Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 9 of 378
Found at i:2599612 original size:27 final size:27
Alignment explanation
Indices: 2599547--2599659 Score: 72
Period size: 27 Copynumber: 4.1 Consensus size: 27
2599537 GACTTAACCG
* * *
2599547 ATTAAATAATAATTATTATAAAATATTAT
1 ATTAAAT-TTAATTATTATATAAT-TAAT
*
2599576 TTTAAA-TTAATTATTATATAATTAAT
1 ATTAAATTTAATTATTATATAATTAAT
*
2599602 ATTAAATTTAAAATTTATTATTTTAATTAA-
1 ATTAAATTT--AA-TTATTA-TATAATTAAT
* *
2599632 A-TATAATTTAATTA-AATTTAATTAAT
1 ATTA-AATTTAATTATTATATAATTAAT
2599658 AT
1 AT
2599660 CCAAAGTAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
25 9 0.13
26 10 0.14
27 19 0.28
28 2 0.03
29 9 0.13
30 12 0.17
31 8 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTAAATTTAATTATTATATAATTAAT
Found at i:2599641 original size:15 final size:15
Alignment explanation
Indices: 2599623--2599654 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2599613 AATTTATTAT
2599623 TTTAATTAAATATAA
1 TTTAATTAAATATAA
*
2599638 TTTAATTAAATTTAA
1 TTTAATTAAATATAA
2599653 TT
1 TT
2599655 AATATCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAATTAAATATAA
Found at i:2606108 original size:8 final size:9
Alignment explanation
Indices: 2606081--2606105 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2606071 TATATAATAC
2606081 ATTAAAAAT
1 ATTAAAAAT
2606090 ATTAAAAAT
1 ATTAAAAAT
2606099 ATTAAAA
1 ATTAAAA
2606106 TATAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:2612197 original size:21 final size:21
Alignment explanation
Indices: 2612166--2612215 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
2612156 TCTAATAAAG
* *
2612166 AATATAA-ATATACATTTAATC
1 AATATAATATA-AAATTAAATC
2612187 AACTATAATATAAAATTAAATC
1 AA-TATAATATAAAATTAAATC
2612209 AATATAA
1 AATATAA
2612216 AATATAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 7 0.28
22 15 0.60
23 3 0.12
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (21 bp):
AATATAATATAAAATTAAATC
Found at i:2614344 original size:20 final size:21
Alignment explanation
Indices: 2614314--2614357 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
2614304 TACTTTTATA
2614314 TTAATTTTTATATT-TTATATT
1 TTAATTTTTATATTCTTA-ATT
*
2614335 TTAA-TTTTATTTTCTTAATT
1 TTAATTTTTATATTCTTAATT
2614355 TTA
1 TTA
2614358 TGATAACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (21 bp):
TTAATTTTTATATTCTTAATT
Found at i:2614352 original size:14 final size:13
Alignment explanation
Indices: 2614319--2614358 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
2614309 TTATATTAAT
2614319 TTTTATATTTTATA
1 TTTTA-ATTTTATA
*
2614333 TTTTAATTTTATT
1 TTTTAATTTTATA
2614346 TTCTTAATTTTAT
1 TT-TTAATTTTAT
2614359 GATAACTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTAATTTTATA
Found at i:2618128 original size:25 final size:23
Alignment explanation
Indices: 2618083--2618130 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
2618073 AGCAAAGCAA
*
2618083 AGCAAAACCCATCATTAATCTAC
1 AGCAAAACCCATCAGTAATCTAC
*
2618106 AGCAAAACCACCATCAGTCATCTAC
1 AGCAAAA-C-CCATCAGTAATCTAC
2618131 TACAGTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 1 0.05
25 13 0.62
ACGTcount: A:0.42, C:0.33, G:0.06, T:0.19
Consensus pattern (23 bp):
AGCAAAACCCATCAGTAATCTAC
Found at i:2624211 original size:28 final size:28
Alignment explanation
Indices: 2624171--2624233 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
2624161 GTCATTATCA
2624171 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
2624199 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
2624227 ACCCCAT
1 ACCCCAT
2624234 TAATATGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:2624393 original size:14 final size:14
Alignment explanation
Indices: 2624353--2624393 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
2624343 AAAAAGAAGA
2624353 TACACTCTCTCTTC
1 TACACTCTCTCTTC
2624367 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
2624378 TACACTCTTTCTTC
1 TACACTCTCTCTTC
2624392 TA
1 TA
2624394 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:2639830 original size:28 final size:28
Alignment explanation
Indices: 2639790--2639848 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
2639780 GTCATTATCA
2639790 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
2639818 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
2639846 ACC
1 ACC
2639849 TCATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:2640012 original size:14 final size:14
Alignment explanation
Indices: 2639972--2640012 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
2639962 AAAAAGAAGA
2639972 TACACTCTCTCTTC
1 TACACTCTCTCTTC
2639986 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
2639997 TACACTCTTTCTTC
1 TACACTCTCTCTTC
2640011 TA
1 TA
2640013 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:2641351 original size:12 final size:12
Alignment explanation
Indices: 2641334--2641359 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2641324 TAATTACAAA
2641334 AAAAAAAAAAAG
1 AAAAAAAAAAAG
2641346 AAAAAAAAAAAG
1 AAAAAAAAAAAG
2641358 AA
1 AA
2641360 GAAGAAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:2641351 original size:15 final size:15
Alignment explanation
Indices: 2641331--2641362 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2641321 TCTTAATTAC
2641331 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
2641346 AAAAAAAAAAAGAAG
1 AAAAAAAAAAAAAAG
2641361 AA
1 AA
2641363 GAAGCCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:2649634 original size:15 final size:15
Alignment explanation
Indices: 2649616--2649695 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
2649606 AGAATGACTA
2649616 AAATAGAAATGATCT
1 AAATAGAAATGATCT
* * * **
2649631 AAATCGTGAGTGATAA
1 AAATAG-AAATGATCT
2649647 AAATAGAAATGATCT
1 AAATAGAAATGATCT
* * * **
2649662 AAATCGTGAGTGATAA
1 AAATAG-AAATGATCT
2649678 AAATAGAAATGATCT
1 AAATAGAAATGATCT
2649693 AAA
1 AAA
2649696 ATATTAGTGA
Statistics
Matches: 43, Mismatches: 20, Indels: 4
0.64 0.30 0.06
Matches are distributed among these distances:
15 23 0.53
16 20 0.47
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.25
Consensus pattern (15 bp):
AAATAGAAATGATCT
Found at i:2649696 original size:16 final size:16
Alignment explanation
Indices: 2649608--2649698 Score: 57
Period size: 16 Copynumber: 5.9 Consensus size: 16
2649598 GTTAACTGAG
2649608 AATGA-CTAAAATAGA
1 AATGATCTAAAATAGA
* *
2649623 AATGATCT-AAATCGTG
1 AATGATCTAAAATAG-A
* *
2649639 AGTGAT-AAAAATAGA
1 AATGATCTAAAATAGA
* *
2649654 AATGATCT-AAATCGTG
1 AATGATCTAAAATAG-A
* *
2649670 AGTGAT-AAAAATAGA
1 AATGATCTAAAATAGA
2649685 AATGATCTAAAATA
1 AATGATCTAAAATA
2649699 TTAGTGACTA
Statistics
Matches: 53, Mismatches: 16, Indels: 13
0.65 0.20 0.16
Matches are distributed among these distances:
15 25 0.47
16 28 0.53
ACGTcount: A:0.52, C:0.07, G:0.16, T:0.25
Consensus pattern (16 bp):
AATGATCTAAAATAGA
Found at i:2649705 original size:31 final size:31
Alignment explanation
Indices: 2649615--2649695 Score: 162
Period size: 31 Copynumber: 2.6 Consensus size: 31
2649605 GAGAATGACT
2649615 AAAATAGAAATGATCTAAATCGTGAGTGATA
1 AAAATAGAAATGATCTAAATCGTGAGTGATA
2649646 AAAATAGAAATGATCTAAATCGTGAGTGATA
1 AAAATAGAAATGATCTAAATCGTGAGTGATA
2649677 AAAATAGAAATGATCTAAA
1 AAAATAGAAATGATCTAAA
2649696 ATATTAGTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.25
Consensus pattern (31 bp):
AAAATAGAAATGATCTAAATCGTGAGTGATA
Found at i:2652442 original size:14 final size:14
Alignment explanation
Indices: 2652423--2652449 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2652413 AAAAATTTAA
2652423 GCAATTAGTGATTG
1 GCAATTAGTGATTG
2652437 GCAATTAGTGATT
1 GCAATTAGTGATT
2652450 AGTTGATAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (14 bp):
GCAATTAGTGATTG
Found at i:2653014 original size:31 final size:31
Alignment explanation
