Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 95 of 378
Found at i:25816861 original size:16 final size:16
Alignment explanation
Indices: 25816840--25816870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25816830 AGATATGAAT
25816840 TGAATTGAATTAAATA
1 TGAATTGAATTAAATA
*
25816856 TGAATTGTATTAAAT
1 TGAATTGAATTAAAT
25816871 TGATGTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (16 bp):
TGAATTGAATTAAATA
Found at i:25820922 original size:43 final size:43
Alignment explanation
Indices: 25820833--25820927 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
25820823 TGTGATAACA
* * * * *
25820833 TGTAAGACCATGTTTGGGACATTGGCATTGTATTGTGATTATG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTAATGCGAATACG
* *
25820876 TGTAAGAGCATGTTTTGGACATTGGCATCGTTAAT-CGAATACG
1 TGTAAGACCATGTTTGGGACATTGGCATCG-TAATGCGAATACG
25820919 TGTAAGACC
1 TGTAAGACC
25820928 CTATCTAGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 40 0.93
44 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTAATGCGAATACG
Found at i:25846056 original size:22 final size:21
Alignment explanation
Indices: 25846008--25846056 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
25845998 AGCCTCCATT
*
25846008 ACGGGCGTGTCCTAGGGTCAC
1 ACGGGCGTGTCCTAGGATCAC
*
25846029 ACGGGCGTGTCCCTTGGATCAC
1 ACGGGCGTGT-CCTAGGATCAC
*
25846051 ATGGGC
1 ACGGGC
25846057 ATGTGAGCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.14, C:0.29, G:0.37, T:0.20
Consensus pattern (21 bp):
ACGGGCGTGTCCTAGGATCAC
Found at i:25858232 original size:46 final size:45
Alignment explanation
Indices: 25858180--25858396 Score: 256
Period size: 46 Copynumber: 4.7 Consensus size: 45
25858170 GTGTGTTCTC
*
25858180 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATG-GTAAGACCATGGTTGAAAGATACCATGGCAACA
25858226 TGATATGAAATGGATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGG-TAAGACCATGGTTGAAAGATACCATGGCAACA
*** ***
25858272 TGACGGGAAATGGATAAGACCATGGTTGAAAGATACCATGGCAGGG
1 TGATATGAAATGG-TAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
25858318 TGACATGAAATGAATAAGACCATGGTTGAAAGATACGATGGCAACA
1 TGATATGAAATG-GTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
25858364 TGATA-GAAAATAAGTAAGACTATAGTTGAAAGA
1 TGATATG-AAAT-GGTAAGACCATGGTTGAAAGA
25858397 CACTATGACA
Statistics
Matches: 148, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 146 0.99
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (45 bp):
TGATATGAAATGGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:25858343 original size:92 final size:92
Alignment explanation
Indices: 25858186--25858366 Score: 301
Period size: 92 Copynumber: 2.0 Consensus size: 92
25858176 TCTCTGATAT
* *
25858186 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGGATAAGACCATGG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGG
25858251 TTGAAAGATACCATGGCAACATGACGG
66 TTGAAAGATACCATGGCAACATGACGG
**
25858278 GAAATG-GATAAGACCATGGTTGAAAGATACCATGGCAGGGTGACATGAAATGAATAAGACCATG
1 GAAATGTG-TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATG
*
25858342 GTTGAAAGATACGATGGCAACATGA
65 GTTGAAAGATACCATGGCAACATGA
25858367 TAGAAAATAA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 1 0.01
92 82 0.99
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (92 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGG
TTGAAAGATACCATGGCAACATGACGG
Found at i:25858382 original size:92 final size:91
Alignment explanation
Indices: 25858193--25858396 Score: 291
Period size: 92 Copynumber: 2.2 Consensus size: 91
25858183 TATGAAATGT
* *
25858193 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGGATAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
* * *
25858258 ATACCATGGCAACATGACGGGAAATG
66 ATACCATGGCAACATGACAGAAAATA
**
25858284 GATAAGACCATGGTTGAAAGATACCATGGCAGGGTGACATGAAATGAATAAGACCATGGTTGAAA
1 G-TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAA
* *
25858349 GATACGATGGCAACATGATAGAAAATAA
65 GATACCATGGCAACATGACAGAAAAT-A
* *
25858377 GTAAGACTATAGTTGAAAGA
1 GTAAGACCATGGTTGAAAGA
25858397 CACTATGACA
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
91 1 0.01
92 98 0.98
93 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.20
Consensus pattern (91 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
ATACCATGGCAACATGACAGAAAATA
Found at i:25870243 original size:21 final size:22
Alignment explanation
Indices: 25870219--25870261 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
25870209 TTCTAATATG
*
25870219 TGAATTGAATTGAATTG-GTTA
1 TGAATTGAATTAAATTGAGTTA
*
25870240 TGAATTGTATTAAATTGAGTTA
1 TGAATTGAATTAAATTGAGTTA
25870262 AATTTACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (22 bp):
TGAATTGAATTAAATTGAGTTA
Found at i:25880607 original size:55 final size:54
Alignment explanation
Indices: 25880540--25880684 Score: 159
Period size: 53 Copynumber: 2.7 Consensus size: 54
25880530 GGAAAGGAAA
* *
25880540 TCATGTAAGACCATTTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGAT-C
1 TCATGTAAGACCATGTCAAGACATGGCAATGATAAA-TAC-ATAAGGCAAAGATAC
* * * * * * *
25880595 TCATATAAGACCATGCCAAGGCATGGCAATGGTGAATTCATAAGGCAAGGATAC
1 TCATGTAAGACCATGTCAAGACATGGCAATGATAAATACATAAGGCAAAGATAC
* *
25880649 -CACGTAAGACCATGTCAAGACATGGCAATGGTAAAT
1 TCATGTAAGACCATGTCAAGACATGGCAATGATAAAT
25880685 TTAAAAAGGA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 43 0.57
54 3 0.04
55 29 0.39
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.22
Consensus pattern (54 bp):
TCATGTAAGACCATGTCAAGACATGGCAATGATAAATACATAAGGCAAAGATAC
Found at i:25886466 original size:16 final size:17
Alignment explanation
Indices: 25886435--25886467 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25886425 TTCATAAGTA
25886435 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
25886452 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
25886468 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:25889865 original size:53 final size:53
Alignment explanation
Indices: 25889671--25889877 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 53
25889661 ATTAGGGTTT
* * *
25889671 AAGGATACC-CAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCAC-GTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCATAAGGC
* * ** * * * *
25889725 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTC-ATAAGGC
* * * * * *
25889780 AAAGATCCCATGTAAGACCATGCCAAGGCATGGC-TATGGTGAGTTCATAATGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAT-TGGTAAGTTCATAAGGC
* *
25889833 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
25889878 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 38 0.32
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:25897380 original size:40 final size:41
Alignment explanation
Indices: 25897107--25897365 Score: 425
Period size: 41 Copynumber: 6.4 Consensus size: 41
25897097 AATTATACAT
*
25897107 TAGCGGCGTTTTTGACAAAGCGCCGCT-AAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
*
25897147 TAGCAGCGTTTTTGGCAAAGCGCCGCT-AAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
*
25897187 TAGCGACGTTTTTGGCAAAGCGTCC-CTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCG-CCGCTAAAAAACAGAGCAA
*
25897228 TAGCGGCGTTTTTGGAAAAGCGCCGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
** *
25897269 TAGCGGCGTTTTTATCAAAGCGCCGCTAAAAAATAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
25897310 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
25897351 TAGCGGCGTTTTTGG
1 TAGCGGCGTTTTTGG
25897366 TAAAACGCAC
Statistics
Matches: 203, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
40 62 0.31
41 141 0.69
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
Found at i:25898368 original size:6 final size:6
Alignment explanation
Indices: 25898357--25898387 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
25898347 ACCCATATGA
*
25898357 TCCCTT TCCCTT TCCCTT TCGCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
25898388 GGTTTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.45, G:0.03, T:0.52
Consensus pattern (6 bp):
TCCCTT
Found at i:25898551 original size:2 final size:2
Alignment explanation
Indices: 25898546--25898571 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25898536 TTATTTTAAA
25898546 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25898572 GAAAAAACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25898692 original size:178 final size:178
Alignment explanation
Indices: 25898393--25898743 Score: 693
Period size: 178 Copynumber: 2.0 Consensus size: 178
25898383 CCTTTGGTTT
25898393 TGAAAAAACCCAATTCTTATATTCATTATTCTGTTCTTAATTTCGGTTTTGATTTTTCTATGTTG
1 TGAAAAAACCCAATTCTTATATTCATTATTCTGTTCTTAATTTCGGTTTTGATTTTTCTATGTTG
25898458 TTTCTTCAATACATTACAGAAGCATTTGGTCGTCTCGTCTACTTGTCTCTCCAAACTATTGTTGG
66 TTTCTTCAATACATTACAGAAGCATTTGGTCGTCTCGTCTACTTGTCTCTCCAAACTATTGTTGG
25898523 TAATTAAAAAATATTATTTTAAAATATATATATATATATATATATATA
131 TAATTAAAAAATATTATTTTAAAATATATATATATATATATATATATA
25898571 TGAAAAAACCCAATTCTTATATTCATTATTCTGTTCTTAATTTCGGTTTTGATTTTTCTATGTTG
1 TGAAAAAACCCAATTCTTATATTCATTATTCTGTTCTTAATTTCGGTTTTGATTTTTCTATGTTG
25898636 TTTCTTCAATACATTACAGAAGCATTTGGTCGTCTCGTCTACTTGTCTCTCCAAACTATTGTTGG
66 TTTCTTCAATACATTACAGAAGCATTTGGTCGTCTCGTCTACTTGTCTCTCCAAACTATTGTTGG
*
25898701 TAATTAAAAAATATTATTTTAATATATATATATATATATATAT
