTGGTGTCTGCCCAAAAACATTGTCTTTAGATGGTCATCATGAGATCAGTTCTTTAGA
1 CATTCATTTGGTGTCCGCCCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
* **
23155869 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTTAGAGTCTTGCCAC
66 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
*
23155934 GAAGACATCCTTTTAACAGAGTTTGCCATAAGG
131 AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
* * * *
23155967 CATTCATTTGGTGTCCG-CCAAAAGGCGTTGTCTTCAGTTGGTCATCATGAGATCCGTTCTTCAG
1 CATTCATTTGGTGTCCGCCCAAAA-ACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAG
** * *
23156031 ATTCTGCCACGAAGGCATT-CTTTTCCAAAGATAGCTACAAA-AGTTTTTCTTTCAGAGTCTCAC
65 ATTCCACCACGAAGGCATTCCTTTT-CAAAGATAGCTACAAAGA-CTTTCCTTTCAGAGTCTCAC
*
23156094 CACAAAGACATCCTTTTAATAGAG
128 CACAAAGACATCCTTTTAACAGAG
23156118 ATAGTCACAA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
162 12 0.09
163 120 0.91
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (163 bp):
CATTCATTTGGTGTCCGCCCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
Found at i:23156127 original size:29 final size:29
Alignment explanation
Indices: 23156093--23156426 Score: 326
Period size: 29 Copynumber: 11.6 Consensus size: 29
23156083 CAGAGTCTCA
23156093 CCACAAAGACATCCTTTTAATAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* *
23156122 TCAC-AAGGCATTCC-TTTAACTA-AGATAG
1 CCACAAAGACA-TCCTTTTAA-TAGAGATAG
* * *
23156150 CCACAAAGGCATCCTCTTAATAGAGATAA
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
23156179 CCACAAAGGCATCCTCTTAACAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
23156208 CCACAAAGACATCCTTTTAATAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
23156237 CCATAAAGGCATCCTTTT--TCAGATATCA-
1 CCACAAAGACATCCTTTTAAT-AGAGAT-AG
* * * *
23156265 CCATAAAGACTTCCTTTTAACAGAGATCG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * * *
23156294 TCACAAAGACTTCCTTCTAACAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
23156323 CCACAAAGACATCCTTTTAAT-GAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* *
23156351 CCATAAAGTCATCCTTTTAACT-GAGATAG
1 CCACAAAGACATCCTTTTAA-TAGAGATAG
** *
23156380 CCACAAACG-CATATTTTTAACAGAGATAG
1 CCACAAA-GACATCCTTTTAATAGAGATAG
*
23156409 CCATAAAGACATCCTTTT
1 CCACAAAGACATCCTTTT
23156427 CAGATATCTC
Statistics
Matches: 256, Mismatches: 35, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.00
28 71 0.28
29 183 0.71
30 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (29 bp):
CCACAAAGACATCCTTTTAATAGAGATAG
Found at i:23156236 original size:115 final size:115
Alignment explanation
Indices: 23156093--23156517 Score: 407
Period size: 115 Copynumber: 3.7 Consensus size: 115
23156083 CAGAGTCTCA
* *
23156093 CCACAAAGACATCCTTTTAATAGAGATAGTCA-CAAGGCATTCCTTTAACTAAGATAGCCACAAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCA-TCCTTTAACTAAGATAGCCACAAA
* * * *
23156157 GGCATCCTCTTAATAGAGATAACCACAAAGGCATCC-TCTTAACAGAGATAG
65 GGCATCCTTTTAACAGAGATAGCCACAAAGACATCCTTC-TAACAGAGATAG
* * * *
23156208 CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTT--TTCAGATATCACCATAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTTAACTAAGATA--GCCACAA
* * * * *
23156271 AGACTTCCTTTTAACAGAGATCGTCACAAAGACTTCCTTCTAACAGAGATAG
64 AGGCATCCTTTTAACAGAGATAGCCACAAAGACATCCTTCTAACAGAGATAG
* *
23156323 CCACAAAGACATCCTTTTAAT-GAGATAGCCATAAAGTCATCCTTTTAACTGAGATAGCCACAAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCATCC-TTTAACTAAGATAGCCACAAA
* ** * * * **
23156387 CGCATATTTTTAACAGAGATAGCCATAAAGACATCCTT-T-TCAGATATCT
65 GGCATCCTTTTAACAGAGATAGCCACAAAGACATCCTTCTAACAGAGATAG
* * * * ** ** * *
23156436 CCACATAGACATCTTTTTAACAGCGATAGCCATAAAGGTGTCCTTTTTCAAAAATCA-CCACAAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTTAACTAAGAT-AGCCAC-AA
*
23156500 AGGCTTCCTTTTAACAGA
64 AGGCATCCTTTTAACAGA
23156518 AATTGCCATA
Statistics
Matches: 251, Mismatches: 49, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
113 41 0.16
114 55 0.22
115 141 0.56
116 8 0.03
117 6 0.02
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.26
Consensus pattern (115 bp):
CCACAAAGACATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTTAACTAAGATAGCCACAAAG
GCATCCTTTTAACAGAGATAGCCACAAAGACATCCTTCTAACAGAGATAG
Found at i:23156279 original size:28 final size:29
Alignment explanation
Indices: 23156161--23156517 Score: 148
Period size: 29 Copynumber: 12.4 Consensus size: 29
23156151 CACAAAGGCA
* * * * * *
23156161 TCCTCTTAATAGAGATAACCACAAAGGCA
1 TCCTTTTAACAGAGATCACCATAAAGACT
* * *
23156190 TCCTCTTAACAGAGAT-AGCCACAAAGACA
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* * *
23156219 TCCTTTTAATAGAGAT-AGCCATAAAGGCA
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* *
23156248 TCCTTTT-TCAGATATCACCATAAAGACT
1 TCCTTTTAACAGAGATCACCATAAAGACT
** *
23156276 TCCTTTTAACAGAGATCGTCACAAAGACT
1 TCCTTTTAACAGAGATCACCATAAAGACT
* * *
23156305 TCCTTCTAACAGAGAT-AGCCACAAAGACA
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* * *
23156334 TCCTTTTAA-TGAGAT-AGCCATAAAGTCA
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* * *
23156362 TCCTTTTAACTGAGAT-AGCCACAAACG-CA
1 TCCTTTTAACAGAGATCA-CCATAAA-GACT
** *
23156391 TATTTTTAACAGAGAT-AGCCATAAAGACA
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* * * * *
23156420 TCCTTTT--CAGATATCTCCACATAGACA
1 TCCTTTTAACAGAGATCACCATAAAGACT
* * *
23156447 TCTTTTTAACAGCGAT-AGCCATAAAG-GT
1 TCCTTTTAACAGAGATCA-CCATAAAGACT
* * * * *
23156475 GTCCTTTT-TCAAAAATCACCACAAAAGGCT
1 -TCCTTTTAACAGAGATCACCA-TAAAGACT
23156505 TCCTTTTAACAGA
1 TCCTTTTAACAGA
23156518 AATTGCCATA
Statistics
Matches: 260, Mismatches: 52, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
27 21 0.08
28 55 0.21
29 179 0.69
30 5 0.02
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (29 bp):
TCCTTTTAACAGAGATCACCATAAAGACT
Found at i:23156483 original size:86 final size:85
Alignment explanation
Indices: 23156080--23156482 Score: 366
Period size: 86 Copynumber: 4.7 Consensus size: 85
23156070 AAAGTTTTTC
* * * *
23156080 TTTCAGAGTCTCACCACAAAGACATCCTTTTAATAGAGATAGTCAC-AAGGCATTCC-TTTAACT
1 TTTCAGA-TATCACCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCA-TCCTTTTAAC-
* *
23156143 A-AGATAGCCACAAAGGCATCCT
63 AGAGATAGCCATAAAGACATCCT
* * * * * * *
23156165 CTTAAT-AGAGATAACCACAAAGGCATCCTCTTAACAGAGATAGCCACAAAGACATCCTTTTAAT
1 -TT--TCAGATATCACCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAAC
*
23156229 AGAGATAGCCATAAAGGCATCCTT
63 AGAGATAGCCATAAAGACATCC-T
* * * * * *
23156253 TTTCAGATATCACCATAAAGACTTCCTTTTAACAGAGATCGTCACAAAGACTTCCTTCTAACAGA
1 TTTCAGATATCACCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
*
23156318 GATAGCCACAAAGACATCCT
66 GATAGCCATAAAGACATCCT
* * * * * **
23156338 TTTAATGAGAT-AGCCATAAAGTCATCCTTTTAACTGAGATAGCCACAAACGCATATTTTTAACA
1 TTTCA-GATATCA-CCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACA
23156402 GAGATAGCCATAAAGACATCCT
64 GAGATAGCCATAAAGACATCCT
* * * * * * **
23156424 TTTCAGATATCTCCACATAGACATCTTTTTAACAGCGATAGCCATAAAGGTGTCCTTTT
1 TTTCAGATATCACCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTT
23156483 TCAAAAATCA
Statistics
Matches: 255, Mismatches: 52, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
85 46 0.18
86 173 0.68
87 34 0.13
88 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (85 bp):
TTTCAGATATCACCATAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
GATAGCCATAAAGACATCCT
Found at i:23156903 original size:32 final size:32
Alignment explanation
Indices: 23156867--23156931 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
23156857 CTTAGGGACT
* *
23156867 CACTTGACTTACATCTTTAGCAGCTCTAAACA
1 CACTTAACTTACATCTTTAACAGCTCTAAACA
** *
23156899 CACTTAACTTATGTCTTTAACAGCTTTAAACA
1 CACTTAACTTACATCTTTAACAGCTCTAAACA
23156931 C
1 C
23156932 CAGATCCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (32 bp):
CACTTAACTTACATCTTTAACAGCTCTAAACA
Found at i:23158648 original size:42 final size:42
Alignment explanation
Indices: 23158532--23158680 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 42
23158522 AAACCAATGT
* * *
23158532 CATA-TCCCAGATATGGTCTTACATGGAATCTTATATTGATGC
1 CATAGTCCCAGATATGGTCTTACA-CGAATCTCATATCGATGC
* * * *
23158574 CAATAG-CCTAGCTATAGTCTTACACGATTCTCATATCGATGC
1 C-ATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
* *
23158616 CAT-GTCCCAGAAATGGTCTTACACGAAATCTCATAACGATGC
1 CATAGTCCCAGATATGGTCTTACACG-AATCTCATATCGATGC
* * *
23158658 CATA-TCTCAAATATGTTCTTACA
1 CATAGTCCCAGATATGGTCTTACA
23158681 TGTAAACTCA
Statistics
Matches: 85, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 18 0.21
42 48 0.56
43 18 0.21
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
CATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
Found at i:23168550 original size:21 final size:21
Alignment explanation
Indices: 23168493--23168551 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
23168483 ATAACTTCCG
**
23168493 AACCCTAAAATATAAACTCTA
1 AACCCTAAACCATAAACTCTA
23168514 AACCCTAAACCATAAACTCTA
1 AACCCTAAACCATAAACTCTA
* * *
23168535 AGCCCTAAGCCCTAAAC
1 AACCCTAAACCATAAAC
23168552 CATAAAACAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (21 bp):
AACCCTAAACCATAAACTCTA
Found at i:23170050 original size:23 final size:23
Alignment explanation
Indices: 23170019--23170062 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23170009 TAAATATGTA
* *
23170019 TAAATCTAAAAAATTCTTAAAAT
1 TAAACCTAAAAAATTATTAAAAT
23170042 TAAACCTAAAAAATTATTAAA
1 TAAACCTAAAAAATTATTAAA
23170063 CTAACATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAACCTAAAAAATTATTAAAAT
Found at i:23180263 original size:40 final size:41
Alignment explanation
Indices: 23180203--23180281 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 41
23180193 TGGCGTTTTT
*
23180203 AGCGACGTTTTATCAAAAAACGCTGCTAAAAA-AGAGCAAC
1 AGCGACGTTTTATCAAAAAACGCCGCTAAAAACAGAGCAAC
*
23180243 AGCGGCGTTTTAGT-AAAAAACGCCGCTAAAAACAGAGCA
1 AGCGACGTTTTA-TCAAAAAACGCCGCTAAAAACAGAGCA
23180282 TTAGCGGTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
40 28 0.80
41 7 0.20
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.16
Consensus pattern (41 bp):
AGCGACGTTTTATCAAAAAACGCCGCTAAAAACAGAGCAAC
Found at i:23180280 original size:41 final size:40
Alignment explanation
Indices: 23180219--23180435 Score: 244
Period size: 41 Copynumber: 5.4 Consensus size: 40
23180209 GTTTTATCAA
* ** *
23180219 AAAACGCTGCTAAAAA-AGAGCAACAGCGGCG-TTTTAGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
*
23180257 AAAAAACGCCGCTAAAAACAGAGCATTAGCGGTGCTTTTGGT
1 --AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
* * *
23180299 AAAATGCCGCTAAAAACCAGAGTATTAGCGGTGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
*
23180340 AAAACGCAGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
* * *
23180381 AAAACGCCGCTAAAAACCTA-AGCATTAGCAGCACTTTTAGT
1 AAAACGCCGCTAAAAA-C-AGAGCATTAGCGGCGCTTTTGGT
23180422 -AAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
23180436 GTCATATAAC
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
40 44 0.28
41 107 0.68
42 7 0.04
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:23180308 original size:40 final size:41
Alignment explanation
Indices: 23180259--23180435 Score: 252
Period size: 41 Copynumber: 4.4 Consensus size: 41
23180249 GTTTTAGTAA
23180259 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGTGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGTGCTTTTGGT
* *
23180299 AAAATGCCGCTAAAAACCAGAGTATTAGCGGTGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGTGCTTTTGGT
* *
23180340 AAAACGCAGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGTGCTTTTGGT
* ** *
23180381 AAAACGCCGCTAAAAACCTA-AGCATTAGCAGCACTTTTAGT
1 AAAACGCCGCTAAAAACC-AGAGCATTAGCGGTGCTTTTGGT
23180422 -AAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
23180436 GTCATATAAC
Statistics
Matches: 125, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
40 29 0.23
41 95 0.76
42 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGTGCTTTTGGT
Found at i:23180635 original size:21 final size:21
Alignment explanation
Indices: 23180606--23180688 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 21
23180596 TAGTTTAAGG
*
23180606 TTTATGGTTTAAGATATATGA
1 TTTAGGGTTTAAGATATATGA
*
23180627 TTTAGGGTTTAAGCAGGTTTATGA
1 TTTAGGGTTTAAG-A--TATATGA
* *
23180651 GTTAACTATGGTTTAAGATATATGG
1 -TT---TAGGGTTTAAGATATATGA
23180676 TTTAGGGTTTAAG
1 TTTAGGGTTTAAG
23180689 GTTTAAGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
21 22 0.45
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (21 bp):
TTTAGGGTTTAAGATATATGA
Found at i:23180666 original size:49 final size:46
Alignment explanation
Indices: 23180608--23180704 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 46
23180598 GTTTAAGGTT
*
23180608 TATGGTTTAAGATATATGATTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTT-A--AGGTTTAAGAGTTAAC
*
23180657 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
23180703 TA
1 TA
23180705 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 17 0.37
48 1 0.02