Indices: 2652945--2653014 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 31
2652935 GATTGATTTA
*
2652945 AAATT-AAAGTTTCATATATACATTTGAACT
1 AAATTAAAAGTTTCATATATACAATTGAACT
* *
2652975 ACAA-TAAAAGTTTCATATATATAATTGCA-T
1 A-AATTAAAAGTTTCATATATACAATTGAACT
2653005 CAAATTAAAA
1 -AAATTAAAA
2653015 CTTGTGTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
30 5 0.15
31 28 0.85
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.36
Consensus pattern (31 bp):
AAATTAAAAGTTTCATATATACAATTGAACT
Found at i:2660548 original size:33 final size:33
Alignment explanation
Indices: 2660506--2660572 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
2660496 GTATAGTTAA
2660506 GAAAAAAAACAAAAATTAGATATAAAAATAAAT
1 GAAAAAAAACAAAAATTAGATATAAAAATAAAT
*
2660539 GAAAAAAAACGAAAATTAGATATAAAAATAAAT
1 GAAAAAAAACAAAAATTAGATATAAAAATAAAT
2660572 G
1 G
2660573 GAACATTGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (33 bp):
GAAAAAAAACAAAAATTAGATATAAAAATAAAT
Found at i:2663130 original size:27 final size:28
Alignment explanation
Indices: 2663100--2663152 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
2663090 TATATAATAC
2663100 TAATAAAATTAAAATTAAATC-ATATTT
1 TAATAAAATTAAAATTAAATCTATATTT
* *
2663127 TAATAAAATTAATATTCAATCTATAT
1 TAATAAAATTAAAATTAAATCTATAT
2663153 AAATTAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (28 bp):
TAATAAAATTAAAATTAAATCTATATTT
Found at i:2666719 original size:16 final size:16
Alignment explanation
Indices: 2666693--2666729 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
2666683 CTCCAACCCG
*
2666693 TTTGCTTTTTTTTT-T
1 TTTGTTTTTTTTTTAT
2666708 TTTGTTTTTTTTTTAT
1 TTTGTTTTTTTTTTAT
2666724 TTTGTT
1 TTTGTT
2666730 CAACGGCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.03, C:0.03, G:0.08, T:0.86
Consensus pattern (16 bp):
TTTGTTTTTTTTTTAT
Found at i:2668906 original size:2 final size:2
Alignment explanation
Indices: 2668899--2668932 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
2668889 ACTCATATTT
2668899 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2668933 ACTAATTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:2670464 original size:16 final size:15
Alignment explanation
Indices: 2670443--2670474 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2670433 ACATGTAATA
2670443 TTCTTTGTTTTTTTTT
1 TTCTTT-TTTTTTTTT
2670459 TTCTTTTTTTTTTTT
1 TTCTTTTTTTTTTTT
2670474 T
1 T
2670475 GGTGATAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (15 bp):
TTCTTTTTTTTTTTT
Found at i:2671020 original size:31 final size:31
Alignment explanation
Indices: 2670980--2671039 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
2670970 GTCATTAAAT
2670980 TATTC-AAAAATTTTCATTTAAGTCACTGAAC
1 TATTCAAAAAATTTT-ATTTAAGTCACTGAAC
*
2671011 TATTTAAAAAATTTTATTTAAGTCACTGA
1 TATTCAAAAAATTTTATTTAAGTCACTGA
2671040 GTTGTTAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (31 bp):
TATTCAAAAAATTTTATTTAAGTCACTGAAC
Found at i:2677563 original size:26 final size:25
Alignment explanation
Indices: 2677524--2677572 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
2677514 TGTTGTGTTG
* *
2677524 TGTTTTTTTTTTTTTTCATAATTATT
1 TGTTTTCTTATTTTTTC-TAATTATT
2677550 TGTTTTCTTATTTTTTCTAATTA
1 TGTTTTCTTATTTTTTCTAATTA
2677573 ATGAAATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (25 bp):
TGTTTTCTTATTTTTTCTAATTATT
Found at i:2685406 original size:88 final size:88
Alignment explanation
Indices: 2685257--2685434 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
2685247 AGCATAGAAG
2685257 TAAACAAAGGGGCAATTCGACTAAATTGCAAAAACTAAAAAGCTTAATACATAATTCAACAACAA
1 TAAACAAAGGGGCAATTCGACTAAATTGCAAAAACTAAAAAGCTTAATACATAATTCAACAACAA
2685322 CAATAATACCACTTATCAATTCC
66 CAATAATACCACTTATCAATTCC
2685345 TAAACAAAGGGGCAATTCGACTAAATTGCAAAAACTAAAAAGCTTAATACATAATTCAACAACAA
1 TAAACAAAGGGGCAATTCGACTAAATTGCAAAAACTAAAAAGCTTAATACATAATTCAACAACAA
2685410 CAATAATACCACTTATCAATTCC
66 CAATAATACCACTTATCAATTCC
2685433 TA
1 TA
2685435 GTTCATTTCA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.23
Consensus pattern (88 bp):
TAAACAAAGGGGCAATTCGACTAAATTGCAAAAACTAAAAAGCTTAATACATAATTCAACAACAA
CAATAATACCACTTATCAATTCC
Found at i:2690295 original size:22 final size:22
Alignment explanation
Indices: 2690267--2690311 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
2690257 TTGTTTACTG
*
2690267 CTGTTATGTTGCTT-TTTTGCTA
1 CTGTTATGTT-ATTGTTTTGCTA
2690289 CTGTTATGTTATTGTTTTGCTA
1 CTGTTATGTTATTGTTTTGCTA
2690311 C
1 C
2690312 CATTTCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.11, C:0.13, G:0.18, T:0.58
Consensus pattern (22 bp):
CTGTTATGTTATTGTTTTGCTA
Found at i:2693296 original size:11 final size:12
Alignment explanation
Indices: 2693273--2693305 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2693263 ATCAAGTAAC
2693273 AAATAATTATTT
1 AAATAATTATTT
2693285 AAATAA-TATTT
1 AAATAATTATTT
2693296 AAATTAATTA
1 AAA-TAATTA
2693306 ATATTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 9 0.47
13 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AAATAATTATTT
Found at i:2706201 original size:2 final size:2
Alignment explanation
Indices: 2706160--2706184 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2706150 CATCACATGG
2706160 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2706185 CACATATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2707585 original size:24 final size:23
Alignment explanation
Indices: 2707558--2707612 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 23
2707548 TAATGACTTG
2707558 AATTATTATAATTT-ATATATAATA
1 AATTATTAT-ATTTAATATATAA-A
2707582 AATT-TT-TATTTAATATATAAA
1 AATTATTATATTTAATATATAAA
2707603 AATTAATTAT
1 AATT-ATTAT
2707613 TGAAGTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
21 9 0.33
22 9 0.33
23 4 0.15
24 5 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTATTATATTTAATATATAAA
Found at i:2707767 original size:2 final size:2
Alignment explanation
Indices: 2707760--2707800 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
2707750 CAAATTCAAT
2707760 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2707801 TTCAATGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2713571 original size:2 final size:2
Alignment explanation
Indices: 2713564--2713609 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
2713554 TGAACTTCTT
2713564 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2713606 TA TA
1 TA TA
2713610 ATTTTAGATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2716581 original size:5 final size:5
Alignment explanation
Indices: 2716568--2716610 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
2716558 ACATTATATA
* *
2716568 ATAAT -TAAT ATAAT ATAAT ATAAT ATAATT ATCAT ATTAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT ATA
2716611 CCTCACTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.12
5 25 0.76
6 4 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (5 bp):
ATAAT
Found at i:2717795 original size:2 final size:2
Alignment explanation
Indices: 2717788--2717822 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2717778 AACTAAAAGA
2717788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2717823 ATTCCCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2727877 original size:4 final size:4
Alignment explanation
Indices: 2727870--2727896 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
2727860 CTCTTAACAT
2727870 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
2727897 GTTTGTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:2739531 original size:16 final size:15
Alignment explanation
Indices: 2739512--2739541 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
2739502 CTCTACAAAT
2739512 TATAAAAAATATAAAC
1 TATAAAAAAT-TAAAC
2739528 TATAAAAAATTAAA
1 TATAAAAAATTAAA
2739542 ATTTCATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
