Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 90 of 378
Found at i:24316986 original size:23 final size:23
Alignment explanation
Indices: 24316956--24317001 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
24316946 AGGACTGTAT
24316956 GATATTCTTTGATGTATTTTCTA
1 GATATTCTTTGATGTATTTTCTA
24316979 GATATTCTTTGATGTATTTTCTA
1 GATATTCTTTGATGTATTTTCTA
24317002 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (23 bp):
GATATTCTTTGATGTATTTTCTA
Found at i:24318452 original size:20 final size:21
Alignment explanation
Indices: 24318415--24318453 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24318405 TTCAGTTCAA
*
24318415 AGGGAGACCAAGAAAAGAAAG
1 AGGGAGAACAAGAAAAGAAAG
24318436 AGGGAGAACAA-AAAAGAA
1 AGGGAGAACAAGAAAAGAA
24318454 CAATTGCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (21 bp):
AGGGAGAACAAGAAAAGAAAG
Found at i:24323441 original size:27 final size:27
Alignment explanation
Indices: 24323396--24323461 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
24323386 ATCCTGTTAG
*
24323396 CCTTTGTGGTGTACTCTGAAAGGAATA
1 CCTTTGTGGCGTACTCTGAAAGGAATA
* *
24323423 CCTTTGTGGCGTA-TCCTGAATGGATTA
1 CCTTTGTGGCGTACT-CTGAAAGGAATA
*
24323450 CTTTTGTGGCGT
1 CCTTTGTGGCGT
24323462 GTTCTATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.38
Consensus pattern (27 bp):
CCTTTGTGGCGTACTCTGAAAGGAATA
Found at i:24334738 original size:16 final size:16
Alignment explanation
Indices: 24334713--24334743 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24334703 ATGGAAATGA
24334713 AATTTCTTTTTCTTTT
1 AATTTCTTTTTCTTTT
*
24334729 AATTTTTTTTTCTTT
1 AATTTCTTTTTCTTT
24334744 CCTACCAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (16 bp):
AATTTCTTTTTCTTTT
Found at i:24339046 original size:18 final size:18
Alignment explanation
Indices: 24339023--24339060 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
24339013 ATTCAGTGTA
24339023 AATAATCTAAAGAATTTG
1 AATAATCTAAAGAATTTG
24339041 AATAATCTAAAGAATTTG
1 AATAATCTAAAGAATTTG
24339059 AA
1 AA
24339061 GGAACAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (18 bp):
AATAATCTAAAGAATTTG
Found at i:24348557 original size:18 final size:19
Alignment explanation
Indices: 24348523--24348562 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
24348513 AACTTTATAC
*
24348523 TTTTTAAAATTAATTTTTA
1 TTTTTAAAATTAATTTTAA
*
24348542 TTTTTAAAA-TATTTTTAA
1 TTTTTAAAATTAATTTTAA
24348560 TTT
1 TTT
24348563 ATGTTTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTAAAATTAATTTTAA
Found at i:24349529 original size:57 final size:58
Alignment explanation
Indices: 24349460--24349581 Score: 185
Period size: 57 Copynumber: 2.1 Consensus size: 58
24349450 TTCCAGGTCA
* *
24349460 TTTTTTATTTTCATTTTGGAGAAAACCACATTT-ATTTCC-AAATGTTTTCATTTCTCC
1 TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAAAT-TTCTCATTTCTCC
*
24349517 TTTTTCATTTTCATTTTGGAGAAAACCATATTTCATTTCCAAAATTTCTCATTTCTCC
1 TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAAATTTCTCATTTCTCC
*
24349575 ATTTTCA
1 TTTTTCA
24349582 CCATTTTTGT
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
57 31 0.53
58 24 0.41
59 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (58 bp):
TTTTTCATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAAATTTCTCATTTCTCC
Found at i:24354159 original size:2 final size:2
Alignment explanation
Indices: 24354152--24354192 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
24354142 AAGTATGTGC
24354152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24354193 AGCTAAAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24366584 original size:26 final size:26
Alignment explanation
Indices: 24366534--24366589 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
24366524 CTCAAAAAAA
*
24366534 ATTTCTTTTGATTTTATTTTCAATTTT
1 ATTTCTTTTGATTTTATTCTCAA-TTT
24366561 ATTT-TTTTGATTTTGATTCT-AATTT
1 ATTTCTTTTGATTTT-ATTCTCAATTT
24366586 ATTT
1 ATTT
24366590 AAAAATCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 7 0.26
26 12 0.44
27 8 0.30
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (26 bp):
ATTTCTTTTGATTTTATTCTCAATTT
Found at i:24370378 original size:11 final size:13
Alignment explanation
Indices: 24370353--24370382 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24370343 ACCAATTTTA
24370353 ATATTAATTATAT
1 ATATTAATTATAT
*
24370366 ATATTAATAATAT
1 ATATTAATTATAT
24370379 ATAT
1 ATAT
24370383 GAGGGTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATTAATTATAT
Found at i:24373984 original size:27 final size:27
Alignment explanation
Indices: 24373883--24373987 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
24373873 AGGAAGCGTC
* *
24373883 CTGGTGGCTATGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
24373910 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
24373937 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
24373965 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
24373988 TTTCTGGCAG
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.74
28 17 0.24
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:24373987 original size:54 final size:54
Alignment explanation
Indices: 24373883--24373994 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
24373873 AGGAAGCGTC
*
24373883 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
24373937 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTTTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
24373991 CTGG
1 CTGG
24373995 CAGCCACGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:24376072 original size:26 final size:26
Alignment explanation
Indices: 24376043--24376202 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
24376033 TGGTACAAAT
24376043 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24376069 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24376095 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
24376121 TGATAATGGATTAGGCAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24376147 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24376173 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24376199 TGAT
1 TGAT
24376203 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24376105 original size:52 final size:52
Alignment explanation
Indices: 24376043--24376202 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
24376033 TGGTACAAAT
24376043 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
24376095 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGCAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
24376147 TGATAATGGGTTAGGTAAATGTTCTATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
24376199 TGAT
1 TGAT
24376203 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:24376332 original size:42 final size:42
Alignment explanation
Indices: 24376281--24376364 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
24376271 GGGTGAAAAG
24376281 AACAAAGTTTTGTCCATCTTTGTTCATCATAGCCAAAAGTTA
1 AACAAAGTTTTGTCCATCTTTGTTCATCATAGCCAAAAGTTA
*
24376323 AACAAAGTTTTGTCCATCTTTGTTCATCATAGCCGAAAGTTA
1 AACAAAGTTTTGTCCATCTTTGTTCATCATAGCCAAAAGTTA
24376365 GAAAAGAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (42 bp):
AACAAAGTTTTGTCCATCTTTGTTCATCATAGCCAAAAGTTA
Found at i:24377746 original size:26 final size:26
Alignment explanation
Indices: 24377716--24377768 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24377706 TTTATAGTTT
*
24377716 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
24377742 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
24377768 T
1 T
24377769 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:24379447 original size:12 final size:12
Alignment explanation
Indices: 24379430--24379460 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
24379420 ATTCGGGGAA
24379430 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
24379442 GAGGCCGTGGTT
1 GAGGCCGTGGTC
24379454 GAGGCCG
1 GAGGCCG
24379461 AGGTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.52, T:0.16
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:24382172 original size:15 final size:15
Alignment explanation
Indices: 24382152--24382182 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24382142 GATGTGTACT
24382152 GATGCAAGAGGGTAA
1 GATGCAAGAGGGTAA
24382167 GATGCAAGAGGGTAA
1 GATGCAAGAGGGTAA
24382182 G
1 G
24382183 GTGGTCGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.42, T:0.13
Consensus pattern (15 bp):
GATGCAAGAGGGTAA
Found at i:24384373 original size:26 final size:26
Alignment explanation
Indices: 24384344--24384450 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
24384334 TGGTACAAAT
24384344 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24384370 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24384396 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24384421 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24384447 TGAT
1 TGAT
24384451 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 24 0.32
26 51 0.68
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24384446 original size:51 final size:52
Alignment explanation
Indices: 24384344--24384450 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
24384334 TGGTACAAAT
24384344 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
24384396 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
24384447 TGAT
1 TGAT