131 TAATTAAAAAATATTATTTTAAAATATATATATATATATATAT
25898744 CAAAATGGGT
Statistics
Matches: 172, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 172 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.46
Consensus pattern (178 bp):
TGAAAAAACCCAATTCTTATATTCATTATTCTGTTCTTAATTTCGGTTTTGATTTTTCTATGTTG
TTTCTTCAATACATTACAGAAGCATTTGGTCGTCTCGTCTACTTGTCTCTCCAAACTATTGTTGG
TAATTAAAAAATATTATTTTAAAATATATATATATATATATATATATA
Found at i:25899228 original size:7 final size:7
Alignment explanation
Indices: 25899213--25899244 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
25899203 AAATCTTTAA
*
25899213 AAAAATG
1 AAAATTG
25899220 AAAATTG
1 AAAATTG
25899227 AAAATTG
1 AAAATTG
25899234 AAAATTG
1 AAAATTG
25899241 AAAA
1 AAAA
25899245 ATAAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (7 bp):
AAAATTG
Found at i:25899251 original size:14 final size:14
Alignment explanation
Indices: 25899213--25899250 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
25899203 AAATCTTTAA
25899213 AAAAATGAAAATTG
1 AAAAATGAAAATTG
*
25899227 AAAATTGAAAATTG
1 AAAAATGAAAATTG
25899241 AAAAAT-AAAA
1 AAAAATGAAAA
25899251 AAATTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (14 bp):
AAAAATGAAAATTG
Found at i:25899252 original size:22 final size:22
Alignment explanation
Indices: 25899227--25899283 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
25899217 ATGAAAATTG
25899227 AAAATTGAAAATTGAAAAA-TAAA
1 AAAATT-AAAATT-AAAAACTAAA
*
25899250 AAAATTAAAATTAAAAACTTAA
1 AAAATTAAAATTAAAAACTAAA
*
25899272 AAACTTAAAATT
1 AAAATTAAAATT
25899284 TTAATATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 5 0.16
22 20 0.65
23 6 0.19
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAATTAAAATTAAAAACTAAA
Found at i:25907839 original size:24 final size:25
Alignment explanation
Indices: 25907808--25907865 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
25907798 ATTTTTATTA
* *
25907808 TTTA-TTTTAGTTTATTA-TAAATT
1 TTTATTTTTAGTTTAATAGAAAATT
*
25907831 TTTATTTTTATTTTAATAGAAAATT
1 TTTATTTTTAGTTTAATAGAAAATT
*
25907856 TTTATATTTA
1 TTTATTTTTA
25907866 TATCATGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 4 0.14
24 11 0.38
25 14 0.48
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (25 bp):
TTTATTTTTAGTTTAATAGAAAATT
Found at i:25908053 original size:42 final size:42
Alignment explanation
Indices: 25908007--25908114 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
25907997 AAGTCTTGGT
* **
25908007 CTTTAGTGGCGTTTTATAAAAAGTGTCGCTAAAGA-CAGGGAC
1 CTTTAGCGGCGTTTTATAAAAAGCATCGCTAAAGACCA-GGAC
* * *
25908049 CTTTAGCGGCATTTTCTAAAAAAGCATCGTTAAAGACCAGGAC
1 CTTTAGCGGCGTTTTAT-AAAAAGCATCGCTAAAGACCAGGAC
*
25908092 CTTTAGCGGCGCTTTTTTAAAAA
1 CTTTAGCGGCG-TTTTATAAAAA
25908115 ACGCCGCTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 14 0.25
43 34 0.62
44 7 0.13
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTATAAAAAGCATCGCTAAAGACCAGGAC
Found at i:25914932 original size:27 final size:27
Alignment explanation
Indices: 25914902--25914960 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
25914892 ATTAACATTA
25914902 TCAAAATCTCCTTCTTTCATGTACTAT
1 TCAAAATCTCCTTCTTTCATGTACTAT
*
25914929 TCAAACTCTCCTTCTTTCATGTACTAT
1 TCAAAATCTCCTTCTTTCATGTACTAT
25914956 TCAAA
1 TCAAA
25914961 GTGCAGATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.27, C:0.27, G:0.03, T:0.42
Consensus pattern (27 bp):
TCAAAATCTCCTTCTTTCATGTACTAT
Found at i:25915523 original size:5 final size:5
Alignment explanation
Indices: 25915513--25915561 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
25915503 CATTTTTATG
*
25915513 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AACAT AATA
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATA
25915562 GACAAATAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
AATAT
Found at i:25916671 original size:15 final size:14
Alignment explanation
Indices: 25916644--25916670 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25916634 GGCTATAGTG
25916644 AAATATTAAAAAAT
1 AAATATTAAAAAAT
25916658 AAATATTAAAAAA
1 AAATATTAAAAAA
25916671 AGGAGACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATATTAAAAAAT
Found at i:25927857 original size:21 final size:21
Alignment explanation
Indices: 25927833--25927874 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
25927823 AAGAAAGGTC
*
25927833 AAAGCCCAGCTAAGTGAAGAA
1 AAAGCCCAACTAAGTGAAGAA
25927854 AAAGCCCAACTAAGTGAAGAA
1 AAAGCCCAACTAAGTGAAGAA
25927875 TTTGAGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.19, G:0.21, T:0.10
Consensus pattern (21 bp):
AAAGCCCAACTAAGTGAAGAA
Found at i:25930055 original size:28 final size:28
Alignment explanation
Indices: 25930015--25930126 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
25930005 GGCCAAGCAA
* * *
25930015 AATATCTCTACAGTGACCAGTGTTACTG
1 AATATCTCTACAGAGACCACTATTACTG
*
25930043 AATATCTCTACAGAGACCACTATTACTT
1 AATATCTCTACAGAGACCACTATTACTG
* ** *
25930071 AATGTCTCTAGGGAGACCACAATTACTG
1 AATATCTCTACAGAGACCACTATTACTG
* * *
25930099 AATGTCTCTTC-GAAGACCACTGTTACTG
1 AATATCTCTACAG-AGACCACTATTACTG
25930127 TATGTGTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
27 1 0.01
28 69 0.99
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (28 bp):
AATATCTCTACAGAGACCACTATTACTG
Found at i:25937494 original size:12 final size:12
Alignment explanation
Indices: 25937476--25937509 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25937466 CCATGTGTAG
25937476 CACACGGCTTAC
1 CACACGGCTTAC
* *
25937488 TACACGGCCTAC
1 CACACGGCTTAC
25937500 CACACGGCTT
1 CACACGGCTT
25937510 TGTGACATTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.24, C:0.41, G:0.18, T:0.18
Consensus pattern (12 bp):
CACACGGCTTAC
Found at i:25949267 original size:6 final size:6
Alignment explanation
Indices: 25949256--25949280 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25949246 GAACCAAAAT
25949256 AAATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA A
25949281 GAAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:25956680 original size:2 final size:2
Alignment explanation
Indices: 25956673--25956698 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25956663 GCTCTTGCAC
25956673 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25956699 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25957507 original size:40 final size:40
Alignment explanation
Indices: 25957402--25957550 Score: 194
Period size: 40 Copynumber: 3.8 Consensus size: 40
25957392 TGGATGATAA
* * * **
25957402 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
25957442 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
25957481 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
25957521 CCGGGCTATGTCCCGAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
25957551 ATAGCTATAT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 34 0.35
40 61 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:25959995 original size:2 final size:2
Alignment explanation
Indices: 25959988--25960016 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25959978 TCATGACATG
25959988 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25960017 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25970638 original size:78 final size:78
Alignment explanation
Indices: 25970505--25970689 Score: 246
Period size: 78 Copynumber: 2.4 Consensus size: 78
25970495 AACCAAGCAG
* * *
25970505 AGCCTTTGTTGAAAGTCATCTGTAAATCCCTTGGGGCAAATTATCTAAAAAGCCTATGTCACGTG
1 AGCCTTTGTTGCAAGTCATCTGTAAAGCCCTTGGGGCAAATTATCTAAAAAGCCTATGTCACATG
*
25970570 TTGTTATCTGGAA
66 TTGTTATCTAGAA
* * * * * **
25970583 AGCCTTTGTGGCAAGTCATCTGTAAAGCCCTTGGGGCTAATTATTTGAAACGCCTATGTGGCATG
1 AGCCTTTGTTGCAAGTCATCTGTAAAGCCCTTGGGGCAAATTATCTAAAAAGCCTATGTCACATG
25970648 TTGTTATCTAGAA
66 TTGTTATCTAGAA
*
25970661 AGCCTTTGTTACAAGTCATCTAG-AAAGCC
1 AGCCTTTGTTGCAAGTCATCT-GTAAAGCC
25970690 TATATGGCGA
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 92 0.99
79 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (78 bp):
AGCCTTTGTTGCAAGTCATCTGTAAAGCCCTTGGGGCAAATTATCTAAAAAGCCTATGTCACATG
TTGTTATCTAGAA
Found at i:25973929 original size:12 final size:12
Alignment explanation
Indices: 25973912--25973937 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25973902 GTACTACACA
25973912 GACCATTCAGAT
1 GACCATTCAGAT
25973924 GACCATTCAGAT
1 GACCATTCAGAT
25973936 GA
1 GA
25973938 ATTCCACATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (12 bp):
GACCATTCAGAT
Found at i:26002521 original size:6 final size:6
Alignment explanation
Indices: 26002510--26002626 Score: 78
Period size: 6 Copynumber: 18.8 Consensus size: 6
26002500 TATCAAAACT
* * *
26002510 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
26002559 AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC AGTATC AGGTAA-C
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
26002609 AGAATC AAAAATC AGAAT
1 AGAATC -AGAATC AGAAT
26002627 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
5 5 0.06
6 66 0.76
7 13 0.15
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:26002584 original size:37 final size:38
Alignment explanation
Indices: 26002543--26002626 Score: 143
Period size: 37 Copynumber: 2.2 Consensus size: 38
26002533 TAGGTGACAG
*
26002543 AATCAGAATTAGAATCAGTATCAGGTAACAGAATC-AA
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