TATAAAAAATTAAAC
Found at i:2756756 original size:24 final size:25
Alignment explanation
Indices: 2756715--2756761 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
2756705 CTTTACTATT
2756715 TTAACTTTTATATCAATT-TTTTCA
1 TTAACTTTTATATCAATTATTTTCA
2756739 TTAACTTGTTATAT-AATTATTTT
1 TTAACTT-TTATATCAATTATTTT
2756762 TTCAATTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60
Consensus pattern (25 bp):
TTAACTTTTATATCAATTATTTTCA
Found at i:2756761 original size:27 final size:24
Alignment explanation
Indices: 2756715--2756765 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 24
2756705 CTTTACTATT
*
2756715 TTAACTTTTATATCAATTTTTTCA
1 TTAACTTTTATATAAATTTTTTCA
2756739 TTAACTTGTTATATAATTATTTTTTCA
1 TTAACTT-TTATATAA--ATTTTTTCA
2756766 ATTGAGTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 7 0.30
25 7 0.30
27 9 0.39
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (24 bp):
TTAACTTTTATATAAATTTTTTCA
Found at i:2762499 original size:21 final size:21
Alignment explanation
Indices: 2762473--2762513 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2762463 ATCTGCTCAA
* *
2762473 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
2762494 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
2762514 TCGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:2767060 original size:93 final size:93
Alignment explanation
Indices: 2766948--2767117 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
2766938 CCCATAAGCA
* *
2766948 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
2767013 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
2767041 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
2767106 GAGTTCGGATGC
66 GAGTTCGGATGC
2767118 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:2767114 original size:46 final size:46
Alignment explanation
Indices: 2766939--2767114 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
2766929 TGTAACCCGC
* * * *
2766939 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
2766985 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
2767035 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
2767078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
2767115 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:2769540 original size:30 final size:30
Alignment explanation
Indices: 2769496--2769584 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
2769486 CAAAGATAAC
*
2769496 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
2769525 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
2769555 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
2769585 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:2769544 original size:15 final size:14
Alignment explanation
Indices: 2769496--2769578 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
2769486 CAAAGATAAC
*
2769496 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
2769510 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
2769525 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
2769540 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
2769555 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
2769570 AAGAAACCC
1 AAGAAACCC
2769579 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:2769584 original size:15 final size:15
Alignment explanation
Indices: 2769507--2769584 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
2769497 AGAAAACCGA
2769507 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
2769522 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
2769536 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
2769551 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
2769567 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
2769582 ATA
1 ATA
2769585 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:2772649 original size:93 final size:93
Alignment explanation
Indices: 2772537--2772707 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
2772527 GCCCATAAGT
* *
2772537 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
2772602 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
2772630 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
2772695 CGAGTTCGGATGC
66 CGAGTTCGGATGC
2772708 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:2772704 original size:46 final size:46
Alignment explanation
Indices: 2772529--2772704 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
2772519 TGTAACCCGC
* * *
2772529 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
2772575 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
2772625 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
2772668 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
2772705 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:2791464 original size:3 final size:3
Alignment explanation
Indices: 2791456--2791960 Score: 135
Period size: 3 Copynumber: 164.3 Consensus size: 3
2791446 AATAAGGTGG
* * * * *
2791456 TAA TAA TAA GAC TAA TAA TAA TAA TGA TAA TAG TAA TAA TAA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** * * * * *
2791504 TAA TAA TAG TAA TGG TAA TAGCA TAA TAG TTA TAA GAAA TAA TAC TAG
1 TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TAA -TAA TAA TAA TAA
* * * *
2791552 TAG TAA TAA TAA TAA TAA T-A TAAA TAA CAA T-A TAT TCA TGAGA -AA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA T-A-A TAA
* * * * * * *
2791597 TAA CAA TAA TAA TAA TAA TAG TAA CAA TAA TAT TGA TAA TGGA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * * * * * * *
2791643 TAA TAA TAA AAA GGAG TAA TAA TAT TAG TAG TAAA TAA AAA TAG TGA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
* * * *
2791690 TAA CAA TAA TGAA -AA TAG TAA TAA TAA TAA TAA TAA TAG TAAA TAG
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* ** * * * *
2791736 TAA GGAA TGG TGA TAA TAA TGA TAA TAAA CAA TAG TAAA TAA TAA TAA
1 TAA -TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA T-AA TAA TAA TAA
* * * * *** * * * * *
2791784 TGA TAG TAA CAA AAA CGG CAA TGA TAA TAT TAA TAT TGA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * **
2791830 TAA TAA TAA T-A TAA -ACA TTGA TAA TAA TAGA AAA TAA TAA TGT TAA
1 TAA TAA TAA TAA TAA TA-A -TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * ** * *
2791876 AACA TAA TAG CAA TGG TGAA -AA TAA TAA TAA TAT TAA AAA TAA TAA
1 TA-A TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * **
2791922 TAA T-A TAC TAA TGA GGA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
2791961 GATGATGATG
Statistics
Matches: 347, Mismatches: 127, Indels: 56
0.65 0.24 0.11
Matches are distributed among these distances:
2 14 0.04
3 302 0.87
4 27 0.08
5 4 0.01
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:2791865 original size:28 final size:28
Alignment explanation
Indices: 2791807--2791868 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
2791797 AACGGCAATG
* * *
2791807 ATAATATTAATATTGATAATAAATAATA
1 ATAATATAAACATTGATAATAAATAAAA
2791835 ATAATATAAACATTGATAAT-AATAGAAA
1 ATAATATAAACATTGATAATAAATA-AAA
2791863 ATAATA
1 ATAATA
2791869 ATGTTAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (28 bp):
ATAATATAAACATTGATAATAAATAAAA
Found at i:2791965 original size:3 final size:3
Alignment explanation
Indices: 2791959--2792042 Score: 161
Period size: 3 Copynumber: 28.3 Consensus size: 3
2791949 AATAATAATA
2791959 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
2792007 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT- ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
2792043 ATAATAGTAA
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.03
3 78 0.98
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:2808295 original size:11 final size:11
Alignment explanation