24384451 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 30 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:24389455 original size:3 final size:3
Alignment explanation
Indices: 24389449--24389530 Score: 62
Period size: 3 Copynumber: 26.7 Consensus size: 3
24389439 TGTTGTTGTC
* *
24389449 ATT ATT ATT ATT CCTG ATT -TT ATT ATT ATT CATGT ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT ATT
* *
24389496 CTT CGTT -TT CATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT -ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT AT
24389531 GCTTTCATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
2 6 0.09
3 49 0.75
4 9 0.14
5 1 0.02
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:24389550 original size:39 final size:39
Alignment explanation
Indices: 24389467--24389552 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 39
24389457 TATTCCTGAT
* *
24389467 TTTATTATTATTCATGTATTATTATTATTCTTCGTTTTC
1 TTTATTATTATTCATGTATTATTATTATGCTTCATTTTC
*
24389506 ATTATTATTATT-AT-TATTATT-TTATGCTTTCATATTTAC
1 TTTATTATTATTCATGTATTATTATTATGC-TTCAT-TTT-C
24389545 TTTATTAT
1 TTTATTAT
24389553 ATATACATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
36 5 0.12
37 11 0.28
38 5 0.12
39 19 0.47
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.64
Consensus pattern (39 bp):
TTTATTATTATTCATGTATTATTATTATGCTTCATTTTC
Found at i:24394310 original size:48 final size:48
Alignment explanation
Indices: 24394255--24394575 Score: 311
Period size: 48 Copynumber: 6.7 Consensus size: 48
24394245 AGGGTGAATT
* * *
24394255 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
24394303 GCCGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCGTCTC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA-G
** * * ** *
24394351 GCCGATGTAATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
** * * * *
24394399 GCCGATGCCATGTCCCAGACATTATCTTACACTAGCGCATATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
24394447 GCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
24394495 GCTGATGCTATGTCTCAGACATGGTCTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
*
24394543 GCAGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
24394576 GGCACTCATG
Statistics
Matches: 216, Mismatches: 55, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
47 1 0.00
48 215 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
Found at i:24394427 original size:96 final size:96
Alignment explanation
Indices: 24394254--24394587 Score: 409
Period size: 96 Copynumber: 3.5 Consensus size: 96
24394244 GAGGGTGAAT
* * * * *
24394254 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
* * * * * *
24394319 AAACATGGTCTTACACTAACTCTCGTCTCAT
66 AGACATGGTCTTACACTAGCACTCATATCAA
** ***
24394350 TGCCGATGTAATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
** *
24394415 AGACATTATCTTACACTAGCGCAT-ATATCAA
66 AGACATGGTCTTACACTAGCAC-TCATATCAA
* * * * *
24394446 TGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTGTGGCTGATGCTATGTCTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
*
24394511 AGACATGGTCTTACACTAGCACACATATCAA
66 AGACATGGTCTTACACTAGCACTCATATCAA
* *
24394542 TGCAGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTC
24394588 ACCCAAATGT
Statistics
Matches: 202, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
96 201 1.00
97 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTCGTGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCACTCATATCAA
Found at i:24394515 original size:144 final size:143
Alignment explanation
Indices: 24394254--24394575 Score: 369
Period size: 144 Copynumber: 2.2 Consensus size: 143
24394244 GAGGGTGAAT
* * * * *
24394254 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCC
* *
24394319 AAACATGGTCTTACACTAACTCTCGTCTCATTGCCGATGTAATGTCCCAGACATGGTCTTACACT
66 AAACATGGTCTTACACTAACTCTCATCTCATGGCCGATGTAATGTCCCAGACATGGTCTTACACT
* * * *
24394384 GGCTCTCATA-AGG
131 AGCACACATACA-A
** * * *
24394397 TGGCCGATGCCATGTCCCAGACATTATCTTACACTAGCGCATATATCAATGCCGATGCTATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCC
* ** * ** * *
24394462 CAGACATGGTCTTACACTGGCTCTCATGTTGTGGCTGATGCT-ATGTCTCAGACATGGTCTTACA
65 CAAACATGGTCTTACACTAACTCTCATCTCATGGCCGATG-TAATGTCCCAGACATGGTCTTACA
24394526 CTAGCACACATATCAA
129 CTAGCACACATA-CAA
*
24394542 TGCAGATGCCATGTCCCAGACATGGTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
24394576 GGCACTCATG
Statistics
Matches: 148, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
143 1 0.01
144 144 0.97
145 2 0.01
146 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (143 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCC
AAACATGGTCTTACACTAACTCTCATCTCATGGCCGATGTAATGTCCCAGACATGGTCTTACACT
AGCACACATACAA
Found at i:24395600 original size:28 final size:28
Alignment explanation
Indices: 24395569--24395625 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
24395559 TAGCTAGTAG
24395569 AACAAAACTTTCACACTTTATGCGATTT
1 AACAAAACTTTCACACTTTATGCGATTT
*
24395597 AACAAAACTTTCGCACTTTATGCGATTT
1 AACAAAACTTTCACACTTTATGCGATTT
24395625 A
1 A
24395626 GTCTTTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (28 bp):
AACAAAACTTTCACACTTTATGCGATTT
Found at i:24398601 original size:29 final size:29
Alignment explanation
Indices: 24398568--24398668 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
24398558 GACGAGATCA
24398568 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
24398597 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
** * *
24398626 GCACTAAGTGTGCAAGCTGGAAAAATACG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
**
24398655 GCACTGGGTGTGCG
1 GCACTAAGTGTGCG
24398669 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GCACTAAGTGTGCGTGCTGGAAATATATG
Found at i:24406452 original size:27 final size:27
Alignment explanation
Indices: 24406420--24406515 Score: 165
Period size: 27 Copynumber: 3.5 Consensus size: 27
24406410 TGACGAGATC
24406420 GGCACTAAGTGTGTGCTGGAAATATAT
1 GGCACTAAGTGTGTGCTGGAAATATAT
*
24406447 GGCACTAAGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGTGCTGGAAATATAT
24406474 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGT--GTGCTGGAAATATAT
24406503 GGCACTAAGTGTG
1 GGCACTAAGTGTG
24406516 CAAGCTGGAA
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
27 38 0.58
29 27 0.42
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (27 bp):
GGCACTAAGTGTGTGCTGGAAATATAT
Found at i:24406488 original size:29 final size:29
Alignment explanation
Indices: 24406420--24406546 Score: 172
Period size: 29 Copynumber: 4.5 Consensus size: 29
24406410 TGACGAGATC
24406420 GGCACTAAGTGT--GTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
24406447 GGCACTAA--GTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
24406474 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
24406503 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
24406532 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
24406547 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
25 2 0.02
27 31 0.35
29 56 0.63
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:24409366 original size:71 final size:72
Alignment explanation
Indices: 24409241--24409405 Score: 323
Period size: 71 Copynumber: 2.3 Consensus size: 72
24409231 CGATTTGTCT
24409241 CGTAGCTCTCTTGTCTACATGGTGTCCGTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
24409306 TCTTTCA
66 TCTTTCA
24409313 CGTAGCTCTCTTGTCTACATGGTGTCC-TTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
24409377 TCTTTCA
66 TCTTTCA
24409384 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24409406 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 66 0.71
72 27 0.29
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (72 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
TCTTTCA
Found at i:24409443 original size:71 final size:70
Alignment explanation
Indices: 24409241--24409439 Score: 251
Period size: 71 Copynumber: 2.8 Consensus size: 70
24409231 CGATTTGTCT
* * * *
24409241 CGTAGCTCTCTTGTCTACATGGTGTCCGTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTAC-AT-ACTTCGAATCACACATGCGACCTAGCTACATTTA
24409306 TCTTTCA
64 TCTTTCA
* * * *
24409313 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24409378 CTTTCA
65 CTTTCA
* *
24409384 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24409440 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 69 0.57
72 27 0.22
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24416388 original size:71 final size:71
Alignment explanation
Indices: 24416305--24416468 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
24416295 CGATTTGTCT
24416305 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
24416370 CTTTCA
66 CTTTCA
* *
24416376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
24416441 CTTTCA
66 CTTTCA
24416447 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24416469 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:24416506 original size:71 final size:70
Alignment explanation
Indices: 24416305--24416502 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
24416295 CGATTTGTCT
* * * * *
24416305 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24416370 CTTTCA
65 CTTTCA
* * * *
24416376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24416441 CTTTCA
65 CTTTCA
* *
24416447 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24416503 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24417877 original size:28 final size:28
