Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 96 of 378
Found at i:26203334 original size:29 final size:29
Alignment explanation
Indices: 26203302--26203491 Score: 281
Period size: 29 Copynumber: 6.5 Consensus size: 29
26203292 ATAGTGAATC
26203302 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
26203331 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
26203361 CGCACACTTAGTACTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
26203390 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
26203419 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * * * *
26203448 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
26203478 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26203492 CAATCTTGTC
Statistics
Matches: 150, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
29 102 0.68
30 48 0.32
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:26203441 original size:58 final size:59
Alignment explanation
Indices: 26203302--26203491 Score: 301
Period size: 59 Copynumber: 3.2 Consensus size: 59
26203292 ATAGTGAATC
*
26203302 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
26203361 CGCACACTTAGTACTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATATAATTTTCAGCT
* * * * *
26203419 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATATAATTTTCAGCT
26203478 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26203492 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
58 54 0.45
59 66 0.55
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26203472 original size:88 final size:88
Alignment explanation
Indices: 26203301--26203491 Score: 285
Period size: 88 Copynumber: 2.2 Consensus size: 88
26203291 TATAGTGAAT
26203301 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
* * **
26203366 ACTTAGTACTATATATTTTCAGT
66 ACTTAGTACTATAAATTTTAAAC
* * *
26203389 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
* *
26203453 ACTTAGTGCTGTACAATTTTAAAC
66 ACTTAGTACTATA-AATTTTAAAC
26203477 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
26203492 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 25 0.27
88 67 0.73
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (88 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
ACTTAGTACTATAAATTTTAAAC
Found at i:26211216 original size:29 final size:29
Alignment explanation
Indices: 26211184--26211315 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
26211174 ATAGTGAATC
26211184 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
26211213 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
26211243 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
26211272 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
26211301 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26211316 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:26211325 original size:59 final size:59
Alignment explanation
Indices: 26211184--26211315 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
26211174 ATAGTGAATC
26211184 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
26211243 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
26211301 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26211316 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26216479 original size:11 final size:11
Alignment explanation
Indices: 26216463--26216490 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26216453 GGAAATAATA
26216463 TTTTTTTGAAT
1 TTTTTTTGAAT
26216474 TTTTTTTGAAT
1 TTTTTTTGAAT
26216485 TTTTTT
1 TTTTTT
26216491 CACAAACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTTGAAT
Found at i:26222050 original size:40 final size:40
Alignment explanation
Indices: 26221995--26222210 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
26221985 CGGATGATAA
* * * * *
26221995 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGAGTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
26222035 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26222075 TCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26222115 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26222155 CCGGGCTAAGTCCTGAAGGCATTT-T-AGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26222193 CC-GGCAAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26222211 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
37 15 0.10
38 11 0.07
39 1 0.01
40 128 0.82
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26231094 original size:29 final size:29
Alignment explanation
Indices: 26231061--26231180 Score: 159
Period size: 29 Copynumber: 4.1 Consensus size: 29
26231051 TGACGAGATC
* *
26231061 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * *
26231090 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
26231119 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * * *
26231148 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
26231177 GGCA
1 GGCA
26231181 TTGGGTGTGC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 82 1.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAT
Found at i:26231188 original size:29 final size:29
Alignment explanation
Indices: 26231063--26231195 Score: 86
Period size: 29 Copynumber: 4.6 Consensus size: 29
26231053 ACGAGATCGG
* ** * * *
26231063 CACTAAGTGTGCGTGCTGGAAATATATGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* ** * * *
26231092 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* * *
26231121 CACTAAGTGTGCATGCTGGAAAAATATGA
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* *
26231150 CACTATGTGTGCAAGCTGGAAAAATACGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* * *
26231179 CATTGGGTGTGCGAGCT
1 CACTAGGTGTGCAAGCT
26231196 CGGAGGGTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (29 bp):
CACTAGGTGTGCAAGCTGGAAAAATACGA
Found at i:26233136 original size:40 final size:40
Alignment explanation
Indices: 26233081--26233298 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
26233071 CGGATGATAA
* * * *
26233081 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
26233121 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26233161 CCGAGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26233201 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26233241 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26233281 CC-GGCAAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26233299 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 146 0.90
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26236079 original size:43 final size:42
Alignment explanation
Indices: 26236023--26236197 Score: 140
Period size: 43 Copynumber: 4.1 Consensus size: 42
26236013 ACATAGGATT
*
26236023 TTGATTTGTGATTTCGTGTAAGACCACATCTGGGACATTGGCA
1 TTGATTT-AGATTTCGTGTAAGACCACATCTGGGACATTGGCA
** *
26236066 TTGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TTGATTT-AGATTT-CGTGTAAGACCACATCTGGGACATTGGCA
* * *
26236110 TCAT-ATTTA-ATTTCGTGTAAGACC-CTATTTAGGACAGTGGCA
1 T--TGATTTAGATTTCGTGTAAGACCAC-ATCTGGGACATTGGCA
* * * * ** *
26236152 TCGATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TTGAT-TTAGATTTCGTGTAAGACCACATCTGGGACATTGGCA
26236195 TTG
1 TTG
26236198 TACGAGCTCT
Statistics
Matches: 103, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
41 2 0.02
42 25 0.24
43 43 0.42
44 28 0.27
45 4 0.04
46 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TTGATTTAGATTTCGTGTAAGACCACATCTGGGACATTGGCA
Found at i:26239697 original size:13 final size:13
Alignment explanation
Indices: 26239679--26239705 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26239669 GCTCGGGAAG
26239679 GACACGCCCGTGT
1 GACACGCCCGTGT
26239692 GACACGCCCGTGT
1 GACACGCCCGTGT
26239705 G
1 G
26239706 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:26246444 original size:29 final size:27
Alignment explanation
Indices: 26246410--26246512 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
26246400 TACTCAATCA
*
26246410 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
26246439 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
26246468 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
26246497 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
26246513 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:26254158 original size:42 final size:42
Alignment explanation
Indices: 26254111--26254273 Score: 141
Period size: 42 Copynumber: 3.9 Consensus size: 42
26254101 TTGGCATCAG
* *
26254111 TATGAGTTATCATGTAAGACCATATCTGGGATATGGCGTTGA
1 TATGAGTTATCATGTAAGACCATATCTGGGACATGGCGTCGA
* **
26254153 TATGAGATT-TCGTGTAAGACCACGTCTGGGACATGGCGTCGA
1 TATGAG-TTATCATGTAAGACCATATCTGGGACATGGCGTCGA
* * * * * * *
26254195 AATGAG-AATTCGTATAAGACCATATCTGGGATATGACATCGA
1 TATGAGTTA-TCATGTAAGACCATATCTGGGACATGGCGTCGA
* * ** *
26254237 TGTGAGATCCCATGTAAGACCATGTCTGGGACATGGC
1 TATGAGTTATCATGTAAGACCATATCTGGGACATGGC
26254274 ATTGGCATCT
Statistics
Matches: 94, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
42 92 0.98
43 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (42 bp):
TATGAGTTATCATGTAAGACCATATCTGGGACATGGCGTCGA
Found at i:26256223 original size:6 final size:6
Alignment explanation
Indices: 26256212--26256278 Score: 111