Indices: 2808275--2808328 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
2808265 TTAGAATATA
*
2808275 CCCATTCCTTG
1 CCCATACCTTG
2808286 CCCATACCTTG
1 CCCATACCTTG
*
2808297 CCCATACCTTT
1 CCCATACCTTG
*
2808308 CCCATACC-TA
1 CCCATACCTTG
2808318 CCCATACCTTG
1 CCCATACCTTG
2808329 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:2811706 original size:16 final size:17
Alignment explanation
Indices: 2811668--2811708 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
2811658 TCCAAACTTG
*
2811668 AAAATAATTTAAAACTC
1 AAAATGATTTAAAACTC
*
2811685 AAAATGATTTAAAA-TT
1 AAAATGATTTAAAACTC
2811701 AAAATGAT
1 AAAATGAT
2811709 CCAAACCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (17 bp):
AAAATGATTTAAAACTC
Found at i:2819032 original size:51 final size:51
Alignment explanation
Indices: 2818958--2819071 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
2818948 CTGATCACAT
* *
2818958 TTATCACTTGTCACTGATGAGATAATTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
2819009 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* *
2819060 TTGTCGCTTGTC
1 TTATCACTTGTC
2819072 GCTTGTCACT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:2825577 original size:60 final size:61
Alignment explanation
Indices: 2825464--2825585 Score: 237
Period size: 60 Copynumber: 2.0 Consensus size: 61
2825454 ATATATATAT
2825464 ATTGACCTTAAGTAAATAGTTTTTTTTAAAAAAAAAATTAAAACAACATATGAAAACTTAA
1 ATTGACCTTAAGTAAATAGTTTTTTTTAAAAAAAAAATTAAAACAACATATGAAAACTTAA
2825525 ATTGACCTTAAGTAAATAGTTTTTTTT-AAAAAAAAATTAAAACAACATATGAAAACTTAA
1 ATTGACCTTAAGTAAATAGTTTTTTTTAAAAAAAAAATTAAAACAACATATGAAAACTTAA
2825585 A
1 A
2825586 ATAAATGATA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
60 34 0.56
61 27 0.44
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.33
Consensus pattern (61 bp):
ATTGACCTTAAGTAAATAGTTTTTTTTAAAAAAAAAATTAAAACAACATATGAAAACTTAA
Found at i:2827623 original size:15 final size:16
Alignment explanation
Indices: 2827603--2827635 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
2827593 ATATATTTTT
2827603 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
2827618 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
2827635 T
1 T
2827636 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:2827714 original size:21 final size:21
Alignment explanation
Indices: 2827681--2827739 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
2827671 GTTTTAAGAA
* *
2827681 TTGTCTTAGTATTATTTTTAT
1 TTGTTTTAATATTATTTTTAT
*
2827702 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATA-TTATTTTTAT
*
2827724 GT-TTTTAA-ATATATTT
1 TTGTTTTAATAT-TATTT
2827740 GATTTATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.03
20 5 0.16
21 15 0.48
22 10 0.32
ACGTcount: A:0.22, C:0.02, G:0.08, T:0.68
Consensus pattern (21 bp):
TTGTTTTAATATTATTTTTAT
Found at i:2827754 original size:26 final size:24
Alignment explanation
Indices: 2827710--2827758 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
2827700 ATTTGTTTTA
*
2827710 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
2827734 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
2827759 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:2833971 original size:3 final size:3
Alignment explanation
Indices: 2833939--2833984 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
2833929 TGTCTAATAC
* *
2833939 TAT TAT TTT TAT TTT TAT T-T T-T TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2833984 T
1 T
2833985 GTTAGTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (3 bp):
TAT
Found at i:2834037 original size:21 final size:21
Alignment explanation
Indices: 2833997--2834037 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2833987 TAGTATATGT
* * *
2833997 TTTATTATATATGTATGTATC
1 TTTAATATATATATACGTATC
2834018 TTTAATATATATATACGTAT
1 TTTAATATATATATACGTAT
2834038 ATATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (21 bp):
TTTAATATATATATACGTATC
Found at i:2834690 original size:26 final size:26
Alignment explanation
Indices: 2834614--2834693 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
2834604 CACGTATTTA
*
2834614 TATATGTTC-TTTTAAA-ATATCATAG
1 TATATGTTCATTTTAAATATATTAT-G
*
2834639 TATTCATG-T-ATTTT-ATTATA-TATG
1 TA-T-ATGTTCATTTTAAATATATTATG
2834663 TATATGTTCATTTTAAATATATTATG
1 TATATGTTCATTTTAAATATATTATG
2834689 TATAT
1 TATAT
2834694 ATATATATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
22 3 0.07
23 2 0.05
24 8 0.18
25 10 0.23
26 18 0.41
27 3 0.07
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (26 bp):
TATATGTTCATTTTAAATATATTATG
Found at i:2836587 original size:4 final size:4
Alignment explanation
Indices: 2836580--2836607 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
2836570 GACATTTATG
2836580 CATT CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT
2836608 GCATATCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:2841718 original size:14 final size:14
Alignment explanation
Indices: 2841699--2841747 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
2841689 CGCTGAGGTA
2841699 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
2841713 TTTTCAATTTCTGC
1 TTTTCAATTTCTGT
* * *
2841727 TTTTCAACTTATAT
1 TTTTCAATTTCTGT
2841741 TTTTCAA
1 TTTTCAA
2841748 AAAATCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:2841719 original size:73 final size:73
Alignment explanation
Indices: 2841572--2841707 Score: 254
Period size: 73 Copynumber: 1.9 Consensus size: 73
2841562 TTGTTTTCAA
*
2841572 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGA
2841637 TGCTTTTC
66 TGCTTTTC
*
2841645 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
2841708 TCTGTTTTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 61 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGA
TGCTTTTC
Found at i:2841801 original size:102 final size:101
Alignment explanation
Indices: 2841640--2842026 Score: 444
Period size: 102 Copynumber: 3.9 Consensus size: 101
2841630 CAATTGATGC
* *
2841640 TTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
2841705 ATTTCTGTTTTTCAATTTCTGCTTTTCAACTTATAT
66 ATTTCTGTTTTTCAATTTCTGCTTTTCAACTTATAT
* *
2841741 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAGGCTGGGGTATTTTC
1 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
* * * *
2841806 AATTTCTGCTTTTCAATTTCTG-TTTCTCAATTTCTGT
65 AATTTCTGTTTTTCAATTTCTGCTTT-TCAACTTATAT
* **
2841843 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTT
* *
2841908 CAATTTATGTTTTTTCAATTTATG--------C------
64 CAATTTCTG-TTTTTCAATTTCTGCTTTTCAACTTATAT
* * *
2841933 TTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTTA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
** * *
2841998 ATTTCTACTTTACAAATTCTGCTTTTCAA
66 ATTTCTGTTTTTCAATTTCTGCTTTTCAA
2842027 ATCAACTCAT
Statistics
Matches: 244, Mismatches: 29, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
87 10 0.04
88 19 0.08
90 45 0.18
101 50 0.20
102 88 0.36
103 20 0.08
104 12 0.05
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (101 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGCTTTTCAACTTATAT
Found at i:2841820 original size:14 final size:13
Alignment explanation
Indices: 2841801--2841849 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 13
2841791 GGCTGGGGTA
2841801 TTTTCAATTTCTG
1 TTTTCAATTTCTG
2841814 CTTTTCAATTTCTG
1 -TTTTCAATTTCTG
2841828 TTTCTCAATTTCTG
1 TTT-TCAATTTCTG
2841842 TTTGTCAA
1 TTT-TCAA
2841850 AAATCAACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
13 3 0.09
14 30 0.91
ACGTcount: A:0.16, C:0.18, G:0.08, T:0.57
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:2841924 original size:15 final size:16
Alignment explanation
Indices: 2841904--2841936 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
2841894 TGCTGAGGTA
2841904 TTTTCAATTTATG-TT
1 TTTTCAATTTATGCTT
2841919 TTTTCAATTTATGCTT
1 TTTTCAATTTATGCTT
2841935 TT