Alignment explanation
Indices: 24417845--24417943 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
24417835 GCAATAAGCC
*
24417845 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCGAACT
*
24417873 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCGAACT
* * * *
24417901 TGCACACTTCGTGCTATATAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCGAACT
24417930 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24417944 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
28 43 0.72
29 17 0.28
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCGAACT
Found at i:24419487 original size:42 final size:42
Alignment explanation
Indices: 24419395--24419543 Score: 165
Period size: 43 Copynumber: 3.5 Consensus size: 42
24419385 CAATGGCAAC
* * * **
24419395 GTCCCAGACGTGATCTTACATGTAATCAAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGAAATCAAATA-CGATGCCAAT
* *
24419438 GTCCCAGACAGGGTCATACATGAAATCAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATACGATGCCAAT
* * *
24419480 ATCCCAGACATGGTCTTACAGGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAGACATGGTCTTACATG-AAATCA-AA-TACGATGCCAAT
24419524 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
24419544 CGAGAACACA
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.29
43 33 0.37
44 30 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATACGATGCCAAT
Found at i:24419522 original size:44 final size:42
Alignment explanation
Indices: 24419395--24419543 Score: 158
Period size: 44 Copynumber: 3.5 Consensus size: 42
24419385 CAATGGCAAC
* * **
24419395 GTCCCAGACGTGATCTTACATGT-AATCAAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAAATC-AA-ATCGATGCCAAT
* *
24419438 GTCCCAGACAGGGTCATACATG-AAATCAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAATCAAAT-CGATGCCAAT
* * *
24419480 ATCCCAGACATGGTCTTACAGGTAAATCATAAGTCGATGCCAAC
1 GTCCCAGACATGGTCTTACATGTAAATCA-AA-TCGATGCCAAT
24419524 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
24419544 CGAGAACACA
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 28 0.31
43 28 0.31
44 30 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAAATCAAATCGATGCCAAT
Found at i:24425226 original size:18 final size:18
Alignment explanation
Indices: 24425203--24425245 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
24425193 CTTGGCCCAT
*
24425203 TGCAGTAACAGTAAACAA
1 TGCAGTAACAGCAAACAA
*
24425221 TGCAGTAACAGCAAACAT
1 TGCAGTAACAGCAAACAA
24425239 TGCAGTA
1 TGCAGTA
24425246 CCGGTAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (18 bp):
TGCAGTAACAGCAAACAA
Found at i:24425590 original size:27 final size:27
Alignment explanation
Indices: 24425536--24425670 Score: 130
Period size: 27 Copynumber: 5.0 Consensus size: 27
24425526 AAACATACAT
* * **
24425536 CACATAGGGGAAAAATAGTCATCCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
24425563 CACATAAGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
24425590 CTCATAAGGGCAAAACT-GTCTTTTTAC
1 CACATAAGGGCAAAA-TAGTCATTTTAC
* * * *
24425617 CATATAAGGGCAAAATCGTTATTTTAA
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
24425644 CACATAATGGCAAAACAGTC-TTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
24425670 C
1 C
24425671 TTACAGGGGT
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
26 7 0.08
27 79 0.91
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:24425624 original size:54 final size:54
Alignment explanation
Indices: 24425560--24425667 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
24425550 ATAGTCATCC
* * *
24425560 TACCACATAAGGGCAAAATAATCATTTTACCTCATAAGGGCAAAACTGTCTTTT
1 TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
* ** * *
24425614 TACCATATAAGGGCAAAATCGTTATTTTAACACATAATGGCAAAACAGTCTTTT
1 TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
24425668 ACCTTACAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (54 bp):
TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
Found at i:24425717 original size:27 final size:27
Alignment explanation
Indices: 24425676--24425854 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
24425666 TTACCTTACA
* *
24425676 GGGGTATTACAGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
**
24425703 GGGCAATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
* * *
24425730 GAGGTATATCGGTCATTTTACCTTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
* * * *
24425757 GGGGTGTTTTGGTCATTTTTCCCTATA
1 GGGGTATTTCGGTCATTTTACCCTATG
* *
24425784 AGGGTATTTCAGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
*
24425811 GGGGTATTTCGATCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
24425838 GGGGTATTTCGGTCATT
1 GGGGTATTTCGGTCATT
24425855 ATTTCACCCC
Statistics
Matches: 126, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.18, C:0.17, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCGGTCATTTTACCCTATG
Found at i:24427712 original size:40 final size:40
Alignment explanation
Indices: 24427573--24427683 Score: 168
Period size: 40 Copynumber: 2.8 Consensus size: 40
24427563 CATATCCACA
* * *
24427573 TGCACGAATGCCTTGGGGTCTTAGCCCGGATAGAACGACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATTGAACAACT
* * *
24427613 TGCACAAATGCCTTCGGGTATTAGCCCGGATTTAACAACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATTGAACAACT
24427653 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT
24427684 GTGGTCACTA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (40 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATTGAACAACT
Found at i:24431744 original size:43 final size:43
Alignment explanation
Indices: 24431691--24431862 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
24431681 CATAAGATTC
* **
24431691 CGATATGTGATTTCGTGTAACTCCACGTCTAGGACATTGGCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
* * * * *
24431734 CGATTTGTGATTTGCGTGTAAGACCATGTCTGGGACATTAGCAT
1 CGATATGTGATTT-CATGTAAGACCACGTCTAGGACATTGGCAT
* * * ** * * *
24431778 CG-TTTATGAGTTCATGTAAGACCTTGTTTCGGACAGTGGCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
* *
24431820 CGATATGTGATTTCATTTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
24431863 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 26 0.25
43 50 0.49
44 27 0.26
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
Found at i:24437196 original size:40 final size:40
Alignment explanation
Indices: 24437011--24437236 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
24437001 TCGAATGATG
* * * * * *
24437011 TCCGGGTTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
24437051 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
24437091 TCCGGACTAAGAT-ACGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24437131 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24437171 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24437212 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24437237 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24443411 original size:79 final size:82
Alignment explanation
Indices: 24443271--24443455 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
24443261 TCGAATGATG
* * *
24443271 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
24443335 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
24443351 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
24443413 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
24443431 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24443456 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:24443463 original size:40 final size:40
Alignment explanation
Indices: 24443272--24443463 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
24443262 CGAATGATGT
* * * * *
24443272 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
24443312 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
24443352 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
24443391 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
24443431 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
24443464 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:24443486 original size:79 final size:79
Alignment explanation
Indices: 24443271--24443488 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
24443261 TCGAATGATG
* * * * ** *
24443271 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
24443334 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
24443351 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
24443416 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
24443431 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
24443489 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:24451387 original size:39 final size:39
Alignment explanation
Indices: 24451289--24451479 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
24451279 CGAATGATGT
* * * *
24451289 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * * *
24451329 CTGGTCTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
24451368 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
24451407 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
24451448 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
24451480 CGTTATATCC
Statistics
Matches: 121, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:24451428 original size:79 final size:82
Alignment explanation