Period size: 6 Copynumber: 11.5 Consensus size: 6
26256202 GAAGTATAAG
*
26256212 AAAATA AAAATA AACATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
26256260 AAAAT- AAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAA
26256279 TGAATGGACT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
5 10 0.17
6 48 0.83
ACGTcount: A:0.82, C:0.01, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:26258599 original size:29 final size:29
Alignment explanation
Indices: 26258566--26258725 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
26258556 GTGACGAGAT
26258566 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26258595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
26258624 TGGCACTAAGTGTGCATGCTGGAAATTTA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
26258653 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
26258682 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
26258711 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
26258726 GAAATCGAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:26266649 original size:29 final size:29
Alignment explanation
Indices: 26266616--26266774 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
26266606 GTGACGAGAT
26266616 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26266645 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26266674 TGGCACTAAGTGTGCATGCTGGAAAT-TA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
26266702 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
26266731 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
26266760 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
26266775 GAAATCGAGT
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
28 22 0.20
29 88 0.80
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:26266686 original size:58 final size:58
Alignment explanation
Indices: 26266612--26266776 Score: 176
Period size: 57 Copynumber: 2.9 Consensus size: 58
26266602 TACGGTGACG
*
26266612 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
* * **
26266669 ATATATGGCACTAAGTGTGCATGCTGGAAAT-TACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* * * ** * *
26266726 GGGTATGGCACTATGTGTGCGGGCT-TAAATCACATGGCACTAAGTGTGCGA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
26266777 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
56 4 0.05
57 42 0.48
58 42 0.48
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:26269242 original size:18 final size:18
Alignment explanation
Indices: 26269221--26269257 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26269211 GCTAAAATTG
26269221 AAATAAA-ATAACAAATAA
1 AAATAAATA-AACAAATAA
26269239 AAATAAATAAACAAATAA
1 AAATAAATAAACAAATAA
26269257 A
1 A
26269258 TAAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (18 bp):
AAATAAATAAACAAATAA
Found at i:26271471 original size:63 final size:58
Alignment explanation
Indices: 26271368--26271490 Score: 192
Period size: 63 Copynumber: 2.0 Consensus size: 58
26271358 TTGACTCTAC
*
26271368 GATTTTCTTTAGGATACGTTCGAGCTCTCGTTTGCAACTTCAACTTGTCCACTAGTTT
1 GATTTTCTTTAAGATACGTTCGAGCTCTCGTTTGCAACTTCAACTTGTCCACTAGTTT
26271426 GATTTTCTTGATAAGATACGTTCGAGTCATCTCGGTTTGCAACTTCAACTTGTCCACTAGTTT
1 GATTTTCTT--TAAGATACGTTCGAG-C-TCTC-GTTTGCAACTTCAACTTGTCCACTAGTTT
26271489 GA
1 GA
26271491 GGGTGATAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
58 9 0.15
60 14 0.24
61 1 0.02
62 4 0.07
63 31 0.53
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (58 bp):
GATTTTCTTTAAGATACGTTCGAGCTCTCGTTTGCAACTTCAACTTGTCCACTAGTTT
Found at i:26278821 original size:31 final size:31
Alignment explanation
Indices: 26278780--26278843 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
26278770 CCTTTTCATA
* *
26278780 TTTCATATTTCATAACATTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
26278811 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
26278842 TT
1 TT
26278844 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:26279089 original size:24 final size:24
Alignment explanation
Indices: 26279037--26279131 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
26279027 GCTTTATCAT
*
26279037 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
26279062 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
26279086 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
26279109 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26279132 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.35
24 29 0.46
25 12 0.19
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:26279116 original size:23 final size:23
Alignment explanation
Indices: 26279058--26279130 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
26279048 CCTAGCCTCT
*
26279058 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
26279081 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
26279105 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
26279128 TTT
1 TTT
26279131 TTCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:26279204 original size:9 final size:9
Alignment explanation
Indices: 26279190--26279266 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
26279180 ATCTCGTGTG
26279190 CATATCATA
1 CATATCATA
*
26279199 CATATCATGTG
1 CATATCA--TA
26279210 CATATCATA
1 CATATCATA
* *
26279219 CATGTCATGTG
1 CATATCA--TA
26279230 CATATCATA
1 CATATCATA
*
26279239 CATATCATGTG
1 CATATCA--TA
26279250 CATATCATA
1 CATATCATA
26279259 CATATCAT
1 CATATCAT
26279267 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:26279209 original size:20 final size:20
Alignment explanation
Indices: 26279186--26279268 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
26279176 GAACATCTCG
26279186 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
26279206 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
26279226 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
26279246 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
26279266 TGT
1 TGT
26279269 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:26279215 original size:11 final size:11
Alignment explanation
Indices: 26279186--26279257 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
26279176 GAACATCTCG
26279186 TGTGCATATCA
1 TGTGCATATCA
*
26279197 --TACATATCA
1 TGTGCATATCA
26279206 TGTGCATATCA
1 TGTGCATATCA
* *
26279217 --TACATGTCA
1 TGTGCATATCA
26279226 TGTGCATATCA
1 TGTGCATATCA
*
26279237 --TACATATCA
1 TGTGCATATCA
26279246 TGTGCATATCA
1 TGTGCATATCA
26279257 T
1 T
26279258 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:26279351 original size:25 final size:25
Alignment explanation
Indices: 26279305--26279352 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26279295 ATATATAAAC
* * * *
26279305 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26279330 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26279353 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26280606 original size:27 final size:27
Alignment explanation
Indices: 26280586--26281060 Score: 557
Period size: 27 Copynumber: 17.6 Consensus size: 27
26280576 AGGGTATTTT
*
26280586 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26280613 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
26280640 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26280667 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
26280694 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
26280721 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
26280747 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
26280774 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
26280801 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
26280828 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
26280855 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
26280882 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
26280909 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
26280936 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
26280963 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
26280990 AGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26281017 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
26281044 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
26281061 GGAGTACTTT
Statistics
Matches: 395, Mismatches: 42, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
26 25 0.06
27 366 0.93
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:26280672 original size:81 final size:81
Alignment explanation
Indices: 26280587--26281060 Score: 625
Period size: 81 Copynumber: 5.9 Consensus size: 81
26280577 GGGTATTTTA
* * * * *
26280587 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
26280652 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *
26280668 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
26280733 AATCG-GGGTAAAATG
66 AATCGAGGGTAAAATG
* * ** *
26280748 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
*
26280812 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* *
26280829 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
*
26280894 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
* * * *
26280910 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAC
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
**
26280974 AAATCGAGGGTAAAACA
65 AAATCGAGGGTAAAATG
* ** * *
26280991 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTAT
26281055 AAATCG
65 AAATCG
26281061 GGAGTACTTT
Statistics
Matches: 345, Mismatches: 40, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.01
80 72 0.21
81 268 0.78
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:26281105 original size:108 final size:108
Alignment explanation
Indices: 26280602--26281091 Score: 666
Period size: 108 Copynumber: 4.5 Consensus size: 108
26280592 TTTGTAAATC
* * ** * * *
26280602 GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC
* * *
26280667 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAA-T
66 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACT
* * * *
26280709 CGAGGGTAAAACGATAATTATGTAAATCG-GGGTAAAATGGTAATTATGTA-AATTAG-GGGTAA
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TACAAATCGAGGGTAA
* * *
26280771 AACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACT
63 AACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACT
*
26280817 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC
* * *
26280882 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACT
66 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACT
26280925 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC
* *
26280990 AGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAACT
66 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACT
*** *
26281033 GAGGGTAAAACGGTAATTCTGTAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGG-GTAAAATGGTAATTTTACAAATCGAGGG
26281092 CATTTCAGTA
Statistics
Matches: 346, Mismatches: 29, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
106 2 0.01
107 92 0.27
108 250 0.72
109 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (108 bp):
GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAAC
AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACT
Found at i:26283934 original size:31 final size:31
Alignment explanation
Indices: 26283893--26283956 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26283883 CCTTTTCATA
*
26283893 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
26283924 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
26283955 TT
1 TT
26283957 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:26284200 original size:24 final size:24
Alignment explanation
Indices: 26284148--26284313 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
26284138 GCTTTATCAT
*
26284148 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
26284173 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
26284197 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
26284220 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
26284244 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
26284268 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
26284291 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26284314 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:26284224 original size:47 final size:48
Alignment explanation
Indices: 26284147--26284313 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
26284137 TGCTTTATCA
* *
26284147 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
26284196 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
26284243 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
26284290 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
26284314 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:26284248 original size:71 final size:71
Alignment explanation
Indices: 26284148--26284313 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
26284138 GCTTTATCAT
* *
26284148 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
26284212 GCCCTTTA
64 GCCCTTTA
* * *
26284220 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
26284285 CCTTTA
66 CCTTTA
26284291 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26284314 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:26284385 original size:9 final size:9
Alignment explanation
Indices: 26284371--26284447 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
26284361 ATCTCGTGTG
26284371 CATATCATA
1 CATATCATA
*
26284380 CATATCATGTG
1 CATATCA--TA
26284391 CATATCATA
1 CATATCATA
* *
26284400 CATGTCATGTG
1 CATATCA--TA
26284411 CATATCATA
1 CATATCATA
*
26284420 CATATCATGTG
1 CATATCA--TA
26284431 CATATCATA
1 CATATCATA
26284440 CATATCAT
1 CATATCAT
26284448 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:26284390 original size:20 final size:20
Alignment explanation
Indices: 26284367--26284449 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
26284357 GAACATCTCG
26284367 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
26284387 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
26284407 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
26284427 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
26284447 TGT
1 TGT
26284450 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:26284396 original size:11 final size:11
Alignment explanation
Indices: 26284367--26284438 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
26284357 GAACATCTCG
26284367 TGTGCATATCA
1 TGTGCATATCA
*
26284378 --TACATATCA
1 TGTGCATATCA
26284387 TGTGCATATCA
1 TGTGCATATCA
* *
26284398 --TACATGTCA
1 TGTGCATATCA
26284407 TGTGCATATCA
1 TGTGCATATCA
*
26284418 --TACATATCA
1 TGTGCATATCA
26284427 TGTGCATATCA
1 TGTGCATATCA
26284438 T
1 T
26284439 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:26284532 original size:25 final size:25
Alignment explanation
Indices: 26284486--26284533 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26284476 ATATATAAAC
* * * *
26284486 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26284511 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26284534 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26285782 original size:27 final size:27
Alignment explanation
Indices: 26285762--26286237 Score: 543
Period size: 27 Copynumber: 17.7 Consensus size: 27
26285752 AGGGTATTTT
*
26285762 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26285789 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
26285816 A-TAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26285842 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
26285869 GGTAATTCTGCAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
26285896 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
26285923 GGTAATTATGTAAAT-TAGGGGTAAAAT
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
26285950 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
26285977 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
26286004 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
26286031 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
26286058 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
26286085 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
26286112 GGTAATTCTGTAAATCGAGGGT-AAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
26286138 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
26286165 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
26286192 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
26286219 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
26286238 AGTACTTTGG
Statistics
Matches: 397, Mismatches: 40, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
26 49 0.12
27 343 0.86
28 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:26289008 original size:90 final size:90
Alignment explanation
Indices: 26288883--26289061 Score: 270
Period size: 90 Copynumber: 2.0 Consensus size: 90
26288873 AATTTTCGGC
* *
26288883 AATCCAGTTGTCACACCCTAGAATATATATAGTTAAAAAATAAGATTAAACAAGAAATAAGCTAC
1 AATCCAGTTGTCACACCCGAGAATAAATATAGTTAAAAAATAAGATTAAACAAGAAATAAGCTAC
26288948 AGGCTCAATGGTTAAGTGATAGTAG
66 AGGCTCAATGGTTAAGTGATAGTAG
* * * *
26288973 AATCCAGTTGTCACACCTCGA-AATAAATATGGTTAAGAAATAAGATTAAAGAAGAAATGAGCTA
1 AATCCAGTTGTCACACC-CGAGAATAAATATAGTTAAAAAATAAGATTAAACAAGAAATAAGCTA
* *
26289037 TATGCTCAATGGTTAAGTGATAGTA
65 CAGGCTCAATGGTTAAGTGATAGTA
26289062 CATCCATTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 78 0.98
91 2 0.03
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (90 bp):
AATCCAGTTGTCACACCCGAGAATAAATATAGTTAAAAAATAAGATTAAACAAGAAATAAGCTAC
AGGCTCAATGGTTAAGTGATAGTAG
Found at i:26292594 original size:49 final size:49
Alignment explanation
Indices: 26292537--26292643 Score: 196
Period size: 49 Copynumber: 2.2 Consensus size: 49
26292527 ATGTATGAGA
*
26292537 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
26292586 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
*
26292635 TATATATAT
1 TGTATATAT
26292644 ATGTGGCAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
Found at i:26292767 original size:37 final size:36
Alignment explanation
Indices: 26292712--26292798 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
26292702 AACTTGGAAA
26292712 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
26292750 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
26292787 TATGTCCGGGTA
1 TATGTCCGGGTA