1 TT
2841937 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTTCAATTTATGCTT
Found at i:2841967 original size:90 final size:87
Alignment explanation
Indices: 2841815--2842059 Score: 327
Period size: 90 Copynumber: 2.8 Consensus size: 87
2841805 CAATTTCTGC
*
2841815 TTTTCAATTTCTGTTTCTCAATTTCTG-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCTGTTTTTCAATTTCTGCTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
2841879 GAGCCTC-GGCTCACATGCTGAGGTA
65 GAGCCTCAGG-GCAC--GCTGAGGTA
* * *
2841904 TTTTCAATTTATGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTT
1 TTTTCAATTTCTG-TTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
2841969 GAGCCTCAGGGCACGCTGAGGTA
65 GAGCCTCAGGGCACGCTGAGGTA
* ** * *
2841992 TTTTTAATTTCTACTTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
2842055 AGCCT
66 AGCCT
2842060 TTTAATTTCT
Statistics
Matches: 140, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
85 34 0.24
87 16 0.11
88 19 0.14
89 12 0.09
90 54 0.39
91 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (87 bp):
TTTTCAATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGGCACGCTGAGGTA
Found at i:2842096 original size:55 final size:55
Alignment explanation
Indices: 2842029--2842223 Score: 365
Period size: 55 Copynumber: 3.6 Consensus size: 55
2842019 CTTTTCAAAT
2842029 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAC
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAC
*
2842084 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC-AAAAAT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAC
*
2842138 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAAAAC
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAC
2842193 CAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCT
2842224 CAGGGCACGC
Statistics
Matches: 136, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
54 52 0.38
55 84 0.62
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (55 bp):
CAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAC
Found at i:2842203 original size:109 final size:109
Alignment explanation
Indices: 2842025--2842223 Score: 389
Period size: 109 Copynumber: 1.8 Consensus size: 109
2842015 TCTGCTTTTC
*
2842025 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAACCAACTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAAAACCAACTC
2842090 ATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
66 ATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
2842134 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAAAACCAACTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAAAACCAACTC
2842199 ATATTGCGAGAGGTGAGTTGAGCCT
66 ATATTGCGAGAGGTGAGTTGAGCCT
2842224 CAGGGCACGC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 89 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (109 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAAAACCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
Found at i:2842294 original size:75 final size:74
Alignment explanation
Indices: 2842168--2842333 Score: 255
Period size: 75 Copynumber: 2.2 Consensus size: 74
2842158 GAGTTGAGCC
*
2842168 TTTT-AATTTCTGTTTTTAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTCTGTTTTTAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
2842232 GCTAAGGTA
66 GCTAAGGTA
*
2842241 TTTTCAATTTCT-TCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGT-TTTT-AAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
2842305 ACGCTGAGGTA
64 ACGCTAAGGTA
* *
2842316 TTTTCAAGTTCCGTTTTT
1 TTTTCAATTTCTGTTTTT
2842334 TCAATTTATG
Statistics
Matches: 84, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
73 5 0.06
74 11 0.13
75 67 0.80
76 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTAAGGTA
Found at i:2842843 original size:3 final size:3
Alignment explanation
Indices: 2842811--2842859 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
2842801 TGTCTAATAC
* *
2842811 TAT TAT TTT TAT TTT TAT T-T T-T TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2842856 TAT T
1 TAT T
2842860 GTTAGTATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (3 bp):
TAT
Found at i:2842912 original size:21 final size:21
Alignment explanation
Indices: 2842872--2842912 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2842862 TAGTATATGT
* * *
2842872 TTTATTATATATGTATGTATC
1 TTTAATATATATATACGTATC
2842893 TTTAATATATATATACGTAT
1 TTTAATATATATATACGTAT
2842913 ATATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (21 bp):
TTTAATATATATATACGTATC
Found at i:2843359 original size:2 final size:2
Alignment explanation
Indices: 2843352--2843377 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2843342 AACACTATGT
2843352 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
2843378 ATACCATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2843759 original size:26 final size:26
Alignment explanation
Indices: 2843683--2843760 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
2843673 CACGTATTTA
*
2843683 TATATGTTC-TTTTAAA-ATATCATAG
1 TATATGTTCATTTTAAATATATTAT-G
*
2843708 TATTCATG-T-ATTTT-ATTATA-TATG
1 TA-T-ATGTTCATTTTAAATATATTATG
2843732 TATATGTTCATTTTAAATATATTATG
1 TATATGTTCATTTTAAATATATTATG
2843758 TAT
1 TAT
2843761 GTATATATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
22 3 0.07
23 2 0.05
24 8 0.19
25 10 0.24
26 16 0.38
27 3 0.07
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (26 bp):
TATATGTTCATTTTAAATATATTATG
Found at i:2843772 original size:19 final size:19
Alignment explanation
Indices: 2843748--2843800 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
2843738 TTCATTTTAA
2843748 ATATATTATGTATGTATAT
1 ATATATTATGTATGTATAT
2843767 ATATATTA-GTACT-TATAT
1 ATATATTATGTA-TGTATAT
*
2843785 TTAGTATTAT-TATGTA
1 ATA-TATTATGTATGTA
2843801 AACATCTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (19 bp):
ATATATTATGTATGTATAT
Found at i:2847810 original size:26 final size:26
Alignment explanation
Indices: 2847751--2847804 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
2847741 TGATACAAAT
2847751 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
2847777 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
2847803 TG
1 TG
2847805 TAAATGTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:2847823 original size:13 final size:13
Alignment explanation
Indices: 2847791--2847817 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2847781 AATGGGTTAG
2847791 GTAAATGTTTCAT
1 GTAAATGTTTCAT
2847804 GTAAATGTTTCAT
1 GTAAATGTTTCAT
2847817 G
1 G
2847818 ATAATGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (13 bp):
GTAAATGTTTCAT
Found at i:2857521 original size:15 final size:17
Alignment explanation
Indices: 2857495--2857530 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
2857485 CACAAATTTT
2857495 TTTTATTTTTTTTGTA-
1 TTTTATTTTTTTTGTAC
2857511 TTTTA-TTTTTTTGTAC
1 TTTTATTTTTTTTGTAC
2857527 TTTT
1 TTTT
2857531 TTGATCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.11, C:0.03, G:0.06, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTTTTGTAC
Found at i:2857946 original size:12 final size:12
Alignment explanation
Indices: 2857931--2857974 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
2857921 GTGAATAAAG
2857931 AAGATAAATGGA
1 AAGATAAATGGA
2857943 AAGATAAATGGA
1 AAGATAAATGGA
*
2857955 AAGATAAATGAA
1 AAGATAAATGGA
2857967 AAGATAAA
1 AAGATAAA
2857975 ACGTGGCGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (12 bp):
AAGATAAATGGA
Found at i:2862888 original size:77 final size:77
Alignment explanation
Indices: 2862761--2862914 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
2862751 CTGTTCTTTC
2862761 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
1 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
2862826 CCTAAGATTTGT
66 CCTAAGATTTGT
2862838 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