Indices: 24451288--24451472 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
24451278 TCGAATGATG
* * * *
24451288 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGTCTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCGGGTCTAAGATCCGAAGGCATT
*
24451352 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
*
24451368 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGT-TAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAA-CCGGGTCTAAGAT-CCGAAGGCA
*
24451429 TTCGTGCGAGTCACTATAA
64 TTCGTGCGAGTCAATATAA
**
24451448 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24451473 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 52 0.57
80 38 0.42
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCGGGTCTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:24451503 original size:79 final size:79
Alignment explanation
Indices: 24451340--24451505 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
24451330 TGGTCTAGGA
* * *
24451340 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
24451405 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
24451419 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
24451483 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
24451498 TCCGAAGG
1 TCCGAAGG
24451506 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:24457943 original size:48 final size:48
Alignment explanation
Indices: 24457826--24458105 Score: 269
Period size: 48 Copynumber: 5.9 Consensus size: 48
24457816 GGGTGAATTA
* * * ** * *
24457826 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCAAATGTCGA-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-GATTG
* *
24457874 CCGAT-CCATGTCCCTGACATGGTCTTACACTAGCTCTCGTCTGATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * * * *
24457921 CTGATGGCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * ** *
24457969 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATGTTCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
* * * * *
24458017 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCACACA-CATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TGATTG
* *
24458065 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
24458106 ATTACCCAGA
Statistics
Matches: 191, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
46 2 0.01
47 34 0.18
48 155 0.81
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGATTG
Found at i:24458020 original size:96 final size:96
Alignment explanation
Indices: 24457828--24458105 Score: 335
Period size: 96 Copynumber: 2.9 Consensus size: 96
24457818 GTGAATTACC
* * * * * * *
24457828 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCAAATGTCGAGGCCGAT-CCATGTCCCTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATAGTGGCCGATGCCATGTCCCAGAC
* * *
24457892 ATGGTCTTACACTAGCTCTCGTCTGATTGCT
66 ATGGTCTTACACTGGCTCTCATCTGATAGCT
* * * *
24457923 GATGGCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGGTGGCCGATGCCATGTCCCAGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATAGTGGCCGATGCCATGTCCCAGAC
* **
24457988 ATGGTCTTACACTGGCTCTCATGTTCTAGCT
66 ATGGTCTTACACTGGCTCTCATCTGATAGCT
* * * *
24458019 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAAT-GCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-AGTGGCCGATGCCATGTCCCAGA
*
24458083 CATGGTCTTACACTGGCACTCAT
65 CATGGTCTTACACTGGCTCTCAT
24458106 ATTACCCAGA
Statistics
Matches: 156, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
95 43 0.28
96 112 0.72
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATAGTGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATCTGATAGCT
Found at i:24458085 original size:144 final size:143
Alignment explanation
Indices: 24457826--24458107 Score: 379
Period size: 144 Copynumber: 2.0 Consensus size: 143
24457816 GGGTGAATTA
* *
24457826 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCAAATGTCGAGGCCGATCCATGTCCCTGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAAATGTCGAGGCCGATCCATGTCCCAGA
* * * * * * *
24457891 CATGGTCTTACACTAGCTCTCGTCTGATTGCTGATGGCATGTCCCAGACATGGTCTTACACTGGC
66 CATGGTCTTACACTAGCACACGACTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
*
24457956 TCTCATATGGTGG
131 ACTCATATGGTGG
* * ** * *
24457969 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATGTTCTA-GCTGATGCCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAAATG-TCGAGGCCGAT-CCATGTCCCA
24458033 GACATGGTCTTACACTAGCACAC-ACATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
64 GACATGGTCTTACACTAGCACACGAC-TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
24458097 GGCACTCATAT
128 GGCACTCATAT
24458108 TACCCAGATG
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
143 43 0.36
144 77 0.64
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (143 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAAATGTCGAGGCCGATCCATGTCCCAGA
CATGGTCTTACACTAGCACACGACTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
ACTCATATGGTGG
Found at i:24459933 original size:21 final size:21
Alignment explanation
Indices: 24459907--24459947 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24459897 TCTAAGGGCA
* *
24459907 CAGGCGTTTGGGGTGGCCACT
1 CAGGCGTGTGGAGTGGCCACT
24459928 CAGGCGTGTGGAGTGGCCAC
1 CAGGCGTGTGGAGTGGCCAC
24459948 ACGGCCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.20
Consensus pattern (21 bp):
CAGGCGTGTGGAGTGGCCACT
Found at i:24462354 original size:50 final size:50
Alignment explanation
Indices: 24462235--24462516 Score: 282
Period size: 50 Copynumber: 5.6 Consensus size: 50
24462225 GTTGTGAGAA
* * * * *
24462235 CACATGTGTAGTACTATA-TGCAGGCTACTATATGTTTAAAATGGTT-TTTGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTAC--TACGTGTAACA-GATTGTTAGGT
* *
24462287 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATTGTTAGGT
* * * * * * *
24462337 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTAACAGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATTG-TTAGGT
* * * * *
24462388 CACTTGTGTAGTACTAAGTGCAAGCTAGTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATTGTTAGGT
* * *
24462438 CACGTGTGTAGTACTAAGTGCAGGCTACTAC-TATAAAAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATTGTTAGGT
**
24462487 TGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
24462517 TGCTTACTAG
Statistics
Matches: 190, Mismatches: 37, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
49 44 0.23
50 81 0.43
51 40 0.21
52 25 0.13
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATTGTTAGGT
Found at i:24462421 original size:101 final size:101
Alignment explanation
Indices: 24462286--24462467 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
24462276 TGGTTTTTGG
* * *
24462286 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
24462351 TAAGTGTAGGCTACTATGCGTAACAGATAGCTTCGA
66 TAAGTGCAGGCTACTATGCGTAACAGATAGCTTCGA
* * * *
24462387 TCACTTGTGTAGTACTAAGTGCAAGCTAGTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
24462452 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
24462468 CTATAAAAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTAACAGATAGCTTCGA
Found at i:24464402 original size:20 final size:20
Alignment explanation
Indices: 24464377--24464428 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
24464367 CGGGCTGAGG
24464377 ACACGGGCGTGTCTAGAGCC
1 ACACGGGCGTGTCTAGAGCC
24464397 ACACGGGCGTGTCTAGAGCC
1 ACACGGGCGTGTCTAGAGCC
*
24464417 ACACGGGTGTGT
1 ACACGGGCGTGT
24464429 GAGACCACAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.27, G:0.37, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCTAGAGCC
Found at i:24464436 original size:18 final size:20
Alignment explanation
Indices: 24464377--24464438 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
24464367 CGGGCTGAGG
*
24464377 ACACGGGCGTGTCTAGAGCC
1 ACACGGGCGTGTCGAGAGCC
*
24464397 ACACGGGCGTGTCTAGAGCC
1 ACACGGGCGTGTCGAGAGCC
*
24464417 ACACGGGTGTGT-GAGA-CC
1 ACACGGGCGTGTCGAGAGCC
24464435 ACAC
1 ACAC
24464439 AGCCTACCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.15
19 3 0.08
20 31 0.77
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCGAGAGCC
Found at i:24475991 original size:39 final size:39
Alignment explanation
Indices: 24475932--24476050 Score: 202
Period size: 39 Copynumber: 3.1 Consensus size: 39
24475922 TTGGGTATTA
24475932 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
* *
24475971 GTCCATACGTCCTACCGGTGGTTGAGTTATTCAGCTTGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
* *
24476010 GGCCGTACGTCCTACCGGTGGTTGAGTTATCCAGCATGT
1 GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
24476049 GT
1 GT
24476051 TACGGATACT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.15, C:0.24, G:0.29, T:0.33
Consensus pattern (39 bp):
GTCCGTACGTCCTACCGGTGGTTGAGTTATTCAGCATGT
Found at i:24482145 original size:68 final size:67
Alignment explanation
Indices: 24482073--24482222 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 67
24482063 CATCATGTGT
* * * *
24482073 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
24482135 ATGTAG
62 ATGTAG
* ** * *
24482141 ACAAGAGAACTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
24482206 AG
66 AG
24482208 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
24482223 GATAAACTGG
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 25 0.37
68 12 0.18
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:24482177 original size:64 final size:64