26292799 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:26296274 original size:64 final size:63
Alignment explanation
Indices: 26296167--26296295 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 63
26296157 GGGATCGACT
* * *
26296167 TGGATAGCTTTTTTTTATAAAAATATTTAGACTTATTATTTGAAATTTTTAATATTTGGAAAC
1 TGGATAGCTTTTTTTTATAAAAATATTTAGACTTATTAGTTGAAATTTCTAATATTTAGAAAC
* *
26296230 TGGATAGCTTTTTCTTTATAAAAATATTTAGACTTGTTAGTTGAAATTTCTATTATTTAGAAAC
1 TGGATAGCTTTTT-TTTATAAAAATATTTAGACTTATTAGTTGAAATTTCTAATATTTAGAAAC
26296294 TG
1 TG
26296296 TATTGTTCTA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
63 13 0.22
64 47 0.78
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (63 bp):
TGGATAGCTTTTTTTTATAAAAATATTTAGACTTATTAGTTGAAATTTCTAATATTTAGAAAC
Found at i:26297504 original size:16 final size:16
Alignment explanation
Indices: 26297479--26297510 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26297469 TCAAGTGAGA
26297479 TAATTAATTGATGTAT
1 TAATTAATTGATGTAT
*
26297495 TAATTCATTGATGTAT
1 TAATTAATTGATGTAT
26297511 ATATATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.50
Consensus pattern (16 bp):
TAATTAATTGATGTAT
Found at i:26297737 original size:16 final size:16
Alignment explanation
Indices: 26297693--26297740 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
26297683 CATGTTTATC
26297693 TATGCTTTAATAT-TA
1 TATGCTTTAATATATA
*
26297708 -A-GCTTGT-ATGTATA
1 TATGCTT-TAATATATA
26297722 TATGCTTTAATATATA
1 TATGCTTTAATATATA
26297738 TAT
1 TAT
26297741 ATATATATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
13 7 0.27
14 4 0.15
15 2 0.08
16 13 0.50
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.50
Consensus pattern (16 bp):
TATGCTTTAATATATA
Found at i:26303578 original size:29 final size:29
Alignment explanation
Indices: 26303516--26303618 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26303506 GTGACGAGAT
* * *
26303516 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26303545 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26303574 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26303603 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26303619 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26310560 original size:29 final size:29
Alignment explanation
Indices: 26310498--26310600 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26310488 GTGACGAGAT
* * *
26310498 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26310527 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26310556 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26310585 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26310601 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26318540 original size:12 final size:14
Alignment explanation
Indices: 26318519--26318551 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
26318509 TCAGTATCCC
26318519 AATCATATCAGT-A
1 AATCATATCAGTCA
26318532 AATCA-ATCAGTCA
1 AATCATATCAGTCA
26318545 AATCATA
1 AATCATA
26318552 ATTTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 11 0.61
14 1 0.06
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (14 bp):
AATCATATCAGTCA
Found at i:26320112 original size:56 final size:56
Alignment explanation
Indices: 26320028--26320199 Score: 272
Period size: 56 Copynumber: 3.1 Consensus size: 56
26320018 CATGGCATCG
*
26320028 ATATATGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCAAT
1 ATATATGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCGAT
* * *
26320084 ATATGTGTGCAAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGAT
1 ATATATGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCGAT
* * * *
26320140 ATTTATGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGGTTCCGAT
1 ATATATGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCGAT
26320196 ATAT
1 ATAT
26320200 GTGATTACAT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 104 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (56 bp):
ATATATGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCGAT
Found at i:26320236 original size:58 final size:57
Alignment explanation
Indices: 26320039--26320221 Score: 223
Period size: 56 Copynumber: 3.2 Consensus size: 57
26320029 TATATGTGCG
* * *
26320039 AGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCCAATATATGTG--TGC
1 AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGATTGC
*
26320094 AAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATAT-T-T-ATGTGC
1 -AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGAT-TGC
* * * *
26320150 GAGTAAGACCACGTTTAATACATTGGCATCAATATGTGGTTCCGATATATGTGATTAC
1 -AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGATTGC
26320208 ATGTAAGACCACGT
1 A-GTAAGACCACGT
26320222 CTGGGACGTT
Statistics
Matches: 112, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
54 1 0.01
55 1 0.01
56 91 0.81
57 2 0.02
58 15 0.13
59 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (57 bp):
AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGATTGC
Found at i:26321074 original size:13 final size:13
Alignment explanation
Indices: 26321058--26321092 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
26321048 TGAATGTAAG
*
26321058 TTTGGCTATGATA
1 TTTGACTATGATA
26321071 TTTGACTATGATA
1 TTTGACTATGATA
26321084 TTTGACTAT
1 TTTGACTAT
26321093 CTATGTTCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (13 bp):
TTTGACTATGATA
Found at i:26354092 original size:60 final size:59
Alignment explanation
Indices: 26353955--26354103 Score: 151
Period size: 60 Copynumber: 2.5 Consensus size: 59
26353945 CTATTCAGAA
*
26353955 ATCAGAGCTAT-TTGGGCCTTAGCCCATAACAATATTAATCTAGGCCATAGCCCCATACAG
1 ATCAGAG-TATATTGGGCC-TAGCCCATATCAATATTAATCTAGGCCATAGCCCCATACAG
* * * * * *
26354015 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATTAATCTGGGTCGTAGCCCTATTACA-
1 -ATCAGAGTATATTGGGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCCCA-TACAG
*
26354075 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATATTGGGCCTAGCCCATAT
26354104 TAACACAGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
59 4 0.05
60 54 0.72
61 17 0.23
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATATTGGGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCCCATACAG
Found at i:26354121 original size:20 final size:19
Alignment explanation
Indices: 26354096--26354139 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
26354086 ATTGGGCCTT
26354096 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTT-G
*
26354116 GCCCATTTCAATACAGTTG
1 GCCCATTTCAACACAGTTG
26354135 GCCCA
1 GCCCA
26354140 CAGCAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (19 bp):
GCCCATTTCAACACAGTTG
Found at i:26356532 original size:19 final size:18
Alignment explanation
Indices: 26356495--26356538 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
26356485 ATACATACAG
26356495 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
26356512 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
26356531 TACTAATT
1 TAATAATT
26356539 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:26364215 original size:13 final size:13
Alignment explanation
Indices: 26364197--26364222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26364187 TCTCAATTCG
26364197 GTGGAAAATGAGC
1 GTGGAAAATGAGC
26364210 GTGGAAAATGAGC
1 GTGGAAAATGAGC
26364223 ACCAGGGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.38, T:0.15
Consensus pattern (13 bp):
GTGGAAAATGAGC
Found at i:26370417 original size:25 final size:25
Alignment explanation
Indices: 26370389--26370437 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
26370379 CCAGTAGGAG
*
26370389 TGTAACTCTTCCATTGATCAACCAA
1 TGTAACTCTTCCACTGATCAACCAA
26370414 TGTAACTCTTCCACTGATCAACCA
1 TGTAACTCTTCCACTGATCAACCA
26370438 CCGATAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (25 bp):
TGTAACTCTTCCACTGATCAACCAA
Found at i:26370811 original size:13 final size:13
Alignment explanation
Indices: 26370795--26370819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26370785 TTTTTCAAGA
26370795 AAATTCTTTAATC
1 AAATTCTTTAATC
26370808 AAATTCTTTAAT
1 AAATTCTTTAAT
26370820 TGAATAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:26378056 original size:143 final size:141
Alignment explanation
Indices: 26377848--26378139 Score: 548
Period size: 143 Copynumber: 2.1 Consensus size: 141
26377838 TGAGTTAAAT
*
26377848 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
26377913 GAGTGAGTTAGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTAGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
26377978 GTGTGCATGAGTA
129 GTGTGCATGAGTA
26377991 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
*
26378056 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTAGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
26378121 GTGCATGAGTA
131 GTGCATGAGTA
26378132 TTCGGCCA
1 TTCGGCCA
26378140 AGCTATAGAA
Statistics
Matches: 147, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
141 26 0.18
143 121 0.82
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTAGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:26378817 original size:29 final size:29
Alignment explanation