49 28 0.61
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (46 bp):
TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:23185046 original size:43 final size:43
Alignment explanation
Indices: 23184985--23185320 Score: 419
Period size: 43 Copynumber: 7.8 Consensus size: 43
23184975 TTTCATGACC
* *
23184985 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGGCT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGACT
* **
23185028 TTTAGCGGTGTTTGTGGGAAAAGCGCCATTAAAGGTCGCGACTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGAC-T
* *
23185072 TTTAGTGGCGTTTGTGGGAAAAGCG-CGCTAAAGGTCGCGATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGACT
* * *
23185114 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATG-GGC-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC--GCGACT
*
23185157 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCGCGACTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGAC-T
* * *
23185201 TTTGGTGGCGTTTGTGGGAAAAGCG-CGCTAAAGGTCGCGATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGACT
* * ** * *
23185243 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGCC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGACT
*
23185286 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
23185321 CCATGACCTT
Statistics
Matches: 252, Mismatches: 33, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.00
42 49 0.19
43 153 0.61
44 48 0.19
45 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGACT
Found at i:23185215 original size:129 final size:129
Alignment explanation
Indices: 23184985--23185320 Score: 575
Period size: 129 Copynumber: 2.6 Consensus size: 129
23184975 TTTCATGACC
* * * *
23184985 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA-CGGCTTTTAGCGGTGTTTGTGGGAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGC-TTTAGCGGCGTTTGTGGGAAA
*
23185049 AGCGCCATTAAAGGTCGCGACTTTTTAGTGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCGCGATT
65 AGCGCCGTTAAAGGTCGCGACTTTTTAGTGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCGCGATT
23185114 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTTGTGGGAAAA
*
23185179 GCGCCGTTAAAGGTCGCGACTTTTTGGTGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCGCGATT
66 GCGCCGTTAAAGGTCGCGACTTTTTAGTGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCGCGATT
*
23185243 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGCCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTTGTGGGAAAA
* *
23185308 GCACCGCTAAAGG
66 GCGCCGTTAAAGG
23185321 CCATGACCTT
Statistics
Matches: 197, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
129 194 0.98
130 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (129 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTTGTGGGAAAA
GCGCCGTTAAAGGTCGCGACTTTTTAGTGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCGCGATT
Found at i:23186073 original size:19 final size:17
Alignment explanation
Indices: 23186045--23186093 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 17
23186035 AAAAAATCAA
*
23186045 AATAAAAAATAAAAAAT
1 AATATAAAATAAAAAAT
23186062 ATATATACAAATTCAAAAAAT
1 A-ATATA-AAA-T-AAAAAAT
23186083 AATATAAAATA
1 AATATAAAATA
23186094 TATATAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
17 2 0.07
18 5 0.19
19 6 0.22
20 6 0.22
21 8 0.30
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (17 bp):
AATATAAAATAAAAAAT
Found at i:23186079 original size:20 final size:19
Alignment explanation
Indices: 23186028--23186092 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
23186018 AAAAGTTATA
* *
23186028 AAAATTAAAAAAATCAAAAT
1 AAAATTCAAAAAAT-AATAT
*
23186048 AAAAAAT-AAAAAATATATAT
1 -AAAATTCAAAAAATA-ATAT
23186068 ACAAATTCAAAAAATAATAT
1 A-AAATTCAAAAAATAATAT
23186088 AAAAT
1 AAAAT
23186093 ATATATAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 6 0.16
20 19 0.50
21 13 0.34
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAATTCAAAAAATAATAT
Found at i:23189175 original size:21 final size:21
Alignment explanation
Indices: 23189149--23189195 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
23189139 GCTTTTATTT
23189149 TATTTTTTACTT-TTTTTTC-C
1 TATTTTTTA-TTATTTTTTCAC
23189169 TATTTTTTATTATTTTTTCAC
1 TATTTTTTATTATTTTTTCAC
23189190 TATTTT
1 TATTTT
23189196 GCTACGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.08
20 16 0.64
21 7 0.28
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (21 bp):
TATTTTTTATTATTTTTTCAC
Found at i:23189278 original size:17 final size:19
Alignment explanation
Indices: 23189245--23189279 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
23189235 GTTGTTTAGA
23189245 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
23189264 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
23189280 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:23190142 original size:40 final size:39
Alignment explanation
Indices: 23190055--23190144 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 39
23190045 TAAAAATATA
* *
23190055 TTTAATACAATAAAATATTTATTATATTTATTTGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTATTAGTGTTT
23190094 TTTAAATATAATAAAATATTTATTATATTTATGGTAGTG-TT
1 TTT-AATATAATAAAATATTTATTATATTTAT--TAGTGTTT
23190135 TTTAATATAA
1 TTTAATATAA
23190145 ATATTTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
39 3 0.07
40 34 0.74
41 5 0.11
42 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (39 bp):
TTTAATATAATAAAATATTTATTATATTTATTAGTGTTT
Found at i:23196929 original size:9 final size:8
Alignment explanation
Indices: 23196908--23196995 Score: 52
Period size: 9 Copynumber: 10.1 Consensus size: 8
23196898 AAAAAATTGA
*
23196908 TATAAATT
1 TATAAAAT
23196916 TATAAAAGT
1 TATAAAA-T
*
23196925 TATAAAAA
1 TATAAAAT
* *
23196933 AAT-AACT
1 TATAAAAT
23196940 TATAAATAT
1 TATAAA-AT
23196949 TATAAAAT
1 TATAAAAT
*
23196957 TCTAATAAGT
1 TATAA-AA-T
23196967 TATAAAATTT
1 TATAAAA--T
23196977 TATAAAAAT
1 TAT-AAAAT
23196986 TAATAAAAT
1 T-ATAAAAT
23196995 T
1 T
23196996 TATTAAAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
7 4 0.06
8 16 0.26
9 27 0.44
10 11 0.18
11 4 0.06
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (8 bp):
TATAAAAT
Found at i:23196969 original size:27 final size:27
Alignment explanation
Indices: 23196924--23196991 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
23196914 TTTATAAAAG
23196924 TTATAAAAA--AATAACTTAT-AAATA
1 TTATAAAAATTAATAACTTATAAAATA
* * *
23196948 TTATAAAATTCTAATAAGTTATAAAATT
1 TTATAAAAAT-TAATAACTTATAAAATA
23196976 TTATAAAAATTAATAA
1 TTATAAAAATTAATAA
23196992 AATTTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 8 0.22
27 15 0.42
28 13 0.36
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (27 bp):
TTATAAAAATTAATAACTTATAAAATA
Found at i:23197036 original size:22 final size:22
Alignment explanation
Indices: 23196985--23197036 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
23196975 TTTATAAAAA
* *
23196985 TTAATAAAATTTATTAAAAATT
1 TTAAAAAAATGTATTAAAAATT
* *
23197007 TTATAAAAATGTA-TAAGAATT
1 TTAAAAAAATGTATTAAAAATT
23197028 CTTAAAAAA
1 -TTAAAAAA
23197037 TTATAAACAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
TTAAAAAAATGTATTAAAAATT
Found at i:23197241 original size:9 final size:9
Alignment explanation
Indices: 23196877--23197259 Score: 158
Period size: 10 Copynumber: 40.6 Consensus size: 9
23196867 AATAAATGAT
*
23196877 TAAAAATCA
1 TAAAAATTA
23196886 CTAAAAATTA
1 -TAAAAATTA
23196896 TTAAAAAATTGA
1 -T-AAAAATT-A
*
23196908 TATAAATTTA
1 TA-AAAATTA
*
23196918 TAAAAGTTA
1 TAAAAATTA
23196927 TAAAAA--A
1 TAAAAATTA
* *
23196934 -ATAACTTA
1 TAAAAATTA
*
23196942 TAAATATTA
1 TAAAAATTA
*
23196951 T-AAAATTC
1 TAAAAATTA
*
23196959 TAATAAGTTA
1 TAA-AAATTA
*
23196969 TAAAATTTTA
1 TAAAA-ATTA
23196979 TAAAAATTAA
1 TAAAAATT-A
*
23196989 TAAAATTTA
1 TAAAAATTA
23196998 TTAAAAATTTTA
1 -TAAAAA--TTA
23197010 TAAAAATGTA
1 TAAAAAT-TA
* *
23197020 TAAGAATTCT
1 TAAAAATT-A
23197030 TAAAAAATTA
1 T-AAAAATTA
*
23197040 TAAACATT-
1 TAAAAATTA
* *
23197048 TAAAATTTTT
1 TAAAA-ATTA
23197058 TAAAAA-TA
1 TAAAAATTA
*
23197066 TTAAAATTGA
1 TAAAAATT-A
23197076 TAAAAACTTA
1 TAAAAA-TTA
*
23197086 TAAAAAGTA
1 TAAAAATTA
*
23197095 TAAAAAATCA
1 T-AAAAATTA
** *
23197105 TAAATTTTTT
1 TAAA-AATTA
23197115 TAAAAATTA
1 TAAAAATTA
* *
23197124 CAAAAATCA
1 TAAAAATTA
*
23197133 -AATAATTA
1 TAAAAATTA
*
23197141 TAAAAA-AA
1 TAAAAATTA
23197149 T-AAAATTAA
1 TAAAAATT-A
*
23197158 TAAAATATATT
1 TAAAA-AT-TA
*
23197169 TAAAATTCTA
1 TAAAAAT-TA
23197179 TAAAAATTAA
1 TAAAAATT-A
23197189 TAAAAACTTA
1 TAAAAA-TTA
23197199 TAAATAA-TA
1 TAAA-AATTA
*
23197208 TAAAAATTT
1 TAAAAATTA
*
23197217 TAATAAAGTA
1 TAA-AAATTA
*
23197227 TAAAAATTG
1 TAAAAATTA
23197236 TAAAAATTA
1 TAAAAATTA
23197245 TTAAAAGA-TA
1 -TAAAA-ATTA
23197255 TAAAA
1 TAAAA
23197260 TTTTTAATTT
Statistics
Matches: 280, Mismatches: 57, Indels: 73
0.68 0.14 0.18
Matches are distributed among these distances:
6 3 0.01
7 5 0.02
8 27 0.10
9 83 0.30
10 118 0.42
11 39 0.14
12 5 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:23197250 original size:18 final size:18
Alignment explanation
Indices: 23196877--23197259 Score: 158
Period size: 19 Copynumber: 20.3 Consensus size: 18
23196867 AATAAATGAT
*
23196877 TAAAAATCACTAAAAATTA
1 TAAAAATTA-TAAAAATTA
*
23196896 TTAAAAAATTGATATAAATTTA
1 -T-AAAAATT-ATA-AAAATTA
*
23196918 TAAAAGTTATAAAAA--A
1 TAAAAATTATAAAAATTA
* * *
23196934 -ATAACTTATAAATATTA
1 TAAAAATTATAAAAATTA
* *
23196951 T-AAAATTCTAATAAGTTA
1 TAAAAATTATAA-AAATTA
*
23196969 TAAAATTTTATAAAAATTAA
1 TAAAA-ATTATAAAAATT-A
*
23196989 TAAAATTTATTAAAAATTTTA
1 TAAAAATTA-TAAAAA--TTA
* *
23197010 TAAAAATGTATAAGAATTCT
1 TAAAAAT-TATAAAAATT-A
*
23197030 TAAAAAATTATAAACATT-
1 T-AAAAATTATAAAAATTA
* *
23197048 TAAAATTTTTTAAAAA-TA
1 TAAAA-ATTATAAAAATTA
*
23197066 TTAAAATTGATAAAAACTTA
1 TAAAAATT-ATAAAAA-TTA
* *
23197086 TAAAAAGTATAAAAAATCA
1 TAAAAATTAT-AAAAATTA
** *
23197105 TAAATTTTTTTAAAAATTA
1 TAAA-AATTATAAAAATTA
* * *
23197124 CAAAAATCA-AATAATTA
1 TAAAAATTATAAAAATTA
*
23197141 TAAAAA-AAT-AAAATTAA
1 TAAAAATTATAAAAATT-A
* *
23197158 TAAAATATATTTAAAATTCTA
1 TAAAA-AT-TATAAAAAT-TA
23197179 TAAAAATTAATAAAAACTTA
1 TAAAAATT-ATAAAAA-TTA
*
23197199 TAAATAA-TATAAAAATTT
1 TAAA-AATTATAAAAATTA
* *
23197217 TAATAAAGTATAAAAATTG
1 TAA-AAATTATAAAAATTA
23197236 TAAAAATTATTAAAAGA-TA
1 TAAAAATTA-TAAAA-ATTA
23197255 TAAAA
1 TAAAA
23197260 TTTTTAATTT
Statistics
Matches: 274, Mismatches: 52, Indels: 75
0.68 0.13 0.19
Matches are distributed among these distances:
15 11 0.04
16 7 0.03
17 33 0.12
18 40 0.15
19 67 0.24
20 64 0.23
21 40 0.15
22 12 0.04
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAAATTATAAAAATTA
Found at i:23197258 original size:47 final size:48
Alignment explanation
Indices: 23197177--23197267 Score: 125
Period size: 47 Copynumber: 1.9 Consensus size: 48
23197167 TTTAAAATTC
23197177 TATAAAAATTAATAAAAACTTATAAATAATATAAAAATTTTAATAAAG
1 TATAAAAATTAATAAAAACTTATAAATAATATAAAAATTTTAATAAAG
* *
23197225 TATAAAAATT-GTAAAAA-TTATTAAA-AGATATAAAATTTTTAAT
1 TATAAAAATTAATAAAAACTTA-TAAATA-ATATAAAAATTTTAAT
23197268 TTTTAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
46 4 0.10
47 25 0.64
48 10 0.26
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (48 bp):
TATAAAAATTAATAAAAACTTATAAATAATATAAAAATTTTAATAAAG
Found at i:23204145 original size:568 final size:569
Alignment explanation
Indices: 23202550--23207766 Score: 4639
Period size: 570 Copynumber: 9.2 Consensus size: 569
23202540 ACAAGTTACA
* * * ** * *
23202550 ATAGAGAAATCAATTTTGTTACATTGTCTTTGTGATGCTGAAGCTATTTCTCTTCATCATATGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * * *
23202615 TGAAACGAGGCTTGAAATGGATAGATCTACTAAAAAAAAACAAGGAACTATCTAAAAAGCTTTAG
66 TGAAACGAGGCTTGAAATGGATCGATCTTCT--AAAAAAACAAGGAACT-TTTGAAAAGCTTTCG
* * * * * *
23202680 CTAATTTACGATCACAACCTCCTACTTACAAGATTTTACGAATCTCACGATCCGTTG-ATTTACG
128 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCG-CGAATTTACG
* * * * * * **
23202744 ATCACAACTATCATTTTTAAAGCTTGCTGATTTATG-AT-CATAGCTTCAGTTTATTTATTTATG
192 ATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACA-A-CTTCAGTTCATTGATTTACA
* * * * * *
23202807 ATCAAGAACACTTCATTAAGAATTCACCGATTTACGATCGCAACTCCATTTAAACAGTTCGCTGA
255 ATCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGA
* * * *** * *
23202872 TTTACGATTACAATTTTCATTTTTAAAGCTCGCTGATTTACAATCACTATTTCAGTTCAATAATT
320 TTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATT
* * * **
23202937 TACGATCATGAACACTTCTTGGTTCACAA-GAAATATAAATTTGCTAAACTAGTTCCAAAC-TCT
385 TACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGTGG
* * * * * *
23203000 CTCTTGAGATGATTTTCAACTAGCTAATTCTGTCCTCTTTGCCCTTCAGAGCAAGTTAGATGCTA
449 C-C-AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTA
* * * * * * *
23203065 GACATGATAAATAAATG-TGTATTAAGGAAGAACTAAAAACTAACCTTGAAAGAAGGGGG
512 GAGATGATAAATAAA-GACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * ** *