Alignment explanation
Indices: 24482097--24482278 Score: 181
Period size: 67 Copynumber: 2.8 Consensus size: 64
24482087 AGACATTATG
* *
24482097 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAACTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAACTACGAGATAA
* * * * * * *
24482161 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAACTACGAGAT
24482226 AA
63 AA
* * * *
24482228 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGA
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGA
24482279 GCCGAACTAT
Statistics
Matches: 95, Mismatches: 18, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAACTACGAGATAA
Found at i:24488360 original size:40 final size:40
Alignment explanation
Indices: 24488277--24488422 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
24488267 TCGAATGATG
* *
24488277 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
24488317 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
24488357 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
24488398 -CCGGGCTATGTCCCGAAGGCTTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24488423 AGCAAGTCGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 76 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:24492763 original size:105 final size:105
Alignment explanation
Indices: 24492581--24492786 Score: 369
Period size: 105 Copynumber: 2.0 Consensus size: 105
24492571 GAGCAAGCTT
* *
24492581 AGGCACATATAAAACATAGTCAAATCACGAAATCAAGGGGTCAAGTAACTCTCACCGACCCTACA
1 AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGGGGTCAAGTAACTCTCACCGACCCTACA
24492646 ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
66 ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
*
24492686 AGGCAAATATAAAACATAGTAAAATCGCGAAATC-AGGAGGTCAAGTAACTCTCACCGACCCTAC
1 AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGG-GGTCAAGTAACTCTCACCGACCCTAC
24492750 AATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACAT
65 AATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACAT
24492787 TCAGAGTGTT
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
104 3 0.03
105 94 0.97
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (105 bp):
AGGCAAATATAAAACATAGTAAAATCACGAAATCAAGGGGTCAAGTAACTCTCACCGACCCTACA
ATAGGTCCCAGTCGACTTGGGCGACCCGAGCAACATGCTA
Found at i:24492857 original size:18 final size:18
Alignment explanation
Indices: 24492834--24492868 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24492824 TGGCCTATCC
24492834 GTGTGGGTCCACA-AGCCT
1 GTGTGGG-CCACACAGCCT
24492852 GTGTGGGCCACACAGCC
1 GTGTGGGCCACACAGCC
24492869 CAAGTTGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (18 bp):
GTGTGGGCCACACAGCCT
Found at i:24500982 original size:43 final size:43
Alignment explanation
Indices: 24500926--24501011 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
24500916 CCTGTGTTGG
24500926 CAAATAAGAGTATTTATTTTTATGTGCAGGAAGGGTAAGTGTT
1 CAAATAAGAGTATTTATTTTTATGTGCAGGAAGGGTAAGTGTT
24500969 CAAATAAGAGTATTTATTTTTATGTGCAGGAAGGGTAAGTGTT
1 CAAATAAGAGTATTTATTTTTATGTGCAGGAAGGGTAAGTGTT
24501012 GGAACCTAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (43 bp):
CAAATAAGAGTATTTATTTTTATGTGCAGGAAGGGTAAGTGTT
Found at i:24501930 original size:16 final size:16
Alignment explanation
Indices: 24501901--24501935 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24501891 TCACGAGCTT
24501901 AAAGCGATAAATGCCGA
1 AAAGCGATAAATGCC-A
24501918 AAAGCGA-AAATGCCA
1 AAAGCGATAAATGCCA
24501933 AAA
1 AAA
24501936 TTCTGGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 7 0.39
17 7 0.39
ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09
Consensus pattern (16 bp):
AAAGCGATAAATGCCA
Found at i:24502341 original size:24 final size:25
Alignment explanation
Indices: 24502299--24502360 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
24502289 ATTACGATAT
*
24502299 TACCCTTATAATATGAAAATGACTATTT
1 TACCCTTA-AATA--AAAATGACTATTA
*
24502327 TGCCCTTAAATAAAAATGACTATTA
1 TACCCTTAAATAAAAATGACTATTA
24502352 TACCCTTAA
1 TACCCTTAA
24502361 GGTTTAAACG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.65
27 4 0.13
28 7 0.23
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.35
Consensus pattern (25 bp):
TACCCTTAAATAAAAATGACTATTA
Found at i:24502574 original size:24 final size:23
Alignment explanation
Indices: 24502496--24502598 Score: 161
Period size: 23 Copynumber: 4.3 Consensus size: 23
24502486 AGGAAGTGAA
24502496 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
24502519 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
24502542 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
24502565 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
24502589 CAAAGAGGCT
1 -AAAG-GGCT
24502599 AGGCCTCTAG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
23 44 0.59
24 26 0.35
25 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:24502848 original size:31 final size:31
Alignment explanation
Indices: 24502810--24502869 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
24502800 TACAGTAAAT
24502810 GCTTCGGCCCAGTAATATGAAATATGAAAAG
1 GCTTCGGCCCAGTAATATGAAATATGAAAAG
*
24502841 GCTTCGGCCCAGTATTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
24502870 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAG
Found at i:24525203 original size:26 final size:26
Alignment explanation
Indices: 24525160--24525231 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
24525150 AACAACCATT
* * *
24525160 AAAATAATAAAAAAATAACAATGT-TC
1 AAAATAA-AATAAAATAAAAAGGTCTC
*
24525186 AAAATAGAAATAACATAAAAAGGTCTC
1 AAAATA-AAATAAAATAAAAAGGTCTC
*
24525213 ACAATAAAATAAAATAAAA
1 AAAATAAAATAAAATAAAA
24525232 TAACTAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 30 0.79
27 8 0.21
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.19
Consensus pattern (26 bp):
AAAATAAAATAAAATAAAAAGGTCTC
Found at i:24526816 original size:18 final size:19
Alignment explanation
Indices: 24526789--24526836 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
24526779 AAATACTACT
*
24526789 AATAACAATAAAAA-AGAA
1 AATAAAAATAAAAATAGAA
24526807 AATAAAAATAAAAATAGAA
1 AATAAAAATAAAAATAGAA
* *
24526826 ACTAAACATAA
1 AATAAAAATAA
24526837 TATTAAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (19 bp):
AATAAAAATAAAAATAGAA
Found at i:24532657 original size:42 final size:42
Alignment explanation
Indices: 24532598--24532685 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
24532588 AGTTTTTGAG
24532598 ACATTTAATTATTAATTCTGCTAAACCATTTTATACGTATGA
1 ACATTTAATTATTAATTCTGCTAAACCATTTTATACGTATGA
*
24532640 ACATTTAATTATTAATTCTGCTGAACCATTTTATACGTATGA
1 ACATTTAATTATTAATTCTGCTAAACCATTTTATACGTATGA
24532682 ACAT
1 ACAT
24532686 CAGGCTTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (42 bp):
ACATTTAATTATTAATTCTGCTAAACCATTTTATACGTATGA
Found at i:24535067 original size:46 final size:47
Alignment explanation
Indices: 24534967--24535281 Score: 209
Period size: 46 Copynumber: 6.7 Consensus size: 47
24534957 ATTGTGAACT
* * * * * * *
24534967 AGTGTAAGACTATGCCTGGGACATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA-AGCC
24535015 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTAAGCC
* * *
24535061 AGTGTAAGA-CATGTCTGGGACAT-ACATCGGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGTAAGCC
* * * * *
24535105 AGTGTAAGACCATGTCTGGGATATGGTATCAGCAC-GGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GC-CTCGAGATGT-A-AGCC
* * ** ** *
24535155 ATTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA-AGCC
* * * *
24535204 AATGTAAGACCATGTCTGGGCCATGGCATCGACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGA--GATGTAAGCC
*
24535251 AGTGTAAGATCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
24535282 ACATTATACC
Statistics
Matches: 211, Mismatches: 43, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
44 11 0.05
45 16 0.08
46 59 0.28
47 45 0.21
48 15 0.07
49 31 0.15
50 34 0.16
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTAAGCC
Found at i:24539774 original size:2 final size:2
Alignment explanation
Indices: 24539707--24539756 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
24539697 CGCCCTTATA
24539707 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
24539749 CT CA CT CT
1 CT CT CT CT
24539757 TACAGTCTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.02, C:0.50, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:24540078 original size:18 final size:20
Alignment explanation
Indices: 24540039--24540081 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
24540029 TTAAATTATT
*
24540039 AATATATGAGAGGGACCAAA
1 AATATATGAAAGGGACCAAA
*
24540059 AATATATGAAAGGGACAAAA
1 AATATATGAAAGGGACCAAA
24540079 AAT
1 AAT
24540082 GCAAATTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.07, G:0.21, T:0.16
Consensus pattern (20 bp):
AATATATGAAAGGGACCAAA
Found at i:24541838 original size:30 final size:30
Alignment explanation
Indices: 24541804--24541892 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 30
24541794 TCAAATCAAG
24541804 ACTAAAATATTAAAATTTAAAAATATAAAA
1 ACTAAAATATTAAAATTTAAAAATATAAAA
* * *
24541834 ACTAAAAT-TGATCAATTTATAAAATAT-ATA
1 ACTAAAATATTA-AAATTTA-AAAATATAAAA
**
24541864 GGTAAAA-ATTAATAATTT-AAAATATAAAA
1 ACTAAAATATTAA-AATTTAAAAATATAAAA
24541893 CCTGAATCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
28 7 0.15
29 4 0.09
30 28 0.61
31 7 0.15