Indices: 26378784--26378915 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
26378774 GTGACGAGAT
*
26378784 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
26378813 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
26378842 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
26378871 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
26378900 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
26378916 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:26386013 original size:143 final size:141
Alignment explanation
Indices: 26385805--26386099 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
26385795 TGAGTTAAAT
*
26385805 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
26385870 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
26385935 GTGTGCATGAGTA
129 GTGTGCATGAGTA
26385948 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
26386013 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
26386078 GTGCATGAGTA
131 GTGCATGAGTA
26386089 TTCGGCCATGC
1 TTCGGCCATGC
26386100 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:26386776 original size:29 final size:29
Alignment explanation
Indices: 26386743--26386871 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
26386733 GTGACGAGAT
26386743 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
26386772 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
26386801 AGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** *
26386830 ---CACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
26386856 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
26386872 AGCTCGAAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 23 0.26
29 66 0.74
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:26386870 original size:55 final size:56
Alignment explanation
Indices: 26386744--26386862 Score: 159
Period size: 55 Copynumber: 2.1 Consensus size: 56
26386734 TGACGAGATT
* ** *
26386744 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATA--GCACTAAGTGTGCAAGCTGGAAAAATAA
* *
26386802 GGCACTAAGTGTGCATGCTGGAAATATA-CACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATATAGCACTAAGTGTGCAAGCTGGAAAAATAA
26386857 GGCACT
1 GGCACT
26386863 GGGTGTGCGA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 28 0.51
58 27 0.49
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (56 bp):
GGCACTAAGTGTGCATGCTGGAAATATAGCACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:26388821 original size:28 final size:29
Alignment explanation
Indices: 26388754--26388824 Score: 85
Period size: 28 Copynumber: 2.5 Consensus size: 29
26388744 ATAGTGAATC
*
26388754 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACATTCAACT
26388783 CGCACAC-TAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATACATTC-AACT
**
26388810 CTTACACTTAGTGCT
1 CGCACACTTAGTGCT
26388825 GTACAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 2 0.05
27 9 0.24
28 19 0.51
29 7 0.19
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATACATTCAACT
Found at i:26392700 original size:2 final size:2
Alignment explanation
Indices: 26392693--26392727 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26392683 TGCTATTATG
26392693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26392728 CGCATGTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26395091 original size:13 final size:13
Alignment explanation
Indices: 26395073--26395097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26395063 CTAATATTTT
26395073 TCAAATTCTTTAA
1 TCAAATTCTTTAA
26395086 TCAAATTCTTTA
1 TCAAATTCTTTA
26395098 GTTGAATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TCAAATTCTTTAA
Found at i:26396331 original size:2 final size:2
Alignment explanation
Indices: 26396316--26396392 Score: 100
Period size: 2 Copynumber: 38.5 Consensus size: 2
26396306 ATAGTTTGTA
* *
26396316 TG TG TG TC TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * **
26396358 TG TG TG TG CG TG TG TG AG TG TG TG CA TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26396393 TCTTGGCCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.04, C:0.04, G:0.45, T:0.47
Consensus pattern (2 bp):
TG
Found at i:26397260 original size:12 final size:12
Alignment explanation
Indices: 26397243--26397267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26397233 ATCTCTTCTC
26397243 TTTATTTATATA
1 TTTATTTATATA
26397255 TTTATTTATATA
1 TTTATTTATATA
26397267 T
1 T
26397268 AATTGGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTTATATA
Found at i:26401038 original size:13 final size:13
Alignment explanation
Indices: 26401022--26401053 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26401012 ATTAAAAATC
*
26401022 ATAAACAAAATTT
1 ATAAAAAAAATTT
26401035 ATAAAAAAAATTT
1 ATAAAAAAAATTT
26401048 ATAAAA
1 ATAAAA
26401054 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
ATAAAAAAAATTT
Found at i:26401217 original size:22 final size:25
Alignment explanation
Indices: 26401170--26401220 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
26401160 GAAATTATTA
26401170 TTTTCTAATAAAAAATTATAACTTC
1 TTTTCTAATAAAAAATTATAACTTC
*
26401195 TTTT-TAA-AAAAAATTAT-AGTTC
1 TTTTCTAATAAAAAATTATAACTTC
26401217 TTTT
1 TTTT
26401221 ATGATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 8 0.32
23 10 0.40
24 3 0.12
25 4 0.16
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (25 bp):
TTTTCTAATAAAAAATTATAACTTC
Found at i:26403321 original size:15 final size:15
Alignment explanation
Indices: 26403301--26403329 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26403291 AGCAATTCAG
26403301 GTATGGATCATTGGT
1 GTATGGATCATTGGT
26403316 GTATGGATCATTGG
1 GTATGGATCATTGG
26403330 AAAGTAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.34, T:0.38
Consensus pattern (15 bp):
GTATGGATCATTGGT
Found at i:26411483 original size:12 final size:12
Alignment explanation
Indices: 26411466--26411498 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
26411456 GAGATAAAGA
26411466 AGAAAGAGAGAG
1 AGAAAGAGAGAG
26411478 AGAAAGAGAGAG
1 AGAAAGAGAGAG
*
26411490 AGAGAGAGA
1 AGAAAGAGA
26411499 TGAAATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (12 bp):
AGAAAGAGAGAG
Found at i:26415480 original size:13 final size:13
Alignment explanation
Indices: 26415457--26415492 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
26415447 TCTCTTTTCG
*
26415457 TTTTTAGTTTCTT
1 TTTTTATTTTCTT
*
26415470 TTTTTCTTTTCTT
1 TTTTTATTTTCTT
26415483 TTTTTATTTT
1 TTTTTATTTT
26415493 TTCATCACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.08, G:0.03, T:0.83
Consensus pattern (13 bp):
TTTTTATTTTCTT
Found at i:26416223 original size:3 final size:3
Alignment explanation
Indices: 26416215--26416242 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26416205 CCTACTTAGT
26416215 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
26416243 TATTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:26418072 original size:46 final size:46
Alignment explanation
Indices: 26418011--26418141 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
26418001 GATATTTGGG
* * *
26418011 CATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
26418057 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
*** * *
26418103 TGCCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
26418142 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
Found at i:26423235 original size:14 final size:14
Alignment explanation
Indices: 26423218--26423248 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26423208 AGTAAAATAT
*
26423218 TTTCTGGAAAATGA
1 TTTCTGAAAAATGA
26423232 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
26423246 TTT
1 TTT
26423249 ACCTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:26423287 original size:19 final size:20
Alignment explanation
Indices: 26423239--26423295 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
26423229 TGATTTCTGA
*
26423239 AAAATGATTTACCTTTCTAG
1 AAAATGATTTACTTTTCTAG
* * *
26423259 AAAATAATTTAATTTTTTAG
1 AAAATGATTTACTTTTCTAG
26423279 -AAATGATTTACTTTTCT
1 AAAATGATTTACTTTTCT
26423296 GGTGTTTGGA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (20 bp):
AAAATGATTTACTTTTCTAG
Found at i:26423397 original size:18 final size:20
Alignment explanation
Indices: 26423371--26423415 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
26423361 AAAATCTGTT
*
26423371 TTTACATATAT-TAAC-AAA
1 TTTATATATATATAACTAAA
*
26423389 TTTATATATATATTACTAAA
1 TTTATATATATATAACTAAA
26423409 TTTATAT
1 TTTATAT
26423416 TTTAAACTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 3 0.13
20 10 0.43
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTATATATATATAACTAAA
Found at i:26423401 original size:20 final size:20
Alignment explanation
Indices: 26423376--26423415 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26423366 CTGTTTTTAC
26423376 ATATATTAAC-AAATTTATAT
1 ATATATT-ACTAAATTTATAT
26423396 ATATATTACTAAATTTATAT
1 ATATATTACTAAATTTATAT
26423416 TTTAAACTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTACTAAATTTATAT
Found at i:26427702 original size:16 final size:17
Alignment explanation
Indices: 26427662--26427705 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
26427652 TTTAGTCCTA