23203124 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCCGAAACTACTTTTCTGAACTGA-ACGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCAC-CATACGT
* * * * * * *
23203188 TTGAAACGAGGCTCGAAATGGATTGATTTTCTCAAAAAACAAAGAACTTTCTGAAAAGC-TTCAA
65 CTGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAAACAAGGAACTTT-TGAAAAGCTTTC-G
* ** * * *
23203252 CTGATTTACGATCACGACCTTGTACTTACAGGATTTTAAAAATCTCACGGTCTGTGGAATTACAC
128 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCG-CGAATT-TAC
* * ** * * * * * *
23203317 GATCAAAACTGTCTTTTTTACTGCTCGCTAATTAACGTTTATAGCTTCAGTTCATTAATTTACAA
191 GATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAA
** * * * *
23203382 TCATGAACACTTTGTTAAGAGTTTGCC-AGTTTACGATCGCTACTTCACTTAAATAGTTCGTTAA
256 TCATGAACACTTCATTAAGAGTTCGCCGA-TTTACGATCGCAACTCCACTTAAATAGTTCGTTGA
* * * * * * * *
23203446 TTTATGATCACAACTGTCATTTTTAAAGCTCACTTATTTACAATCATGACTTCATTTCATTTATT
320 TTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATT
* * * *
23203511 TATGATCACGAACACTTCTTGGTTCATAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGTGTGGC
385 TACGATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * *
23203576 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAAAGAAAGTTCGATGCTAGAG
450 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAG
* ** * *
23203641 ATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAACTAACCTTG-A-AAGGAGG
515 ATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAGAAGGAGG
* * * * * * * *
23203694 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTAATGCTGAAGCTGCATCTCTTCACAATATGTT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * *
23203759 TGAAACAAAGCTTGTAATGGATCGATCTTCTGAAAAAACAAGGAACTATTTGAAAAGCTTTCGCT
66 TGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAAACAAGGAACT-TTTGAAAAGCTTTCGCT
* * *
23203824 GATTTACGATCACTACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCACAAATTTACGATC
130 GATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGAATTTACGATC
* * * * * * *** *
23203889 ATAACAGTCAATTGTAGAGCTCGTTGATTTACGTATACAACTTCAGGTT-ATTTATTTGTGATAA
195 ATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCA-GTTCATTGATTTACAATCA
* * * * *
23203953 TGAACACTTAATTAAGAGTTCGCTGATTTATGATCGCAACTCCACTTAAATAGTCCATTGATTTA
259 TGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTA
* * * * * * * *
23204018 TGATCAAAACTATCATCTTTAAAGCTTGTTGATTTACAATCACGGCTTTAATTCATTCATTTACG
324 CGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTACG
* * * *
23204083 ATCATGAATACGTCTTGGTTCACAAAGAAAGTAAATTTGTTGAACTAGTTCCAAGCGTGGCCAGA
389 ATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGA
* * * * *
23204148 GATGGTTTTCAACTAGCTAATTTTGACCTCTATACCGTTTAGAGCAAGTTAGATGCTAAACATGA
454 GATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGATGA
* * * * * *
23204213 TTAATAAAGGCGTATTGAGGAAGGACTCAAAACTGACCTTGAAAAAAGGAAG
519 TAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * * * ** **
23204265 ATAAAGTAATAAATTTTATTACGTTGTCTTTATGAAGCTGAAGCTAC-T-T-TTCACTGTTTGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* *
23204327 TGAAACGAGGCTTGAAATGGATCGAT-TTGCT-AAAAAA-AAGGAACTTCTTGAAAAGTTTTAGC
66 TGAAACGAGGCTTGAAATGGATCGATCTT-CTAAAAAAACAAGGAACTT-TTGAAAAGCTTTCGC
* * * * * ** * * *
23204389 TGATTTATGATCATGACCTTGTACTTACAAGATTTTACAAATCT-GTGGATCTGCGGATTTACTA
129 TGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGG-TCCGCGAATTTACGA
* * * * * * *
23204453 T-ATTAACTGTCTTTTTTACAGCTCGCTGATTTACATTTATAGCTCCAGTTCATTGATTTACAAT
193 TCA-TAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAAT
* * ** * *
23204517 CATGAACACTTCATTAAGAGTTCACCGATTTACGATCACAACTTTACCTAAATAGTTCATTGATT
257 CATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * * *
23204582 TACGATCACAACTGA-GATTTTTAAAGCTCGTTGA-TTACAATCACAGCTTTAGTTCATTGATTT
322 TACGATCACAACT-ATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTT
* ** * * * *
23204645 ATGATCATGAACACTTCCGGGTTCATAA-GAAATTTAAATTTGGTGAACTAGTTCCAAGCGTGGT
386 ACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * * *
23204709 TAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCT-GCCTTTCAAAGCAAGTTAGATTCTAGA
450 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTT-AGAGCAAGTTAGATGCTAGA
* * * ** *
23204773 GATGATAAATATAGACGTGTTGAGAAAGAACTTAAAACTGATTTTGAAAGAAGGAAG
514 GATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
** *
23204830 ATAGATAAATCAATTTTGTTACATTGT-TTT-TGAGATGCTGAAGCTACTTCTCTTCACCATACG
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAG--GCTGAAGCTACATCTCTTCACCATACG
*
23204893 TCTGAAACGAGGC-TGAAAATGGATCGATCTGCTAAAAAAAACAAGGAACTTTCTGAAAAGCTTT
64 TCTGAAACGAGGCTTG-AAATGGATCGATCTTCT-AAAAAAACAAGGAACTTT-TGAAAAGCTTT
* * * * ** * *
23204957 AG-TTAGTTTACAATCACGGCCTTCTACTTACCA-GATTTTATAAATCTCATGGTCCGTTG-ATT
126 CGCTGA-TTTACGATCACGACCTTCTACTTA-CAGGATTTTACGAATCTCACGGTCCG-CGAATT
* * * * *
23205019 TACGATCAAAACTGTCATTTTTAAAGCTCACTAATTTACG-AT-CATGATTTCAATTCATTGATT
188 TACGATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACA--ACTTCAGTTCATTGATT
* * * **
23205082 TACAATCATGAATC-GTTCATTAAGAGTTCACCGATTTACAATCATAACTCCACTTAAATAGTTC
251 TACAATCATGAA-CACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTC
* * ** * * * ** *
23205146 ATTGATTAAATATCACAACTGTTATTTTTAAAGCTCGCTGATTTACAATGACAACTTCAATTCAT
315 GTTGATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCAT
* * *
23205211 TGATTTACGATTA-GAACACTTCTTGGTTTACAAGGAATA-TAAATTAT-CTAAACTAGTT-CAA
380 TGATTTACGATCATGAACACTTCTTGGTTCACAAGGAA-AGTAAATT-TGCTGAACTAGTTCCAA
* * * * * *
23205272 GCATTG-CTGAAGATGATTTTCAACTAGCTAATTTT-AGCCTCTTTACCCTTCAGAGTAAGTTAG
443 GCGTGGCCAG-AGATGATTTTCAACTAGCTAATTTTGA-CCTCTCTACCCTTTAGAGCAAGTTAG
* * * ** * * *
23205335 ATGCTAGAGATAATGAATATAGACGTACT-AGAAAAGAACTCAAAACTAACCTCGAAAGAAGGAG
506 ATGCTAGAGATGATAAATAAAGACGTGTTGAG-GAAGAACTCAAAACTGACCTTG-AAGAAGGAG
23205399 G
569 G
* * **
23205400 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTGATACTGAAGCTACATCTCTTCACCATACGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * * * * * *
23205465 TAAAATGAGGTTTGAAATGGATCGATCTTCTAAAAAAAAAAAAGAACTATCTAAAAAGC-TTCAA
66 TGAAACGAGGCTTGAAATGGATCGATCTTCT-AAAAAAACAAGGAACT-TTTGAAAAGCTTTC-G
* * * *
23205529 TTGATTTACGATCATGACCTTTTACTTACAGGATTTTACGAATCTCACGGTCTGCGAATTTACGA
128 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGAATTTACGA
* * ** * * * * **
23205594 TCATAACTGTCATTTGTAAAGTTTTCTAATTTACATATACAACTTCAATTCATTTATTTATGATC
193 TCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAATC
* * * *
23205659 AT-AAGTACTTAATTAAGAG-TCG-C-A---AC--T----A---CACATAAACAGTTCGTTGATT
258 ATGAA-CACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * * * *
23205708 TATGATCACAACTATCATTTTTAAAGCTCTCTGATTTACAATCACAGCTTCAATTCATTTATTTA
322 TACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTA
* * * * * * * *
23205773 CGATCATGAAAACTTATTGGGTCATAAGGAATGTAAATTTGTTGAACTAGTTTCAAGCGTGGTCA
387 CGATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCA
* * *
23205838 GAGATGATTTTCAACTAGCTAGTTTTGCCCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGACAT
452 GAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGAT
* *
23205903 GATAAATAAATG-CATGTTTAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
517 GATAAATAAA-GACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * *
23205957 ATAGAGGGATCAATTTTTGTTACATTGTCTTTATGAGGCT-AGAGCTATATCTTTTCACCGTCCG
1 ATAGAGGAATCAA-TTTTGTTACATTGTCTTTATGAGGCTGA-AGCTACATCTCTTCACCATACG
* * * * *
23206021 TCTGAAATGAGGCTTAAAATGAATTGAT-TTGCTCAAAAAGACAAGGAACTTTTTGAAAAGC-TT
64 TCTGAAACGAGGCTTGAAATGGATCGATCTT-CT-AAAAAAACAAGGAAC-TTTTGAAAAGCTTT
* * * * * *
23206084 CAGCTGATTTATGATCACGACCTTATACTTACAGGATTATACAAATCTAATGGTCCGC-AGATTT
126 C-GCTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGA-ATTT
* * * * * * * * *
23206148 ACGATCATAACTATCTTTTTTACAGCTTGTTTATTTACATTTACAACTTTAGTTCATTGATTTAC
189 ACGATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTAC
* * * * * ** * *
23206213 AA-CTATGAACACTTCATTAAAAGTCCGCCAATTTACAATTGTGACTTCACTTAAATAGTTTGTT
254 AATC-ATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTT
* * * * *
23206277 GAGTTACGATCACAACTATTATTTTTAAAGTTCACTGATTCACAATCACGGCTTCAGTTCATTGA
318 GATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGA
* * * *
23206342 TTTACGATCATGAACAC-TCTTTGTTTCACAAGGAATGTAAATTTGCTGAACTAGTTCAAAGTGT
383 TTTACGATCATGAACACTTC-TTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGT
* * * * * * * *
23206406 GGCCAGAGATGATTTTCAACTAGCTAACTCTGACTTCTCT-GCCTTTCAAAGTAAATTAAATGCT
447 GGCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTT-AGAGCAAGTTAGATGCT
* *
23206470 AGAGATGATAAATAAAGGCGTGTTGAGGAAGAACTCAAAACT-AGCCTTAAATGAAGGAGG
511 AGAGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGA-CCTTGAA-GAAGGAGG
* * * * * * *
23206530 ATAGAGGAATTAATTTTGTTACATTGTCTTTGTGAGGCTAAAGCTA-TTTTTTTGAACCATACGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTT-CACCATACGT
* ** * * * ** *
23206594 CT-AAACGAGGCTCGAAATTAATCGAT-TTGCTCAAAAAACAAGGAAGTTTCTAAAAAAATTTAG
65 CTGAAACGAGGCTTGAAATGGATCGATCTT-CTAAAAAAACAAGGAACTTT-TGAAAAGCTTTCG
* ** * * * * * * *
23206657 CTGACTTATAATTACGACCTTGTACTTATAGGGTTTTACGAATCTCACGGTCTGCGAGTTTTCGA
128 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGAATTTACGA
* * *
23206722 TCA-ACACTGTCTTTTTTACAA-CAT-GCTGATTTATGT-TCACAACTTTAGTTCATTGATTTAC
193 TCATA-ACTGTCATTTTTA-AAGC-TCGCTGATTTACGTAT-ACAACTTCAGTTCATTGATTTAC
* * * * * * * * * *
23206783 AATCATAAAAACTCCATTAAGAGTTTGTCGATTTATGATTGCAACTCGACTTAAACATTTCGTTG
254 AATCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTG
* * * * * *
23206848 GTTTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTTATTTAT
319 ATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGAT
* * * * * *
23206913 TTATGATCATTAACTCTTCTTGGTTCACAA-GAAATTTAAATTTACTGAACTAGTTTCAAGCGTG
384 TTACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGTG
* * * * * *
23206977 GCCAGAGATGATTTTCAAGTAGCTAATTTTGACCTCTTTGCCCTTCATAGCAAGTTAGATTCTAG
448 GCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAG
*
23207042 AGATGATAAATAAAGACGTGTTGAGGAAGAACTTAAAACTGACCTTGAAAGAAGGAGG
513 AGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * * *
23207100 ATAGAGGGATCAATTTTGTTAAATTGTCTTTATTAGGTTGAAGCTACTTCTCTTCACCATACGAC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * ** *
23207165 TGGAATGAGGATT-AAATGGATCGATCTTCTCAAAAAAATGAGGAACTATTT-AAAAGC-TTCAA
66 TGAAACGAGGCTTGAAATGGATCGATCTTCT-AAAAAAACAAGGAACT-TTTGAAAAGCTTTC-G
* * * * * * * * *
23207227 CTCATTTACGATCACAACCTTCTACTTATAGGATTTTAAGAATCTTACGATCCACAAATTTATGA
128 CTGATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGAATTTACGA
* * * * * *
23207292 TCATATCTGTCATTTGTAAAGCTCACTGATTTACTTATACAACTTTAGTTCATTTATTTACGAA-
193 TCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTAC-AAT
* ** * *
23207356 CATGAACACTTAATTAAGAGTTCTTCGATTTACGATCGCAAGTCCACTTAAACAGTTCGTTGATT
257 CATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * * ** *
23207421 TACGATCACAACTGTCATATTCAAAGCTTACTGATTTACAATCTA--GTTTCAGTTCATTGATTT
322 TACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATC-ACGGCTTCAGTTCATTGATTT
* * * * * * * **
23207484 ATGATCTTGAGCACTTGTTGGTTCACTAGGAATGTAAATTTGCTGAACTAGTTCCAAGCGTTGTT
386 ACGATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCC
* * * * * * *
23207549 AGAGATGATTTTCAACTAGCTAATTCTGAACTTTTTGCCC-TT----CAAGTTAGATTCTAGAAA
451 AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGA
* * * *
23207609 TGATAAATAAATATGTGTTGAGGAAGAACTCAAAATTGACCTTGAAAAAAGGAGG
516 TGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * * *
23207664 ATAGAGGAATCAATTTTGTTAAAATTATCTTTATTAGGCTGAAGCTACTTCTCTTCACCATCCAT
1 ATAGAGGAATCAATTTTGTT-ACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGT
* * *
23207729 -TTAAACAAGGCTTGAAATGGATCGATCTACTAAAAAAA
65 CTGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAAA
23207767 AATAAACTTT
Statistics
Matches: 3781, Mismatches: 731, Indels: 272
0.79 0.15 0.06
Matches are distributed among these distances:
555 80 0.02
556 34 0.01
557 121 0.03
558 211 0.06
559 5 0.00
560 1 0.00
561 1 0.00
562 1 0.00
563 3 0.00
564 116 0.03
565 267 0.07
566 196 0.05
567 13 0.00
568 371 0.10
569 136 0.04
570 1081 0.29
571 366 0.10
572 167 0.04
573 326 0.09
574 276 0.07
575 8 0.00
576 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (569 bp):
ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
TGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAAACAAGGAACTTTTGAAAAGCTTTCGCTG
ATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCGCGAATTTACGATCA
TAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAATCATG
AACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTACG
ATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTACGAT
CATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGAGA
TGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGATGATA
AATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAGAAGGAGG
Found at i:23210582 original size:21 final size:20
Alignment explanation
Indices: 23210556--23210604 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