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
ACTAAAATATTAAAATTTAAAAATATAAAA
Found at i:24542331 original size:31 final size:31
Alignment explanation
Indices: 24542287--24542368 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 31
24542277 AAAAAAATGA
* *
24542287 TATCTA-AATTTAAAAT-TTTAATTAAAAAT
1 TATCTATAATTTAAAATATTAAATTAAAAAC
24542316 TATCTATAATATT-AAATATTAAATTAAAAAC
1 TATCTATAAT-TTAAAATATTAAATTAAAAAC
* *
24542347 TATATATATTTTTAAAA-ATTAA
1 TATCTATA-ATTTAAAATATTAA
24542369 CATGGACAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 6 0.14
30 7 0.16
31 27 0.61
32 4 0.09
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (31 bp):
TATCTATAATTTAAAATATTAAATTAAAAAC
Found at i:24542680 original size:21 final size:21
Alignment explanation
Indices: 24542655--24542695 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24542645 TTAAAATTAA
24542655 TTATTAAACTTCAAAATATTT
1 TTATTAAACTTCAAAATATTT
**
24542676 TTATTAAACTTTTAAATATT
1 TTATTAAACTTCAAAATATT
24542696 GATTAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATTAAACTTCAAAATATTT
Found at i:24543278 original size:91 final size:90
Alignment explanation
Indices: 24543101--24543325 Score: 236
Period size: 91 Copynumber: 2.5 Consensus size: 90
24543091 TGTAAAATGT
* * * * *
24543101 CCTCAAATTTTTTTAAAAAGAAGTAATTAAGCTCTT-CTTTTTTTTTTCACTCAATTGGATATTT
1 CCTCAAAATTTTTTAAAAA-AAGCAATTAAGCCCTTGCTTTTTTTTCTCACTCAATTGGATACTT
** *
24543165 AAACTTTCAAAATACATCAAAAAAAC
65 AAACTACCAAAATACATAAAAAAAAC
* * * *
24543191 TCTCAAACTTTTTTAAAAACAGCAATTAAGCCCCTTGCTTTTTTTTCTCACTCAATTGGTTACTT
1 CCTCAAAATTTTTTAAAAAAAGCAATTAAG-CCCTTGCTTTTTTTTCTCACTCAATTGGATACTT
* * *
24543256 GAACTACCAAAATGCGTAAAAAAAAC
65 AAACTACCAAAATACATAAAAAAAAC
* * * * * *
24543282 CCTAAAAAATTTTCAAAAAAAACAATTAAACCCTTGCCTTTTTT
1 CCTCAAAATTTTTTAAAAAAAGCAATTAAGCCCTTGCTTTTTTT
24543326 GCACTCAATT
Statistics
Matches: 110, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 9 0.08
90 34 0.31
91 67 0.61
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.36
Consensus pattern (90 bp):
CCTCAAAATTTTTTAAAAAAAGCAATTAAGCCCTTGCTTTTTTTTCTCACTCAATTGGATACTTA
AACTACCAAAATACATAAAAAAAAC
Found at i:24543395 original size:20 final size:20
Alignment explanation
Indices: 24543359--24543396 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24543349 AAAAAGTCCT
*
24543359 TTGACCGTAAACTTTAACAG
1 TTGACCGTAAACGTTAACAG
24543379 TTGACCGTTAAA-GTTAAC
1 TTGACCG-TAAACGTTAAC
24543397 TACATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
TTGACCGTAAACGTTAACAG
Found at i:24543504 original size:10 final size:10
Alignment explanation
Indices: 24543464--24543528 Score: 57
Period size: 9 Copynumber: 6.8 Consensus size: 10
24543454 ACAAAAAAAC
*
24543464 TATAAAA-AA
1 TATAAAATAT
*
24543473 TATAAAATAG
1 TATAAAATAT
*
24543483 TA-AAAA-AA
1 TATAAAATAT
*
24543491 TATAAAATTT
1 TATAAAATAT
24543501 TATAAAA-AT
1 TATAAAATAT
24543510 TATAAAAATAT
1 TAT-AAAATAT
24543521 TATAAAAT
1 TATAAAAT
24543529 TCATCAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
8 3 0.07
9 19 0.41
10 19 0.41
11 5 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
TATAAAATAT
Found at i:24543507 original size:18 final size:18
Alignment explanation
Indices: 24543468--24543527 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
24543458 AAAAACTATA
* *
24543468 AAAAATATAAAATAGTAA
1 AAAAATATAAAATATTAT
*
24543486 AAAAATATAAAATTTTAT
1 AAAAATATAAAATATTAT
24543504 AAAAATTATAAAAATATTAT
1 AAAAA-TAT-AAAATATTAT
24543524 AAAA
1 AAAA
24543528 TTCATCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
18 20 0.56
19 3 0.08
20 13 0.36
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAAAATATAAAATATTAT
Found at i:24543796 original size:9 final size:8
Alignment explanation
Indices: 24543784--24543882 Score: 56
Period size: 10 Copynumber: 11.1 Consensus size: 8
24543774 ATAAATTATA
24543784 TATATTTT
1 TATATTTT
24543792 CTATATTTCT
1 -TATATTT-T
24543802 ATATATTTT
1 -TATATTTT
24543811 ATAATATTTT
1 -T-ATATTTT
24543821 TATGATTTT
1 TAT-ATTTT
*
24543830 TATAAAATTT
1 TAT--ATTTT
* *
24543840 AATAATTT
1 TATATTTT
24543848 TATAATTTT
1 TAT-ATTTT
24543857 TATTGATTTT
1 TA-T-ATTTT
24543867 TAT-TTTT
1 TATATTTT
*
24543874 TATCTTTT
1 TATATTTT
24543882 T
1 T
24543883 TGCCATATGT
Statistics
Matches: 76, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
7 7 0.09
8 14 0.18
9 26 0.34
10 29 0.38
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (8 bp):
TATATTTT
Found at i:24543808 original size:10 final size:9
Alignment explanation
Indices: 24543771--24543856 Score: 61
Period size: 9 Copynumber: 9.3 Consensus size: 9
24543761 TTCTTACGGC
*
24543771 TTTATAAAT
1 TTTATATAT
*
24543780 TATATATAT
1 TTTATATAT
*
24543789 TTTCTATAT
1 TTTATATAT
24543798 TTCTATATAT
1 TT-TATATAT
24543808 TTTATAATAT
1 TTTAT-ATAT
24543818 TTT-TATGATT
1 TTTATAT-A-T
* *
24543828 TTTATAAAA
1 TTTATATAT
24543837 TTTA-ATAAT
1 TTTATAT-AT
24543846 TTTATA-AT
1 TTTATATAT
24543854 TTT
1 TTT
24543857 TATTGATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
8 8 0.13
9 30 0.49
10 21 0.34
11 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTATATAT
Found at i:24543819 original size:20 final size:19
Alignment explanation
Indices: 24543771--24543859 Score: 80
Period size: 18 Copynumber: 4.8 Consensus size: 19
24543761 TTCTTACGGC
*
24543771 TTTATAA-ATTATATATAT
1 TTTATAATATTTTATATAT
*
24543789 TTTCT-ATATTTCTATATAT
1 TTTATAATATTT-TATATAT
24543808 TTTATAATATTTT-TATGATT
1 TTTATAATATTTTATAT-A-T
* *
24543828 TTTATAAAATTTAATA-AT
1 TTTATAATATTTTATATAT
24543846 TTTATAAT-TTTTAT
1 TTTATAATATTTTAT
24543860 TGATTTTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
17 6 0.10
18 18 0.31
19 14 0.24
20 18 0.31
21 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTATAATATTTTATATAT
Found at i:24543858 original size:18 final size:19
Alignment explanation
Indices: 24543806--24543869 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 19
24543796 ATTTCTATAT
*
24543806 ATTTTATAATATTTTTATGA
1 ATTTTATAAT-TTTTAATGA
* **
24543826 TTTTTATAAAATTTAAT-A
1 ATTTTATAATTTTTAATGA
*
24543844 ATTTTATAATTTTTATTGA
1 ATTTTATAATTTTTAATGA
*
24543863 TTTTTAT
1 ATTTTAT
24543870 TTTTTATCTT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
18 14 0.41
19 12 0.35
20 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTTATAATTTTTAATGA
Found at i:24544931 original size:31 final size:30
Alignment explanation
Indices: 24544888--24545059 Score: 145
Period size: 31 Copynumber: 5.6 Consensus size: 30
24544878 AGAATTAATC
*
24544888 ATATTAATATTAAATTAACAAAATATTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
* *
24544919 AGATAAATATTAAATTAAATTAAGTA-TAT-T
1 ATATAAATATTAAATTAAA--AAATATTATCT
* * *
24544949 ATATTAATATTTAATTAATAAAATACTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
* * *
24544980 ATCTAAATATTAAATTAAATTTAATATCA-C-
1 ATATAAATATTAAATTAAA--AAATATTATCT
*
24545010 ATATTAATATTAAATTAATAAAATATTATCT
1 ATATAAATATTAAATTAA-AAAATATTATCT
* *
24545041 ATCTGAATATTAAATTAAA
1 ATATAAATATTAAATTAAA
24545060 TTTAATATCT
Statistics
Matches: 112, Mismatches: 19, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
29 10 0.09
30 39 0.35
31 54 0.48
32 9 0.08
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (30 bp):
ATATAAATATTAAATTAAAAAATATTATCT
Found at i:24544972 original size:61 final size:61
Alignment explanation
Indices: 24544885--24545080 Score: 288
Period size: 61 Copynumber: 3.2 Consensus size: 61
24544875 ATTAGAATTA
* **
24544885 ATCATATTAATATTAAATTAACAAAATATTATCTAGATAAATATTAAATTAAA-TTAAGTAT
1 ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAA-TAT
* * *
24544946 ATTATATTAATATTTAATTAATAAAATACTATCTATCTAAATATTAAATTAAATTTAATAT
1 ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
*
24545007 CA-CATATTAATATTAAATTAATAAAATATTATCTATCTGAATATTAAATTAAATTTAATAT
1 -ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
*
24545068 CTCATATTAATAT
1 ATCATATTAATAT
24545081 CTAGATAAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
61 116 0.96
62 5 0.04
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
ATCATATTAATATTAAATTAATAAAATATTATCTATCTAAATATTAAATTAAATTTAATAT
Found at i:24553194 original size:3 final size:3
Alignment explanation
Indices: 24553188--24553226 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
24553178 AAAGAGCTCT
24553188 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
24553227 ATCTCTTCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:24556849 original size:24 final size:23
Alignment explanation
Indices: 24556808--24556852 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
24556798 AAATATTTTT
* *
24556808 AAAATAAGTTATATTTTTTAAAA
1 AAAATAAGTAATAGTTTTTAAAA
24556831 AAAATAAAGTAATAGTTTTTAA
1 AAAAT-AAGTAATAGTTTTTAA
24556853 GTAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (23 bp):
AAAATAAGTAATAGTTTTTAAAA
Found at i:24568963 original size:40 final size:40
Alignment explanation
Indices: 24568908--24569114 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
24568898 TGAATGATAC
* *
24568908 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
24568948 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
24568988 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
24569027 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
24569067 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
24569107 CC-GGCTAA