*
26002580 AATCAGAATCAGTATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
26002618 AATCAGAAT
1 AATCAGAAT
26002627 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 33 0.75
38 11 0.25
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.21
Consensus pattern (38 bp):
AATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
Found at i:26002615 original size:31 final size:31
Alignment explanation
Indices: 26002510--26002597 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
26002500 TATCAAAACT
* * *
26002510 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
26002541 AGAATCAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
26002572 AGAATCAAAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAGTATCAG
26002598 TATCAGGTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:26002854 original size:27 final size:26
Alignment explanation
Indices: 26002763--26002857 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
26002753 GCTCAGGTAT
* * *
26002763 CAGATATTGTGACAGAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
26002790 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* * *
26002816 CAAATATTTGTGGCATAGCCATCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
*
26002844 CAGATAATGTGGCA
1 CAGATATTGTGGCA
26002858 ATGCCACTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.11
27 43 0.77
28 7 0.12
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:26003571 original size:27 final size:27
Alignment explanation
Indices: 26003514--26003959 Score: 502
Period size: 27 Copynumber: 16.3 Consensus size: 27
26003504 GGGGCAAAAT
* * *
26003514 GGTAATTTTACCCTACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
26003540 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26003567 AGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
26003594 GATAATTCTACCCTACAGGCGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26003621 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26003648 GGTAATTCTACCCTACAGGAGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
26003675 GGTAATTCTACCCTACTACCCTACAGGGGTATTTC
1 GGTAA---T----T-CTACCCTACAGGGGTATTTC
*
26003710 AGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
26003736 TGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
26003764 GGTAATTCTACCCAACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
26003791 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26003818 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
26003845 GGTAATTTTACACTATAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* * *
26003872 GATAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
26003899 GGTAATTCTATCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26003926 GGTATTTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
26003953 GGTAATT
1 GGTAATT
26003960 TTGTAAATTG
Statistics
Matches: 354, Mismatches: 53, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
26 18 0.05
27 306 0.86
28 5 0.01
30 1 0.00
32 1 0.00
34 1 0.00
35 22 0.06
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:26003701 original size:35 final size:35
Alignment explanation
Indices: 26003655--26003725 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
26003645 TTTGGTAATT
*
26003655 CTACCCTACAGGAGTATTCCGGTAATTCTACCCTA
1 CTACCCTACAGGAGTATTCCAGTAATTCTACCCTA
* *
26003690 CTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
1 CTACCCTACAGGAGTATTCCAGTAATTCTACCCTA
26003725 C
1 C
26003726 AGGGGTATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (35 bp):
CTACCCTACAGGAGTATTCCAGTAATTCTACCCTA
Found at i:26004082 original size:134 final size:134
Alignment explanation
Indices: 26003944--26004235 Score: 320
Period size: 134 Copynumber: 2.2 Consensus size: 134
26003934 TACCCTACAT
* * *
26003944 GGGTATTTCGGTAATTTTGTAAA-TTGAGGATAAAACG-TAATTCTATAAATCAAGGGTACTTTG
1 GGGTATTTTGGTAATTTTGTAAACTAG-GGATAAAACGATAATTCTACAAA-CAAGGGTACTTTG
** * * *
26004007 GTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTC-GAGGGTATTTTAGTAATTTCAC
64 GTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAA-ACAAAGGGTATTTTAGTAATTTCAC
*
26004071 AAATCAG
128 AAACCAG
** * **** * * *
26004078 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTGTAAACTAGGGATAAAACGATAATTCTACAAACAAGGGTACTTTGGT
*** * *
26004143 AATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAA
66 AATTTTACAAACCAAGGGTATTTCAATAATTTTACAAACAAAGGGTATTTTAGTAATTTCACAAA
26004208 CCAG
131 CCAG
26004212 GGGTATTTTGGTAATTTTGTAAAC
1 GGGTATTTTGGTAATTTTGTAAAC
26004236 CAAGGGTATT
Statistics
Matches: 129, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
133 1 0.01
134 116 0.90
135 12 0.09
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (134 bp):
GGGTATTTTGGTAATTTTGTAAACTAGGGATAAAACGATAATTCTACAAACAAGGGTACTTTGGT
AATTTTACAAACCAAGGGTATTTCAATAATTTTACAAACAAAGGGTATTTTAGTAATTTCACAAA
CCAG
Found at i:26004345 original size:27 final size:27
Alignment explanation
Indices: 26003997--26004336 Score: 373
Period size: 27 Copynumber: 12.6 Consensus size: 27
26003987 TATAAATCAA
* **
26003997 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
*** **
26004023 AGGGTATTTCAATAATTTTACAAGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
26004050 AGGGTATTTTAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
26004078 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
26004105 GGGTATTTTGATAATTTTACAAACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
*
26004131 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
26004158 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
26004185 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
26004212 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
26004239 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
26004266 GGGTATTTTGGTAATTTTGCTAATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
26004292 AGGGTATTTTAGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
26004320 GGGTACTTTGGTAATTT
1 GGGTATTTTGGTAATTT
26004337 GGTAAACTAA
Statistics
Matches: 269, Mismatches: 40, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
26 26 0.10
27 241 0.90
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:26019420 original size:42 final size:42
Alignment explanation
Indices: 26019301--26019514 Score: 206
Period size: 42 Copynumber: 5.1 Consensus size: 42
26019291 ACACACGATA
* *
26019301 TCATACTAATGCCATATCCCAGATATGGTCTTACATG-GGATC
1 TCATACTAATGCCATATCCCAGATATGGTCTTACACGAAG-TC
* * * *
26019343 TCGTA-TCGATGCCAATAGCCCAGCA-AGGGTCTTACACGACA-TC
1 TCATACT-AATGCC-ATATCCCAG-ATATGGTCTTACACGA-AGTC
26019386 TCATA-TCAATGCCATATCCCAGATATGGTCTTACACGAAGTC
1 TCATACT-AATGCCATATCCCAGATATGGTCTTACACGAAGTC
* * * *
26019428 TCATACTGATGTCATATCCTAGATGTGGTCTTACACGAAGTC
1 TCATACTAATGCCATATCCCAGATATGGTCTTACACGAAGTC
* * *
26019470 TCATACTAACGTCATACCCCAGATATGGTCTTACAC-ATAGTC
1 TCATACTAATGCCATATCCCAGATATGGTCTTACACGA-AGTC
26019512 TCA
1 TCA
26019515 GTAACCCTAA
Statistics
Matches: 144, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
41 4 0.03
42 106 0.74
43 33 0.23
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
TCATACTAATGCCATATCCCAGATATGGTCTTACACGAAGTC
Found at i:26022972 original size:28 final size:27
Alignment explanation
Indices: 26022927--26022993 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
26022917 AAATGTGCAA
*
26022927 AATTATTATA-AAAATAAT-TAAAATT
1 AATTATTTTATAAAATAATCTAAAATT
* *
26022952 CAATATGTTTTATAAAATAATCTTAAATT
1 -AAT-TATTTTATAAAATAATCTAAAATT
26022981 AATTATTTTATAA
1 AATTATTTTATAA
26022994 TAAAAGCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 3 0.09
27 14 0.41
28 11 0.32
29 6 0.18
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
AATTATTTTATAAAATAATCTAAAATT
Found at i:26030681 original size:46 final size:46
Alignment explanation
Indices: 26030631--26030792 Score: 134
Period size: 46 Copynumber: 3.5 Consensus size: 46
26030621 GACGAGTGCT
* *
26030631 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGGCG-TAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATC-GACTACGAGACGATAA-CC
* * * **
26030677 AGTGTAAGACATGTCTGGAACATGCGTCGACTACGAGACGATAATT
1 AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGACGATAACC
* * * *
26030723 AGTGTAAGACCATGTTTGGGACATGGCTTCGACT-TGATA-TATAAGCC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACTACGAGACGATAA-CC
*
26030770 AGTGTAAGATCATGTCTGGGACA
1 AGTGTAAGA-CATGTTTGGGACA
26030793 CGACATCGGC
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
45 3 0.03
46 44 0.47
47 39 0.41
48 8 0.09
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGACGATAACC
Found at i:26031994 original size:21 final size:22
Alignment explanation
Indices: 26031954--26031995 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26031944 GTCAAAGTGA
26031954 TCACACGGGCGTGTTACCCCTT
1 TCACACGGGCGTGTTACCCCTT
26031976 TCACACGGGCGTG-TACCCCT
1 TCACACGGGCGTGTTACCCCT
26031996 GTGTCAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.14, C:0.38, G:0.24, T:0.24
Consensus pattern (22 bp):
TCACACGGGCGTGTTACCCCTT
Found at i:26038337 original size:46 final size:46
Alignment explanation
Indices: 26038242--26038356 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 46
26038232 GTGAGCTAGC
* * * *
26038242 GTAAGACAATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGT
1 GTAAGAC-ATGTCTGGGACAT-GCATCGACATCGAGACGAGAGCCAGT
*
26038290 GTAAGACATGTCTGGGACATGCATCGACCTCGAGACGTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGACATCGAGACG-AGAGCCAGT
*
26038336 GTAAGACATGTTTGGGACATG
1 GTAAGACATGTCTGGGACATG
26038357 TGTCGGCTAC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
46 39 0.65
47 14 0.23
48 7 0.12
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGACATCGAGACGAGAGCCAGT
Found at i:26039650 original size:21 final size:22
Alignment explanation
Indices: 26039610--26039651 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26039600 GTCAAATTGA
26039610 TCACACGGGCGTGTTGCCCCTT
1 TCACACGGGCGTGTTGCCCCTT
*
26039632 TCACAGGGGCGTG-TGCCCCT
1 TCACACGGGCGTGTTGCCCCT
26039652 GTGTCAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.24
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCCTT
Found at i:26043476 original size:23 final size:24
Alignment explanation
Indices: 26043432--26043477 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
26043422 ATATAAAAAC
* *
26043432 AAATTTTTAATAATAAAAATAATA
1 AAATTTGTAATAAGAAAAATAATA
26043456 AAATTTGTAAT-AGAAAAATAAT
1 AAATTTGTAATAAGAAAAATAAT
26043478 TTACTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATTTGTAATAAGAAAAATAATA
Found at i:26046921 original size:13 final size:13
Alignment explanation
Indices: 26046905--26046929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26046895 TATATTAATC
26046905 TTTTATCTTATTG
1 TTTTATCTTATTG
26046918 TTTTATCTTATT
1 TTTTATCTTATT
26046930 ATATTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTATCTTATTG
Found at i:26056833 original size:7 final size:7
Alignment explanation
Indices: 26056816--26056848 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
26056806 AAGCTTTCGT
26056816 TTTTTTC
1 TTTTTTC
26056823 -TTTTTC
1 TTTTTTC
26056829 TTTTTTC
1 TTTTTTC
26056836 TTTTTTC
1 TTTTTTC
26056843 TTTTTT
1 TTTTTT
26056849 AAATATCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:26056834 original size:14 final size:15
Alignment explanation
Indices: 26056810--26056848 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
26056800 TCAAACAAGC
26056810 TTTCGTTTTTTTC-TT
1 TTTC-TTTTTTTCTTT
26056825 TTTC-TTTTTTCTTT
1 TTTCTTTTTTTCTTT
26056839 TTTCTTTTTT
1 TTTCTTTTTT
26056849 AAATATCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.32
14 6 0.27
15 9 0.41
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.85
Consensus pattern (15 bp):
TTTCTTTTTTTCTTT
Found at i:26057286 original size:14 final size:15
Alignment explanation
Indices: 26057267--26057304 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
26057257 TCTTTCATTA
*
26057267 AAAATAACTTTC-GG
1 AAAATAACTTGCTGG
26057281 AAAATAA-TTGCTGG
1 AAAATAACTTGCTGG
26057295 AAAATAACTT
1 AAAATAACTT
26057305 ACTTTTCTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 3 0.14
14 16 0.76
15 2 0.10
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (15 bp):
AAAATAACTTGCTGG
Found at i:26070988 original size:22 final size:22
Alignment explanation
Indices: 26070960--26071003 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
26070950 TGAGGTAGTG
26070960 TAAGACCATGTCT-GGAACATGA
1 TAAGACCATGTCTAGG-ACATGA
26070982 TAAGACCATGTCTAGGACATGA
1 TAAGACCATGTCTAGGACATGA
26071004 CATCGACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (22 bp):
TAAGACCATGTCTAGGACATGA
Found at i:26075915 original size:71 final size:71
Alignment explanation
Indices: 26075799--26075943 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
26075789 TAGTTTTAGG
26075799 GAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAATAATTGAGTGACTATGAC
1 GAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAATAATTGAGTGACTATGAC
26075864 TCGTGT
66 TCGTGT
26075870 GAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAATAATTGAGTGACTATGAC
1 GAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAATAATTGAGTGACTATGAC
26075935 TCGTGT
66 TCGTGT
26075941 GAA
1 GAA
26075944 CAGCTTGATG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34
Consensus pattern (71 bp):
GAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAATAATTGAGTGACTATGAC
TCGTGT
Found at i:26076772 original size:490 final size:490
Alignment explanation
Indices: 26075852--26076826 Score: 1860
Period size: 490 Copynumber: 2.0 Consensus size: 490
26075842 TAAATAATTG
*
26075852 AGTGACTATGACTCGTGTGAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAA
1 AGTGACTATGACTCATGTGAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAA
26075917 TAATTGAGTGACTATGACTCGTGTGAACAGCTTGATGTGAGCATTAATAAGTAAATTGTGAAATA
66 TAATTGAGTGACTATGACTCGTGTGAACAGCTTGATGTGAGCATTAATAAGTAAATTGTGAAATA
26075982 GTACTTACAAGAATCTTATATACATTAAGGATGTGGAATGGAAAGGAGAAAGAGGAAAATAAATG
131 GTACTTACAAGAATCTTATATACATTAAGGATGTGGAATGGAAAGGAGAAAGAGGAAAATAAATG
*
26076047 ATATATGTTTATAAGAAAACAGTATGAGAATGATGCATATCATGACATGTATATATATAACTAGT
196 ATATATGTTTATAAGAAAACAGTATGAGAATGATACATATCATGACATGTATATATATAACTAGT
26076112 TTCAATATGATGCTTGTTGGGTATGAAGTTGGATTGAAATGTCTCAAGCAAGTATTTTATTATGC
261 TTCAATATGATGCTTGTTGGGTATGAAGTTGGATTGAAATGTCTCAAGCAAGTATTTTATTATGC
26076177 TCATCTGAAATGTGGTATTTTATGAAGATATGATCTAGCTTTAAATATGAATGCTTGATGATTAA
326 TCATCTGAAATGTGGTATTTTATGAAGATATGATCTAGCTTTAAATATGAATGCTTGATGATTAA
*
26076242 GCTGAAAATATTTGGTAAGATGATAATCATGGTATAAAAGTATAAGTGGTACCATAATAGACAAG
391 GCTAAAAATATTTGGTAAGATGATAATCATGGTATAAAAGTATAAGTGGTACCATAATAGACAAG
26076307 GTAAAATGAGTATGAGAGATACATGTATGAGTATA
456 GTAAAATGAGTATGAGAGATACATGTATGAGTATA
26076342 AGTGACTATGACTCATGTGAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAA
1 AGTGACTATGACTCATGTGAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAA
26076407 TAATTGAGTGACTATGACTCGTGTGAACAGCTTGATGTGAGCATTAATAAGTAAATTGTGAAATA
66 TAATTGAGTGACTATGACTCGTGTGAACAGCTTGATGTGAGCATTAATAAGTAAATTGTGAAATA
* * *
26076472 GTACTTACAAGAATCTTATATACATTAAGGATGTGGAATGGAGAGGAGGAGGAGGAAAATAAATG
131 GTACTTACAAGAATCTTATATACATTAAGGATGTGGAATGGAAAGGAGAAAGAGGAAAATAAATG
26076537 ATATATGTTTATAAGAAAACAGTATGAGAATGATACATATCATGACATGTATATATATAACTAGT
196 ATATATGTTTATAAGAAAACAGTATGAGAATGATACATATCATGACATGTATATATATAACTAGT
* *
26076602 TTCAATATGATGCTTGTTGGGTATGAAGTTGGATTGAAATGTCTCAGGCAAGTATTTTATTCTGC
261 TTCAATATGATGCTTGTTGGGTATGAAGTTGGATTGAAATGTCTCAAGCAAGTATTTTATTATGC
26076667 TCATCTGAAATGTGGTATTTTATGAAGATATGATCTAGCTTTAAATATGAATGCTTGATGATTAA
326 TCATCTGAAATGTGGTATTTTATGAAGATATGATCTAGCTTTAAATATGAATGCTTGATGATTAA
*
26076732 GCTAAAAATATTTGGTAAGATGATAATCATGGTATAAAAGTATAAGTGGTACCATAATAGACAGG
391 GCTAAAAATATTTGGTAAGATGATAATCATGGTATAAAAGTATAAGTGGTACCATAATAGACAAG
*
26076797 GTAAGATGAGTATGAGAGATACATGTATGA
456 GTAAAATGAGTATGAGAGATACATGTATGA
26076827 TGACATACAA
Statistics
Matches: 475, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
490 475 1.00
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (490 bp):
AGTGACTATGACTCATGTGAAAATTTACGGATCTTAATTTGAAGCTCTGTAGCTCGAATTATAAA
TAATTGAGTGACTATGACTCGTGTGAACAGCTTGATGTGAGCATTAATAAGTAAATTGTGAAATA
GTACTTACAAGAATCTTATATACATTAAGGATGTGGAATGGAAAGGAGAAAGAGGAAAATAAATG
ATATATGTTTATAAGAAAACAGTATGAGAATGATACATATCATGACATGTATATATATAACTAGT
TTCAATATGATGCTTGTTGGGTATGAAGTTGGATTGAAATGTCTCAAGCAAGTATTTTATTATGC
TCATCTGAAATGTGGTATTTTATGAAGATATGATCTAGCTTTAAATATGAATGCTTGATGATTAA
GCTAAAAATATTTGGTAAGATGATAATCATGGTATAAAAGTATAAGTGGTACCATAATAGACAAG
GTAAAATGAGTATGAGAGATACATGTATGAGTATA
Found at i:26077859 original size:13 final size:13
Alignment explanation
Indices: 26077841--26077883 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
26077831 TTTAATAATA
26077841 AAATAAAGAAATG
1 AAATAAAGAAATG
26077854 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
26077866 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
26077880 AAAT
1 AAAT
26077884 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:26077871 original size:17 final size:18
Alignment explanation
Indices: 26077837--26077883 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
26077827 ATAGTTTAAT
* *
26077837 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
26077855 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
26077872 AATAAAAGAAAT
1 AATAAAAGAAAT
26077884 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:26077875 original size:9 final size:9
Alignment explanation
Indices: 26077849--26077883 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
26077839 TAAAATAAAG
26077849 AAATGAAAT
1 AAATGAAAT
26077858 AAA-GAAAT
1 AAATGAAAT
26077866 AAATGAAAT
1 AAATGAAAT
*
26077875 AAAAGAAAT
1 AAATGAAAT
26077884 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:26079513 original size:22 final size:22
Alignment explanation
Indices: 26079454--26079513 Score: 52
Period size: 23 Copynumber: 2.6 Consensus size: 22
26079444 TTGAATTGAG
*
26079454 AAAGTGAATTATAATTGATACTA
1 AAAGTGAGTTA-AATTGATACTA
*
26079477 AAA-TGAGATAGAAATT-ATACTGA
1 AAAGTGAG-T-TAAATTGATACT-A
26079500 AAAGTGAGTTAAAT
1 AAAGTGAGTTAAAT
26079514 ACCCTATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
22 12 0.40
23 13 0.43
24 5 0.17
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.30
Consensus pattern (22 bp):
AAAGTGAGTTAAATTGATACTA
Found at i:26079676 original size:51 final size:48
Alignment explanation
Indices: 26079616--26079733 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 48
26079606 ATGTGCCGAC
26079616 TACTGTTACTGTTACCGTTACTATTACCGATTC-GACACTTTGTGTGTCAAA