23210546 TACAGCATGA
*
23210556 GCGTGTGCTATGGCCACACAG
1 GCGTGTGCT-TGACCACACAG
*
23210577 GCGTGTCCCTTGACCACACAG
1 GCGTGT-GCTTGACCACACAG
*
23210598 GTGTGTG
1 GCGTGTG
23210605 TGCCCTGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (20 bp):
GCGTGTGCTTGACCACACAG
Found at i:23217031 original size:2 final size:2
Alignment explanation
Indices: 23217019--23217061 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
23217009 ACATATTTTG
*
23217019 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23217061 A
1 A
23217062 AGAGGCAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23219485 original size:134 final size:134
Alignment explanation
Indices: 23219235--23219497 Score: 355
Period size: 134 Copynumber: 2.0 Consensus size: 134
23219225 TTTATGATCA
* * ** *
23219235 TGAACACTTCATTAAGAGTTCATTGATTTACAATTGTGACTCCACTTAAACAATTCAATTATTTA
1 TGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATTTA
* * * * *
23219300 CAATCACAACTGTCATTTTTAAAGCTCACTGAATTACAATCATAGCTTCAATTGATTGATTTACA
66 CAATCACAACTATCATTTTTAAAGCTCACTGAATTACAATCACAGCGTCAATTAATTGAATTACA
23219365 ATCT
131 ATCT
* * * *
23219369 TGAACACTTCATTAAGAGTTCGTCGATTTACAATCGCAACTCTACTTAAACAATTTACTGATTTA
1 TGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATTTA
** ** *
23219434 TGATCACAACTATCATTTTTAAAGCTGGCTGAATTACAATCACGGCGTCAATTAATTGAATTAC
66 CAATCACAACTATCATTTTTAAAGCTCACTGAATTACAATCACAGCGTCAATTAATTGAATTAC
23219498 GATTATGAAT
Statistics
Matches: 110, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
134 110 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (134 bp):
TGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATTTA
CAATCACAACTATCATTTTTAAAGCTCACTGAATTACAATCACAGCGTCAATTAATTGAATTACA
ATCT
Found at i:23221274 original size:47 final size:47
Alignment explanation
Indices: 23221220--23221313 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
23221210 GAAAAGTGTC
*
23221220 AGCTAATTTACGATTATGACATTTTACTTACAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
* *
23221267 AGCTAATTTACGATCATGACCTTTTACTTATAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
23221314 CACAATCTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (47 bp):
AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
Found at i:23221884 original size:618 final size:617
Alignment explanation
Indices: 23220701--23221884 Score: 1447
Period size: 618 Copynumber: 1.9 Consensus size: 617
23220691 AATATCACGG
* *
23220701 TCTGCTAATTTACGATCACAACTGTTATTTTTAAAGCACACTGATTTAGGATCACAGATTCAGTT
1 TCTGCTAATTTACGATCACAACTGTTATTTTTAAAACACACTGATTTACGATCACAGATTCAGTT
* * **
23220766 CATTAATTTATGATCATGAACACTTCATTAAGAGTTCACAGGTTTACAATCGTAACTCCACTTAA
66 CATTAATTTAGGATCATGAACACTTCATTAAGAGTTCACAGATTTACAATCACAACTCCACTTAA
* * * * * * *
23220831 ATAGTTCACTAATTTACGATCACAACTGTCATTTTTAAAGTTCTTTATTTTACAATCATGGCTTC
131 ACAATTCACTAATTTACGATCACAACTGTCATTTTTAAAGCTCCTGATTTTACAATCACGACTTC
* * *
23220896 AGAAAATTGATTTAAGATCATGAACGATTCTTTGTTCACAAGCAATGTAAATTTCCTAAACCAGT
196 AGAAAATTGATTTAAGATCATGAACGATTCTTGGTTCACAAGCAACGTAAATTTCCTAAACCAAT
* * * *
23220961 TCTAAGCATAGCCAAAGTTGTTTTCAAATAGTTAATTTTGACCTATCTGCACTTCAGAACAAGTT
261 TCCAAGCATAGCCAAAGATGTTTTCAAATAGCTAATTCTGACCTATCTGCACTTCAGAACAAG-T
* * *
23221026 TGATATCACAGATGATGAATATAGATGTGTTGAGGAAGAACTCAAAACTAATCTTAAAAGAAGAA
325 TGAAATCACAGATGATGAATATAGACGTGTTGAGGAAGAACTCAAAACTAACCTTAAAAGAAGAA
* * * *
23221091 GGATAGAGGGATCAATTTTGTTATATTGTCTCTGTGAGGCTGAAGCTACTTCTCTTAACTGCACG
390 GGATAGAGGAATCAATTTTGTTACATTGTCTCTGTAAGGCTAAAGCTACTTCTCTTAACTGCACG
* *
23221156 TTTGAAATGAGGCTTGAAACGGATCGATTTGCCAAAAAAAGAAAGGAACTTTCTGAAAAGTGTCA
455 TTTGAAATGAGGCTTGAAACGGATCGATCTGCCAAAAAAAGAAAGGAACTTTCTGAAAAGTGTAA
* * *
23221221 GCTAATTTACGATTATGACATTTTACTTACAGGATTTTACGAATCTAGCTAATTTACGATCATGA
520 GCTAATTTACGATTACGACATTCTACTTACAAGATTTTACGAATCTAGCTAATTTACGATCATGA
23221286 CCTTTTACTTATAGGATTTTACGAATCTCACAA
585 CCTTTTACTTATAGGATTTTACGAATCTCACAA
* * * * * * *
23221319 TCTGCTGATTTACGATCATAACTGTCT-TTTTTAAAACTCATTGATTTACGATTATAGCTTCAGT
1 TCTGCTAATTTACGATCACAACTGT-TATTTTTAAAACACACTGATTTACGATCACAGATTCAGT
* ** *
23221383 TCATTGATTTAGGATCATGAACACTTCATTAAGAGTTCATCA-ATTTATGATCACAACTGCACTT
65 TCATTAATTTAGGATCATGAACACTTCATTAAGAGTTCA-CAGATTTACAATCACAACTCCACTT
** * * * * *
23221447 AAACAATTTGCTGATTTATGATTAGAATTGTCATTTTTAAAGCTCGCTGA-TTTACAATCACGAC
129 AAACAATTCACTAATTTACGATCACAACTGTCATTTTTAAAGCTC-CTGATTTTACAATCACGAC
* ** * * *
23221511 TTCGGTTAATTGATTTACGATCATGAAC-ATTTCTTGGTTCACAAGCAACGTAAATTTGCTGAAC
193 TTCAGAAAATTGATTTAAGATCATGAACGA-TTCTTGGTTCACAAGCAACGTAAATTTCCTAAAC
* * * * * * *
23221575 TAATTCCAAGCATGGCTAGAGATGATTTTCAACA-AGCTAATTCTGGCCTTTTTGC-CTTTCAGA
257 CAATTCCAAGCATAGCCAAAGATG-TTTTCAA-ATAGCTAATTCTGACCTATCTGCAC-TTCAGA
* * * * * *
23221638 GCAAG-TGAAATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTCT
319 ACAAGTTGAAAT-C-ACAGATGATGAATATAGACGTGTTGAGGAAGAACTCAAAA-CTAACCT-T
* *
23221702 AAAA-AAGGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCT
380 AAAAGAAGAAGGATAGAGGAATCAATTTTGTTACATTGTCTCTGTAAGGCTAAAGCTACTTCTCT
* * * *
23221766 TAACTGCATGTTTGAAATGAGGCTTGAAATGGAGT-GATCTG-CTAAAAAA-AAAGGAACTTTTT
445 TAACTGCACGTTTGAAATGAGGCTTGAAACGGA-TCGATCTGCCAAAAAAAGAAAGGAACTTTCT
* * * *
23221828 GAAAAGCT-TAAGTTGATTTATGATTACGACCTTCTACTTACAAGATTTTACGAATCT
509 GAAAAG-TGTAAGCTAATTTACGATTACGACATTCTACTTACAAGATTTTACGAATCT
23221885 CACAGTCCCT
Statistics
Matches: 474, Mismatches: 79, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
617 6 0.01
618 285 0.60
619 82 0.17
620 95 0.20
621 6 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (617 bp):
TCTGCTAATTTACGATCACAACTGTTATTTTTAAAACACACTGATTTACGATCACAGATTCAGTT
CATTAATTTAGGATCATGAACACTTCATTAAGAGTTCACAGATTTACAATCACAACTCCACTTAA
ACAATTCACTAATTTACGATCACAACTGTCATTTTTAAAGCTCCTGATTTTACAATCACGACTTC
AGAAAATTGATTTAAGATCATGAACGATTCTTGGTTCACAAGCAACGTAAATTTCCTAAACCAAT
TCCAAGCATAGCCAAAGATGTTTTCAAATAGCTAATTCTGACCTATCTGCACTTCAGAACAAGTT
GAAATCACAGATGATGAATATAGACGTGTTGAGGAAGAACTCAAAACTAACCTTAAAAGAAGAAG
GATAGAGGAATCAATTTTGTTACATTGTCTCTGTAAGGCTAAAGCTACTTCTCTTAACTGCACGT
TTGAAATGAGGCTTGAAACGGATCGATCTGCCAAAAAAAGAAAGGAACTTTCTGAAAAGTGTAAG
CTAATTTACGATTACGACATTCTACTTACAAGATTTTACGAATCTAGCTAATTTACGATCATGAC
CTTTTACTTATAGGATTTTACGAATCTCACAA
Found at i:23222442 original size:543 final size:543
Alignment explanation
Indices: 23221390--23222480 Score: 1627
Period size: 543 Copynumber: 2.0 Consensus size: 543
23221380 AGTTCATTGA
* * * * * *
23221390 TTTAGGATCATGAACACTTCATTAAGAGTTCATCAATTTATGATCACAACTGCACTTAAACAATT
1 TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTACGATCACAACTGCACTTAAACAATT
** * * * * * *
23221455 TGCTGATTTATGATTAGAATTGTCATTTTTAAAGCTCGCTGATTTACAATCACGACTTCGGTTAA
66 CACTGATTTATGATCACAACTGTCATTTTTAAAGCTCGCTGATATACAAACACGACTTCAGTTAA
* * * *
23221520 TTGATTTACGATCATGAACATTTCTTGGTTCACAAGCAACGTAAATTTGCTGAACTAATTCCAAG
131 TTGATTTACCATCATGAAAACTTCTTGGTTCAAAAGCAACGTAAATTTGCTGAACTAATTCCAAG
* * *
23221585 CATGGCTAGAGATGATTTTCAACAAGCTAATTCTGGCCTTTTTGCCTTTCAGAGCAAGTGAAATG
196 CATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTTCTGCCTTTCAGAGCAAGTGAAATG
23221650 CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTCTAAAAAAGGAGGAT
261 CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTCTAAAAAAGGAGGAT
*
23221715 AGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTGCATGTTTG
326 AGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATGTTTG
* *
23221780 AAATGAGGCTTGAAATGGAGTGATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGTTGAT
391 AAATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGCTGAT
*
23221845 TTATGATTACGACCTTCTACTTACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAA
456 TTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAA
*
23221910 CTATAATTTTTAAAGCTCGCTGC
521 CTATAATTTTTAAAGCTCGCTAC
* * * * *
23221933 TTTACGATCATGAACCCTTAAGTAAAAGTTCGCCAATTTACGATCGCTACTTCACTTAAACAATT
1 TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTACGATCACAACTGCACTTAAACAATT
*
23221998 CATTGATTTACT-ATCACAACTGTCATTTTTAAAGC-CTGCTGATATA-AAACGACGACTTCAGT
66 CACTGATTTA-TGATCACAACTGTCATTTTTAAAGCTC-GCTGATATACAAAC-ACGACTTCAGT
* * *
23222060 TAATTGATTTACCATTC-TGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTC
128 TAATTGATTTACCA-TCATGAAAACTTCTTGGTTCAAAAGCAACGTAAATTTGCTGAACTAATTC
** * *
23222124 CAAGCATGGCTAGAGACGATTTTCAACTTGCTAATTCTAGCCTTTCTGCCTTTTAGAGCAAGTTA
192 CAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTTCTGCCTTTCAGAGCAAGTGA
* * * *
23222189 GATGCTAGAGATGATGAATTTAGATGTGTTGAGGAAGAACTTAAAA-TTGACCTTTAAAGAAGGA
257 AATGCTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTCTAAAAAAGGA
* *
23222253 GGATAGAGGAATCAATTTTGTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAACTACATG
322 GGATAGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATG
* *
23222318 TTTGAAATGAGGCTTGAAATGGA-TCAATCTTCTAAAAAAAAAGGAACTTTTTGAAAAGTTTAAG
387 TTTGAAATGAGGCTTGAAATGGAGT-AATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAG
* * *
23222382 CTGATTTATGATCACGACTTTCTACTTACAAGATTTTACGAATCTCACGGTTCGCTAATTTACGA
451 CTGATTTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACAG-TCCCTAATTTACGA
*
23222447 TCACAACTATAATTTTTAAAGCTTGCTAC
515 TCACAACTATAATTTTTAAAGCTCGCTAC
23222476 TTTAC
1 TTTAC
23222481 TACCATATCT
Statistics
Matches: 491, Mismatches: 51, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
541 1 0.00
542 187 0.38
543 300 0.61
544 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (543 bp):
TTTACGATCATGAACACTTAAGTAAAAGTTCACCAATTTACGATCACAACTGCACTTAAACAATT
CACTGATTTATGATCACAACTGTCATTTTTAAAGCTCGCTGATATACAAACACGACTTCAGTTAA
TTGATTTACCATCATGAAAACTTCTTGGTTCAAAAGCAACGTAAATTTGCTGAACTAATTCCAAG
CATGGCTAGAGACGATTTTCAACAAGCTAATTCTAGCCTTTCTGCCTTTCAGAGCAAGTGAAATG
CTAGAGATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAATTTGACCTCTAAAAAAGGAGGAT
AGAGGAATCAATTTTGTTACATTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATGTTTG
AAATGAGGCTTGAAATGGAGTAATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGCTGAT
TTATGATCACGACCTTCTACTTACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAA
CTATAATTTTTAAAGCTCGCTAC
Found at i:23222613 original size:543 final size:547
Alignment explanation
Indices: 23221541--23222872 Score: 1520
Period size: 570 Copynumber: 2.4 Consensus size: 547
23221531 TCATGAACAT
* * * * *
23221541 TTCTTGGTTCACAAGCAACGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGATGATTTTCA
1 TTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGACGATTTTCA
* * *
23221606 ACAAGCTAATTCTGGCCTTTTTGCCTTTCAGAGCAAGTGAAATGCTAGAGATGATGAATTTAGAC
66 ACAAGCTAATTCTGGCCTTTCTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATTTAGAC
* *
23221671 GTGTTGAGGAAGAACTTAAAATTTGACCTCTAAAAAAGGAGGATAGAGGAATCAATTTTGTTACA
131 GTGTTGAGGAAGAACTTAAAA-TTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTTACA
*
23221736 TTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTGCATGTTTGAAATGAGGCTTGAAATGGAGT
195 TTGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATGTTTGAAATGAGGCTTGAAATGGAGT
* * *
23221801 GATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGTTGATTTATGATTACGACCTTCTACT
260 AATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGCTGATTTATGATCACGACCTTCTACT
23221866 TACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAACTATAATTTTTAAAGCTCGCT
325 TACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAACTATAATTTTTAAAGCTCGCT
* * *
23221931 GCTTTACGATCATGAACCCTTAAGTAAAAGTTCGCCAATTTACGATCGCTACTTCACTTAAACAA
390 ACTTTACGACCAT-AACCCTTAAGTAAAAGTTCG-C-ATTTACGATCGCTACTTCAATTAAACAA
* * ** *
23221996 TTCATTGATTTACTATCACAACTGTCATTTTTAAAGCCTGCTGATATAAAACGACGACTTCAGTT
452 TTCATCGATTTACTATCACAACTGTCACTTAAAAAGCCTGCTGATATAAAACGACAACTTCAGTT
*
23222061 AATTGA-TT-T-AC-C-A-T-T-CTGAAAAC
517 AACTGATTTATGACTCTATTGTCCTGAAAAC
23222084 TTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGACGATTTTCA
1 TTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGACGATTTTCA
** * * *
23222149 ACTTGCTAATTCTAGCCTTTCTGCCTTTTAGAGCAAGTTAGATGCTAGAGATGATGAATTTAGAT
66 ACAAGCTAATTCTGGCCTTTCTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATTTAGAC
*
23222214 GTGTTGAGGAAGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTTGCAT
131 GTGTTGAGGAAGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTTACAT
*
23222279 TGTCTTTGTAAGGCTGAAGCTACTTCTCTTAACTACATGTTTGAAATGAGGCTTGAAATGGA-TC
196 TGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATGTTTGAAATGAGGCTTGAAATGGAGT-
* * *
23222343 AATCTTCTAAAAAAAAAGGAACTTTTTGAAAAGTTTAAGCTGATTTATGATCACGACTTTCTACT
260 AATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGCTGATTTATGATCACGACCTTCTACT
* * *
23222408 TACAAGATTTTACGAATCTCACGGTTCGCTAATTTACGATCACAACTATAATTTTTAAAGCTTGC
325 TACAAGATTTTACGAATCTCACAG-TCCCTAATTTACGATCACAACTATAATTTTTAAAGCTCGC
* * * ** *
23222473 TACTTTACTACCAT-A-TCTTCAGT-TCA-TT-G-ATTTACGATCATG-TACCCTT-AATT-AAG
389 TACTTTACGACCATAACCCTTAAGTAAAAGTTCGCATTTACGATC--GCTA--CTTCAATTAAAC
* ** ** * ** * * * * * *
