Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 97 of 378
Found at i:26508272 original size:6 final size:6
Alignment explanation
Indices: 26508261--26508336 Score: 125
Period size: 6 Copynumber: 12.5 Consensus size: 6
26508251 AAGATGAATA
26508261 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
26508309 AAAAGT AAAAAT AAATAAT AATAAT AAA
1 AAAAAT AAAAAT AAA-AAT AAAAAT AAA
26508337 TAAATAAACT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
6 60 0.92
7 5 0.08
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:26508349 original size:13 final size:14
Alignment explanation
Indices: 26508257--26508352 Score: 84
Period size: 12 Copynumber: 7.4 Consensus size: 14
26508247 AAGGAAGATG
*
26508257 AATAAAAAATAA-A
1 AATAAATAATAATA
26508270 AATAAA-AATAA-A
1 AATAAATAATAATA
26508282 AATAAA-AATAA-A
1 AATAAATAATAATA
26508294 AATAAA-AATAA-A
1 AATAAATAATAATA
*
26508306 AATAAAAGTAAAAATA
1 AAT-AAA-TAATAATA
26508322 AAT-AATAATAATA
1 AATAAATAATAATA
*
26508335 AATAAATAA-ACTA
1 AATAAATAATAATA
26508348 AATAA
1 AATAA
26508353 CTATTTTAAC
Statistics
Matches: 75, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
12 33 0.44
13 27 0.36
14 7 0.09
15 4 0.05
16 4 0.05
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.20
Consensus pattern (14 bp):
AATAAATAATAATA
Found at i:26508352 original size:17 final size:17
Alignment explanation
Indices: 26508257--26508343 Score: 73
Period size: 15 Copynumber: 5.5 Consensus size: 17
26508247 AAGGAAGATG
* *
26508257 AATAAAAAATAAAAAT-
1 AATAAATAATAATAATA
*
26508273 AA-AAATAAAAATAA-A
1 AATAAATAATAATAATA
*
26508288 AATAAA-AATAAAAAT-
1 AATAAATAATAATAATA
26508303 AA-AAATAA-AAGTAA-A
1 AATAAATAATAA-TAATA
26508318 AATAAATAATAATAATA
1 AATAAATAATAATAATA
26508335 AATAAATAA
1 AATAAATAA
26508344 ACTAAATAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
14 5 0.09
15 25 0.45
16 14 0.25
17 12 0.21
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (17 bp):
AATAAATAATAATAATA
Found at i:26509860 original size:8 final size:8
Alignment explanation
Indices: 26509847--26509874 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
26509837 TGAGAAAAAT
26509847 AAAATAAA
1 AAAATAAA
26509855 AAAATAAA
1 AAAATAAA
26509863 AAAATAAA
1 AAAATAAA
26509871 AAAA
1 AAAA
26509875 AAAGAGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:26523131 original size:6 final size:6
Alignment explanation
Indices: 26523111--26523143 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
26523101 CTATTCAAAA
*
26523111 TTTTCT TCTTC- TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
26523144 TGTTACATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:26523142 original size:11 final size:12
Alignment explanation
Indices: 26523111--26523143 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26523101 CTATTCAAAA
*
26523111 TTTTCTTCTTC-
1 TTTTCTTTTTCT
26523122 TTTTCTTTTTCT
1 TTTTCTTTTTCT
26523134 TTTTCTTTTT
1 TTTTCTTTTT
26523144 TGTTACATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:26527070 original size:29 final size:29
Alignment explanation
Indices: 26527045--26527102 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
26527035 TCTGGCCTAG
* * *
26527045 TTCATATTCATATGGCCTACTAGGCCCAA
1 TTCACATTCATAAGGCCCACTAGGCCCAA
*
26527074 TTCACATTCATAAGGCCCATTAGGCCCAA
1 TTCACATTCATAAGGCCCACTAGGCCCAA
26527103 ATCATATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TTCACATTCATAAGGCCCACTAGGCCCAA
Found at i:26530089 original size:20 final size:20
Alignment explanation
Indices: 26530066--26530104 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26530056 CGTGTGACTA
26530066 CAAGG-ACACGGCCATGTGAC
1 CAAGGCACA-GGCCATGTGAC
*
26530086 CAAGGCACAGGCCCTGTGA
1 CAAGGCACAGGCCATGTGA
26530105 AATCAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.10
Consensus pattern (20 bp):
CAAGGCACAGGCCATGTGAC
Found at i:26532045 original size:93 final size:93
Alignment explanation
Indices: 26531886--26532058 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
26531876 TGCCCATAAG
* * * *
26531886 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26531951 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
26531979 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26532044 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
26532059 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26532047 original size:46 final size:46
Alignment explanation
Indices: 26531879--26532054 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
26531869 TGTAACCTGC
* * * * * *
26531879 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
26531925 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
26531975 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
26532018 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26532055 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:26532073 original size:46 final size:47
Alignment explanation
Indices: 26531930--26532073 Score: 140
Period size: 46 Copynumber: 3.1 Consensus size: 47
26531920 CGCATCCATG
* * *
26531930 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* *
26531978 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
26532023 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
26532069 AGTGA
1 AGTGA
26532074 CATGTCACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 35 0.44
47 30 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:26537864 original size:18 final size:18
Alignment explanation