26427662 TATTTATTTTATTATTC
1 TATTTATTTTATTATTC
*
26427679 TATATATTTT-TTATT-
1 TATTTATTTTATTATTC
26427694 TGATTTATTTTA
1 T-ATTTATTTTA
26427706 ATTTTACTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 13 0.57
17 9 0.39
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTTATTTTATTATTC
Found at i:26427816 original size:20 final size:19
Alignment explanation
Indices: 26427782--26427833 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
26427772 TTAATTCTCT
26427782 CATA-ATTAT-TATTTTTA
1 CATATATTATATATTTTTA
*
26427799 TATATATTATCATATTTTTA
1 CATATATTAT-ATATTTTTA
26427819 CATATATTATATATT
1 CATATATTATATATT
26427834 CATTTACGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 3 0.10
18 5 0.17
19 5 0.17
20 17 0.57
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (19 bp):
CATATATTATATATTTTTA
Found at i:26433310 original size:39 final size:39
Alignment explanation
Indices: 26433267--26433345 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
26433257 AATGGATCAA
*
26433267 ACATGTTGATATCATCCAATTAAAATAGACAGCTTTCAT
1 ACATGTTGATATCATCCAACTAAAATAGACAGCTTTCAT
*
26433306 ACATGTTGATATCATCCAACTAAAATAGACGGCTTTCAT
1 ACATGTTGATATCATCCAACTAAAATAGACAGCTTTCAT
26433345 A
1 A
26433346 GATTAATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (39 bp):
ACATGTTGATATCATCCAACTAAAATAGACAGCTTTCAT
Found at i:26434707 original size:24 final size:23
Alignment explanation
Indices: 26434679--26434730 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
26434669 CCTTAGAAAG
26434679 AGAGATTTGCCTTTGCCTGAGAA
1 AGAGATTTGCCTTTGCCTGAGAA
*
26434702 ATGAGATTTGCCTTTGGCTGAGAA
1 A-GAGATTTGCCTTTGCCTGAGAA
26434726 AGAGA
1 AGAGA
26434731 GAAAAAGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (23 bp):
AGAGATTTGCCTTTGCCTGAGAA
Found at i:26437616 original size:46 final size:46
Alignment explanation
Indices: 26437549--26437640 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
26437539 AAGGGATGAA
26437549 AAATTGAGAGAAGCATTCCATCCAGGTAACATACATACTGCTGTTT
1 AAATTGAGAGAAGCATTCCATCCAGGTAACATACATACTGCTGTTT
26437595 AAATTGAGAGAAGCATTCCATCCAGGTAACATACATACTGCTGTTT
1 AAATTGAGAGAAGCATTCCATCCAGGTAACATACATACTGCTGTTT
26437641 GTTGCCACCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (46 bp):
AAATTGAGAGAAGCATTCCATCCAGGTAACATACATACTGCTGTTT
Found at i:26449057 original size:19 final size:18
Alignment explanation
Indices: 26449031--26449245 Score: 74
Period size: 20 Copynumber: 11.1 Consensus size: 18
26449021 TTTTGGTATA
26449031 ATAATTTTTATATTTTTT
1 ATAATTTTTATATTTTTT
26449049 ATGAA-TTTTATATTTCTTT
1 AT-AATTTTTATATTT-TTT
*
26449068 ATATTTTTTATAATTTTCTT
1 ATAATTTTTAT-ATTTT-TT
* * **
26449088 ACTACTTTATA-AAATTTT
1 A-TAATTTTTATATTTTTT
* * * **
26449106 ATAATTTTTTTCTATAAT
1 ATAATTTTTATATTTTTT
26449124 ACTATATATTTTATATTGTTTT
1 A-TA-AT-TTTTATATT-TTTT
* *
26449146 ATTATTTTTATCAAATTTTT
1 ATAATTTTTAT--ATTTTTT
** *
26449166 ATCAATTTTTAATAAATTTA
1 AT-AATTTTT-ATATTTTTT
* *
26449186 AAATATTTTTATAGTTTTT
1 ATA-ATTTTTATATTTTTT
* *
26449205 ATTAAAATTTTATAATTTTT
1 A-T-AATTTTTATATTTTTT
* *
26449225 ATAAATTTTATTTATTTTT
1 ATAATTTTTATAT-TTTTT
26449244 AT
1 AT
26449246 CTTTTTGCCA
Statistics
Matches: 147, Mismatches: 31, Indels: 37
0.68 0.14 0.17
Matches are distributed among these distances:
17 6 0.04
18 29 0.20
19 41 0.28
20 43 0.29
21 23 0.16
22 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (18 bp):
ATAATTTTTATATTTTTT
Found at i:26449095 original size:28 final size:27
Alignment explanation
Indices: 26449037--26449113 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
26449027 TATAATAATT
* *
26449037 TTTATATTTTTTATGAATTTTATATTTC
1 TTTATATTTTTTAT-AATTTTATACTAC
*
26449065 TTTATATTTTTTATAATTTTCTTACTAC
1 TTTATATTTTTTATAATTTT-ATACTAC
**
26449093 TTTATAAAATTTTATAATTTT
1 TTTAT-ATTTTTTATAATTTT
26449114 TTTCTATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.14
28 23 0.55
29 13 0.31
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTATATTTTTTATAATTTTATACTAC
Found at i:26449204 original size:29 final size:29
Alignment explanation
Indices: 26449158--26449234 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
26449148 TATTTTTATC
26449158 AAATTTTTATCAATTTTTAAT-AAATTTAA
1 AAATTTTTAT-AATTTTTAATAAAATTTAA
* * *
26449187 AATATTTTTATAGTTTTTATTAAAATTTTA
1 AA-ATTTTTATAATTTTTAATAAAATTTAA
* *
26449217 TAATTTTTATAAATTTTA
1 AAATTTTTATAATTTTTA
26449235 TTTATTTTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 24 0.60
30 16 0.40
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (29 bp):
AAATTTTTATAATTTTTAATAAAATTTAA
Found at i:26449224 original size:9 final size:9
Alignment explanation
Indices: 26449031--26449245 Score: 78
Period size: 9 Copynumber: 22.2 Consensus size: 9
26449021 TTTTGGTATA
26449031 ATAATTTTT
1 ATAATTTTT
*
26449040 ATATTTTTT
1 ATAATTTTT
26449049 ATGAA-TTTT
1 AT-AATTTTT
*
26449058 ATATTTCTTT
1 ATAATT-TTT
*
26449068 ATATTTTTT
1 ATAATTTTT
26449077 ATAATTTTCT
1 ATAATTTT-T
* *
26449087 -TACTACTTT
1 ATAAT-TTTT
*
26449096 ATAAAATTTT
1 AT-AATTTTT
26449106 ATAATTTTTTTCT
1 ATAA---TTTT-T
**
26449119 ATAA-TACT
1 ATAATTTTT
26449127 AT-ATATTTT
1 ATAAT-TTTT
*
26449136 ATATTGTTTT
1 ATAAT-TTTT
*
26449146 ATTATTTTT
1 ATAATTTTT
26449155 ATCAAATTTTT
1 AT--AATTTTT
26449166 ATCAATTTTT
1 AT-AATTTTT
* *
26449176 AATAAATTTA
1 -ATAATTTTT
*
26449186 AAATATTTTT
1 ATA-ATTTTT
*
26449196 ATAGTTTTT
1 ATAATTTTT
*
26449205 ATTAAAATTTT
1 A-T-AATTTTT
26449216 ATAATTTTT
1 ATAATTTTT
*
26449225 ATAAATTTT
1 ATAATTTTT
*
26449234 ATTTATTTTT
1 A-TAATTTTT
26449244 AT
1 AT
26449246 CTTTTTGCCA
Statistics
Matches: 152, Mismatches: 33, Indels: 42
0.67 0.15 0.19
Matches are distributed among these distances:
7 1 0.01
8 4 0.03
9 68 0.45
10 54 0.36
11 17 0.11
12 3 0.02
13 5 0.03
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:26449233 original size:10 final size:10
Alignment explanation
Indices: 26449149--26449233 Score: 70
Period size: 11 Copynumber: 8.5 Consensus size: 10
26449139 TTGTTTTATT
26449149 ATTTTTATCAA
1 ATTTTTAT-AA
*
26449160 ATTTTTATCA
1 ATTTTTATAA
26449170 ATTTTTAATAA
1 ATTTTT-ATAA
*
26449181 A--TTTAAAA
1 ATTTTTATAA
26449189 TATTTTTAT-A
1 -ATTTTTATAA
*
26449199 GTTTTTATTAA
1 ATTTTTA-TAA
*
26449210 AATTTTAT-A
1 ATTTTTATAA
26449219 ATTTTTATAA
1 ATTTTTATAA
26449229 ATTTT
1 ATTTT
26449234 ATTTATTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
8 3 0.05
9 18 0.31
10 16 0.27
11 22 0.37
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:26449235 original size:29 final size:30
Alignment explanation
Indices: 26449158--26449236 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 30
26449148 TATTTTTATC
* *
26449158 AAATTTTTATCAATTTT-TAATAAATTTAA
1 AAATTTTTATAAATTTTATTATAAATTTAA
** *
26449187 AATATTTTTATAGTTTTTATTA-AAATTTTA
1 AA-ATTTTTATAAATTTTATTATAAATTTAA
*
26449217 TAATTTTTATAAATTTTATT
1 AAATTTTTATAAATTTTATT
26449237 TATTTTTATC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 18 0.45
30 20 0.50
31 2 0.05
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (30 bp):
AAATTTTTATAAATTTTATTATAAATTTAA
Found at i:26449815 original size:84 final size:89
Alignment explanation
Indices: 26449704--26449917 Score: 223
Period size: 86 Copynumber: 2.5 Consensus size: 89
26449694 TAGTGAAAAA
* * *** *
26449704 GAAAAAAAATAGGGGCTTACTTGCTTTTTTTTTTTAAA-TTTGAGGAC-TTTTTT-ATACATTTT
1 GAAAAAAAATAGGGGCTTAATTACTTTTTTTTGAAAAAGTTTGAGAACTTTTTTTGATACATTTT
**
26449766 GACTGCTCAAATACACAATTGAGT
66 GAAAGCTCAAATACACAATTGAGT
*
26449790 GAAAAAAAA-A-GGGCTTAATTAC-TTTTTTTGAAAAAGTTTGAGAACTTTTTTTGTTACATTTT
1 GAAAAAAAATAGGGGCTTAATTACTTTTTTTTGAAAAAGTTTGAGAACTTTTTTTGATACATTTT
* * * *
26449852 GAAAGTTTAAGTACCCAATTGAGT
66 GAAAGCTCAAATACACAATTGAGT
* *
26449876 -AAAAAAAATAGGGGCTTAAATA-TTTTTTTT-AAAGA-TTTGAGA
1 GAAAAAAAATAGGGGCTTAATTACTTTTTTTTGAAAAAGTTTGAGA
26449918 TCATTTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
83 10 0.09
84 18 0.17
85 22 0.21
86 40 0.37
87 17 0.16
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (89 bp):
GAAAAAAAATAGGGGCTTAATTACTTTTTTTTGAAAAAGTTTGAGAACTTTTTTTGATACATTTT
GAAAGCTCAAATACACAATTGAGT
Found at i:26451827 original size:25 final size:25
Alignment explanation
Indices: 26451791--26451839 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26451781 CCAACGATAT
*
26451791 CCAACAGTTTTAAGTATTCACATTG
1 CCAACAGTTTTAAGTAATCACATTG
*
26451816 CCAACA-TATTTAATTAATCACATT
1 CCAACAGT-TTTAAGTAATCACATT
26451840 TTATTACGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (25 bp):
CCAACAGTTTTAAGTAATCACATTG
Found at i:26452245 original size:32 final size:32
Alignment explanation
Indices: 26452184--26452265 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
26452174 TAGAACCATG
* *
26452184 CATATATA-TTATATATGTATAATCACCCACGT
1 CATATATATTTATATATATATAAACACCCAC-T
26452216 -ATATATATTTATATATATATACAAC-CCCACT
1 CATATATATTTATATATATATA-AACACCCACT
* *
26452247 CATATATATCTATGTATAT
1 CATATATATTTATATATAT
26452266 TACCAACTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
31 8 0.19
32 33 0.77
33 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.40
Consensus pattern (32 bp):
CATATATATTTATATATATATAAACACCCACT
Found at i:26464447 original size:16 final size:16
Alignment explanation