23222529 AGTTTGTCGATTTA-TAATTGCTACT-TCACTTAAACAATTCT-TTTATTTACGATC-ACAATTG
450 AATTCATCGATTTACT-ATCACAACTGTCACTTAAA-AAGCCTGCTGATATA-AAACGACAACT-
*
23222590 TCATTTTTAAAGCCCGCTGATTTAAAATGACGACTTCAGTTAATTGATTTGCGATCCTGAAAAC
511 TCA--GTT-AA-----CTGATTT---AT---GAC-TC-------T-A-TT--G-TCCTGAAAAC
* * *
23222654 TTCTTGTTTCAAAAGGAATTTAAATTTGTTGAACTAATTCCAAGCATGGCTAGAGACGATTTTTA
1 TTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGACGATTTTCA
* * * *
23222719 ACAAGCTAATTCTGGCCTCTCTGCATTTCAGAGCAAGTTAGATGCTAGTGATGATAAATTTAGAC
66 ACAAGCTAATTCTGGCCTTTCTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATTTAGAC
* * *
23222784 GTATTGAGGAGGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTAACAT
131 GTGTTGAGGAAGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTTACAT
* *
23222849 TGTCTTTGTAAGGTTAAAGTTACT
196 TGTCTTTGTAAGGCTAAAGCTACT
23222873 GTTTTCATCA
Statistics
Matches: 668, Mismatches: 76, Indels: 63
0.83 0.09 0.08
Matches are distributed among these distances:
534 26 0.04
535 29 0.04
536 4 0.01
537 6 0.01
538 4 0.01
539 1 0.00
540 6 0.01
541 2 0.00
542 183 0.27
543 190 0.28
544 2 0.00
548 1 0.00
552 2 0.00
554 1 0.00
563 1 0.00
565 1 0.00
569 1 0.00
570 208 0.31
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (547 bp):
TTCTTGTTTCAAAAGGAATGTAAATTTGCTGAACTAATTCCAAGCATGGCTAGAGACGATTTTCA
ACAAGCTAATTCTGGCCTTTCTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATTTAGAC
GTGTTGAGGAAGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAGGAATCAATTTTGTTACAT
TGTCTTTGTAAGGCTAAAGCTACTTCTCTTAACTACATGTTTGAAATGAGGCTTGAAATGGAGTA
ATCTGCTAAAAAAAAAGGAACTTTTTGAAAAGCTTAAGCTGATTTATGATCACGACCTTCTACTT
ACAAGATTTTACGAATCTCACAGTCCCTAATTTACGATCACAACTATAATTTTTAAAGCTCGCTA
CTTTACGACCATAACCCTTAAGTAAAAGTTCGCATTTACGATCGCTACTTCAATTAAACAATTCA
TCGATTTACTATCACAACTGTCACTTAAAAAGCCTGCTGATATAAAACGACAACTTCAGTTAACT
GATTTATGACTCTATTGTCCTGAAAAC
Found at i:23223090 original size:263 final size:263
Alignment explanation
Indices: 23222621--23223104 Score: 614
Period size: 263 Copynumber: 1.8 Consensus size: 263
23222611 TTAAAATGAC
* * * *
23222621 GACTTCAGTTAATTGATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTTGA
1 GACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCTGA
* * *
23222686 ACTAATTCCAAGCATGGCTAGAGACGATTTTTAACAAGCTAATTCTGGCCTCTCTGCATTTCAGA
66 ACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCAGA
* * * * * * * * *
23222751 GCAAGTTAGATGCTAGTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTTAA
131 GCAAGCTAGATGCTAGAGATCATAAATATAGACGTATTGAGAAAGAACTTAAAACTAACCTTGAA
*
23222816 AGAAGGAGGATAGAGGAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCAT
196 AGAAGGAGGATAAAGGAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCAT
23222881 CAT
261 CAT
** * *
23222884 GACTTCAGTTAATTGATTTATTATCATGAACACTTCTTAG-ATCACAAGGAATTTAAATTTGCTG
1 GACTTCAGTTAATTGATTTACGATCATGAAAACTTCTT-GTATCAAAAGGAATTTAAATTTGCTG
* * * * * * *
23222948 AACTAGTACCAAGCGTGGCTAGATATGATTTTCAACTAGCTAATTTTGACCTCTCTGCCCTTT-A
65 AACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTG-CATTTCA
* * * *
23223012 GAGTAAGCTAGATGCTAGAGATCATGAATATAGGCGTGTTGAGAAAGAA-TTCAAAACTAACCTT
129 GAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATTGAGAAAGAACTT-AAAACTAACCTT
* *
23223076 GAAATAATGAGGATAAAGGAATCAATTTT
193 GAAAGAAGGAGGATAAAGGAATCAATTTT
23223105 CTTTCGTTGT
Statistics
Matches: 184, Mismatches: 34, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
262 2 0.01
263 177 0.96
264 5 0.03
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (263 bp):
GACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCTGA
ACTAATACCAAGCATGGCTAGAGACGATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCAGA
GCAAGCTAGATGCTAGAGATCATAAATATAGACGTATTGAGAAAGAACTTAAAACTAACCTTGAA
AGAAGGAGGATAAAGGAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCAT
CAT
Found at i:23223665 original size:833 final size:831
Alignment explanation
Indices: 23222051--23223673 Score: 1908
Period size: 833 Copynumber: 1.9 Consensus size: 831
23222041 ATAAAACGAC
*
23222051 GACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTTTCAAAAGGAATGTAAATTTGCTGA
1 GACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTATCAAAAGGAATGTAAATTTGCTGA
* * * *
23222116 ACTAATTCCAAGCATGGCTAGAGACGATTTTCAACTTGCTAATTCTAGCCTTTCTGCCTTTTAGA
66 ACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAGCCTCTCTGCCCTTTAGA
* * * * * * * *
23222181 GCAAGTTAGATGCTAGAGATGATGAATTTAGATGTGTTGAGGAAGAACTTAAAATTGACCTTTAA
131 GCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTTGAGAAAGAACTTAAAACTAACCTTGAA
* *
23222246 AGAAGGAGGATAGAGGAATCAATTTTGTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAA
196 AGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAA
* * ** * **
23222311 CTACATGTTTGAAATGAGGCTTGAAATGGATCAATCTTCTAAAAAAAAAGGAACTTTTTGAAAAG
261 CTACATGTCTGAAACGAGGCTTGAAATGGATCAATCTTAAAAAAAAAAAAGAACTTACTGAAAAG
* * ** *
23222376 TTTAAGCTGATTTATGATCACGACTTTCTACTTACAAGATTTTACGAATCTCACGGTTCGCTAAT
326 ATTAAGCTCATTTACAATCACGAC--TCTACTTACAAGATTTTACGAATCTCACGATTCGCTAAT
* * * *
23222441 TTACGATCACAACTATAATTTTTAAAGCTTGCTACTTTACTACCATATCTTCAGTTCATTGATTT
389 TTACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTACCATATCTTCAATTCATTGATTT
* * * *** ** *
23222506 ACGATCATGTACCCTTAATTAAGAGTTTGTCGATTTATAATTGCTACTTCACTTAAACAATTCTT
454 ACGATAATGAACACTTAATTAAGAGTTCACCGATTTATAATCACAACTTCACTTAAACAATTCTT
** * * *
23222571 TTATTTACGATCACAATTGTCATTTTTAAAGCCCGCTGATTTAAAATGACGACTTCAGTTAATTG
519 AGATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGACTTCAGTTAATTG
* * * * * *
23222636 ATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTTGAACTAATTCCAAGCAT
584 ATTTACGATCATAAAAACTTCTTGTTTCAAAAGAAATGTAAATTTGCTGAACTAATTCCAAGCAT
* * * * * *
23222701 GGCTAGAGACGATTTTTAACAAGCTAATTCTGGCCTCTCTGCATTTCAGAGCAAGTTAGATGCTA
649 GGCCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTGCATTTCAGAGCAAGTTAAATGCCA
* * * * * *
23222766 GTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTTAAAGAAGGAGGATAGAG
714 GAGATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAAAGAAGGAGGATAGAG
23222831 GAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATCAT
779 GAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATCAT
** * * *
23222884 GACTTCAGTTAATTGATTTATTA-TCATGAACACTTCTTAG-ATCACAAGGAATTTAAATTTGCT
1 GACTTCAGTTAATTGATTTACCATTC-TGAAAACTTCTT-GTATCAAAAGGAATGTAAATTTGCT
* * * * *
23222947 GAACTAGTACCAAGCGTGGCTAGATATGATTTTCAACTAGCTAATT-TTGACCTCTCTGCCCTTT
64 GAACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAG-CCTCTCTGCCCTTT
* *
23223011 AGAGTAAGCTAGATGCTAGAGATCATGAATATAGGCGTGTTGAGAAAGAA-TTCAAAACTAACCT
128 AGAGCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTTGAGAAAGAACTT-AAAACTAACCT
* * * * * *
23223075 TGAAATAATGAGGATAAAGGAATCAATTTTCTTTCGTTGTCTTTGTGAGGCTGAAGCTATTTCTC
192 TGAAAGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTC
* * *
23223140 TTCACTATATGTCTGAAACGAGGCTTGAAATGGATCGATCTTAAAAAAAAAAAACAAAGAACTTA
257 TTAACTACATGTCTGAAACGAGGCTTGAAATGGATCAATCTT---AAAAAAAAA-AAAGAACTTA
* * * *
23223205 CTGAAGAGATTCAGCTCATTTACAATCACGAC-CTAGTTATAAGATTTTACGAATCTCA-GA-TC
318 CTGAAAAGATTAAGCTCATTTACAATCACGACTCTACTTACAAGATTTTACGAATCTCACGATTC
* * * * *
23223267 TGCTGATTTATGATCACAACTATCATTTTTAAAACTCGCTAATTTAC-AGTCACTGT-TTCAATT
383 -GCTAATTTACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTA-CCA-TATCTTCAATT
*
23223330 CATTGATTTACGATAATGAACACTTCATTAAGAGTTCACCGATTTA-AGATCACAAC-TCTACTT
445 CATTGATTTACGATAATGAACACTTAATTAAGAGTTCACCGATTTATA-ATCACAACTTC-ACTT
* * * * * * *
23223393 AAACAGTT-TGTAGATTTACGACCATAACTGTCATTTTTAAAGCTCGTTTATTTACAATCACGTC
508 AAACAATTCT-TAGATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGAC
* * ** **
23223457 TTCAGTTAATTGATTTACTATCATAAAAACTTCTT-TTCTCACAAGAAATGTACTTTTGCTGGCC
572 TTCAGTTAATTGATTTACGATCATAAAAACTTCTTGTT-TCAAAAGAAATGTAAATTTGCTGAAC
* * * * * *
23223521 TATTTCCAAGCGTGGCCAGAGATGATTTTCAACTAGCTAAGTCTGACCTCTCTGTCCTTT-TGAG
636 TAATTCCAAGCATGGCCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTG-CATTTCAGAG
* * * *
23223585 CAAGTTAAATGCCAGAGATGATGAATATAGGCGTGTTGAGAACGAACTTAAAACTGAGCTTGAAA
700 CAAGTTAAATGCCAGAGATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAAA
*
23223650 GATGGAGCG-TAGAGGAATCAATTT
765 GAAGGAG-GATAGAGGAATCAATTT
23223674 GTTTTAGTGT
Statistics
Matches: 655, Mismatches: 118, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
832 15 0.02
833 568 0.87
834 32 0.05
836 7 0.01
837 33 0.05
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (831 bp):
GACTTCAGTTAATTGATTTACCATTCTGAAAACTTCTTGTATCAAAAGGAATGTAAATTTGCTGA
ACTAATACCAAGCATGGCTAGAGACGATTTTCAACTAGCTAATTCTAGCCTCTCTGCCCTTTAGA
GCAAGCTAGATGCTAGAGATCATGAATATAGACGTGTTGAGAAAGAACTTAAAACTAACCTTGAA
AGAAGGAGGATAAAGGAATCAATTTTCTTGCATTGTCTTTGTAAGGCTGAAGCTACTTCTCTTAA
CTACATGTCTGAAACGAGGCTTGAAATGGATCAATCTTAAAAAAAAAAAAGAACTTACTGAAAAG
ATTAAGCTCATTTACAATCACGACTCTACTTACAAGATTTTACGAATCTCACGATTCGCTAATTT
ACGATCACAACTATAATTTTTAAAACTCGCTAATTTACTACCATATCTTCAATTCATTGATTTAC
GATAATGAACACTTAATTAAGAGTTCACCGATTTATAATCACAACTTCACTTAAACAATTCTTAG
ATTTACGACCACAACTGTCATTTTTAAAGCCCGCTGATTTAAAATCACGACTTCAGTTAATTGAT
TTACGATCATAAAAACTTCTTGTTTCAAAAGAAATGTAAATTTGCTGAACTAATTCCAAGCATGG
CCAGAGACGATTTTCAACAAGCTAAGTCTGACCTCTCTGCATTTCAGAGCAAGTTAAATGCCAGA
GATGATAAATATAGACGTATTGAGAACGAACTTAAAACTGACCTTGAAAGAAGGAGGATAGAGGA
ATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTCATCAT
Found at i:23224870 original size:39 final size:39
Alignment explanation
Indices: 23224824--23224902 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
23224814 CATTAGAAGT
23224824 TCATCGATTTATGGTTGCAACTCCACATGAACAGTTCGC
1 TCATCGATTTATGGTTGCAACTCCACATGAACAGTTCGC
23224863 TCATCGATTTATGGTTGCAACTCCACATGAACAGTTCGC
1 TCATCGATTTATGGTTGCAACTCCACATGAACAGTTCGC
23224902 T
1 T
23224903 AAATTACGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (39 bp):
TCATCGATTTATGGTTGCAACTCCACATGAACAGTTCGC
Found at i:23227321 original size:40 final size:39
Alignment explanation
Indices: 23227238--23227404 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 39
23227228 TTGAATGATG
* * * * *
23227238 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
23227278 TCCGGACTAAGATCCAAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
23227318 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
23227357 CCCGGGTTAATTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
23227398 -CCGGGCT
1 TCCGGGCT
23227405 TTATCCCGAA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 32 0.30
40 64 0.61
41 9 0.09
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:23227412 original size:40 final size:40
Alignment explanation
Indices: 23227294--23227429 Score: 170
Period size: 40 Copynumber: 3.4 Consensus size: 40
23227284 CTAAGATCCA
* * *
23227294 AAGGCATTCGTGCGAGTTAATAAATCCGGGC-TAAGCCCG
1 AAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAATCCCG
*
23227333 AAGGCATTTGTGCGAGTTACTAAACCCGGG-TTAATTCCCG
1 AAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAA-TCCCG
*
23227373 AAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTATCCCG
1 AAGGCATTCGTGCGAGTTACTA-AACCCGGGCTTAATCCCG
* *
23227413 AAGGCATTTGAGCGAGT
1 AAGGCATTCGTGCGAGT
23227430 CGTTATATCC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 30 0.35
40 50 0.59
41 5 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAATCCCG
Found at i:23236165 original size:40 final size:39
Alignment explanation
Indices: 23236082--23236273 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
23236072 TTGAATGATG
* * * * *
23236082 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
23236122 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
23236162 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
23236201 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
23236242 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
23236274 CGTTATATCC
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:23236222 original size:79 final size:81
Alignment explanation
Indices: 23236082--23236273 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 81
23236072 TTGAATGATG
* * *
23236082 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
23236146 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
23236162 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
23236225 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
23236242 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
23236274 CGTTATATCC
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:23236288 original size:79 final size:78
Alignment explanation
Indices: 23236082--23236298 Score: 217
Period size: 79 Copynumber: 2.7 Consensus size: 78
23236072 TTGAATGATG
* * * *
23236082 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAGATCCGAAGGCATT
23236146 CGTGCGAGTTAATAAA
63 CGTGCGAGTTAATAAA
* * * *
23236162 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGAT-CCGAAGGCATTC
*
23236226 GTGCGAGTTACTATAA
64 GTGCGAGTTAATA-AA