1 CCGGGCTAA
24569115 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 38 0.26
40 106 0.74
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:24569042 original size:79 final size:79
Alignment explanation
Indices: 24568908--24569114 Score: 240
Period size: 79 Copynumber: 2.6 Consensus size: 79
24568898 TGAATGATAC
* * *
24568908 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
* ** *
24568972 ATGCTAGTGATTATAT
64 ATGCAAGTGACCAAAT
* *
24568988 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTA
*
24569052 TGCAAGTTACCAAAT
65 TGCAAGTGACCAAAT
* * *
24569067 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
24569115 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
78 2 0.02
79 69 0.63
80 35 0.32
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCAAGTGACCAAAT
Found at i:24577108 original size:40 final size:40
Alignment explanation
Indices: 24577053--24577220 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
24577043 TTGAATGATA
* *
24577053 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
24577093 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
24577133 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
24577173 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
24577213 CC-GGCTAA
1 CCGGGCTAA
24577221 ATTCGAAGAA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:24581473 original size:29 final size:29
Alignment explanation
Indices: 24581438--24581522 Score: 134
Period size: 29 Copynumber: 2.9 Consensus size: 29
24581428 TGTGGCCCTA
* *
24581438 CCATGTGTCTCACATGGCCAAAAACACAC
1 CCATGTGTCTCACACGGCCAAAGACACAC
*
24581467 CCGTGTGTCTCACACGGCCAAAGACACAC
1 CCATGTGTCTCACACGGCCAAAGACACAC
*
24581496 TCATGTGTCTCACACGGCCAAAGACAC
1 CCATGTGTCTCACACGGCCAAAGACAC
24581523 GCTGGTGTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (29 bp):
CCATGTGTCTCACACGGCCAAAGACACAC
Found at i:24587049 original size:23 final size:23
Alignment explanation
Indices: 24587019--24587137 Score: 109
Period size: 23 Copynumber: 5.2 Consensus size: 23
24587009 AACTCGCCAT
24587019 AGCTCGTATGAGCTTACTGATTC
1 AGCTCGTATGAGCTTACTGATTC
* *
24587042 AGCTCGTAAGAGCTTACCGATTC
1 AGCTCGTATGAGCTTACTGATTC
* *
24587065 AGCTCGTAAGAGCTTACTGTTTC
1 AGCTCGTATGAGCTTACTGATTC
* * *
24587088 AACTCAT-TGAAGCTTACCGATTC
1 AGCTCGTATG-AGCTTACTGATTC
* * *
24587111 TGTTCG-ATAGAGCTTACTG-TTT
1 AGCTCGTAT-GAGCTTACTGATTC
24587133 AGCTC
1 AGCTC
24587138 AATAGAGCTT
Statistics
Matches: 76, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
22 6 0.08
23 69 0.91
24 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (23 bp):
AGCTCGTATGAGCTTACTGATTC
Found at i:24587102 original size:46 final size:45
Alignment explanation
Indices: 24587019--24587202 Score: 151
Period size: 46 Copynumber: 3.9 Consensus size: 45
24587009 AACTCGCCAT
* * *
24587019 AGCTCGTATGAGCTTACTGATTCAGCTC-GTAAGAGCTTACCGATTC
1 AGCTCG-AAGAGCTTACTGTTTCAGCTCAAT-AGAGCTTACCGATTC
* *
24587065 AGCTCGTAAGAGCTTACTGTTTCAACTC-ATTGAAGCTTACCGATTC
1 AGCTCG-AAGAGCTTACTGTTTCAGCTCAATAG-AGCTTACCGATTC
* * *
24587111 TGTTCGATAGAGCTTACTGTTT-AGCTCAATAGAGCTTACCGTTTTC
1 AGCTCGA-AGAGCTTACTGTTTCAGCTCAATAGAGCTTACCG-ATTC
**
24587157 AGCTC-AATGGAGCTTACTGTTTATCAGCTCAGGAGGAGCTTACCGA
1 AGCTCGAA--GAGCTTACTG-TT-TCAGCTCAATA-GAGCTTACCGA
24587203 CCATAACTCG
Statistics
Matches: 113, Mismatches: 15, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
44 1 0.01
45 16 0.14
46 76 0.67
47 2 0.02
48 1 0.01
49 7 0.06
50 10 0.09
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (45 bp):
AGCTCGAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTC
Found at i:24587145 original size:22 final size:22
Alignment explanation
Indices: 24587117--24587179 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 22
24587107 ATTCTGTTCG
24587117 ATAGAGCTTACTGTTTAGCTCA
1 ATAGAGCTTACTGTTTAGCTCA
*
24587139 ATAGAGCTTACCGTTTTCAGCTCA
1 ATAGAGCTTACTG-TTT-AGCTCA
*
24587163 ATGGAGCTTACTGTTTA
1 ATAGAGCTTACTGTTTA
24587180 TCAGCTCAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 13 0.36
23 6 0.17
24 17 0.47
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (22 bp):
ATAGAGCTTACTGTTTAGCTCA
Found at i:24587198 original size:26 final size:24
Alignment explanation
Indices: 24587120--24587201 Score: 89
Period size: 24 Copynumber: 3.4 Consensus size: 24
24587110 CTGTTCGATA
* *
24587120 GAGCTTACTG-TTT-AGCTCAATA
1 GAGCTTACCGTTTTCAGCTCAATG
24587142 GAGCTTACCGTTTTCAGCTCAATG
1 GAGCTTACCGTTTTCAGCTCAATG
*
24587166 GAGCTTACTGTTTATCAGCTCAGGA-G
1 GAGCTTACCGTTT-TCAGCTCA--ATG
24587192 GAGCTTACCG
1 GAGCTTACCG
24587202 ACCATAACTC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
22 9 0.18
23 3 0.06
24 20 0.39
25 8 0.16
26 10 0.20
27 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (24 bp):
GAGCTTACCGTTTTCAGCTCAATG
Found at i:24594048 original size:20 final size:20
Alignment explanation
Indices: 24594004--24594048 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
24593994 TTGTTTAAAT
24594004 GTTTAATGATAGATTATGAAG
1 GTTTAATGATAGATTAT-AAG
*
24594025 GTTTATTGATAGA-TATATAG
1 GTTTAATGATAGATTATA-AG
24594045 GTTT
1 GTTT
24594049 TGTTAAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.41
21 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (20 bp):
GTTTAATGATAGATTATAAG
Found at i:24595901 original size:40 final size:40
Alignment explanation
Indices: 24595846--24596094 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
24595836 AACATTGGAA
24595846 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24595886 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24595926 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24595966 ATATATCCGGGCTAAGACCCGAAGGCATTCGT-CGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24596005 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24596044 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24596085 CTATATCCGG
1 ATATATCCGG
24596095 TTAAATCCCG
Statistics
Matches: 189, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 39 0.21
40 150 0.79
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24596064 original size:119 final size:120
Alignment explanation
Indices: 24595846--24596094 Score: 376
Period size: 119 Copynumber: 2.1 Consensus size: 120
24595836 AACATTGGAA
24595846 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * * *
24595911 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
66 CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
24595966 ATATATCCGGGCTAAGACCCGAAGGCATTCGT-CGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * *
24596030 CCTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
66 CATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
*
24596085 CTATATCCGG
1 ATATATCCGG
24596095 TTAAATCCCG
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
118 2 0.02
119 83 0.71
120 32 0.27
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
Found at i:24604073 original size:40 final size:40
Alignment explanation
Indices: 24604018--24604267 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
24604008 AACATTGGAA
24604018 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24604058 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24604098 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24604138 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24604178 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24604217 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24604258 CTATATCCGG
1 ATATATCCGG
24604268 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24606240 original size:46 final size:45
Alignment explanation
Indices: 24606168--24606291 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 45
24606158 CTGCTTGTAT
* *
24606168 GAGCTTACCGATTCAGCTC-GTAAGAGCTTACTATTTCAGCTC-ATT
1 GAGCTTACCGATTCAGCTCAAT-AGAGCTTACTA-TTCAGCTCAATA
*
24606213 GAAGCTTACCGATTCAGCTCAATAGAGCTTACTATTCAGCTTAATA
1 G-AGCTTACCGATTCAGCTCAATAGAGCTTACTATTCAGCTCAATA
* * *
24606259 GAGCTTACCGTTTTTAGCTCAATAGAACTTACT
1 GAGCTTACCG-ATTCAGCTCAATAGAGCTTACT
24606292 GTTTATCAGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
45 17 0.25
46 51 0.74
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (45 bp):
GAGCTTACCGATTCAGCTCAATAGAGCTTACTATTCAGCTCAATA
Found at i:24606282 original size:24 final size:24
Alignment explanation
Indices: 24606168--24606318 Score: 111
Period size: 23 Copynumber: 6.4 Consensus size: 24
24606158 CTGCTTGTAT
*
24606168 GAGCTTACCG-ATTCAGCTC-GTAA
1 GAGCTTACCGTATTCAGCTCAAT-A
*
24606191 GAGCTTA-C-TATTTCAGCTC-ATT
1 GAGCTTACCGTA-TTCAGCTCAATA
24606213 GAAGCTTACCG-ATTCAGCTCAATA
1 G-AGCTTACCGTATTCAGCTCAATA
*
24606237 GAGCTTA-C-TATTCAGCTTAATA
1 GAGCTTACCGTATTCAGCTCAATA
* *
24606259 GAGCTTACCGTTTTTAGCTCAATA
1 GAGCTTACCGTATTCAGCTCAATA
* * * **
24606283 GAACTTACTGTTTATCAGCTCAGGA
1 GAGCTTACCGTAT-TCAGCTCAATA
24606308 GGAGCTTACCG
1 -GAGCTTACCG
24606319 ACCATGACTC
Statistics
Matches: 103, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
22 23 0.22
23 37 0.36
24 27 0.26
25 8 0.08
26 8 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (24 bp):
GAGCTTACCGTATTCAGCTCAATA
Found at i:24611261 original size:21 final size:21
Alignment explanation
Indices: 24611237--24611306 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 21
24611227 TCTCACACGC
24611237 CCGTGTGGCCAAGGGACATGG
1 CCGTGTGGCCAAGGGACATGG
24611258 CCGTGTGGCCAAGGGACATGG