Indices: 26464426--26464457 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26464416 ACTGAGTTGA
26464426 GTGAGCGATGTGTTCT
1 GTGAGCGATGTGTTCT
26464442 GTGAGCGATGTGTTCT
1 GTGAGCGATGTGTTCT
26464458 AGGTCCAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (16 bp):
GTGAGCGATGTGTTCT
Found at i:26466118 original size:17 final size:16
Alignment explanation
Indices: 26466096--26466129 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26466086 AAATGGGCCA
26466096 TGTGGGCCACACAAGAG
1 TGTGGGCC-CACAAGAG
*
26466113 TGTGGGCCCACACGAG
1 TGTGGGCCCACAAGAG
26466129 T
1 T
26466130 AAACCACACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (16 bp):
TGTGGGCCCACAAGAG
Found at i:26466642 original size:39 final size:40
Alignment explanation
Indices: 26466573--26466649 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
26466563 GTATTTTATG
* *
26466573 GTGTGTAGGGTTGGATGGGTCAATTATAT-CCCATATACA
1 GTGTGTAGGGATGGATGCGTCAATTATATCCCCATATACA
* * *
26466612 GTGTGTAGGGATGGGTGCGTCGATTTTATCCCCATATA
1 GTGTGTAGGGATGGATGCGTCAATTATATCCCCATATA
26466650 GTGTGTTGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 24 0.75
40 8 0.25
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (40 bp):
GTGTGTAGGGATGGATGCGTCAATTATATCCCCATATACA
Found at i:26468971 original size:41 final size:41
Alignment explanation
Indices: 26468925--26469061 Score: 132
Period size: 41 Copynumber: 3.4 Consensus size: 41
26468915 GGCGCTAATG
* * * * *
26468925 GAAAAACGCCGTAATATGTAAATTAGTAGCGGGGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGTAGTAGCGGCGTTTATGA
* * *
26468966 GAAAAACGCCACAAAAGGTCAAGTATTAGCGGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGTAGTAGCGGCGTTTATGA
* * * * ** *
26469007 GAAAAATGCCGCAAAAGGTCAAGCATTAGCGGC-ACTAGGA
1 GAAAAACGCCGCAAAAGGTAAAGTAGTAGCGGCGTTTATGA
26469047 GAAAAACGCCGCAAA
1 GAAAAACGCCGCAAA
26469062 GTATAATCTT
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 18 0.22
41 63 0.78
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.18
Consensus pattern (41 bp):
GAAAAACGCCGCAAAAGGTAAAGTAGTAGCGGCGTTTATGA
Found at i:26469060 original size:40 final size:41
Alignment explanation
Indices: 26468964--26469061 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
26468954 CGGGGTTTAT
* * ** *
26468964 GAGAAAAACGCCACAAAAGGTCAAGTATTAGCGGCGTTTAT
1 GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACTAG
*
26469005 GAGAAAAATGCCGCAAAAGGTCAAGCATTAGCGGC-ACTAG
1 GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACTAG
26469045 GAGAAAAACGCCGCAAA
1 GAGAAAAACGCCGCAAA
26469062 GTATAATCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 18 0.36
41 32 0.64
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (41 bp):
GAGAAAAACGCCGCAAAAGGTCAAGCATTAGCGGCGACTAG
Found at i:26469272 original size:25 final size:25
Alignment explanation
Indices: 26469237--26469291 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26469227 GACTGTCTCC
26469237 TCTGCCGCATCG-CTGTCGACACTCA
1 TCTGCCGCATCGTC-GTCGACACTCA
* *
26469262 TCTGCCTCATCGTCGTCGACACTCC
1 TCTGCCGCATCGTCGTCGACACTCA
26469287 TCTGC
1 TCTGC
26469292 TACATCACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.13, C:0.42, G:0.18, T:0.27
Consensus pattern (25 bp):
TCTGCCGCATCGTCGTCGACACTCA
Found at i:26469297 original size:25 final size:24
Alignment explanation
Indices: 26469233--26469297 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 24
26469223 CGTCGACTGT
*
26469233 CTCCTCTGCCGCATCGCTGTCGACA
1 CTCCTCTG-CTCATCGCTGTCGACA
*
26469258 CTCATCTGCCTCATCG-TCGTCGACA
1 CTCCTCTG-CTCATCGCT-GTCGACA
26469283 CTCCTCTGCTACATC
1 CTCCTCTGCT-CATC
26469298 ACCGTGTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 32 0.91
ACGTcount: A:0.14, C:0.43, G:0.15, T:0.28
Consensus pattern (24 bp):
CTCCTCTGCTCATCGCTGTCGACA
Found at i:26471741 original size:35 final size:35
Alignment explanation
Indices: 26471673--26471738 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
26471663 TAATTGTGTT
26471673 ATTAATTTATTAATTTAAATTTTAAATTTAAATTC
1 ATTAATTTATTAATTTAAATTTTAAATTTAAATTC
*
26471708 ATTAATTT-TTATATTT-AGTTTTAAATTTAAA
1 ATTAATTTATTA-ATTTAAATTTTAAATTTAAA
26471739 ATTTTCATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (35 bp):
ATTAATTTATTAATTTAAATTTTAAATTTAAATTC
Found at i:26472215 original size:35 final size:35
Alignment explanation
Indices: 26472170--26472236 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
26472160 AAATTTAAAG
*
26472170 ATGATAATCATAACTTACATAAACGTTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
* *
26472205 ATGATTATCATAACTTATATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
26472237 AATAATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:26472470 original size:43 final size:43
Alignment explanation
Indices: 26472405--26472500 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
26472395 TGGGAAAAGC
* * * * *
26472405 AAGGTCACGTTCTTTAGTGACGTTTTTGGGGAAAGCACCGCTA
1 AAGGTCATGTTCTTTAGCGACGTTTGTAGGAAAAGCACCGCTA
*
26472448 AAGGTCATGTTCTTTAGCGACGTTTGTAGGAAAAGCGCCGCTA
1 AAGGTCATGTTCTTTAGCGACGTTTGTAGGAAAAGCACCGCTA
26472491 AAGGTCATGT
1 AAGGTCATGT
26472501 ACTATAGTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
AAGGTCATGTTCTTTAGCGACGTTTGTAGGAAAAGCACCGCTA
Found at i:26478503 original size:6 final size:6
Alignment explanation
Indices: 26478492--26478524 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
26478482 CTACTGATTT
26478492 TTTTTA TTTTTA -TTTTA -TTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
26478525 TTACAGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:26478514 original size:16 final size:15
Alignment explanation
Indices: 26478488--26478526 Score: 69
Period size: 16 Copynumber: 2.5 Consensus size: 15
26478478 GGCACTACTG
26478488 ATTTTTTTTATTTTT
1 ATTTTTTTTATTTTT
26478503 ATTTTATTTTATTTTT
1 ATTTT-TTTTATTTTT
26478519 ATTTTTTT
1 ATTTTTTT
26478527 ACAGTTTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (15 bp):
ATTTTTTTTATTTTT
Found at i:26481254 original size:11 final size:11
Alignment explanation
Indices: 26481237--26481266 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26481227 TAATGTCTTA
26481237 AGATAATCTAC
1 AGATAATCTAC
*
26481248 GGATAATCTAC
1 AGATAATCTAC
26481259 AGATAATC
1 AGATAATC
26481267 ATGCAATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (11 bp):
AGATAATCTAC
Found at i:26489425 original size:21 final size:19
Alignment explanation
Indices: 26489369--26489416 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
26489359 TAATAGTAGT
*
26489369 AATAATAA-AAATAAC-AA
1 AATAATAATAATTAACTAA
26489386 AATAATAATAATTAACTAA
1 AATAATAATAATTAACTAA
26489405 AATAA-AATAATT
1 AATAATAATAATT
26489417 TAAAACTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 8 0.29
18 13 0.46
19 7 0.25
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
AATAATAATAATTAACTAA
Found at i:26489496 original size:18 final size:18
Alignment explanation
Indices: 26489462--26489503 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26489452 GTAAGTAGAG
26489462 TAATAATAACAATAAAAA
1 TAATAATAACAATAAAAA
*
26489480 TAATACTAA-AATGAAAAA
1 TAATAATAACAAT-AAAAA
*
26489498 AAATAA
1 TAATAA
26489504 AAGTATTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (18 bp):
TAATAATAACAATAAAAA
Found at i:26492570 original size:28 final size:28
Alignment explanation
Indices: 26492528--26492606 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
26492518 GAATCATTCG
*
26492528 ATATTTCACACACTAAGTGCCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
* * *
26492556 ATATCTCGCATACTAAGTGTCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
* *
26492584 ATATTTCACACACTACGTGCCAT
1 ATATCTCACACACTAAGTGCCAT
26492607 ATTTGATATC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (28 bp):
ATATCTCACACACTAAGTGCCATTCTCA
Found at i:26496380 original size:12 final size:12
Alignment explanation
Indices: 26496357--26496405 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
26496347 AATTAGAATG
*
26496357 TAAAAATTAAAT
1 TAAAAATAAAAT
*
26496369 TAAAAACAAAAT
1 TAAAAATAAAAT
*
26496381 TATTAAAATAAAAA
1 TA--AAAATAAAAT
26496395 TAAAAATAAAA
1 TAAAAATAAAA
26496406 ATGATAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 21 0.68
14 10 0.32
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAAATAAAAT
Found at i:26496387 original size:20 final size:20
Alignment explanation
Indices: 26496362--26496399 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26496352 GAATGTAAAA
*
26496362 ATTAAATTAAAAACAAAATT
1 ATTAAAATAAAAACAAAATT
*
26496382 ATTAAAATAAAAATAAAA
1 ATTAAAATAAAAACAAAA
26496400 ATAAAAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
ATTAAAATAAAAACAAAATT
Found at i:26496388 original size:26 final size:26
Alignment explanation
Indices: 26496359--26496418 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
26496349 TTAGAATGTA
* * *
26496359 AAAATTAAATTAAAAA-CAAAATTATT
1 AAAATTAAAATAAAAATAAAAATGA-T
*
26496385 AAAATAAAAATAAAAATAAAAATGAT
1 AAAATTAAAATAAAAATAAAAATGAT
26496411 AAAATTAA
1 AAAATTAA
26496419 TAGAAATAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (26 bp):
AAAATTAAAATAAAAATAAAAATGAT
Found at i:26499463 original size:28 final size:27
Alignment explanation