** ** *
23236242 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAA-ATTCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGATCCGAAGG
23236299 TACGTGATTC
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
78 7 0.06
79 62 0.53
80 47 0.41
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGATCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:23239612 original size:287 final size:288
Alignment explanation
Indices: 23239062--23239631 Score: 788
Period size: 287 Copynumber: 2.0 Consensus size: 288
23239052 TATGAGGTTT
23239062 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
1 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
* * * * * * * *
23239127 CGAGTAACTTTCTGAAAAGCTTCAGTGAAATTACAATCATGACCTTATACTTATAGGATTTTATG
66 CAAGGAACTTCCTAAAAAGCTTCAGAGAAATTACAATCACGACATTATACTTACAGGATTTTATG
* * ** *
23239192 AATCTCACGGTCCGCTAATTTATGATCACAATTCTCTTTTTTGAGGCTCACTGATTTACGATCAT
131 AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
* * *
23239257 GAACATTTCGTTAAGAGTTTCCCAATTTTTTATTTATGATCGCAACTTCACCTAATCAGTTCGTT
196 GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCTAATCAGTTCGTT
23239322 GATTTACTATCACAACTTCAGTTTGCTG
261 GATTTACTATCACAACTTCAGTTTGCTG
** * * *
23239350 AAGCTACTTCTCTTAATTGTATG-TTTGAAATGAGAC-TATAAATGGTCTAATCTGCTAAAAGAA
1 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACAT-TAAATGGTCCAATCTG-GAAAAAAA
* *
23239413 A-CAAGGAACTTCCTAAAAAGCTTCAGCAG-AATTGCAATCACGACATTCTACTTACAGGATTTT
64 ACCAAGGAACTTCCTAAAAAGCTTCAG-AGAAATTACAATCACGACATTATACTTACAGGATTTT
* * * *
23239476 ATGAATCTCACGGTCCACTAATTTACGATCATAATTGTAATATTTGATGCTCGCTGATTTACGAT
128 ATGAATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGAT
* ** * * *
23239541 CATGAACACTTCATTAAGGGTTTCTTAATTTTTCATTTATGATCGCAACTTCACTTAATTAGTTT
193 CATGAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCTAATCAGTTC
23239606 GTTGATTTACTATCACAACTTCAGTT
258 GTTGATTTACTATCACAACTTCAGTT
23239632 CATTAATTTA
Statistics
Matches: 246, Mismatches: 33, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
286 1 0.00
287 214 0.87
288 31 0.13
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (288 bp):
AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
CAAGGAACTTCCTAAAAAGCTTCAGAGAAATTACAATCACGACATTATACTTACAGGATTTTATG
AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCTAATCAGTTCGTT
GATTTACTATCACAACTTCAGTTTGCTG
Found at i:23245598 original size:536 final size:541
Alignment explanation
Indices: 23244384--23245804 Score: 1645
Period size: 536 Copynumber: 2.6 Consensus size: 541
23244374 TCAGTTAATT
* * * * * * ** **
23244384 GATTTATGATCATGAACAATTCCTTGTTCAAAAGGAATGTAAATTTACTGAGCTAGTTCTATTCA
1 GATTTAAGATCATGAACTATTCTTTGTTCACAATGAATGTAAATTT-CTAAAATAGTTCTAAGCA
* * * * * * *
23244449 TGGCAAGAGATGATTTCCAACTAGCTTATTTTAACCCCTTTACCTTTCAGAG-AAAGTTAAATGC
65 TGGCAAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTCAGAGCAAAG-TAGATGC
* * *
23244513 TAGATATGATGAATATATGCATGTTGAGAAAGAACTTAAAACTGAACTTGAAAGAAGGAGGATAT
129 TAGATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATAT
* * * * *
23244578 AGGACTCAATTTTGTTACATTGTCTATGTGAGGGTGAAGCTACTACTCATAATCGTATCCTTAAA
194 AGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
* * * *
23244643 ATGAGATTGAAATGGATCGATCTGCTCAAAAAATCAACGATCTTTCTGAAAAGCTTCAACTGATT
259 ATGAGCTTGAAATGGATTGATCTGCT-AAAAAATCAAGGATCTTTCTGAAAAGCTTCAGCTGATT
* * *
23244708 TACAATCACGACTTTAGGATTACAATTTTCATTTTTACTAATATCACGGTTCACAGATTTAGGAT
323 TACAATCACGAATTTAAGATTACAATGTTCATTTTTACTAATATCACGGTTCACAGATTTAGGAT
* * *
23244773 CATAACTTTTATTTTTAGAACTCGCTGATTTACAATCATGAACACTTCATCAACAGGTCATCGAT
388 CACAACTTTTATTTTTAGAAATCACTGATTTACAATCATGAACACTT-AT--ACA-G--ATCGAT
* * * * *
23244838 TTACGATTGCAACTTAACTTAAATAATTCACTGGTTTACGATCACAACTGTTATTTTTAAAGCTC
447 TTACGATCGCAACTTAACATAAACAATTCACTGATTTACGATCACAACTGTCATTTTTAAAGCTC
*
23244903 ATTAATTTACAACCATGACCTTAGTTCATT
512 ATTAATTTACAACCATGACCTTAGTTCATC
* * * *
23244933 GATTTAAGATCATGAACTTTTCTTTGTTCACAATGAACGTAAATATTCTTAAATAGTTCTAAGCG
1 GATTTAAGATCATGAACTATTCTTTGTTCACAATGAATGTAAAT-TTCTAAAATAGTTCTAAGCA
* * *
23244998 TGGCTAGAGATGATTTTCAACTAGCTAATTTTGGCCTCTCTACCCTTCAGAGCAAATTAGATGCT
65 TGGCAAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTCAGAGCAAAGTAGATGCT
* * * * *
23245063 A-ACTATGGTGAATATATACGTGTTGAGGAAGAACTTAAAGCTGAACTTGAATGAATGAGGATAT
130 AGA-TATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATAT
*
23245127 AGGACTCAATTTTGTTACATTGTGTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
194 AGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
* *
23245192 ATGAGCTTGAAATGGATTAATCTGCTAAAAAATCAAGGATCTTTCTAAAAAGCTTCAGCTGATTT
259 ATGAGCTTGAAATGGATTGATCTGCTAAAAAATCAAGGATCTTTCTGAAAAGCTTCAGCTGATTT
* *
23245257 ACAATCACGAATTTAAGATTACACCA-GTT-ATTTTTACTAATGTCACGG-TCTGCAGATTTAGG
324 ACAATCACGAATTTAAGATTACA--ATGTTCATTTTTACTAATATCACGGTTC-ACAGATTTAGG
* * * *
23245319 ATCACAACTTTTATTTTTA-AAGATCATTGATTTACGATCATGAAGAC-T-T-C-G-TGGATTTA
386 ATCACAACTTTTATTTTTAGAA-ATCACTGATTTACAATCATGAACACTTATACAGATCGATTTA
* *
23245378 CG-TCGCAA-TTCAACATAAACAGTTCACTGATTTACGATCATAACTGTCATTTTTAAAGCTCAT
450 CGATCGCAACTT-AACATAAACAATTCACTGATTTACGATCACAACTGTCATTTTTAAAGCTCAT
* * * * * *
23245441 TGATTTACTACCATGTCTTTATTTTATC
514 TAATTTACAACCATGACCTTAGTTCATC
* *
23245469 GATTTAAGATCATGAACTCTTCTTTGTTCACAATGAATGTAAATTTGCTAAAATAGGTCTAAGCA
1 GATTTAAGATCATGAACTATTCTTTGTTCACAATGAATGTAAATTT-CTAAAATAGTTCTAAGCA
* * **
23245534 TGGCCAGAGATGATTTTCAACTAACTAATTTTGACCTCTCGGCCCTTCAGAGCAAAGTAGATGCT
65 TGGCAAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTCAGAGCAAAGTAGATGCT
* * * * * *
23245599 AGAGATGATGAATATAGGCGTTTTGAGGAAGAACTCAAAAAT-AACCTAT-AAAGAAAGAAGATA
130 AGATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAA-CT-TGAAAGAAAGAGGATA
* * * * * * *
23245662 CAAGACTCAATTTTGTTACATAGTCATTATGAGGCTGAAGCTACTT-CTCTTAATTGTATGCTTG
193 TAGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTA-TTACTCTTAATCGTATCCTTG
* * * * *
23245726 AAATGAGACTTTAAATGG-TATGATCTGCTAAAAGAAACAGGGAACTTTCTGAAAAGCTTTAG-T
257 AAATGAG-CTTGAAATGGAT-TGATCTGCTAAAA-AATCAAGGATCTTTCTGAAAAGCTTCAGCT
*
23245789 GGAATTACAATCACGA
319 -GATTTACAATCACGA
23245805 CCTTCTCCTT
Statistics
Matches: 749, Mismatches: 106, Indels: 45
0.83 0.12 0.05
Matches are distributed among these distances:
535 6 0.01
536 294 0.39
537 35 0.05
538 37 0.05
540 1 0.00
542 1 0.00
545 1 0.00
547 5 0.01
548 124 0.17
549 239 0.32
550 6 0.01
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (541 bp):
GATTTAAGATCATGAACTATTCTTTGTTCACAATGAATGTAAATTTCTAAAATAGTTCTAAGCAT
GGCAAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTCAGAGCAAAGTAGATGCTA
GATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATATAG
GACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAAAT
GAGCTTGAAATGGATTGATCTGCTAAAAAATCAAGGATCTTTCTGAAAAGCTTCAGCTGATTTAC
AATCACGAATTTAAGATTACAATGTTCATTTTTACTAATATCACGGTTCACAGATTTAGGATCAC
AACTTTTATTTTTAGAAATCACTGATTTACAATCATGAACACTTATACAGATCGATTTACGATCG
CAACTTAACATAAACAATTCACTGATTTACGATCACAACTGTCATTTTTAAAGCTCATTAATTTA
CAACCATGACCTTAGTTCATC
Found at i:23249737 original size:134 final size:134
Alignment explanation
Indices: 23249494--23249773 Score: 337
Period size: 134 Copynumber: 2.1 Consensus size: 134
23249484 GATTTATGAA
* * * * *
23249494 CATGAACACTTTATTAAGAGTTCACCAATTTATGATCCCAACTCCACTTAAACAGTTCGTTGATT
1 CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGCTGATT
* * * * * * *
23249559 TATGATTACAACTATCATTTTTAAAGCTTGTTAACTTACGATCAC-GACTACTGTTCATTGATTT
66 TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCACAG-CTACAGTTCAGTGATTT
23249623 AAAAT
130 AAAAT
* * ** *
23249628 CTTGAACACTTCATTAAAAGTTGACAAATTTATGATTGCAACTCCACTTAAGCAATTCGCTGATT
1 CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGCTGATT
* * * * *
23249693 TAAGATCACAACTTTCATTTTTAAAGCTCGTCGATTTACAATCACAGCTTCAGTTTAGTGATTTA
66 TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCACAGCTACAGTTCAGTGATTTA
*
23249758 AGAT
131 AAAT
23249762 CATGAACACTTC
1 CATGAACACTTC
23249774 TTGGTTCACA
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
134 120 0.99
135 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (134 bp):
CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGCTGATT
TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCACAGCTACAGTTCAGTGATTTA
AAAT
Found at i:23250362 original size:134 final size:134
Alignment explanation
Indices: 23250183--23250442 Score: 328
Period size: 134 Copynumber: 1.9 Consensus size: 134
23250173 CATGGGTTCA
** * *
23250183 GTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATACT
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
* * * * *
23250248 TAA-ACAGTTCATTGATTT-ATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCATG
66 TAAGA-AATTCACTGATTTAAT-ATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCATG
23250311 ACTATT
129 ACTATT
* * * * *
23250317 GTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTT-AGCCAATTTATGATCGCAACTCCAC
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCA-CCAATTTATGATCCCAAATACAC
* *
23250381 TTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCA
65 TTAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCA
23250443 CAACTTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
133 1 0.01
134 103 0.96
135 3 0.03
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (134 bp):
GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
TAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCATGAC
TATT
Found at i:23250461 original size:134 final size:134
Alignment explanation
Indices: 23250183--23250478 Score: 314
Period size: 134 Copynumber: 2.2 Consensus size: 134
23250173 CATGGGTTCA
* ** * *
23250183 GTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATACT
1 GTTCAGTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
* * * * * **
23250248 TAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCATGAC
66 TAAACAATTCACTGATTTATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACAAC
*
23250313 TATT
131 TAAT
* * * * * *
23250317 GTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTT-AGCCAATTTATGATCGCAACTCCAC
1 GTTCAGTGATTTAAAATCATGAACACTTCATTAAAAGTTCA-CCAATTTATGATCCCAAATACAC
* *
23250381 TTAAGA-AATTCACTGATTTAAT-ATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCAC
65 TTAA-ACAATTCACTGATTT-ATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCAC
23250444 AACTTCAAT
128 AAC-T-AAT
*
23250453 -TT-AGTGATTTAAGATCATGAACACTT
1 GTTCAGTGATTTAAAATCATGAACACTT
23250479 ATTGGTTCAT
Statistics
Matches: 134, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
133 1 0.01
134 125 0.93
135 6 0.04
136 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (134 bp):
GTTCAGTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
TAAACAATTCACTGATTTATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACAAC
TAAT
Found at i:23252123 original size:134 final size:134
Alignment explanation
Indices: 23251870--23252223 Score: 388
Period size: 134 Copynumber: 2.6 Consensus size: 134
23251860 AATCCTCTGT
* * * *
23251870 TAATTTACAATT-ACAACTGTCATTTTTAAAGCTCGCTGATTTA-AGATCACAGATTCAATTCAT
1 TAATTTAC-ATTCACAACAGTCATTTTTAAAGCTCGCTAATTTACA-ATCACAGCTTCAGTTCAT
* * * *
23251933 TGATTTATGATAATGAAAACTTTATTAAGAGGTCACCGATTTACAATTGAAACTCCACCTAAGGA
64 TGATTTACGATAATGAAAACTTCATTAAGAGGTCACCAATTTACAATCGAAACTCCACCTAAGGA
23251998 GTTCAC
129 GTTCAC
* ** * * *
23252004 TGATTTATGTTTACAGCAGTCATTTTTAAAGCTCGCTAATTTACAATCACACCTTCAGTTCATTG
1 TAATTTACATTCACAACAGTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATTG
* * * * ** * * * *
23252069 ATTTACGATCATGAATACTTCATTAAGTGTTCACCAATTTATGATCGCACCTCCACTTAAGTAGT
66 ATTTACGATAATGAAAACTTCATTAAGAGGTCACCAATTTACAATCGAAACTCCACCTAAGGAGT
23252134 TCAC
131 TCAC
* * * * * *
23252138 TAATTTACATTCGCAACGGTTATTTTTAAACCTCGTTAATTTACAATCACGGCTTCAGTTCATTG
1 TAATTTACATTCACAACAGTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATTG
* *
23252203 ATTTACGATTATGAACACTTC
66 ATTTACGATAATGAAAACTTC
23252224 TTGGTTTAAA
Statistics
Matches: 181, Mismatches: 37, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
133 2 0.01
134 178 0.98
135 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (134 bp):
TAATTTACATTCACAACAGTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATTG
ATTTACGATAATGAAAACTTCATTAAGAGGTCACCAATTTACAATCGAAACTCCACCTAAGGAGT
TCAC
Found at i:23253540 original size:134 final size:134
Alignment explanation
Indices: 23253355--23253596 Score: 324
Period size: 134 Copynumber: 1.8 Consensus size: 134
23253345 CATGGGTTCA
** ** * *
23253355 GTTCATTAATTTACGATCATGAATGCTTCATTAAGAGTTCACCAACTTATGATCCCAACTCCACT
1 GTTCATTAATTTAAAATCATGAACACTTCATTAAAAGCTCACCAACTTATGATCCCAACTCCACT
* *
23253420 TAAACAGTTCGTTGATT-TATGATCACAACTATCATTTTTAAAGCTTGTTAATTTACTATCATGA
66 TAAACAATTCGTTGATTGCA-GATCACAACTATCATTTTTAAAGCTTGTTAATTTACTATCATGA
23253484 CTATT
130 CTATT
* ** * *
23253489 GTTCATTAATTTAAAATCTTGAACACTTCATTAAAAGCTGGCCAATTTATGATCGCAACTCCACT
1 GTTCATTAATTTAAAATCATGAACACTTCATTAAAAGCTCACCAACTTATGATCCCAACTCCACT