Indices: 26537841--26537882 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
26537831 CCATACAAAA
*
26537841 TCAGATTCAAATTTAGAT
1 TCAGATCCAAATTTAGAT
26537859 TCAGATCCAAATTTAGAT
1 TCAGATCCAAATTTAGAT
26537877 TACAGA
1 T-CAGA
26537883 AACAGATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (18 bp):
TCAGATCCAAATTTAGAT
Found at i:26543178 original size:47 final size:47
Alignment explanation
Indices: 26543124--26543382 Score: 383
Period size: 47 Copynumber: 5.5 Consensus size: 47
26543114 TTAGGATTTT
* ** * *
26543124 ATGTGATGAATGAGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26543171 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26543218 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26543265 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26543312 ATGTGATGCATGTGAGCATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26543359 ATGTGGTGAATATGAACATGCATA
1 ATGTGATGAATGTGAACATGCATA
26543383 ATGGCTAATG
Statistics
Matches: 191, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 191 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26543273 original size:25 final size:25
Alignment explanation
Indices: 26543198--26543273 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
26543188 ATGAATATAT
26543198 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
26543223 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
26543245 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
26543270 GTGA
1 GTGA
26543274 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:26543437 original size:48 final size:48
Alignment explanation
Indices: 26543382--26543597 Score: 362
Period size: 48 Copynumber: 4.5 Consensus size: 48
26543372 GAACATGCAT
*
26543382 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
26543430 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
26543478 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
* *
26543526 AATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCT-AATGTG-AA-ATATGTATGAGATATGCATATGTGGTAAAGCCG
*
26543576 AATGGCTAGTGTGAAATATGTA
1 AATGGCTAATGTGAAATATGTA
26543598 GGCGATGTGC
Statistics
Matches: 159, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
47 1 0.01
48 112 0.70
49 4 0.03
50 41 0.26
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
Found at i:26543796 original size:37 final size:37
Alignment explanation
Indices: 26543743--26543886 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
26543733 GGAAATATAT
26543743 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26543780 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26543817 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26543854 TCCGGGTAAGACCCGAT-ACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
26543887 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 15 0.15
37 88 0.85
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26545209 original size:40 final size:40
Alignment explanation
Indices: 26545154--26545544 Score: 579
Period size: 40 Copynumber: 9.8 Consensus size: 40
26545144 GAGAATTGAG
*
26545154 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
26545194 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
26545234 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
26545274 AGTGATATATCCGGGCTAAGTCCC-AAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
26545313 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
26545353 AGTGATATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* **
26545393 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTTATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
26545433 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
26545473 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
**
26545513 AGTGATATATCCGTG-CTAAACCCCGAAGAGCA
1 AGTGATATATCCG-GACTAAGTCCCGAAGAGCA
26545545 ATCATGCTGG
Statistics
Matches: 319, Mismatches: 30, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 36 0.11
40 282 0.88
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26545287 original size:80 final size:80
Alignment explanation
Indices: 26545154--26545544 Score: 640
Period size: 80 Copynumber: 4.9 Consensus size: 80
26545144 GAGAATTGAG
* * *
26545154 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
26545219 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
26545234 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCC-
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
26545298 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
26545313 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
*
26545378 AAGAGTATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
26545393 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTTATGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
26545458 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * **
26545473 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
26545538 AAGAGCA
66 AAGAGCA
26545545 ATCATGCTGG
Statistics
Matches: 289, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
79 77 0.27
80 212 0.73
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:26549489 original size:47 final size:47
Alignment explanation
Indices: 26549435--26549722 Score: 391
Period size: 47 Copynumber: 6.1 Consensus size: 47
26549425 TTAGGATTTT