1 TACTGTTACTGTTACCGTTACTATT---GATTCAG-CACTTTGTGTGTCAAA
**
26079667 TACTGTTACTGTTACCG-T--TATTGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACCGTTACTATTGATTCAGCACTTTGTGTGTCAAA
* *
26079712 TACTGTTACTATTACTGTTACT
1 TACTGTTACTGTTACCGTTACT
26079734 GTTTCGGATT
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
45 34 0.58
46 2 0.03
48 5 0.08
50 1 0.02
51 17 0.29
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (48 bp):
TACTGTTACTGTTACCGTTACTATTGATTCAGCACTTTGTGTGTCAAA
Found at i:26079958 original size:18 final size:18
Alignment explanation
Indices: 26079917--26079951 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26079907 GATTATTTAT
26079917 GAATAATTGACTGTTACC
1 GAATAATTGACTGTTACC
26079935 GAATAATTGACTGTTAC
1 GAATAATTGACTGTTAC
26079952 TGGATAACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (18 bp):
GAATAATTGACTGTTACC
Found at i:26082167 original size:34 final size:33
Alignment explanation
Indices: 26082120--26082202 Score: 112
Period size: 34 Copynumber: 2.5 Consensus size: 33
26082110 ATACTACATG
* *
26082120 ATGCTACTGATACTGTGATAGGCTAAGGCCCTA
1 ATGCTACTGATACTGTGATAGGCTAAGACCCAA
*
26082153 ATGCATACTGATACTGTGATGGGCTAAGACCCAA
1 ATGC-TACTGATACTGTGATAGGCTAAGACCCAA
*
26082187 ATCGTTACTGATACTG
1 AT-GCTACTGATACTG
26082203 AAAGGGGCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
33 4 0.09
34 39 0.89
35 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (33 bp):
ATGCTACTGATACTGTGATAGGCTAAGACCCAA
Found at i:26086978 original size:111 final size:111
Alignment explanation
Indices: 26086783--26087002 Score: 359
Period size: 111 Copynumber: 2.0 Consensus size: 111
26086773 TCTAATCCTA
* *
26086783 TTAAAATTATGACAACTTTACTGTAAAAGACTCTATGAGAAAATATATTTAATAGTTATATATTC
1 TTAAAATCATGACAACTTTACTGTAAAAGAATCTATGAGAAAATATATTTAATAGTTATATATTC
* *
26086848 AATGGGCTTAATATGACCAAATGATTTATTTCTATTTTCAAACTCG
66 AATGGGCTTAATATAACCAAATGATTTATTTCCATTTTCAAACTCG
* * *
26086894 TTAAAATCATGACAATTTTACTGTAAAAGAATCTATGAGAAAATATATTTAATAGTTCTATATTT
1 TTAAAATCATGACAACTTTACTGTAAAAGAATCTATGAGAAAATATATTTAATAGTTATATATTC
* *
26086959 AATGGGTTTACTATAACCAAATGATTTATTTCCATTTTCAAACT
66 AATGGGCTTAATATAACCAAATGATTTATTTCCATTTTCAAACT
26087003 TCATTTAATT
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 100 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (111 bp):
TTAAAATCATGACAACTTTACTGTAAAAGAATCTATGAGAAAATATATTTAATAGTTATATATTC
AATGGGCTTAATATAACCAAATGATTTATTTCCATTTTCAAACTCG
Found at i:26087160 original size:58 final size:58
Alignment explanation
Indices: 26087039--26087162 Score: 160
Period size: 57 Copynumber: 2.1 Consensus size: 58
26087029 ATTTCCAAGT
* * *
26087039 CATTTTCATTTTTCATTTTGAAGAAAACCACATTCATTTTCAAATGTTTTCATTTCTT
1 CATTTTCATTTTTCATTTTGAAGAAAACCACATTCATTTCCAAATATTTTCATTTCTC
* * * * *
26087097 GATTTTTA-TTTTCATTTTGGAGAAAATCATATTCATTTCCAAATATTTCTCATTTCTC
1 CATTTTCATTTTTCATTTTGAAGAAAACCACATTCATTTCCAAATATTT-TCATTTCTC
26087155 CATTTTCA
1 CATTTTCA
26087163 CAATTTGTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 35 0.64
58 20 0.36
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (58 bp):
CATTTTCATTTTTCATTTTGAAGAAAACCACATTCATTTCCAAATATTTTCATTTCTC
Found at i:26089872 original size:25 final size:25
Alignment explanation
Indices: 26089783--26089915 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
26089773 GTAGCTCTGA
* **
26089783 AGAGCCATTAATTGAGAAGCTCTGG
1 AGAGCCATTAATCGAGAAGCTCCAG
* * *
26089808 ATAGCCA-TATATCGAGAAGTTCAAG
1 AGAGCCATTA-ATCGAGAAGCTCCAG
* * *
26089833 TGAGCCA-T-ATCGGGAAGCTCCGG
1 AGAGCCATTAATCGAGAAGCTCCAG
* *
26089856 AGAGCCATTAATCGGGAAGCTCACAA
1 AGAGCCATTAATCGAGAAGCTC-CAG
* * * *
26089882 AGAGCCTTTAATCGAAAAACTCACAA
1 AGAGCCATTAATCGAGAAGCTC-CAG
26089908 AGAGCCAT
1 AGAGCCAT
26089916 ATAACGGGAC
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
23 17 0.20
24 3 0.04
25 35 0.41
26 30 0.35
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (25 bp):
AGAGCCATTAATCGAGAAGCTCCAG
Found at i:26089892 original size:26 final size:26
Alignment explanation
Indices: 26089841--26089930 Score: 85
Period size: 26 Copynumber: 3.5 Consensus size: 26
26089831 AGTGAGCCAT
** *
26089841 ATCGGGAAGCTC-CGGAGAGCCATTA
1 ATCGGGAAGCTCACAAAGAGCCTTTA
26089866 ATCGGGAAGCTCACAAAGAGCCTTTA
1 ATCGGGAAGCTCACAAAGAGCCTTTA
** * *
26089892 ATCGAAAAACTCACAAAGAGCCATATA
1 ATCGGGAAGCTCACAAAGAGCC-TTTA
*
26089919 A-CGGGACGCTCA
1 ATCGGGAAGCTCA
26089931 TAATAGTTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
25 12 0.23
26 36 0.69
27 4 0.08
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
ATCGGGAAGCTCACAAAGAGCCTTTA
Found at i:26095811 original size:17 final size:17
Alignment explanation
Indices: 26095791--26095833 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
26095781 ACATCCTGGT
26095791 TGAGCTCACATCTTTGC
1 TGAGCTCACATCTTTGC
* *
26095808 TGAGCTCACATGTTTGG
1 TGAGCTCACATCTTTGC
26095825 TGAGCTCAC
1 TGAGCTCAC
26095834 GGTTGTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.33
Consensus pattern (17 bp):
TGAGCTCACATCTTTGC
Found at i:26096957 original size:23 final size:23
Alignment explanation
Indices: 26096888--26096962 Score: 55
Period size: 24 Copynumber: 3.2 Consensus size: 23
26096878 CTTATGAGCA
*
26096888 TCCCGTTATTAGCCCTCTCG-AGCT
1 TCCCGTTA-TAGCTCT-TCGAAGCT
* * *
26096912 TACCGTATATGGTTCTT-GCAAGCT
1 TCCCGT-TATAGCTCTTCG-AAGCT
*
26096936 TCCCGTTATAGCTCTTCGAAGCG
1 TCCCGTTATAGCTCTTCGAAGCT
26096959 TCCC
1 TCCC
26096963 ATTAGGTTGT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
22 1 0.03
23 17 0.44
24 19 0.49
25 2 0.05
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.33
Consensus pattern (23 bp):
TCCCGTTATAGCTCTTCGAAGCT
Found at i:26097149 original size:24 final size:24
Alignment explanation
Indices: 26097122--26097265 Score: 114
Period size: 24 Copynumber: 6.0 Consensus size: 24
26097112 AGCTCCCGTT
*
26097122 ATATGGCTCTTTGTGAGCTTCCCG
1 ATATGGCTCTTTATGAGCTTCCCG
* * *
26097146 ATATGGTTCTTTATGAACTTCCTG
1 ATATGGCTCTTTATGAGCTTCCCG
**
26097170 ATTATGGCTC-TTATGAGCTTCCTATT
1 A-TATGGCTCTTTATGAGCTTCC--CG
* *** *
26097196 ATATAGC-CCAGATAAGCTTCCCG
1 ATATGGCTCTTTATGAGCTTCCCG
**
26097219 ATA-GGCTCTTTGCGAGCTTCCCG
1 ATATGGCTCTTTATGAGCTTCCCG
*
26097242 ATATGGCTCTTTATAAGCTTCCCG
1 ATATGGCTCTTTATGAGCTTCCCG
26097266 TGATAAGGCT
Statistics
Matches: 91, Mismatches: 23, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
22 2 0.02
23 16 0.18
24 50 0.55
25 21 0.23
26 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (24 bp):
ATATGGCTCTTTATGAGCTTCCCG
Found at i:26099010 original size:30 final size:30
Alignment explanation
Indices: 26098955--26099114 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
26098945 ATAGTGAATC
26098955 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26098984 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26099014 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26099043 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
26099071 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26099101 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26099115 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26099047 original size:59 final size:57
Alignment explanation
Indices: 26098955--26099114 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
26098945 ATAGTGAATC
*
26098955 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
26099014 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
26099071 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
26099115 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:26106926 original size:30 final size:30
Alignment explanation
Indices: 26106871--26107030 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
26106861 ATAGTGAATC
26106871 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26106900 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26106930 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26106959 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
26106987 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26107017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26107031 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26106963 original size:59 final size:57
Alignment explanation
Indices: 26106871--26107030 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
26106861 ATAGTGAATC
*
26106871 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
26106930 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
26106987 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
26107031 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:26110206 original size:44 final size:44
Alignment explanation
Indices: 26110143--26110237 Score: 165
Period size: 44 Copynumber: 2.2 Consensus size: 44
26110133 GAGTGAGTAA
26110143 TTGTAACTATTGGGCATATTTGTT-AGAGTTAAAATTGCTTGTTG
1 TTGTAACTATTGGGCATATTTGTTGAG-GTTAAAATTGCTTGTTG
*
26110187 TTGTAACTATTGGGCATATTTGTTGAGGTTACAATTGCTTGTTG
1 TTGTAACTATTGGGCATATTTGTTGAGGTTAAAATTGCTTGTTG
26110231 TTGTAAC
1 TTGTAAC
26110238 GGTAAATTGG
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 47 0.96
45 2 0.04
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.45
Consensus pattern (44 bp):
TTGTAACTATTGGGCATATTTGTTGAGGTTAAAATTGCTTGTTG
Found at i:26110825 original size:138 final size:138