* * *
23253554 TAAGCAATTCGTTGATTGCAGATTACAACTGTCATTTTTAAAG
66 TAAACAATTCGTTGATTGCAGATCACAACTATCATTTTTAAAG
23253597 TTCACTGATT
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
134 90 0.99
135 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (134 bp):
GTTCATTAATTTAAAATCATGAACACTTCATTAAAAGCTCACCAACTTATGATCCCAACTCCACT
TAAACAATTCGTTGATTGCAGATCACAACTATCATTTTTAAAGCTTGTTAATTTACTATCATGAC
TATT
Found at i:23253627 original size:134 final size:131
Alignment explanation
Indices: 23253317--23253651 Score: 323
Period size: 134 Copynumber: 2.5 Consensus size: 131
23253307 ATAAAAAATT
* * * * **
23253317 TCATTTTTAAAACTTGATGATTTACAATCATGGGTTCAGTTCATTAATTTACGATCATGAATGCT
1 TCATTTTT-AAAGTT-ATGATTTACAATCA-AGCTTCAGTTCATTAATTTAAGATCATGAACACT
* * * *
23253382 TCATTAAGAGTTCACCAACTTATGATCCCAACTCCACTTAAACAGTTCGTTGATTTATGATCACA
63 TCATTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGTTGATTCATGATCACA
23253447 ACTA
128 ACTA
* * * * * * *
23253451 TCATTTTTAAAGCTTGTTAATTTACTATCATGACTAT-TGTTCATTAATTTAAAATCTTGAACAC
1 TCATTTTTAAAG-TT-ATGATTTACAATCAAG-CT-TCAGTTCATTAATTTAAGATCATGAACAC
** * * * *
23253515 TTCATTAAAAGCTGGCCAATTTATGATCGCAACTCCACTTAAGCAATTCGTTGATTGCA-GATTA
62 TTCATTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGTTGATT-CATGATCA
*
23253579 CAACTG
126 CAACTA
* *
23253585 TCATTTTTAAAGTTCACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACT
1 TCATTTTTAAAGTT-A-TGATTTACAATCA-AGCTTCAGTTCATTAATTTAAGATCATGAACACT
23253650 TC
63 TC
23253652 TTGCTTCACA
Statistics
Matches: 161, Mismatches: 33, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
133 7 0.04
134 151 0.94
135 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (131 bp):
TCATTTTTAAAGTTATGATTTACAATCAAGCTTCAGTTCATTAATTTAAGATCATGAACACTTCA
TTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGTTGATTCATGATCACAACT
A
Found at i:23254339 original size:398 final size:398
Alignment explanation
Indices: 23253599--23254344 Score: 1030
Period size: 398 Copynumber: 1.9 Consensus size: 398
23253589 TTTTAAAGTT
*
23253599 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAT
1 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAG
* * *
23253664 GAATGTAAATTTGCTAAACTAGTTCTAAGCATGGTCATAAATAATTTTCAACTAGCTAATTCTAA
66 GAATGTAAATTTGCTAAACTAGTTCTAAACATGGCCAGAAATAATTTTCAACTAGCTAATTCTAA
* * * * * *
23253729 CTTCTCTACCCTTCAGAGCAAGCCAGATGCTAAATATTATGAATATAGTCGTGTTGAGAAAGAAC
131 CCTCTCTACCCTTCAAAGCAAGCCAGATGCTAAAGATTATAAATATAGACGTGTTCAGAAAGAAC
* * *
23253794 TCAAAACTGACATTGAAAGAAAAATAATAGAGGAATCAATTTGTTACATTGTCTTTGTGATGCTA
196 TCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAATTTGTTACATTGTCTTTGTGAGGCTA
* * * * *
23253859 AAGCTACTTCTATTAACCGTATGCCTAAAATAAGGTTTGAAATGGATCGATCTGCTTAAAAAAAT
261 AAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTGAAATGGACCGATCTGCATAAAAAAAT
*
23253924 AAGGAAATTTTTGAAAAGCTTCAACCAATTTTTTATCATAACCTATTTACAGGATGTTACAAATC
326 AAGGAAATTTATGAAAAGCTTCAACCAATTTTTTATCATAACCTATTTACAGGATGTTACAAATC
23253989 TCACGGTC
391 TCACGGTC
** * * *
23253997 CACTGATTTACAATCATGGCTTCAGTTCATTGATTTATGATCATGAACACTTCTTAG-TTTACAA
1 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTT-GCTTCACAA
* * * * * *
23254061 GGAATGTAAATTTGCTGAACTAGTTCTAAACGTGGCCAGAGATGATTTTCAACTAGCTAATTTTG
65 GGAATGTAAATTTGCTAAACTAGTTCTAAACATGGCCAGAAATAATTTTCAACTAGCTAATTCTA
* * * ** *
23254126 ACCTCTCTGCCTTTCAAAGCAGGTTAGATGCTAAAGATTATAAATATAGACGTGTTCAGGAAGAA
130 ACCTCTCTACCCTTCAAAGCAAGCCAGATGCTAAAGATTATAAATATAGACGTGTTCAGAAAGAA
* ** *
23254191 TTCAAAACTAACATTGAAAGAAGGATGATAGAGGAAACAATTTTGTTACATTGTCTTTGTGAGGC
195 CTCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAA-TTTGTTACATTGTCTTTGTGAGGC
* * * * *
23254256 TAAAGCTACTTCTCTTCACCGTACGTCTAAAAGGAGGCTTGAAATGGACCTATCTG-ATAAAAAA
259 TAAAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTGAAATGGACCGATCTGCATAAAAAA
*
23254320 ACT-AGGAACTTTATGAAAAGCTTCA
324 A-TAAGGAAATTTATGAAAAGCTTCA
23254345 GCTAATTTAT
Statistics
Matches: 299, Mismatches: 46, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
398 227 0.76
399 72 0.24
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (398 bp):
CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAG
GAATGTAAATTTGCTAAACTAGTTCTAAACATGGCCAGAAATAATTTTCAACTAGCTAATTCTAA
CCTCTCTACCCTTCAAAGCAAGCCAGATGCTAAAGATTATAAATATAGACGTGTTCAGAAAGAAC
TCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAATTTGTTACATTGTCTTTGTGAGGCTA
AAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTGAAATGGACCGATCTGCATAAAAAAAT
AAGGAAATTTATGAAAAGCTTCAACCAATTTTTTATCATAACCTATTTACAGGATGTTACAAATC
TCACGGTC
Found at i:23255805 original size:33 final size:33
Alignment explanation
Indices: 23255768--23255846 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
23255758 GTCGGGGTGT
* * **
23255768 GGCCATGTGGGCCGCACGGGCTAAACTGAATTA
1 GGCCATGTGGGCCACACAGGCTAAACCAAATTA
*
23255801 GGCCATGTGGACCACACAGGCTAAACCAAATTA
1 GGCCATGTGGGCCACACAGGCTAAACCAAATTA
*
23255834 GGCCATATGGGCC
1 GGCCATGTGGGCC
23255847 TTACGGGAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.28, C:0.27, G:0.29, T:0.16
Consensus pattern (33 bp):
GGCCATGTGGGCCACACAGGCTAAACCAAATTA
Found at i:23258981 original size:20 final size:20
Alignment explanation
Indices: 23258940--23259010 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
23258930 AGTGACGGAG
23258940 TATATACATAGTATTAAAAAA
1 TATATACATAGTATT-AAAAA
23258961 TATATACATAGTATTAAAAA
1 TATATACATAGTATTAAAAA
23258981 TATATACATAGTATTAAAAA
1 TATATACATAGTATTAAAAA
23259001 TATATACATA
1 TATATACATA
23259011 ATATATACAT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 35 0.70
21 15 0.30
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (20 bp):
TATATACATAGTATTAAAAA
Found at i:23259093 original size:23 final size:23
Alignment explanation
Indices: 23259067--23259192 Score: 86
Period size: 25 Copynumber: 5.3 Consensus size: 23
23259057 TAATACTACA
*
23259067 TAAATATACACATATATATATAT
1 TAAAAATACACATATATATATAT
23259090 T-AAAA-A-ACATA-ATA-ATAT
1 TAAAAATACACATATATATATAT
*
23259108 TAAAAATACGTACATA-ATATTTAT
1 TAAAAATAC--ACATATATATATAT
23259132 TAAAAAATACATACA-ATATATAGTAT
1 T-AAAAATAC--ACATATATATA-TAT
*
23259158 TAAGAATATACACAATATATATGGTAT
1 TAA-AA-ATACAC-ATATATAT-ATAT
23259185 TAAAAATA
1 TAAAAATA
23259193 TAGTATTAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 26
0.73 0.04 0.23
Matches are distributed among these distances:
18 5 0.06
19 7 0.08
20 6 0.07
21 1 0.01
22 3 0.04
23 9 0.11
24 5 0.06
25 23 0.27
26 9 0.11
27 16 0.19
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAAAATACACATATATATATAT
Found at i:23259109 original size:18 final size:20
Alignment explanation
Indices: 23259076--23259128 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
23259066 ATAAATATAC
*
23259076 ACATATATATATATTAAAAA-
1 ACATACATA-ATATTAAAAAT
23259096 ACATA-ATAATATTAAAAAT
1 ACATACATAATATTAAAAAT
*
23259115 ACGTACATAATATT
1 ACATACATAATATT
23259129 TATTAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 10 0.33
19 7 0.23
20 13 0.43
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (20 bp):
ACATACATAATATTAAAAAT
Found at i:23259172 original size:25 final size:26
Alignment explanation
Indices: 23259129--23259194 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
23259119 ACATAATATT
23259129 TATTAAAAA-ATACATACAATATATA-G
1 TATTAAAAATATAC--ACAATATATAGG
*
23259155 TATTAAGAATATACACAATATATATGG
1 TATTAAAAATATACACAATATATA-GG
23259182 TATTAAAAATATA
1 TATTAAAAATATA
23259195 GTATTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 10 0.29
26 8 0.23
27 17 0.49
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (26 bp):
TATTAAAAATATACACAATATATAGG
Found at i:23259261 original size:27 final size:25
Alignment explanation
Indices: 23259231--23259293 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
23259221 AAGTATTGAT
23259231 TAAAAATAATACTAATAATAG-TAATAG
1 TAAAAATAATA--AATAATAGAT-ATAG
23259258 TAAAATACTAATAAATAATAGATATAG
1 TAAAA-A-TAATAAATAATAGATATAG
*
23259285 TAATAATAA
1 TAAAAATAA
23259294 GAATATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
25 3 0.09
26 1 0.03
27 21 0.66
28 2 0.06
29 5 0.16
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.30
Consensus pattern (25 bp):
TAAAAATAATAAATAATAGATATAG
Found at i:23259771 original size:19 final size:19
Alignment explanation
Indices: 23259749--23259788 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
23259739 ATACTAATGC
23259749 TAATAAATAAT-AAATATAA
1 TAAT-AATAATAAAATATAA
*
23259768 TAATAGTAATAAAATATAA
1 TAATAATAATAAAATATAA
23259787 TA
1 TA
23259789 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAATAATAATAAAATATAA
Found at i:23259786 original size:25 final size:28
Alignment explanation
Indices: 23259749--23259800 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 28
23259739 ATACTAATGC
23259749 TAATAAATAATAA-A-TATA-ATAATAG
1 TAATAAATAATAATAGTATACATAATAG
23259774 TAATAAA-ATATAATAGTATACATAATA
1 TAATAAATA-ATAATAGTATACATAATA
23259801 TTAAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
24 1 0.04
25 11 0.48
26 1 0.04
27 4 0.17
28 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
TAATAAATAATAATAGTATACATAATAG
Found at i:23265278 original size:18 final size:17
Alignment explanation
Indices: 23265239--23265278 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
23265229 CAAATTAGAC
23265239 CGTGTGGGTCATACGAG
1 CGTGTGGGTCATACGAG
* *
23265256 TGTGTGGGTCTATACGGG
1 CGTGTGGGTC-ATACGAG
23265274 CGTGT
1 CGTGT
23265279 AGAATTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.12, C:0.15, G:0.42, T:0.30
Consensus pattern (17 bp):
CGTGTGGGTCATACGAG
Found at i:23278191 original size:134 final size:135
Alignment explanation
Indices: 23277948--23278240 Score: 358
Period size: 134 Copynumber: 2.2 Consensus size: 135
23277938 CGGTCTGCTA
* * * *
23277948 ATTTACGATCATGGCTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCGA
1 ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCAA
* * *
23278013 TTTACGATCGCAACTCTACTTAACTAGTTTGCTAATTTATGATCACAACTGTCACTTTTAAAACT
66 TTTACGATCGCAACTCCACTTAACTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAACT
* *
23278078 CGCTG
131 CACTC
* * * * ***
23278083 ATTTACAATGACGACTTCAGTTCATTGA-TTTACGATCTTGAACACTTTATT-AGATATTGGTCA
1 ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGA-ATTCACCA
* * *
23278146 ATTTATGATCGCAACTCCACTTAAGC-AGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAA
65 ATTTACGATCGCAACTCCACTTAA-CTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAA
23278210 CTCACTC
129 CTCACTC
* *
23278217 ATTTACAATCACGGCTTCAATTCA
1 ATTTACAATCACGACTTCAGTTCA
23278241 CTAATTTATG
Statistics
Matches: 134, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
133 3 0.02
134 106 0.79
135 25 0.19
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (135 bp):
ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCAA
TTTACGATCGCAACTCCACTTAACTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAACT
CACTC
Found at i:23278346 original size:98 final size:98
Alignment explanation
Indices: 23278145--23278338 Score: 259
Period size: 98 Copynumber: 2.0 Consensus size: 98
23278135 GATATTGGTC
* * *
23278145 AATTTATGATCGCAACTCCACTTAAGCAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAA
1 AATTTATGATCGCAACTCCACTTAAGCAGTTCGATAATCTACGATCACAACTGTCATTTTTAAAA
23278210 CTCACTCATTTACAATCACGGCTTCAATTCACT
66 CTCACTCATTTACAATCACGGCTTCAATTCACT
* *
23278243 AATTTATGATCGCAACTCCACTTATA-TAGTTC-ATAAATCTACGATCAGAACTGTCATTTTTAA
1 AATTTATGATCGCAACTCCACTTA-AGCAGTTCGAT-AATCTACGATCACAACTGTCATTTTTAA
* * * *
23278306 AGCTTACTGATTTACAATC-CTGGCTTCAGTTCA
64 AACTCACTCATTTACAATCAC-GGCTTCAATTCA
23278339 TTGATTTACG
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
97 2 0.02
98 81 0.96
99 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (98 bp):
AATTTATGATCGCAACTCCACTTAAGCAGTTCGATAATCTACGATCACAACTGTCATTTTTAAAA
CTCACTCATTTACAATCACGGCTTCAATTCACT
Found at i:23278927 original size:133 final size:134
Alignment explanation
Indices: 23278717--23279075 Score: 474
Period size: 133 Copynumber: 2.7 Consensus size: 134
23278707 CATGGTCTGC
* * ** *
23278717 TGATATACGATCACAACTGTCAATTTTAAAGCTTGTTGATTTACGATCA-AGACTTCAGTTCATT
1 TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACA-ACTTCAGTTCATT
*
23278781 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCCCAACTCCACTTAAATAG
65 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAG
23278846 TTCGT
130 TTCGT
* *
23278851 TGATTTACAGTCACAACT-T-TATTTTTAAAGCTCGTTGTTTTACGATCACAACTTCAGTTCATT
1 TGATTTACAATCACAACTGTCT-TTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTCATT
* * * *
23278914 GATTTACGGTCATGAACACTTTATTAAGAGTTTGCCGATTTACAATCACAAGTCTACTTAAATAG
65 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAG
23278979 TTCGT
130 TTCGT
* ** * * *
23278984 TGATTTTCAATCACAACTGTCTTTTTTAAAGCTCACTGATTTACAATCACAACTTCAGATAATTG
1 TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTCATTG
* * *
23279049 ATTTATGATTATG-ACAATTTCATTAAG