Indices: 26499400--26499469 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
26499390 ATAGTGAGTC
26499400 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
26499427 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
26499455 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26499470 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:26501710 original size:23 final size:23
Alignment explanation
Indices: 26501680--26501724 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
26501670 ACTTTTGTGA
26501680 AAGGATTTTCATGGAAACACCTT
1 AAGGATTTTCATGGAAACACCTT
26501703 AAGGATTTTCATGGAAACACCT
1 AAGGATTTTCATGGAAACACCT
26501725 CAAATGAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (23 bp):
AAGGATTTTCATGGAAACACCTT
Found at i:26501922 original size:30 final size:31
Alignment explanation
Indices: 26501864--26501923 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
26501854 TTTACGAGCC
*
26501864 TAGGGGCAAAATCATAAATTTTGTAAAAGTT
1 TAGGGGCAAAATCATAAATTTTGCAAAAGTT
*
26501895 TAGGGGCAAAAT-AGT-TATTTTGCAAAAGT
1 TAGGGGCAAAATCA-TAAATTTTGCAAAAGT
26501924 ATAAATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.32
Consensus pattern (31 bp):
TAGGGGCAAAATCATAAATTTTGCAAAAGTT
Found at i:26502562 original size:46 final size:46
Alignment explanation
Indices: 26502472--26502880 Score: 425
Period size: 46 Copynumber: 8.7 Consensus size: 46
26502462 CATTTCGTAT
* *
26502472 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTCTGTTATGAGA
1 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGACTATGTTATGAGA
* *
26502520 GCCAGTGTAAGACTATGTTGGACATGACATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGA
26502566 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGA
* *
26502612 GCCAGTGTAGGACCATGTTTGGAACATGACATCGACTATGTTATGAGA
1 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGACTATGTTATGAGA
* *
26502660 GCCAGTGTAAGACCATGTTGGACATGGCATCGGC-AT-TGACT-ATGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTA-TGA-GA
* * * * ***
26502705 GCCTGTGTAAGACCATGTTGGAAATGGCATCGGCCACCATATGAGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGA
* * ** *
26502751 GCCAGTGTAAGTCCATGTTGGACATGGCCTC-AGC-ATTGAGACGAGA
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGA-CTA-TGTTATGAGA
* * * ** *
26502797 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTCT-CGGCATGCGA
1 GCCAGTGTAAGACCATGT-T-GGACATGGCATC-GACTATGTTATGAGA
26502845 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 GCCAGTGTAAGACCATG-TT-GGACATGGCATCGAC
26502881 AATTCACCCT
Statistics
Matches: 309, Mismatches: 37, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
44 3 0.01
45 38 0.12
46 147 0.48
47 17 0.06
48 102 0.33
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGA
Found at i:26502650 original size:94 final size:92
Alignment explanation
Indices: 26502472--26502881 Score: 427
Period size: 94 Copynumber: 4.4 Consensus size: 92
26502462 CATTTCGTAT
* * * *
26502472 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTCTGTTATGAGAGCCAGTGTAAGACTATG
1 GCCAGTGTAAGACCATG-TTGG-ACATGGCATCGAC-ATGTGATGAGAGCCAGTGTAAGACCATG
*
26502537 TTGG-ACATGACATCGACTATGTTATGAGA
63 TTGGAACATGACATCGACTACGTTATGAGA
* *
26502566 GCCAGTGTAAGACCATGTTGGACATGGCATCGACTATGTTATGAGAGCCAGTGTAGGACCATGTT
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGAC-ATGTGATGAGAGCCAGTGTAAGACCATG-T
*
26502631 TGGAACATGACATCGACTATGTTATGAGA
64 TGGAACATGACATCGACTACGTTATGAGA
* *
26502660 GCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT-TGACT-ATGAGCCTGTGTAAGACCATGT
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGACATGTGA-TGA-GAGCCAGTGTAAGACCATGT
* * * **
26502723 TGGAA-ATGGCATCGGCCACCATATGAGA
64 TGGAACATGACATCGACTACGTTATGAGA
* * * * *
26502751 GCCAGTGTAAGTCCATGTTGGACATGGCCTC-AGCATTGAGACGAGAGCTAGTGTAAGACCATGT
1 GCCAGTGTAAGACCATGTTGGACATGGCATCGA-CA-TGTGATGAGAGCCAGTGTAAGACCATGT
* * * ** *
26502815 CTGGGACATGGCATCGGTCT-CGGCATGCGA
64 -TGGAACATGACATC-GACTACGTTATGAGA
26502845 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGACA
1 GCCAGTGTAAGACCATG-TT-GGACATGGCATCGACA
26502882 ATTCACCCTC
Statistics
Matches: 272, Mismatches: 30, Indels: 26
0.83 0.09 0.08
Matches are distributed among these distances:
91 48 0.18
92 66 0.24
93 35 0.13
94 105 0.39
95 4 0.01
96 13 0.05
97 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (92 bp):
GCCAGTGTAAGACCATGTTGGACATGGCATCGACATGTGATGAGAGCCAGTGTAAGACCATGTTG
GAACATGACATCGACTACGTTATGAGA
Found at i:26502813 original size:185 final size:186
Alignment explanation
Indices: 26502472--26502878 Score: 475
Period size: 185 Copynumber: 2.2 Consensus size: 186
26502462 CATTTCGTAT
* *
26502472 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTCTGTTATGAGAGCCAGTGTAAGACTATG
1 GCCAGTGTAAGACCATGTTTGG-ACATGGCATCGGCTCTGCTAT-AGAGCCAGTGTAAGACCATG
* * ***
26502537 TTGGACATGACATCGACTATGTTATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACTA
64 TTGGAAATGACATCGACCACCATATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACTA
** * * * * **
26502602 TGTTATGAGAGCCAGTGTAGGACCATGTTTGGAACATGACATC-GACTATGTTATGAGA
129 TGAGACGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGGACT-CGGCATGAGA
*
26502660 GCCAGTGTAAGACCATG-TTGGACATGGCATCGGCAT-TGACTAT-GAGCCTGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGACATGGCATCGGC-TCTG-CTATAGAGCCAGTGTAAGACCATG
* * * *
26502722 TTGGAAATGGCATCGGCCACCATATGAGAGCCAGTGTAAGTCCATGTTGGACATGGCCTC-AGC-
64 TTGGAAATGACATCGACCACCATATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGA-CT
* * * * *
26502785 ATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGGCATGCGA
128 A-TGAGACGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGGACTCGGCATGAGA
26502845 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTTT-GGACATGGCATCG
26502879 ACAATTCACC
Statistics
Matches: 187, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
184 2 0.01
185 127 0.68
186 20 0.11
187 21 0.11
188 17 0.09
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (186 bp):
GCCAGTGTAAGACCATGTTTGGACATGGCATCGGCTCTGCTATAGAGCCAGTGTAAGACCATGTT
GGAAATGACATCGACCACCATATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACTATG
AGACGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGGACTCGGCATGAGA
Found at i:26505371 original size:235 final size:233
Alignment explanation
Indices: 26504804--26505507 Score: 1255
Period size: 233 Copynumber: 3.0 Consensus size: 233
26504794 TCAATCCTCA
26504804 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
1 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
*
26504869 CAACAACTATAACAGAAAACAAAGAAATAGGACAACACTCCAATGCATGTATCAAACCACTATCT
66 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACCACTATCT
26504934 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
131 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
*
26504999 TGATGACTATTTGTGTTTTGCATTAATGAAAACAGTCC
196 TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
26505037 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
1 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
*
26505102 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACTACTATCT
66 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACCACTATCT
* *
26505167 TAATGATTACATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACACTGAAGCC
131 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
26505232 TGATGACTATTTGTGTTTTTTGCATTAATGAAAATAGTCC
196 TGATGACTATTTGTG--TTTTGCATTAATGAAAATAGTCC
* * * *
26505272 ACTTCCTTTTAGTATGTCTTCCTGTTAATACAAAATTTCAGTGAAGAAAATCTAGAACATATGAA
1 ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
* * *
26505337 CAAAAACTATAACAAAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAGCCACTATCT
66 CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACCACTATCT
* * *
26505402 TAATGGTTATATTCACCCCTACCTATACTCAATGCACAAATGAACCTCAAGGATACAATGAAGCC
131 TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
26505467 TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
196 TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
26505505 ACT
1 ACT
26505508 AAGCATCGTA
Statistics
Matches: 451, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
233 232 0.51
235 219 0.49
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (233 bp):
ACTTCCTTTTAGTATTTCTTCCTGTTAATACAAAATTTCAGTGAGGAAAATCTTGAACATACGAA
CAACAACTATAACAGAAAACAAAGAAATAGGACAAGACTCCAATGCATGTATCAAACCACTATCT
TAATGATTATATTCACCCCTAGCTATACTCAGTGCACAAATGAACCTCAAGGATACAATGAAGCC
TGATGACTATTTGTGTTTTGCATTAATGAAAATAGTCC
Found at i:26507286 original size:18 final size:18
Alignment explanation
Indices: 26507263--26507298 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26507253 CAAAATAGTT
* *
26507263 TATGCATATGTATGTATG
1 TATGCAAATGTACGTATG
26507281 TATGCAAATGTACGTATG
1 TATGCAAATGTACGTATG
26507299 CAGATGTACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (18 bp):
TATGCAAATGTACGTATG
Found at i:26507291 original size:14 final size:14
Alignment explanation
Indices: 26507274--26507307 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26507264 ATGCATATGT
*
26507274 ATGTATGTATGCAA
1 ATGTACGTATGCAA
*
26507288 ATGTACGTATGCAG
1 ATGTACGTATGCAA
26507302 ATGTAC
1 ATGTAC
26507308 CAATTTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (14 bp):
ATGTACGTATGCAA
Done.