Alignment explanation
Indices: 26110577--26110854 Score: 529
Period size: 138 Copynumber: 2.0 Consensus size: 138
26110567 TTCTGGTGGT
*
26110577 TAGGGTTTGTTTCTTTGGGATTGGGTTGGGCCTTGATTGCCCAAGTATTCATTGTTTGAATTTTT
1 TAGGGTTTGTTTCTTTGGGATTGAGTTGGGCCTTGATTGCCCAAGTATTCATTGTTTGAATTTTT
*
26110642 TTGGACTTTTGAGCCTCCTTATTCAGTGGCTAAAAAAATTGCAAATTAGTCCACTTCAATTTCTT
66 TGGGACTTTTGAGCCTCCTTATTCAGTGGCTAAAAAAATTGCAAATTAGTCCACTTCAATTTCTT
26110707 GAATTTTA
131 GAATTTTA
*
26110715 TAGGGTTTGTTTCTTTGGGATTGAGTTGGGCCTTGATTGCTCAAGTATTCATTGTTTGAATTTTT
1 TAGGGTTTGTTTCTTTGGGATTGAGTTGGGCCTTGATTGCCCAAGTATTCATTGTTTGAATTTTT
26110780 TGGGACTTTTGAGCCTCCTTATTCAGTGGCTAAAAAAATTGCAAATTAGTCCACTTCAATTTCTT
66 TGGGACTTTTGAGCCTCCTTATTCAGTGGCTAAAAAAATTGCAAATTAGTCCACTTCAATTTCTT
26110845 GAATTTTA
131 GAATTTTA
26110853 TA
1 TA
26110855 ATCATATTTG
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (138 bp):
TAGGGTTTGTTTCTTTGGGATTGAGTTGGGCCTTGATTGCCCAAGTATTCATTGTTTGAATTTTT
TGGGACTTTTGAGCCTCCTTATTCAGTGGCTAAAAAAATTGCAAATTAGTCCACTTCAATTTCTT
GAATTTTA
Found at i:26113804 original size:16 final size:17
Alignment explanation
Indices: 26113776--26113812 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
26113766 GGATAAGAAC
*
26113776 TTATAATAAAATTAATG
1 TTATAATAAAATTAATA
26113793 TTATAA-AAAATTAATA
1 TTATAATAAAATTAATA
26113809 TTAT
1 TTAT
26113813 TTTTTAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TTATAATAAAATTAATA
Found at i:26114211 original size:9 final size:9
Alignment explanation
Indices: 26114199--26114271 Score: 51
Period size: 9 Copynumber: 8.2 Consensus size: 9
26114189 TTATTTTTTT
26114199 AATTTTAAA
1 AATTTTAAA
26114208 AA-TTTAAA
1 AATTTTAAA
* *
26114216 ATATATAAAA
1 A-ATTTTAAA
26114226 AATTTTAAA
1 AATTTTAAA
*
26114235 AA-TTAAAA
1 AATTTTAAA
**
26114243 AACATTAAA
1 AATTTTAAA
* *
26114252 AAGTATAAA
1 AATTTTAAA
*
26114261 AATTATAAA
1 AATTTTAAA
26114270 AA
1 AA
26114272 AATATTTTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
8 14 0.28
9 31 0.62
10 5 0.10
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (9 bp):
AATTTTAAA
Found at i:26114226 original size:18 final size:18
Alignment explanation
Indices: 26114205--26114262 Score: 66
Period size: 17 Copynumber: 3.2 Consensus size: 18
26114195 TTTTAATTTT
26114205 AAAAA-TTTAAAATATATA
1 AAAAACTTTAAAA-ATATA
*
26114223 AAAAATTTTAAAAAT-TA
1 AAAAACTTTAAAAATATA
*
26114240 AAAAACATTAAAAAGTATA
1 AAAAACTTTAAAAA-TATA
26114259 AAAA
1 AAAA
26114263 TTATAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 14 0.40
18 8 0.23
19 13 0.37
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAAACTTTAAAAATATA
Found at i:26114232 original size:19 final size:17
Alignment explanation
Indices: 26114205--26114271 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 17
26114195 TTTTAATTTT
26114205 AAAAATTTAAAATATATA
1 AAAAATTTAAAA-ATATA
26114223 AAAAATTTTAAAAAT-TA
1 AAAAA-TTTAAAAATATA
*
26114240 AAAAACATTAAAAAGTAT-
1 AAAAA-TTTAAAAA-TATA
26114258 AAAAATTATAAAAA
1 AAAAATT-TAAAAA
26114272 AATATTTTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 15 0.36
18 19 0.45
19 8 0.19
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (17 bp):
AAAAATTTAAAAATATA
Found at i:26114233 original size:27 final size:27
Alignment explanation
Indices: 26114199--26114272 Score: 87
Period size: 26 Copynumber: 2.7 Consensus size: 27
26114189 TTATTTTTTT
* *
26114199 AATTTTAAAAATTTAAAATATATAAAA
1 AATTTTAAAAATTTAAAAAACATAAAA
*
26114226 AATTTTAAAAA-TTAAAAAACATTAAA
1 AATTTTAAAAATTTAAAAAACATAAAA
* *
26114252 AAGTATAAAAATTATAAAAAA
1 AATTTTAAAAATT-TAAAAAA
26114273 ATATTTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 21 0.52
27 12 0.30
28 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (27 bp):
AATTTTAAAAATTTAAAAAACATAAAA
Found at i:26115179 original size:23 final size:22
Alignment explanation
Indices: 26115132--26115175 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26115122 TTTCAACATG
* *
26115132 AAAAAATGGGTTTGATTTTTAT
1 AAAAAATGGGTTTGAATTTGAT
26115154 AAAAAATGGGTTTGAATTTGAT
1 AAAAAATGGGTTTGAATTTGAT
26115176 TAAATCCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (22 bp):
AAAAAATGGGTTTGAATTTGAT
Found at i:26116276 original size:19 final size:19
Alignment explanation
Indices: 26116230--26116269 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26116220 TCCATAAGAT
26116230 ATAAATTTTGAATTTTAAA
1 ATAAATTTTGAATTTTAAA
26116249 ATAAATTTTGAATTTTAAA
1 ATAAATTTTGAATTTTAAA
26116268 AT
1 AT
26116270 TCATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
ATAAATTTTGAATTTTAAA
Found at i:26116311 original size:3 final size:3
Alignment explanation
Indices: 26116303--26116360 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
26116293 AATCCAATGT
26116303 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26116351 TAA TAA TAA T
1 TAA TAA TAA T
26116361 TTTTTTCTCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26124465 original size:25 final size:26
Alignment explanation
Indices: 26124435--26124528 Score: 95
Period size: 25 Copynumber: 3.7 Consensus size: 26
26124425 CGGATACACC
* *
26124435 ACAGCTTGTATGAGCTTTCCGAT-TT
1 ACAGCTTGCATGAGCTTCCCGATATT
*
26124460 ACAGCTTACATGAGCTTCCCGATATT
1 ACAGCTTGCATGAGCTTCCCGATATT
** * *
26124486 -CAGCTTGCATGAATTTCCTGTTATT
1 ACAGCTTGCATGAGCTTCCCGATATT
*
26124511 -CAGCTCGCATGAGCTTCC
1 ACAGCTTGCATGAGCTTCC
26124529 TGTTATTCAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 55 0.96
26 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (26 bp):
ACAGCTTGCATGAGCTTCCCGATATT
Found at i:26124529 original size:25 final size:25
Alignment explanation
Indices: 26124468--26124573 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 25
26124458 TTACAGCTTA
* * *
26124468 CATGAGCTTCCCGATATTCAGCTTG
1 CATGAGCTTCCTGTTATTCAGCTCG
**
26124493 CATGAATTTCCTGTTATTCAGCTCG
1 CATGAGCTTCCTGTTATTCAGCTCG
* *
26124518 CATGAGCTTCCTGTTATTCAACTTG
1 CATGAGCTTCCTGTTATTCAGCTCG
* * * *
26124543 GAAGAGCTTACTGTT-TACAGCTCG
1 CATGAGCTTCCTGTTATTCAGCTCG
*
26124567 TATGAGC
1 CATGAGC
26124574 ATACATGAAT
Statistics
Matches: 64, Mismatches: 17, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 11 0.17
25 53 0.83
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (25 bp):
CATGAGCTTCCTGTTATTCAGCTCG
Found at i:26127223 original size:5 final size:5
Alignment explanation
Indices: 26127213--26127251 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
26127203 GCCTAAGATG
* *
26127213 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
26127252 GTAAATTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:26127715 original size:25 final size:25
Alignment explanation
Indices: 26127681--26127753 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 25
26127671 CAACTTTTAT
*
26127681 GAGCGTCTCGATATATGGCTCTTCA
1 GAGCTTCTCGATATATGGCTCTTCA
* *
26127706 GAGCTTCTCGATTAAAT-GCTCTTTGA
1 GAGCTTCTCGA-TATATGGCTC-TTCA
*
26127732 GAGCTTCTTGAT-TAATGGCTCT
1 GAGCTTCTCGATAT-ATGGCTCT
26127754 CTGGAGCTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
25 18 0.46
26 21 0.54
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (25 bp):
GAGCTTCTCGATATATGGCTCTTCA
Found at i:26127744 original size:26 final size:26
Alignment explanation
Indices: 26127681--26127762 Score: 82
Period size: 25 Copynumber: 3.2 Consensus size: 26
26127671 CAACTTTTAT
* *
26127681 GAGCGTCTCGA-TATATGGCTCT-TCA
1 GAGCTTCTCGATTA-ATGGCTCTCTGA
*
26127706 GAGCTTCTCGATTAAAT-GCTCTTTGA
1 GAGCTTCTCGATT-AATGGCTCTCTGA
*
26127732 GAGCTTCTTGATTAATGGCTCTCTG-
1 GAGCTTCTCGATTAATGGCTCTCTGA
26127757 GAGCTT
1 GAGCTT
26127763 GCTAATGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 24 0.49
26 24 0.49
27 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (26 bp):
GAGCTTCTCGATTAATGGCTCTCTGA
Found at i:26127760 original size:25 final size:26
Alignment explanation
Indices: 26127705--26127762 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
26127695 ATGGCTCTTC
*
26127705 AGAGCTTCTCGATTAAATGCTCTTTG
1 AGAGCTTCTCGATTAAATGCTCTCTG
*
26127731 AGAGCTTCTTGATT-AATGGCTCTCTG
1 AGAGCTTCTCGATTAAAT-GCTCTCTG
26127757 -GAGCTT
1 AGAGCTT
26127763 GCTAATGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (26 bp):
AGAGCTTCTCGATTAAATGCTCTCTG
Found at i:26127824 original size:24 final size:24
Alignment explanation
Indices: 26127791--26127859 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
26127781 GGATCTTCCC
26127791 AATTAATGGCTCTC-TGGAGCTACCT
1 AATT-ATGGCTCTCAT-GAGCTACCT
* *
26127816 -ATTATTGGCTCGCATGAGCTTCCT
1 AATTA-TGGCTCTCATGAGCTACCT
*
26127840 AATTATGGCTCTTATGAGCT
1 AATTATGGCTCTCATGAGCT
26127860 TCCCGTTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.03
24 31 0.84
25 5 0.14
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (24 bp):
AATTATGGCTCTCATGAGCTACCT
Found at i:26127860 original size:24 final size:24
Alignment explanation
Indices: 26127723--26127862 Score: 79
Period size: 25 Copynumber: 5.7 Consensus size: 24
26127713 TCGATTAAAT
* * *
26127723 GCTCTTTGAGAGCTTCTTGATTAATG
1 GCTCTTAG-GAGCTTCCTAATT-ATG
*
26127749 GCTCTCT-GGAGCTTGCTAATGTATG
1 GCTCT-TAGGAGCTTCCTAAT-TATG
* * * *
26127774 GCTATTCGGATCTTCCCAATTAATG
1 GCTCTTAGGAGCTTCCTAATT-ATG
*
26127799 GCTCTCT-GGAGCTACCT-ATTATTG
1 GCTCT-TAGGAGCTTCCTAATTA-TG
** *
26127823 GCTCGCATGAGCTTCCTAATTATG