66 ATTTACGATCATGAAC-ACTTCATTAAG
23279076 GATTTTAACA
Statistics
Matches: 195, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
133 121 0.62
134 73 0.37
135 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (134 bp):
TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTCATTG
ATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAGT
TCGT
Found at i:23280079 original size:20 final size:20
Alignment explanation
Indices: 23280056--23280093 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23280046 CACCTTTAAC
23280056 CTTATATATATATATTTATT
1 CTTATATATATATATTTATT
* *
23280076 CTTATTTATATATTTTTA
1 CTTATATATATATATTTA
23280094 AGTCGTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
CTTATATATATATATTTATT
Found at i:23280409 original size:16 final size:16
Alignment explanation
Indices: 23280388--23280420 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23280378 TTTTAAACAC
23280388 ATATAATTAAATATAA
1 ATATAATTAAATATAA
*
23280404 ATATAATTATATATAA
1 ATATAATTAAATATAA
23280420 A
1 A
23280421 CACATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATTAAATATAA
Found at i:23281422 original size:31 final size:31
Alignment explanation
Indices: 23281380--23281438 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
23281370 TAACGAAGAG
*
23281380 TGACCAAAATAGAAATAA-TCTAAAACGTAAA
1 TGACCAAAATAGAAAAAATTC-AAAACGTAAA
*
23281411 TGACCAGAATAGAAAAAATTCAAAACGT
1 TGACCAAAATAGAAAAAATTCAAAACGT
23281439 TAGTGACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.19
Consensus pattern (31 bp):
TGACCAAAATAGAAAAAATTCAAAACGTAAA
Found at i:23285582 original size:39 final size:39
Alignment explanation
Indices: 23285434--23285582 Score: 203
Period size: 39 Copynumber: 3.8 Consensus size: 39
23285424 TTCTACTCCT
* * *
23285434 CCCATGCTACTTTGTTTTATTATTAATCAAAAAC-AC-TC
1 CCCATACTATTTTGTTTTATTATTAAT-TAAAACTACTTC
* * * *
23285472 CCCATGCTATTTTGTTTTATTGTTAATTAAAATTATTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
23285511 CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
*
23285550 CTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCATACTATTTTGTTTTATTATTAATTAAAAC
23285583 CATACTTTAT
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
37 4 0.04
38 26 0.26
39 69 0.70
ACGTcount: A:0.30, C:0.17, G:0.05, T:0.48
Consensus pattern (39 bp):
CCCATACTATTTTGTTTTATTATTAATTAAAACTACTTC
Found at i:23286860 original size:45 final size:45
Alignment explanation
Indices: 23286793--23286878 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
23286783 CGATATCTGC
* *
23286793 TATCTTTGATCTGCCCCTCGTCTACTACAGAGACGCCAAATCTAT
1 TATCTTCGATCTGCCCCTCGTCTAATACAGAGACGCCAAATCTAT
23286838 TATCTTCGATCTGCTCCC-CGTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTGC-CCCTCGTCTAATACAGAGACGCCAAAT
23286879 TTGCTTCTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
45 35 0.92
46 3 0.08
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (45 bp):
TATCTTCGATCTGCCCCTCGTCTAATACAGAGACGCCAAATCTAT
Found at i:23287398 original size:210 final size:209
Alignment explanation
Indices: 23287092--23287525 Score: 683
Period size: 210 Copynumber: 2.1 Consensus size: 209
23287082 GATGCCAAAC
* * * *
23287092 CATCTTGGATCCGCTTCAGCATTAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCA
1 CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTATGCTCTCCATCA
*
23287157 AAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
66 AAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
* *
23287222 GCTTCATCGAAAAAACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAG
131 GCTTCATCGAAAAAACGTG-AAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAG
23287287 AGAGATAAGATCTGT
195 AGAGATAAGATCTGT
* * * * *
23287302 CATCTTGGATCTGCTTCAGCGTAAACATCTGAGGGTAAGATCTGCTATGTGTATGC-CTTCCATT
1 CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTATGCTC-TCCATC
* * *
23287366 AAAGTGGAA-ATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
65 AAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGAT
*
23287430 TTGCTTCATCGAAAACACGTGAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAA
129 TTGCTTCATCGAAAAAACGTGAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAA
23287495 GAGAGATAAGATCTGT
194 GAGAGATAAGATCTGT
23287511 CATCTTGGATCTGCT
1 CATCTTGGATCTGCT
23287526 ATGTGTCTGC
Statistics
Matches: 206, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
209 74 0.36
210 129 0.63
211 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (209 bp):
CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTATGCTCTCCATCA
AAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
GCTTCATCGAAAAAACGTGAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAGA
GAGATAAGATCTGT
Found at i:23287713 original size:92 final size:92
Alignment explanation
Indices: 23287419--23287716 Score: 242
Period size: 92 Copynumber: 3.3 Consensus size: 92
23287409 AGACGACAAA
* * *
23287419 TCATCTTAGATTTGCTTCATCGAAAACACGTG-AAGCCAAATCAGCTATATCTTCGATCTGCTCC
1 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCC
*
23287483 CTGCCGAATAAAGAGAGATAAGATCTG
66 CTGCCGAATACAGAGAGATAAGATCTG
* * *** * * * ** * * *
23287510 TCATCTTGGATCTGC-T-ATGTGTCTGCCTTCTATCAAAGTGGAAAT--GCCAGA-CTTCGATTT
1 TCATCTTAGATCTGCTTCA-GCGT-AAAC-AC-GTGAAAG-CCAAATCAGCTATATCTTCGATCT
* * * *
23287570 GTTCTCTGAC-AATACAGAGACGACAA-A----
61 GCTCCCTGCCGAATACAGAGA-GATAAGATCTG
* *
23287597 TCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCC
1 TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCC
23287662 CTGCCGAATACAGAGAGATAAGATCTG
66 CTGCCGAATACAGAGAGATAAGATCTG
*
23287689 TCATCTTGGATCTGCTTCAGCGTAAACA
1 TCATCTTAGATCTGCTTCAGCGTAAACA
23287717 TCTGAAGGTA
Statistics
Matches: 146, Mismatches: 43, Indels: 35
0.65 0.19 0.16
Matches are distributed among these distances:
84 4 0.03
85 5 0.03
86 5 0.03
87 33 0.23
88 14 0.10
89 2 0.01
90 2 0.01
91 24 0.16
92 45 0.31
93 5 0.03
94 3 0.02
95 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (92 bp):
TCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCC
CTGCCGAATACAGAGAGATAAGATCTG
Found at i:23287880 original size:210 final size:210
Alignment explanation
Indices: 23287518--23288529 Score: 1623
Period size: 210 Copynumber: 4.8 Consensus size: 210
23287508 TGTCATCTTG
*
23287518 GATCTGCTATGTGTCTGCCTTCTATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
23287583 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
23287648 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
23287713 AACATCTGAAGGTAA
196 AACATCTGAAGGTAA
* *
23287728 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATACCAGACTTCGATTTGTTCACTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
*
23287793 ACAGCGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
*
23287858 CTTTGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
*
23287923 AACATTTGAAGGTAA
196 AACATCTGAAGGTAA
* *
23287938 GATCTGCTATGTGTCTACCTTTCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
*
23288003 ACAGCGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
* *
23288068 CTTTGATCTGCTCCCTACCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
*
23288133 AACATTTGAAGGTAA
196 AACATCTGAAGGTAA
*
23288148 GATCTGCTATGTGTCTACCTT-CATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
* * *
23288212 ACAGAGACGACAAATCATCTTAGATTTGTTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
* * * ** * *
23288277 CTTCGATTTGTTCCTTG-TAAACACA-AG-GATGCCAA-A-C---CATCTTGGATCCGCTTCAGC
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGAT---AAGATCTGTCATCTTGGATCTGCTTCAGC
* *
23288334 ATAAACATCTGAAGGTCA
193 GTAAACATCTGAAGGTAA
* *
23288352 GATCTGCTATGTGTCTG-CTCTCCATCAAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACA
1 GATCTGCTATGTGTCTGCCT-TCCATCAAAGTGGAA-ATGCCAGACTTCGATTTGTTCTCTGACA
* *
23288415 ATACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTAT
64 ATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTAT
* *
23288480 ATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTT
129 ATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTT
23288530 AGACCTGCCC
Statistics
Matches: 746, Mismatches: 42, Indels: 28
0.91 0.05 0.03
Matches are distributed among these distances:
203 2 0.00
204 54 0.07
205 112 0.15
206 9 0.01
207 6 0.01
208 9 0.01
209 118 0.16
210 436 0.58
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (210 bp):
GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
AACATCTGAAGGTAA
Found at i:23296432 original size:13 final size:15
Alignment explanation
Indices: 23296402--23296432 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
23296392 TTCTAGATTT
23296402 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
23296417 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
23296432 T
1 T
23296433 AGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:23296518 original size:15 final size:14
Alignment explanation
Indices: 23296476--23296525 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
23296466 ATAACCTTGA
*
23296476 ATGCAAATGATGTG
1 ATGCAAATGATGAG
23296490 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
23296505 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
23296519 ATGCAAA
1 ATGCAAA
23296526 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:23297812 original size:26 final size:26
Alignment explanation
Indices: 23297776--23297859 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
23297766 TGATACAAAT
*
23297776 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23297802 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23297828 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23297854 TGATAA
1 TGATAA
23297860 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23299367 original size:25 final size:26
Alignment explanation
Indices: 23299339--23299390 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
23299329 TTTACAGTTT
23299339 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
23299364 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
23299390 T
1 T
23299391 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:23303545 original size:26 final size:26
Alignment explanation
Indices: 23303503--23303585 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
23303493 TGATACAAAT
*
23303503 TGATAATA-GTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23303528 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
23303554 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
23303580 TGATAA
1 TGATAA
23303586 GAATTTCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 8 0.15
26 47 0.85
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:23306108 original size:93 final size:93
Alignment explanation
Indices: 23306000--23306171 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
23305990 CGCCCATAAG
* * *
23306000 CGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCTATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
23306064 AATGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
23306093 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
23306158 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
23306172 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:23306166 original size:46 final size:47
Alignment explanation
Indices: 23305993--23306162 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 47
23305983 TGTAACCCGC
* *
23305993 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACATTCGCAT
* * * * *
23306039 CTATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GA-GAC-A-TTCGCAT
* *
23306089 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACATTCGCAT
*
23306132 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
23306163 TTCGGATGCT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.56
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGACATTCGCAT
Found at i:23306187 original size:46 final size:44
Alignment explanation
Indices: 23306044--23306187 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
23306034 CGCATCTATA
* *
23306044 AGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
23306091 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
23306137 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
23306183 AGTGA
1 AGTGA
23306188 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:23312563 original size:39 final size:39
Alignment explanation
Indices: 23312498--23312624 Score: 186
Period size: 39 Copynumber: 3.3 Consensus size: 39
23312488 CTTTGTTTTA
* * *
23312498 TTAATCAAAAATAC-TACCCATGCTATTTTGTTTTATTG
1 TTAATTAAAACTACTTACCCATACTATTTTGTTTTATTG
*
23312536 TTAATTAAAACTATTTACCCATACTATTTTGTTTTATTG
1 TTAATTAAAACTACTTACCCATACTATTTTGTTTTATTG
*
23312575 TTAATTAAAACTACTT-CCTCATACTATTTTGTTTTATTA
1 TTAATTAAAACTACTTACC-CATACTATTTTGTTTTATTG
23312614 TTAATTAAAAC
1 TTAATTAAAAC
23312625 CATACTTTAT
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 13 0.16
39 68 0.84
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (39 bp):
TTAATTAAAACTACTTACCCATACTATTTTGTTTTATTG
Done.