1 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
2862903 CCTAAGATTTGT
66 CCTAAGATTTGT
2862915 CCATCCTCAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (77 bp):
ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
CCTAAGATTTGT
Found at i:2866695 original size:19 final size:17
Alignment explanation
Indices: 2866671--2866725 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
2866661 TAAAAAAATC
*
2866671 AATAATTTAAACATGTAAA
1 AATAATTTAAA-ATCT-AA
2866690 AATAATTTAAAATCTAA
1 AATAATTTAAAATCTAA
2866707 AATAATTTAAAAT-TAA
1 AATAATTTAAAATCTAA
2866723 AAT
1 AAT
2866726 GATTCAAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
16 6 0.17
17 15 0.43
18 3 0.09
19 11 0.31
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (17 bp):
AATAATTTAAAATCTAA
Found at i:2871498 original size:23 final size:23
Alignment explanation
Indices: 2871471--2871514 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
2871461 GAGTAGCTTG
*
2871471 CAAATT-TAACTTGAGCTTGAATA
1 CAAATTATAA-TTAAGCTTGAATA
2871494 CAAATTATAATTAAGCTTGAA
1 CAAATTATAATTAAGCTTGAA
2871515 GTTGAGCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (23 bp):
CAAATTATAATTAAGCTTGAATA
Found at i:2877406 original size:77 final size:77
Alignment explanation
Indices: 2877279--2877432 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
2877269 CTATTCTTTC
2877279 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
1 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
2877344 CCTAAGATTTGT
66 CCTAAGATTTGT
2877356 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
1 ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
2877421 CCTAAGATTTGT
66 CCTAAGATTTGT
2877433 CATCCTCATC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (77 bp):
ATCACTATTAATAATTTCTTTTCATTGTAATAGAAAACACTGGGTAAGTGACCCGACTACAAGCA
CCTAAGATTTGT
Found at i:2879632 original size:9 final size:9
Alignment explanation
Indices: 2879618--2879657 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
2879608 CTTTTTATTT
2879618 TTATTTTTA
1 TTATTTTTA
*
2879627 TTATTTCTA
1 TTATTTTTA
*
2879636 TTATTGTTA
1 TTATTTTTA
2879645 TTATATTTTA
1 TTAT-TTTTA
2879655 TTA
1 TTA
2879658 CTATTATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (9 bp):
TTATTTTTA
Found at i:2880195 original size:2 final size:2
Alignment explanation
Indices: 2880188--2880229 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
2880178 ATATCTTTTC
2880188 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2880230 TTTAATGCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2880366 original size:12 final size:12
Alignment explanation
Indices: 2880349--2880374 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2880339 ATAAACACCC
2880349 TATACATATATA
1 TATACATATATA
2880361 TATACATATATA
1 TATACATATATA
2880373 TA
1 TA
2880375 CAATCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATACATATATA
Found at i:2903765 original size:43 final size:44
Alignment explanation
Indices: 2903618--2903881 Score: 150
Period size: 43 Copynumber: 6.0 Consensus size: 44
2903608 ATTCATAAGC
* * *
2903618 CTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACACCCTAAGCAGTAGGGTAACAGGTTGAAG-TTTACAGAT
* * * * * *** *
2903663 CTTAGCCCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA-AGAAC
1 CTTAACACCCTAAGCAGTAG-GGTAACAGGTTGAAGTTTACAG-AT
2903707 CTTAA-ACCCCTAAGCAGTAGGGTAACAGGTTG-AGTTTACAGAT
1 CTTAACA-CCCTAAGCAGTAGGGTAACAGGTTGAAGTTTACAGAT
* * ** * *
2903750 CTTAACACCCTAAGCAGTAGGGAAACAGATCAAAG-ATA-ATGAG
1 CTTAACACCCTAAGCAGTAGGGTAACAGGTTGAAGTTTACA-GAT
* * * *
2903793 CTTTATC-CCCTAAGCAGTAGGGTAAC-GAG-TCAAATTTACAGAC
1 C-TTAACACCCTAAGCAGTAGGGTAACAG-GTTGAAGTTTACAGAT
* * * * **
2903836 CTTAACCCCCTAAGTAGTAGGGTAATAGGCTGAAAATTACAGAT
1 CTTAACACCCTAAGCAGTAGGGTAACAGGTTGAAGTTTACAGAT
2903880 CT
1 CT
2903882 GGTCTCCTTG
Statistics
Matches: 165, Mismatches: 39, Indels: 31
0.70 0.17 0.13
Matches are distributed among these distances:
42 8 0.05
43 80 0.48
44 49 0.30
45 26 0.16
46 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (44 bp):
CTTAACACCCTAAGCAGTAGGGTAACAGGTTGAAGTTTACAGAT
Found at i:2903840 original size:86 final size:86
Alignment explanation
Indices: 2903617--2903857 Score: 263
Period size: 86 Copynumber: 2.8 Consensus size: 86
2903607 AATTCATAAG
* * * *
2903617 CCTTAACCCCCTAAACAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAGCCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGG-TCAA-ATTTACAGATCTTAACCCCCTAAGCAGTA
* *
2903682 GTGGAGCAGATCGAAGACGAAGAA
64 G-GGAACAGATCAAAGACGAAGAA
** * *
2903706 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTTTACAGATCTTAACACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTCAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
*
2903771 GAAACAGATCAAAGA-TAATG-A
66 G-AACAGATCAAAGACGAA-GAA
* * * * *
2903792 GCTTTATCCCCTAAGCAGTAGGGTAAC-GAGTCAAATTTACAGACCTTAACCCCCTAAGTAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAG-GTCAAATTTACAGATCTTAACCCCCTAAGCAGTAG
2903856 GG
65 GG
2903858 TAATAGGCTG
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
85 1 0.01
86 60 0.46
87 39 0.30
88 2 0.02
89 28 0.22
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (86 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTCAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
GAACAGATCAAAGACGAAGAA
Found at i:2904004 original size:221 final size:219
Alignment explanation
Indices: 2903743--2904347 Score: 944
Period size: 221 Copynumber: 2.7 Consensus size: 219
2903733 AGGTTGAGTT
2903743 TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGATAATGAGCTTTATCCCCTAAGC
1 TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGATAATGAGCTTTATCCCCTAAGC
*
2903808 AGTAGGGTAACGAGTCAAATTTACAGACCTTAACCCCCTAAGTAGTAGGGTAATAGGCTGAAAAT
66 AGTAGGGTAACGAG-CAAATTTACAGACCTTAACCCCCTAAGTAGTAGGGTAATAGGTTGAAAAT
2903873 TACAGATCTGGTCTCCTTGAAGTTGCAGTGGAACAGATCGAATCCAGCGAATCTTGTCTTCCTGA
130 TACAGATCTGGTCTCC-TGAAGTTGCAGTGGAACAGATCGAATCCAGCGAATCTTGTCTTCCTGA
2903938 AGTTGCAGTGAAGCAGATTGAAGATC
194 AGTTGCAGTGAAGCAGATTGAAGATC
2903964 TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGATAATGAGCTTTATCCCCTAAGC
1 TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGATAATGAGCTTTATCCCCTAAGC
*
2904029 AGTAGGGTAACGAGCCAAATTTACAGACCTTAACCCCTTAAGTAGTAGGGTAATAGGTTGAAAAT
66 AGTAGGGTAACGAG-CAAATTTACAGACCTTAACCCCCTAAGTAGTAGGGTAATAGGTTGAAAAT
*
2904094 TACAGATCTGGTCTCCCTGAAGTTGTAGTGGAACAGATCGAATCCAGCGAATCTTGTCTTCCTGA
130 TACAGATCTGGTCT-CCTGAAGTTGCAGTGGAACAGATCGAATCCAGCGAATCTTGTCTTCCTGA
2904159 AGTTGCAGTGAAGCAGATTGAAGATC
194 AGTTGCAGTGAAGCAGATTGAAGATC
* * * * *
2904185 TACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGATCAAA-AGTGATGGGCTTTAACCCCCTAA
1 TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGA-TAATGAGCTTT-ATCCCCTAA
* * * * * * *
2904249 ACTGTGGGGTAACAAGCTGAATTTACA-AGCCTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAA
64 GCAGTAGGGTAACGAGC-AAATTTACAGA-CCTTAACCCCCTAAGTAGTAGGGTAATAGGTTGAA
* * * *
2904313 AATCACAGATCTTGCCTTCCTGAAGTTACAGTGGA
127 AATTACAGATCTGGTC-TCCTGAAGTTGCAGTGGA
2904348 GTAGATCAAA
Statistics
Matches: 356, Mismatches: 22, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
220 1 0.00
221 264 0.74
222 90 0.25
223 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (219 bp):
TACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGATAATGAGCTTTATCCCCTAAGC
AGTAGGGTAACGAGCAAATTTACAGACCTTAACCCCCTAAGTAGTAGGGTAATAGGTTGAAAATT
ACAGATCTGGTCTCCTGAAGTTGCAGTGGAACAGATCGAATCCAGCGAATCTTGTCTTCCTGAAG
TTGCAGTGAAGCAGATTGAAGATC
Found at i:2906078 original size:9 final size:9
Alignment explanation
Indices: 2906064--2906103 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
2906054 CTTTTTATTT
2906064 TTATTTTTA
1 TTATTTTTA
*
2906073 TTATTTCTA
1 TTATTTTTA
*
2906082 TTATTGTTA
1 TTATTTTTA
2906091 TTATATTTTA