1 GCTCTTAGGAGCTTCCTAATTATG
*
26127847 GCTCTTATGAGCTTCC
1 GCTCTTAGGAGCTTCC
26127863 CGTTATATGG
Statistics
Matches: 89, Mismatches: 17, Indels: 18
0.72 0.14 0.15
Matches are distributed among these distances:
23 1 0.01
24 35 0.39
25 44 0.49
26 8 0.09
27 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (24 bp):
GCTCTTAGGAGCTTCCTAATTATG
Found at i:26129266 original size:20 final size:20
Alignment explanation
Indices: 26129228--26129266 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26129218 AAACTTTATC
* *
26129228 TATTTTGGTTTTATTTGAAG
1 TATTTTGGTTCTATATGAAG
26129248 TATTTTGGTTCTATATGAA
1 TATTTTGGTTCTATATGAA
26129267 ATGAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.18, T:0.56
Consensus pattern (20 bp):
TATTTTGGTTCTATATGAAG
Found at i:26132988 original size:16 final size:15
Alignment explanation
Indices: 26132939--26132989 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
26132929 AAATTACAAT
26132939 AATATTTAATAA-CA
1 AATATTTAATAATCA
26132953 AGA-ATTTAATAATCA
1 A-ATATTTAATAATCA
*
26132968 AATATTTAATTATCTA
1 AATATTTAATAATC-A
26132984 AATATT
1 AATATT
26132990 ATGCATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.34
15 14 0.44
16 7 0.22
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (15 bp):
AATATTTAATAATCA
Found at i:26133391 original size:22 final size:22
Alignment explanation
Indices: 26133366--26133409 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26133356 TAGTCATATA
26133366 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
26133388 ATAAATTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
26133410 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:26133409 original size:16 final size:16
Alignment explanation
Indices: 26133388--26133438 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
26133378 TATAATAAAT
26133388 ATAAATTATTATTTTA
1 ATAAATTATTATTTTA
*
26133404 ATAAATTATTTAATATT-
1 ATAAATTA-TT-ATTTTA
26133421 -TAAATT-TTATTTTA
1 ATAAATTATTATTTTA
26133435 ATAA
1 ATAA
26133439 TAAATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 4 0.14
14 2 0.07
15 3 0.10
16 14 0.48
17 2 0.07
18 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATAAATTATTATTTTA
Found at i:26133445 original size:13 final size:14
Alignment explanation
Indices: 26133429--26133470 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
26133419 TTTAAATTTT
26133429 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
26133442 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
26133457 ATTTTAAATAATAT
1 ATTTT-AATAATAT
26133471 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:26133455 original size:16 final size:16
Alignment explanation
Indices: 26133433--26133469 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
26133423 AATTTTATTT
26133433 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
26133450 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
26133465 TAATA
1 TAATA
26133470 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:26134164 original size:31 final size:31
Alignment explanation
Indices: 26134126--26134184 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
26134116 TTTTACCAAT
26134126 AATCAATCAACAAAGCAGAAAAAAATACAAA
1 AATCAATCAACAAAGCAGAAAAAAATACAAA
* *
26134157 AATCAATCAACAAAGGAGAAAAACATAC
1 AATCAATCAACAAAGCAGAAAAAAATAC
26134185 CACGTAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.64, C:0.17, G:0.08, T:0.10
Consensus pattern (31 bp):
AATCAATCAACAAAGCAGAAAAAAATACAAA
Found at i:26134812 original size:37 final size:40
Alignment explanation
Indices: 26134761--26134853 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 40
26134751 CATTTGGACA
* *
26134761 AAAAACCCCGCTATAGATTG-GACATTAGCAGCG-TTT-T-
1 AAAAACGCCGCTATAGATTGAG-CATTAACAGCGCTTTCTC
* *
26134798 TAAAACGCCGCTATAGATTGAGCATTAACGGCGCTTTCTC
1 AAAAACGCCGCTATAGATTGAGCATTAACAGCGCTTTCTC
26134838 AAAAACGCCGCTATAG
1 AAAAACGCCGCTATAG
26134854 GTCGACCATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
37 27 0.57
38 4 0.09
39 1 0.02
40 15 0.32
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATTGAGCATTAACAGCGCTTTCTC
Found at i:26135074 original size:152 final size:153
Alignment explanation
Indices: 26134799--26135200 Score: 472
Period size: 152 Copynumber: 2.6 Consensus size: 153
26134789 CAGCGTTTTT
* * *
26134799 AAAACGCCGCTATAGATTGAGCATTAACGGCGCTTTCTCAAAAACGCCGCTATAGGTCGACCATT
1 AAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTT-TTAAAAACGCCGCTATAGGTCGACCATT
* * * * *
26134864 AGT-GGTG-TTTATCAAAAAAAGCCGCAAAAAATTTAAGCACAACGACGTCGTTTTATGTTGAGC
65 A-TCGGCGCTTT-T-AGAAAACGCCACAAAAAATTTAAGCACAACGACCTCGTTTTATGTTGAGC
26134927 TTTAGTGTCATTAGCGACGCTTTCTCA
127 TTTAGTGTCATTAGCGACGCTTTCTCA
* *
26134954 AAAACGCCGCTATAGATCGAGCATTAGCGGC-ATTTTTAAAAACGCCGCTATAGGTCAACCATTA
1 AAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTCGACCATTA
* * *
26135018 TCGGCGCTTCTTGGAAAACGCCACAAAAAA-TTAAGCACAAC-ACCCTCGTTTTATGTTGGGTTT
66 TCGGCGCTT-TTAGAAAACGCCACAAAAAATTTAAGCACAACGA-CCTCGTTTTATGTTGAGCTT
* * * *
26135081 TAGTGTTATTAGCGGCGCTTTTTGA
129 TAGTGTCATTAGCGACGCTTTCTCA
* * * * * * *
26135106 AAAACACCGCTACAAATCGAGCATTAGCGGCTCTTTTTGGAAAATGCCGCTATAGGTCGACCTTT
1 AAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTT-AAAAACGCCGCTATAGGTCGACCATT
*
26135171 AGCGGCGCTTTCTAGAAAACGCCACAAAAA
65 ATCGGCGCTTT-TAGAAAACGCCACAAAAA
26135201 TTCAGTGTCA
Statistics
Matches: 213, Mismatches: 27, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
151 1 0.00
152 78 0.37
153 50 0.23
154 54 0.25
155 30 0.14
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (153 bp):
AAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTCGACCATTA
TCGGCGCTTTTAGAAAACGCCACAAAAAATTTAAGCACAACGACCTCGTTTTATGTTGAGCTTTA
GTGTCATTAGCGACGCTTTCTCA
Found at i:26135551 original size:14 final size:14
Alignment explanation
Indices: 26135529--26135573 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
26135519 TTAATTATCA
*
26135529 TTATAGTTTAGAGT
1 TTATGGTTTAGAGT
26135543 TTATGGTTTA-AGGT
1 TTATGGTTTAGA-GT
*
26135557 ATATGGTTTAGAGT
1 TTATGGTTTAGAGT
26135571 TTA
1 TTA
26135574 AAGTTTATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGAGT
Found at i:26136149 original size:15 final size:14
Alignment explanation
Indices: 26136114--26136150 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26136104 GTTTATATGA
26136114 TAGGGTTTTGAGTT
1 TAGGGTTTTGAGTT
*
26136128 TAAGGTTTTGAGATT
1 TAGGGTTTTGAG-TT
26136143 TAGGGTTT
1 TAGGGTTT
26136151 ATAGTTCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (14 bp):
TAGGGTTTTGAGTT
Found at i:26139185 original size:13 final size:14
Alignment explanation
Indices: 26139169--26139200 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
26139159 TTATTATAAA
26139169 TAATTATAAT-GTT
1 TAATTATAATGGTT
26139182 TAATTATAATGGTT
1 TAATTATAATGGTT
26139196 TAATT
1 TAATT
26139201 CGTCGTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (14 bp):
TAATTATAATGGTT
Found at i:26139656 original size:21 final size:21
Alignment explanation
Indices: 26139614--26139663 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
26139604 AGACGGATGA
**
26139614 AGCAGCGAGGGAGGCAGCGGC
1 AGCAGCGAGGGAGGCAAAGGC
*
26139635 AGCAGCGAGGGAGGTAAAGGC
1 AGCAGCGAGGGAGGCAAAGGC
*
26139656 AGTAGCGA
1 AGCAGCGA
26139664 TGGCAGCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.48, T:0.04
Consensus pattern (21 bp):
AGCAGCGAGGGAGGCAAAGGC
Found at i:26140173 original size:43 final size:43
Alignment explanation
Indices: 26140036--26140195 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
26140026 ACAAAAGTGT
** *
26140036 CGCTAAATTCCATGACTTTTAGTAGCGCTTTTCCCACAAACGC
1 CGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAACGC
** * *
26140079 CGCTAAAAATCGTGACTTTTAATGGCGCTTTTCCCACAAACGC
1 CGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAACGC
* * * * *
26140122 TGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCACAGACAC
1 CGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAACGC
* *
26140165 CGCTAAAAGTCATAATCTTTT-GTGGC-CTTTT
1 CGCTAAAAGCCATGA-CTTTTAGTGGCGCTTTT
26140196 TTTCAAATAA
Statistics
Matches: 97, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 5 0.05
43 87 0.90
44 5 0.05
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (43 bp):
CGCTAAAAGCCATGACTTTTAGTGGCGCTTTTCCCACAAACGC
Found at i:26144337 original size:13 final size:13
Alignment explanation
Indices: 26144321--26144345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26144311 TATTTTACTC
26144321 AAAAATTTAAATA
1 AAAAATTTAAATA
26144334 AAAAATTTAAAT
1 AAAAATTTAAAT
26144346 CAATTACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAAATTTAAATA
Found at i:26145231 original size:21 final size:21
Alignment explanation
Indices: 26145205--26145263 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
26145195 AATAGCGGTG
**
26145205 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGAAACTGTA
26145226 GCGGTGAGATTAGAAACTGTA
1 GCGGTGAGATTAGAAACTGTA
**
26145247 GTAGTGAGATTAGAAAC
1 GCGGTGAGATTAGAAAC
26145264 AATGGTGGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.27
Consensus pattern (21 bp):
GCGGTGAGATTAGAAACTGTA
Found at i:26147001 original size:15 final size:15
Alignment explanation
Indices: 26146977--26147007 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26146967 GCACTAAATT
26146977 ATATTATATATATAA