1 CCGTGTGGCCAAGGGACATGG
* * *
24611279 CTGTATGGCCAAGGCACAT-G
1 CCGTGTGGCCAAGGGACATGG
24611299 CCTGTGTG
1 CC-GTGTG
24611307 AAAATCGACT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 2 0.05
21 41 0.95
ACGTcount: A:0.19, C:0.24, G:0.39, T:0.19
Consensus pattern (21 bp):
CCGTGTGGCCAAGGGACATGG
Found at i:24612167 original size:16 final size:16
Alignment explanation
Indices: 24612146--24612178 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24612136 GTTTAAGATT
24612146 ACTTTTGTCATAATTA
1 ACTTTTGTCATAATTA
*
24612162 ACTTTTTTCATAATTA
1 ACTTTTGTCATAATTA
24612178 A
1 A
24612179 GCGGAGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (16 bp):
ACTTTTGTCATAATTA
Found at i:24614967 original size:2 final size:2
Alignment explanation
Indices: 24614960--24615003 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
24614950 AAACAAGCAA
24614960 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
24615002 AG
1 AG
24615004 TTCTTAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:24618807 original size:40 final size:40
Alignment explanation
Indices: 24618770--24618955 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
24618760 GCTACTCGTT
*
24618770 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
24618810 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
24618850 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
24618890 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
24618931 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24618956 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:24618874 original size:80 final size:78
Alignment explanation
Indices: 24618737--24618955 Score: 266
Period size: 80 Copynumber: 2.7 Consensus size: 78
24618727 GAATCACGTA
* *
24618737 CCTTCGGAGT-TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGA-TCTTAACCGGATATAG-TACTCGTACAAATGCCTTCGGGACTTAGCCCGGATT-TA
24618800 GTAACTCGCACAAATG
63 GTAACTCGCACAAATG
* *
24618816 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTC-GGATCTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTA
24618880 GTAACTCGCACAAATG
63 GTAACTCGCACAAATG
* * *
24618896 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
24618956 CATCATTCGA
Statistics
Matches: 122, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.11
80 100 0.82
81 9 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (78 bp):
CCTTCGGATCTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
ACTCGCACAAATG
Found at i:24626626 original size:4 final size:4
Alignment explanation
Indices: 24626617--24626641 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24626607 ACAAATAATA
24626617 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
24626642 TTATGTTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:24628049 original size:90 final size:91
Alignment explanation
Indices: 24627861--24628051 Score: 251
Period size: 91 Copynumber: 2.1 Consensus size: 91
24627851 ATATCAATTT
* * * * *
24627861 ATTAAGAACATTTAGTGGTTCATCCTATAAATTCGGTACGTTCATCAAGTCTATCTCAAATAAGA
1 ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGTACATTCATCAAGTCCATCTCAAATAAGA
*
24627926 CCATCCAAACCCTAGGCTATGAACTC
66 CCACCCAAACCCTAGGCTATGAACTC
* * * *
24627952 ATTAAGAGCATCTAGTAGTTCATCCTATAAGTTCGGTGA-ATTCATCAAGTCCGTCT-TAGTAAG
1 ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGT-ACATTCATCAAGTCCATCTCAAATAAG
* *
24628015 AGCACCCAAACTCTAGGCTATGAACTC
65 ACCACCCAAACCCTAGGCTATGAACTC
24628042 ATTAAGAGCA
1 ATTAAGAGCA
24628052 CGGAGGTCAT
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
90 39 0.45
91 47 0.54
92 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (91 bp):
ATTAAGAGCATCTAGTAGTTCATCCTATAAATTCGGTACATTCATCAAGTCCATCTCAAATAAGA
CCACCCAAACCCTAGGCTATGAACTC
Found at i:24633257 original size:40 final size:39
Alignment explanation
Indices: 24633212--24633341 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
24633202 CGGAATATAA
24633212 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24633252 CCGGATAGAATGTC-TCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24633292 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
24633332 CCGGATATAA
1 CCGGATATAA
24633342 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:24633356 original size:40 final size:40
Alignment explanation
Indices: 24633228--24633379 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
24633218 ATAACCATGT
* * *
24633228 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* * ** * *
24633268 GCACGAA-TGCCTTCAGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
24633308 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
24633348 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
24633380 CATTCAATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:24641361 original size:20 final size:19
Alignment explanation
Indices: 24641320--24641367 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
24641310 GAATAAAATC
*
24641320 AAATAAAATTAAAAAATGTAA
1 AAATAAATTTAAAAAA-GT-A
24641341 AAATAAATTTAAGAAAA-TA
1 AAATAAATTTAA-AAAAGTA
24641360 AAATAAAT
1 AAATAAAT
24641368 AGATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 9 0.36
20 1 0.04
21 11 0.44
22 4 0.16
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (19 bp):
AAATAAATTTAAAAAAGTA
Found at i:24657254 original size:9 final size:9
Alignment explanation
Indices: 24657226--24657277 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
24657216 ATAAACATGG
24657226 TATGTATGA
1 TATGTATGA
*
24657235 TATGCACATGA
1 TATG--TATGA
*
24657246 CATGTATGA
1 TATGTATGA
24657255 TATGTACATGA
1 TATGT--ATGA
24657266 TATGTATGA
1 TATGTATGA
24657275 TAT
1 TAT
24657278 TCACATGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 19 0.54
11 16 0.46
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:24657267 original size:11 final size:11
Alignment explanation
Indices: 24657231--24657271 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
24657221 CATGGTATGT
*
24657231 ATGATATGCAC
1 ATGATATGTAC
*
24657242 ATGACATGT--
1 ATGATATGTAC
24657251 ATGATATGTAC
1 ATGATATGTAC
24657262 ATGATATGTA
1 ATGATATGTA
24657272 TGATATTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:24657286 original size:20 final size:20
Alignment explanation
Indices: 24657220--24657286 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
24657210 ATTTTGATAA
* *
24657220 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATTC
*
24657240 ACATGACATGTATGATATGT-
1 ACATGATATGTATGATAT-TC
24657260 ACATGATATGTATGATATTC
1 ACATGATATGTATGATATTC
24657280 ACATGAT
1 ACATGAT
24657287 GTAATCACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.02
20 40 0.98
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATTC
Found at i:24657369 original size:24 final size:24
Alignment explanation
Indices: 24657335--24657458 Score: 173
Period size: 24 Copynumber: 5.2 Consensus size: 24
24657325 GGAGGAAGTG
24657335 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
24657359 GATAAA-GGCTTATGCCCTAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
**
24657383 TAAAA-AACTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
24657406 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
24657429 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
24657453 TAAAAG
1 TAAAAG
24657459 ACGCTAGGCC
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
22 3 0.03
23 36 0.41
24 46 0.52
25 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:24657397 original size:23 final size:23
Alignment explanation
Indices: 24657335--24657458 Score: 167
Period size: 23 Copynumber: 5.3 Consensus size: 23
24657325 GGAGGAAGTG
24657335 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAA-GGCTTATGCCCCAGTTAT
* *
24657359 GATAAAGGCTTATGCCCTAGTTAT
1 TA-AAAGGCTTATGCCCCAGTTAT
**
24657383 TAAAAAACTTATGCCCCAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
*
24657406 TAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
*
24657429 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAA-GGCTTATGCCCCAGTTAT
24657453 TAAAAG
1 TAAAAG
24657459 ACGCTAGGCC
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
23 43 0.49
24 41 0.47
25 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (23 bp):
TAAAAGGCTTATGCCCCAGTTAT
Found at i:24657405 original size:47 final size:47
Alignment explanation
Indices: 24657343--24657456 Score: 160
Period size: 47 Copynumber: 2.4 Consensus size: 47
24657333 TGTAAAAGGG
*
24657343 CTTATGCCCCAGTTATGATAAA-GGCTTATGCCCTAGTTATTAAAA-AA
1 CTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTATTAAAAGAA
**
24657390 CTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGG
1 CTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGAA
*
24657437 CTTTTGCCCCAGTTATTAAA
1 CTTATGCCCCAGTTATTAAA
24657457 AGACGCTAGG
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
45 4 0.07
46 22 0.36
47 35 0.57
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (47 bp):
CTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGAA
Found at i:24657706 original size:31 final size:31
Alignment explanation
Indices: 24657671--24657734 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
24657661 CGTTTACAGT
24657671 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
24657702 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
24657733 AA
1 AA
24657735 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Done.