** * *
26549435 ATGTGATGAATGAGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGAGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26549482 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGAGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26549529 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGAGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26549576 ATGTGGTGAAT-ATGAACAAGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGA-GAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26549623 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGAGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
26549670 ATGTGGTGAAT-ATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGA-GAACATGCATATATGTGATAAGGCCGAATGGCCA
26549717 ATGTGA
1 ATGTGA
26549723 AATATGTATG
Statistics
Matches: 213, Mismatches: 25, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGAGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26549535 original size:22 final size:22
Alignment explanation
Indices: 26549464--26549535 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
26549454 GTATATATGA
26549464 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
26549486 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
26549511 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
26549533 GAT
1 GAT
26549536 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:26549536 original size:94 final size:94
Alignment explanation
Indices: 26549464--26549722 Score: 464
Period size: 94 Copynumber: 2.8 Consensus size: 94
26549454 GTATATATGA
* *
26549464 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
26549529 ATGTGATGAATGTGAGCATGCATATGTGT
66 ATGTGATGAATGTGAGCATGCATATGTGT
*
26549558 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACAAGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
26549623 ATGTGATGAATGTGAGCATGCATATGTGT
66 ATGTGATGAATGTGAGCATGCATATGTGT
* * *
26549652 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
26549717 ATGTGA
66 ATGTGA
26549723 AATATGTATG
Statistics
Matches: 158, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 158 1.00
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.25
Consensus pattern (94 bp):
GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAGCATGCATATGTGT
Found at i:26549603 original size:141 final size:141
Alignment explanation
Indices: 26549456--26549721 Score: 442
Period size: 141 Copynumber: 1.9 Consensus size: 141
26549446 GAGAATGTGT
26549456 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
* * * *
26549521 AATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAA
66 AATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGGTGAA
26549586 TATGAACAAGC
131 TATGAACAAGC
* * *
26549597 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
* * *
26549662 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTG
66 AATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTG
26549722 AAATATGTAT
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 115 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (141 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
AATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGGTGAA
TATGAACAAGC
Found at i:26549803 original size:141 final size:137
Alignment explanation
Indices: 26549456--26549874 Score: 430
Period size: 141 Copynumber: 3.0 Consensus size: 137
26549446 GAGAATGTGT
* * * * *
26549456 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGC--ATATGTGGTAAGGCCG
* * * * * * *
26549521 AATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAA
64 AATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGT-G-AAA
*
26549586 TATGAACAAGC
127 TATGTACAAGC
* *
26549597 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGCATATGTG-G-TAAGGCCG
*
26549662 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
64 AATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
** *
26549727 TGTATGAGAT
129 TGTACAAG-C
* * * *
26549737 ATATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATGCATATGTGGTAAAGC
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATAA-ATG--TGAG-CATGCATATGTGGTAAGGC
* * * *
26549801 CGAATGGTCAATGTGAAATATATATATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAGTG
62 CGAATGGCCAATGTG--AT-GA-ATATGA-ACATGCATATATGTGGTAAAGCCGAATGGCTAATG
26549864 TGAAATATGTA
122 TGAAATATGTA
26549875 GGCGATGTGC
Statistics
Matches: 240, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
139 17 0.07
140 33 0.14
141 124 0.52
142 5 0.02
143 12 0.05
144 39 0.16
145 6 0.03
146 4 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (137 bp):
ATATATGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGCATATGTGGTAAGGCCGAA
TGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
TACAAGC
Found at i:26549890 original size:50 final size:48
Alignment explanation
Indices: 26549692--26549874 Score: 291
Period size: 46 Copynumber: 3.8 Consensus size: 48
26549682 TGAACATGCA
26549692 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA--
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
26549738 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
26549786 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
26549836 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
26549875 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
46 46 0.37
47 1 0.01
48 33 0.26
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:26550164 original size:37 final size:37
Alignment explanation
Indices: 26550019--26550163 Score: 263
Period size: 37 Copynumber: 3.9 Consensus size: 37
26550009 GGAAATATAT