1 ATATTATATATATAA
*
26146992 ATATTTTATATATAA
1 ATATTATATATATAA
26147007 A
1 A
26147008 AAATAAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATTATATATATAA
Found at i:26147233 original size:34 final size:34
Alignment explanation
Indices: 26147195--26147262 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
26147185 ACATCACATG
*
26147195 AGTAAGAAAACTAATAAGTATATAAATGAGATTT
1 AGTAAGAAAACTAATAAATATATAAATGAGATTT
*
26147229 AGTAAGAAAACTAGTAAATATATAAATGAGATTT
1 AGTAAGAAAACTAATAAATATATAAATGAGATTT
26147263 TTAAAAAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.29
Consensus pattern (34 bp):
AGTAAGAAAACTAATAAATATATAAATGAGATTT
Found at i:26151567 original size:20 final size:21
Alignment explanation
Indices: 26151533--26151586 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
26151523 TGATGATATT
*
26151533 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATAAGATA
26151554 -TATATTATTTTAATAAGATA
1 TTATATTATTTTAATAAGATA
*
26151574 TTTTATTATTTTA
1 TTATATTATTTTA
26151587 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATAAGATA
Found at i:26151590 original size:3 final size:3
Alignment explanation
Indices: 26151572--26151620 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
26151562 TTTAATAAGA
*
26151572 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
26151617 TAT T
1 TAT T
26151621 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:26151592 original size:11 final size:11
Alignment explanation
Indices: 26151576--26151614 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
26151566 ATAAGATATT
26151576 TTATTATTTTA
1 TTATTATTTTA
*
26151587 TTATTATTTCA
1 TTATTATTTTA
26151598 TTATTATTTTA
1 TTATTATTTTA
26151609 TTATTA
1 TTATTA
26151615 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:26151600 original size:19 final size:19
Alignment explanation
Indices: 26151572--26151613 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
26151562 TTTAATAAGA
*
26151572 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
26151591 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
26151610 TATT
1 TATT
26151614 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:26153797 original size:46 final size:46
Alignment explanation
Indices: 26153745--26154018 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
26153735 AGTGTGCTCT
* * *
26153745 CTGATATGAAATGTGTAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
26153791 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
26153837 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
26153883 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
26153929 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
26153975 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
26154019 TCATGTCAAA
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 205 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26159399 original size:40 final size:40
Alignment explanation
Indices: 26159354--26159520 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26159344 CGGAATATAA
26159354 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26159394 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
26159434 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26159474 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26159513 CCGGATAT
1 CCGGATAT
26159521 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26159504 original size:80 final size:79
Alignment explanation
Indices: 26159354--26159520 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
26159344 CGGAATATAA
* *
26159354 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
26159419 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
26159434 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
26159496 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
26159513 CCGGATAT
1 CCGGATAT
26159521 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:26160368 original size:17 final size:19
Alignment explanation
Indices: 26160345--26160390 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
26160335 AAGAAGCATG
26160345 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
26160363 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
26160381 AATCATGCTC
1 AATCATGCTC
26160391 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:26176514 original size:210 final size:210
Alignment explanation
Indices: 26176202--26177005 Score: 1083
Period size: 210 Copynumber: 3.8 Consensus size: 210
26176192 TAAGCCGCAG
* *
26176202 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCGAAGATGACAGATCTTATCTCTC
1 CATAGCAGATTTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
26176267 TGTATTCAGCGGGGAGCAGATC-AATGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 TGTATTCAGCGGGGAGCAGATCGAA-GATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
* * *
26176331 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATTTCCACTT
130 AAATCTAAGATAATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
*
26176396 TGATGGAAGGCAGACA
195 TGATAGAAGGCAGACA
*
26176412 CATAGCAGATCTT-ACCTTCAGATGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCT
1 CATAGCAGAT-TTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCT
* * * *
26176476 CTGTATTCAGCGGGGAGTAGATCGAAGAAATAGCTGATTTGGCTTTCATGTGCTTACGATGAAGC
65 CTGTATTCAGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
* *
26176541 AAATCTAAGATAATTTATCCTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
130 AAATCTAAGATAATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
* *
26176606 TGATTGAAGGTAGACA
195 TGATAGAAGGCAGACA
*
26176622 CATAGCAGATTTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATTTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
26176687 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
66 TGTATTCAGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* * * * * *
26176752 AATCTAAGATGATTTGTCATCTCAGTATTGTCAGAGAACAAATCGAAGTCTGACATCTCTACTTC
131 AATCTAAGATAATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
* *
26176817 AATAG-AGAGCAGATA
196 GATAGAAG-GCAGACA
* * * * **
26176832 CATAGCAGATTTGACCTTCAGACGATTA-GACTGAAACAAGATCCAAGAT----GAT-TTGGCAT
1 CATAGCAGATTTCACCTTCAGATGTTTACG-CTGAAGC-AGATCCAAGATGACAGATCTTATC-T
* ** * * * * *
26176891 C-CT-TATGCTTA-CAAGGAGCAAATCGAAGACATAGCTAATTTAGTTTTCACGTGTTTACGATG
63 CTCTGTAT--TCAGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATG
*
26176953 AAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
126 AAGCAAATCTAAGATAATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
26177006 AAGCAGATTT
Statistics
Matches: 533, Mismatches: 52, Indels: 22
0.88 0.09 0.04
Matches are distributed among these distances:
205 3 0.01
206 98 0.18
207 6 0.01
209 5 0.01
210 407 0.76
211 14 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (210 bp):
CATAGCAGATTTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCAGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
AATCTAAGATAATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
GATAGAAGGCAGACA
Found at i:26179016 original size:17 final size:19
Alignment explanation
Indices: 26179001--26179038 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
26178991 TTTTTTATTA
26179001 ATTATTTGTACATATTATAT
1 ATTATTTGTACATA-TATAT
26179021 ATTATTTGTACATATATA
1 ATTATTTGTACATATATA
26179039 CACTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTATTTGTACATATATAT
Found at i:26181750 original size:36 final size:37
Alignment explanation
Indices: 26181682--26181752 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
26181672 AAAATTTGTT
*
26181682 GAGAAACATTTGTTTTAATATTTTTAATGTATTTTTA
1 GAGAAACATTTGTTTTAATAGTTTTAATGTATTTTTA
* * *
26181719 GAGAAATATTTGTTTTGAT-GTTTTACTGTATTTT
1 GAGAAACATTTGTTTTAATAGTTTTAATGTATTTT
26181753 ATATATTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 13 0.43
37 17 0.57
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.55
Consensus pattern (37 bp):
GAGAAACATTTGTTTTAATAGTTTTAATGTATTTTTA
Found at i:26184764 original size:41 final size:41
Alignment explanation
Indices: 26184702--26184784 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
26184692 TCTTAATGGT
26184702 AACACGAATAAACAGAGAGGCATCAGACTTTGAAAGAACAA
1 AACACGAATAAACAGAGAGGCATCAGACTTTGAAAGAACAA
* *
26184743 AACATGAATAAATAGAGAGGCATCAGACTTTGAAAGAACAA
1 AACACGAATAAACAGAGAGGCATCAGACTTTGAAAGAACAA
26184784 A
1 A
26184785 CCCTAATGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.52, C:0.14, G:0.19, T:0.14
Consensus pattern (41 bp):
AACACGAATAAACAGAGAGGCATCAGACTTTGAAAGAACAA
Found at i:26190939 original size:40 final size:40
Alignment explanation
Indices: 26190862--26191079 Score: 359
Period size: 40 Copynumber: 5.5 Consensus size: 40
26190852 AAACCAAGTA
* * * *
26190862 CCTTCGGGATTTAG-CCGGACATAGCT-ACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
26190901 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26190941 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26190981 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26191021 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26191061 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26191080 TTATCATTCG
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 155 0.92
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.