1 TTAT-TTTTA
2906101 TTA
1 TTA
2906104 CTATTATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (9 bp):
TTATTTTTA
Found at i:2906641 original size:2 final size:2
Alignment explanation
Indices: 2906634--2906663 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2906624 ATATCTTTTC
2906634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2906664 TTTAATGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2906800 original size:12 final size:12
Alignment explanation
Indices: 2906783--2906808 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2906773 ATAAACACCC
2906783 TATACATATATA
1 TATACATATATA
2906795 TATACATATATA
1 TATACATATATA
2906807 TA
1 TA
2906809 CAATCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATACATATATA
Found at i:2908246 original size:30 final size:33
Alignment explanation
Indices: 2908172--2908250 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 33
2908162 ATATTAAAAC
*
2908172 TACATATAAAGTTTGATTTAATATGTAATTTGA
1 TACATATAAACTTTGATTTAATATGTAATTTGA
2908205 TAC--ATAAACTTTGATTT-A-ATGTAA-TT-A
1 TACATATAAACTTTGATTTAATATGTAATTTGA
2908232 TACATATCAAACTTTGATT
1 TACATAT-AAACTTTGATT
2908251 ATGACTCAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 8 0.19
30 12 0.29
31 13 0.31
33 3 0.07
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (33 bp):
TACATATAAACTTTGATTTAATATGTAATTTGA
Found at i:2908876 original size:16 final size:17
Alignment explanation
Indices: 2908847--2908882 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
2908837 TTAAATTGAT
*
2908847 TTTTTTAATCTTTAAAA
1 TTTTTGAATCTTTAAAA
2908864 TTTTTGAAT-TTTAAAA
1 TTTTTGAATCTTTAAAA
2908880 TTT
1 TTT
2908883 ACTCCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTTGAATCTTTAAAA
Found at i:2912008 original size:2 final size:2
Alignment explanation
Indices: 2912001--2912027 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2911991 AGTATCTGAT
2912001 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2912028 TAAAGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2916399 original size:125 final size:125
Alignment explanation
Indices: 2916177--2916427 Score: 466
Period size: 125 Copynumber: 2.0 Consensus size: 125
2916167 CATATAAAAA
2916177 TTGAATTTTCTCAAATATTAACTCATTCTTAAACTTCATTCGTTAATAATAGTAACACAATTTCA
1 TTGAATTTTCTCAAATATTAACTCATTCTTAAACTTCATTCGTTAATAATAGTAACACAATTTCA
2916242 ACTACTTATCAATTTCAATCAAATATCATAGACTTCAATTTTCTTCACTACATCAACGTT
66 ACTACTTATCAATTTCAATCAAATATCATAGACTTCAATTTTCTTCACTACATCAACGTT
* *
2916302 TTGAATTTTCTCAAATATTAACTCGTTTTTAAACTTCATTCGTTAATAATAGTAACACAATTTCA
1 TTGAATTTTCTCAAATATTAACTCATTCTTAAACTTCATTCGTTAATAATAGTAACACAATTTCA
* *
2916367 ACTATTTATCAATTTCAATCAAATATCATAGACTTCAATTTTCTTCATTACATCAACGTT
66 ACTACTTATCAATTTCAATCAAATATCATAGACTTCAATTTTCTTCACTACATCAACGTT
2916427 T
1 T
2916428 AGTTCATGCC
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.41
Consensus pattern (125 bp):
TTGAATTTTCTCAAATATTAACTCATTCTTAAACTTCATTCGTTAATAATAGTAACACAATTTCA
ACTACTTATCAATTTCAATCAAATATCATAGACTTCAATTTTCTTCACTACATCAACGTT
Found at i:2917274 original size:50 final size:50
Alignment explanation
Indices: 2917206--2917308 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
2917196 CTACGAAAAT
2917206 AATAATAATTTTCACTATTAATTAGAGCATTAAATTATAATAGATAATTG
1 AATAATAATTTTCACTATTAATTAGAGCATTAAATTATAATAGATAATTG
2917256 AATAATAATTTTCACTATTAATTAGAGCATTAAATTATAATAGATAATTG
1 AATAATAATTTTCACTATTAATTAGAGCATTAAATTATAATAGATAATTG
2917306 AAT
1 AAT
2917309 TTTATTCAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.40
Consensus pattern (50 bp):
AATAATAATTTTCACTATTAATTAGAGCATTAAATTATAATAGATAATTG
Found at i:2918108 original size:19 final size:18
Alignment explanation
Indices: 2918081--2918116 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2918071 TTTATTCATT
*
2918081 AATTTAATAATATAATATC
1 AATTAAATAATA-AATATC
2918100 AATTAAATAATAAATAT
1 AATTAAATAATAAATAT
2918117 AATAAGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTAAATAATAAATATC
Found at i:2920789 original size:61 final size:61
Alignment explanation
Indices: 2920717--2920839 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
2920707 ATTACCATAC
2920717 ATTTATATTTATCTAATTTGTTTCATAATATATAATATAATTATAATATAATCAATACCTA
1 ATTTATATTTATCTAATTTGTTTCATAATATATAATATAATTATAATATAATCAATACCTA
2920778 ATTTATATTTATCTAATTTGTTTCATAATATATAATATAATTATAATATAATCAATACCTA
1 ATTTATATTTATCTAATTTGTTTCATAATATATAATATAATTATAATATAATCAATACCTA
2920839 A
1 A
2920840 GAAAAATCTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (61 bp):
ATTTATATTTATCTAATTTGTTTCATAATATATAATATAATTATAATATAATCAATACCTA
Found at i:2924071 original size:22 final size:23
Alignment explanation
Indices: 2924046--2924094 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
2924036 ATTTTCTTAT
* *
2924046 TATTTTC-CTCCTATTTTGCTAC
1 TATTTTCACTACTATGTTGCTAC
*
2924068 TA-TTTCACTATTATGTTGCTAC
1 TATTTTCACTACTATGTTGCTAC
2924090 TATTT
1 TATTT
2924095 GTTGTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 4 0.18
22 16 0.73
23 2 0.09
ACGTcount: A:0.18, C:0.20, G:0.06, T:0.55
Consensus pattern (23 bp):
TATTTTCACTACTATGTTGCTAC
Found at i:2930422 original size:16 final size:17
Alignment explanation
Indices: 2930388--2930431 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
2930378 ATCTAAACTG
* *
2930388 AAAATGATGCAAACTTA
1 AAAATGATTCAAACATA
2930405 AAAATGATTCAAA-ATA
1 AAAATGATTCAAACATA
2930421 AAAAT-ATTCAA
1 AAAATGATTCAA
2930432 GTAAAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 6 0.24
16 7 0.28
17 12 0.48
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.25
Consensus pattern (17 bp):
AAAATGATTCAAACATA
Found at i:2934041 original size:22 final size:22
Alignment explanation
Indices: 2933979--2934042 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 22
2933969 CAATACACAA
* *
2933979 ATTAACAATATAATAAAAAATG
1 ATTAAAAATAAAATAAAAAATG
* * * **
2934001 GTT-ATATTAAAATTTAAAATG
1 ATTAAAAATAAAATAAAAAATG
2934022 ATTAAAAATAAAATAAAAAAT
1 ATTAAAAATAAAATAAAAAAT
2934043 ATATTAATAT
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
ATTAAAAATAAAATAAAAAATG
Found at i:2934644 original size:16 final size:16
Alignment explanation
Indices: 2934600--2934645 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
2934590 TAGAGGGGAA
*
2934600 AGAAAATTAGAAGAAT
1 AGAAAATTAGAAGGAT
* *
2934616 AAAAAATT-GAAGGGT
1 AGAAAATTAGAAGGAT
2934631 AGAAAATTAGAAGGA
1 AGAAAATTAGAAGGA
2934646 AAGATGTGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.17
Consensus pattern (16 bp):
AGAAAATTAGAAGGAT
Found at i:2937231 original size:12 final size:12
Alignment explanation
Indices: 2937214--2937240 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2937204 CTGATCAACC
2937214 TAAATCCAAATT
1 TAAATCCAAATT
2937226 TAAATCCAAATT
1 TAAATCCAAATT
2937238 TAA
1 TAA
2937241 GTTCCATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAATCCAAATT
Found at i:2937644 original size:13 final size:13
Alignment explanation
Indices: 2937626--2937654 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2937616 TTTAATTTTG
2937626 AATTTGAAAATAA
1 AATTTGAAAATAA
2937639 AATTTGAAAATAA
1 AATTTGAAAATAA
2937652 AAT
1 AAT
2937655 CTTTGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (13 bp):
AATTTGAAAATAA
Found at i:2944097 original size:59 final size:59
Alignment explanation
Indices: 2944021--2944141 Score: 199
Period size: 59 Copynumber: 2.1 Consensus size: 59
2944011 TTATTCATTT
* *
2944021 CCCCTTTCTCCCCAGTTTATTTCCCC-CATTTTCCCTAATCCGAATCCCTAAAATAATCA
1 CCCCCTTCTCCCCAGTTTATTTCCCCAC-TTTCCCCTAATCCGAATCCCTAAAATAATCA
*
2944080 CCCCCTTCTCTCCAGTTTATTTCCCCACTTTCCCCTAATCCGAATCCCTAAAATAATCA
1 CCCCCTTCTCCCCAGTTTATTTCCCCACTTTCCCCTAATCCGAATCCCTAAAATAATCA
2944139 CCC
1 CCC
2944142 ATTTTCCCCC
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 57 0.98
60 1 0.02
ACGTcount: A:0.23, C:0.41, G:0.03, T:0.32