26550019 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26550056 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
26550093 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
26550130 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
26550164 TCGTCTGAGC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26568519 original size:21 final size:21
Alignment explanation
Indices: 26568457--26568518 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
26568447 TTGCTAGCAG
26568457 ATAT-AAATTAAAATAATAAA
1 ATATCAAATTAAAATAATAAA
*
26568477 ATCTCAAATTAAAATAATAAA
1 ATATCAAATTAAAATAATAAA
*
26568498 ATATCAAATT-AAAGAATAAA
1 ATATCAAATTAAAATAATAAA
26568518 A
1 A
26568519 ACTTAAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 13 0.34
21 25 0.66
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (21 bp):
ATATCAAATTAAAATAATAAA
Found at i:26570117 original size:28 final size:25
Alignment explanation
Indices: 26570085--26570142 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 25
26570075 TCTAGAAACT
*
26570085 GAAAGTGATGCAACAACCAAGAAGGAAA
1 GAAAGGGATGCAACAA-CAAG-A-GAAA
* *
26570113 GAAAGGGATTCGACAACAAGAGAAA
1 GAAAGGGATGCAACAACAAGAGAAA
26570138 GAAAG
1 GAAAG
26570143 AAGCCTGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.33
26 1 0.04
27 4 0.15
28 13 0.48
ACGTcount: A:0.53, C:0.12, G:0.28, T:0.07
Consensus pattern (25 bp):
GAAAGGGATGCAACAACAAGAGAAA
Found at i:26572662 original size:42 final size:44
Alignment explanation
Indices: 26572595--26572711 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
26572585 ATCAACTATT
* ** *
26572595 GATGCCACTGTCCCAGGCAAGGTCTTACAC-TAAATCA-AA-TAC
1 GATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGT-C
*** *
26572637 GATGTTGATGTCCCATACATGGTCTTACACGTAAATCATAAGTC
1 GATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGTC
*
26572681 GATGCCAATGTCCCAAACGTGGTCTTACACG
1 GATGCCAATGTCCCAAACATGGTCTTACACG
26572712 AATACACATA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 23 0.38
43 7 0.12
44 29 0.48
45 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (44 bp):
GATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGTC
Found at i:26572693 original size:44 final size:43
Alignment explanation
Indices: 26572553--26572711 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
26572543 AGCTCGTATA
* * ** * * *
26572553 ATGCCAATGTCTCAGATGTGGTCTTACATGT-AATCAACTATTG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCAAATA-CG
* ** *
26572596 ATGCCACTGTCCCAGGCAAGGTCTTACAC-TAAATCAAATACG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCAAATACG
*** *
26572638 ATGTTGATGTCCCATACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCA-AA-TACG
*
26572682 ATGCCAATGTCCCAAACGTGGTCTTACACG
1 ATGCCAATGTCCCAAACATGGTCTTACACG
26572712 AATACACATA
Statistics
Matches: 91, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 24 0.26
43 37 0.41
44 29 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCAAATACG
Found at i:26577780 original size:40 final size:40
Alignment explanation
Indices: 26577672--26577921 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26577662 CGGGATTTAA
* * * * *
26577672 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
26577712 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26577752 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26577792 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26577832 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26577872 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26577912 CCGGATATAT
1 CCGGATATAT
26577922 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:26585887 original size:40 final size:40
Alignment explanation
Indices: 26585779--26586028 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26585769 CGGGATTTAA
* * * * *
26585779 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
26585819 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26585859 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26585899 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26585939 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26585979 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
26586019 CCGGATATAT
1 CCGGATATAT
26586029 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:26595942 original size:41 final size:41
Alignment explanation
Indices: 26595897--26596014 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
26595887 TGAAAGATAA
26595897 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
26595938 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26595968 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26596009 ATGTAG
1 ATGTAG
26596015 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:26595954 original size:71 final size:71
Alignment explanation
Indices: 26595867--26596028 Score: 324
Period size: 71 Copynumber: 2.3 Consensus size: 71
26595857 GATGTATCCT
26595867 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
26595932 GACACC
66 GACACC
26595938 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
26596003 GACACC
66 GACACC
26596009 ATGTAGACAAGAGAGCTACG
1 ATGTAGACAAGAGAGCTACG
26596029 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
GACACC
Found at i:26604968 original size:39 final size:39
Alignment explanation
Indices: 26604925--26605001 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
26604915 AATGTATAAG
26604925 GCCTCTATAAATTTTTACACTAATTTGGGATTTGCTTAT
1 GCCTCTATAAATTTTTACACTAATTTGGGATTTGCTTAT