Consensus pattern (59 bp):
CCCCCTTCTCCCCAGTTTATTTCCCCACTTTCCCCTAATCCGAATCCCTAAAATAATCA
Found at i:2944424 original size:9 final size:8
Alignment explanation
Indices: 2944406--2944481 Score: 54
Period size: 8 Copynumber: 9.9 Consensus size: 8
2944396 TTTATATGAT
2944406 AATTTAAA
1 AATTTAAA
2944414 AATTATAAA
1 AATT-TAAA
*
2944423 AATCTTCAA
1 AAT-TTAAA
2944432 AA---AAA
1 AATTTAAA
*
2944437 ATTTTAAA
1 AATTTAAA
2944445 AA-TTAAA
1 AATTTAAA
2944452 AA-TTAAA
1 AATTTAAA
*
2944459 AATTAAAA
1 AATTTAAA
*
2944467 AACTTAAA
1 AATTTAAA
*
2944475 TATTTAA
1 AATTTAA
2944482 TATTTAATAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
5 3 0.06
7 14 0.26
8 23 0.43
9 12 0.23
10 1 0.02
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (8 bp):
AATTTAAA
Found at i:2944459 original size:6 final size:7
Alignment explanation
Indices: 2944440--2944467 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
2944430 AAAAAAAATT
2944440 TTAAAAA
1 TTAAAAA
2944447 TTAAAAA
1 TTAAAAA
2944454 TTAAAAA
1 TTAAAAA
2944461 TTAAAAA
1 TTAAAAA
2944468 ACTTAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:2944745 original size:41 final size:40
Alignment explanation
Indices: 2944647--2944746 Score: 110
Period size: 41 Copynumber: 2.5 Consensus size: 40
2944637 GTTTTTGGAG
*
2944647 AAAACGCCGAAAAAATTAAACTATAATTACGTTTTTACTA
1 AAAACGCCGAAAAAATTAAACTATAATGACGTTTTTACTA
** * * * * *
2944687 AAAATACCTTAACAAATTGAGCTATAATGACGTTTTTATTA
1 AAAACGCC-GAAAAAATTAAACTATAATGACGTTTTTACTA
2944728 AAAACGCCGCAAAAAATTA
1 AAAACGCCG-AAAAAATTA
2944747 TTATTTAAAA
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
40 6 0.13
41 39 0.87
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (40 bp):
AAAACGCCGAAAAAATTAAACTATAATGACGTTTTTACTA
Found at i:2948647 original size:46 final size:46
Alignment explanation
Indices: 2948592--2948772 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
2948582 TAGGATGGTT
2948592 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
2948638 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
2948684 TAGGCATCCTAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
2948731 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
2948773 GCGGGTTACA
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:2948753 original size:93 final size:93
Alignment explanation
Indices: 2948594--2948764 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
2948584 GGATGGTTGA
* *
2948594 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
2948659 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
2948687 GCATCCTAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
2948752 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
2948765 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:2951461 original size:48 final size:43
Alignment explanation
Indices: 2951405--2951493 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 43
2951395 TGCTTTATTA
2951405 TTTTGATTCTATATTTATATTTAATCTAATTTTTATTATTTATTTTAG
1 TTTTGATTCTATATTTATATTT--T-T-ATTTTTATT-TTTATTTTAG
*
2951453 TTTTGATTCTATATTTTTATTTTTATTTTTATTTTTATTTT
1 TTTTGATTCTATATTTATATTTTTATTTTTATTTTTATTTT
2951494 TATTTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
43 8 0.20
44 9 0.22
45 1 0.03
46 1 0.03
48 21 0.52
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (43 bp):
TTTTGATTCTATATTTATATTTTTATTTTTATTTTTATTTTAG
Found at i:2951511 original size:6 final size:6
Alignment explanation
Indices: 2951433--2951510 Score: 95
Period size: 6 Copynumber: 12.7 Consensus size: 6
2951423 ATTTAATCTA
* *
2951433 ATTTTT ATTATTT A-TTTT AGTTTTG ATTCTAT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATT-TTT ATTTTT A-TTTTT ATT-TTT ATTTTT ATTTTT ATTTTT
*
2951483 ATTTTT ATTTTT ATTTTT ATTTGT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
2951511 GATAATGAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
5 4 0.06
6 47 0.75
7 12 0.19
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:2951635 original size:29 final size:30
Alignment explanation
Indices: 2951587--2951645 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
2951577 TAATGAATTT
**
2951587 TAATTTTTTTTATATTTTTCATGACCTTTA
1 TAATTTTTTTTATAAATTTCATGACCTTTA
2951617 TAATTTTTTTT-TAAATTTCATGACCTTTA
1 TAATTTTTTTTATAAATTTCATGACCTTTA
2951646 GCGACGTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.61
Consensus pattern (30 bp):
TAATTTTTTTTATAAATTTCATGACCTTTA
Found at i:2951696 original size:42 final size:43
Alignment explanation
Indices: 2951635--2951739 Score: 176
Period size: 42 Copynumber: 2.5 Consensus size: 43
2951625 TTTTAAATTT
*
2951635 CATGACCTTTAGCGACGTTTGTGGGAGAAGCATCACTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAGAAGCATCACTAAAGGC
* *
2951678 CATGACC-TTAGCGGCGTTTGTGGGAGAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAGAAGCATCACTAAAGGC
2951720 CATGACCTTTAGCGGCGTTT
1 CATGACCTTTAGCGGCGTTT
2951740 TTTCAAATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 39 0.67
43 19 0.33
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGGGAGAAGCATCACTAAAGGC
Found at i:2952271 original size:44 final size:44
Alignment explanation
Indices: 2952204--2952293 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
2952194 TTTTTGTTTA
*
2952204 CACCCTCTCAAGCTTGCATTTAGACCGTCCGCCACTTCGGCTTG
1 CACCCACTCAAGCTTGCATTTAGACCGTCCGCCACTTCGGCTTG
* * *
2952248 CACCCACTCAGGCTT-CTATTTAGACTGTCTGCCACTTCGGCTTG
1 CACCCACTCAAGCTTGC-ATTTAGACCGTCCGCCACTTCGGCTTG
2952292 CA
1 CA
2952294 ATTCGACAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.98
ACGTcount: A:0.17, C:0.37, G:0.18, T:0.29
Consensus pattern (44 bp):
CACCCACTCAAGCTTGCATTTAGACCGTCCGCCACTTCGGCTTG
Found at i:2954862 original size:14 final size:14
Alignment explanation
Indices: 2954843--2954872 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2954833 TATTTTCAAG
2954843 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
2954857 ATAGATTCACGCAT
1 ATAGATTAACGCAT
2954871 AT
1 AT
2954873 TTATGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:2957547 original size:25 final size:27
Alignment explanation
Indices: 2957519--2957570 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
2957509 AATCAGTAAA
*
2957519 ATTTTTCTATCA-AT-ATTTTCATACG
1 ATTTTCCTATCATATAATTTTCATACG
2957544 ATTTTCCTATCATATCAATTTTCATAC
1 ATTTTCCTATCATAT-AATTTTCATAC
2957571 AAAAATATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
28 10 0.43
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (27 bp):
ATTTTCCTATCATATAATTTTCATACG
Found at i:2958328 original size:18 final size:18
Alignment explanation
Indices: 2958281--2958329 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
2958271 TTCATGGCTA
*
2958281 TGGTCAAAATTATAATGC
1 TGGTCAAAATTGTAATGC
2958299 TGGTCAAAATTGTAATGC
1 TGGTCAAAATTGTAATGC
2958317 TGGTCAAAATTGT
1 TGGTCAAAATTGT
2958330 TCTCTGCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (18 bp):
TGGTCAAAATTGTAATGC
Found at i:2963203 original size:29 final size:30
Alignment explanation
Indices: 2963127--2963204 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
2963117 TTTAACGGAA
* *
2963127 GAGTGACTAAAATATTAAATTTTGATAACGT
1 GAGTGACTAAAATA-GAAATTTTGATAACCT
* * *
2963158 TAGTAACTAAAATAGAAATTTTTA-AACCT
1 GAGTGACTAAAATAGAAATTTTGATAACCT
*
2963187 GAGTGACTAAAACAGAAA
1 GAGTGACTAAAATAGAAA
2963205 CACACTAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 19 0.49
30 8 0.21
31 12 0.31
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.29
Consensus pattern (30 bp):
GAGTGACTAAAATAGAAATTTTGATAACCT
Found at i:2964258 original size:2 final size:2
Alignment explanation
Indices: 2964251--2964288 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
2964241 GACCGTACCT
2964251 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2964289 ATTGAACTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.