26604964 GCCTCTATAAATTTTTACACTAATTTGGGATTTGCTTA
1 GCCTCTATAAATTTTTACACTAATTTGGGATTTGCTTA
26605002 CTTAAATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (39 bp):
GCCTCTATAAATTTTTACACTAATTTGGGATTTGCTTAT
Found at i:26610537 original size:12 final size:12
Alignment explanation
Indices: 26610520--26610544 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26610510 CGACTTAAAG
26610520 CATTAGCAACAA
1 CATTAGCAACAA
26610532 CATTAGCAACAA
1 CATTAGCAACAA
26610544 C
1 C
26610545 TCTAACCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (12 bp):
CATTAGCAACAA
Found at i:26615784 original size:46 final size:46
Alignment explanation
Indices: 26615621--26615798 Score: 135
Period size: 46 Copynumber: 3.8 Consensus size: 46
26615611 TGTAACCCGC
* * * * *
26615621 CCATAAGCGAACTCGAACTCAAGTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * * *
26615667 CCATAAGTGAACTCGGACTCAACTGAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
26615713 ACATTTCA-CAAACTCGAACTAAACTCAATGAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
26615760 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACG
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACG
26615799 CCCAAATATT
Statistics
Matches: 95, Mismatches: 32, Indels: 10
0.69 0.23 0.07
Matches are distributed among these distances:
45 2 0.02
46 61 0.64
47 30 0.32
48 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:26618396 original size:45 final size:43
Alignment explanation
Indices: 26618336--26618423 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 43
26618326 ATCTCATCTC
*
26618336 AATGCCACTGTCCCAGACATGGTCTTACACGTAAATACATATATT
1 AATGCCACTGTCCCAGACATGGTCCTACACG-AAA-ACATATATT
26618381 AATGCCAAC-GTCCCAGACATGGTCCTACACGAAAACATATATT
1 AATGCC-ACTGTCCCAGACATGGTCCTACACGAAAACATATATT
26618424 GGAATCCTAC
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 9 0.22
44 3 0.07
45 27 0.66
46 2 0.05
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
AATGCCACTGTCCCAGACATGGTCCTACACGAAAACATATATT
Found at i:26622444 original size:50 final size:50
Alignment explanation
Indices: 26622385--26622507 Score: 147
Period size: 50 Copynumber: 2.5 Consensus size: 50
26622375 GCTTCGATCT
* * *
26622385 TGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTATAATACTCAG
1 TGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAATACTAAG
* * * * *
26622435 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAG
1 TGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAATACTAAG
* * *
26622485 TGCATGCTACTATGCGTACCAGA
1 TGCAGGCTACTACGTGTACCAGA
26622508 GAGCTTCGGT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (50 bp):
TGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAATACTAAG
Found at i:26623368 original size:178 final size:180
Alignment explanation
Indices: 26623038--26623372 Score: 503
Period size: 178 Copynumber: 1.9 Consensus size: 180
26623028 CCGAGATCTT
* *
26623038 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTGTCAGACAGTGAAACAGGGGTAT
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
* * * *
26623103 CTTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
66 CTTTAATGAATAAACTATACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATAT
* * *
26623168 GTGTGAGTCTAATTTTTGGGAAAATTAGTGGTTTTTAATTTGGAGTCTCG
131 ATGTGAGTATAATTTCTGGGAAAATTAGTGGTTTTTAATTTGGAGTCTCG
* * * ** *
26623218 TACCATGAGATAAAT-ATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAATAGGGGTAA
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
*
26623282 CTTTAATGAATAAACTATAC-AATTGGCTACACCAAAAATTATAAAAATTTGATGGTAAAAATAT
66 CTTTAATGAATAAACTATACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATAT
*
26623346 ATGTGAGTATAGTTTCTGGGAAAATTA
131 ATGTGAGTATAATTTCTGGGAAAATTA
26623373 ACGTATCTTA
Statistics
Matches: 138, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
178 63 0.46
179 60 0.43
180 15 0.11
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (180 bp):
TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
CTTTAATGAATAAACTATACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATAT
ATGTGAGTATAATTTCTGGGAAAATTAGTGGTTTTTAATTTGGAGTCTCG
Found at i:26629290 original size:29 final size:29
Alignment explanation
Indices: 26629227--26629334 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
26629217 TTCACATACC
* * * *
26629227 TGTATCTGGCCCATTAAGACC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
26629255 T-TCATATGGCCCAATAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
26629284 TGTATATGGCCTATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
26629313 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
26629335 GCCACATTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 15 0.23
29 48 0.74
30 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:26629323 original size:58 final size:57
Alignment explanation
Indices: 26629224--26629334 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
26629214 AAATTCACAT
* *
26629224 ACCTGTATCTGGCCCATTAAGACCAATCATATTCATATGGCCCAATAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGACCAATCACATTCATATGGCCCAATAGGCCCAAATC
* * * * **
26629281 ACCTGTATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGACC-AATCACATTCATATGGCCCAATAGGCCCA
26629335 GCCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 20 0.44
58 25 0.56
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGACCAATCACATTCATATGGCCCAATAGGCCCAAATC
Found at i:26629583 original size:16 final size:16
Alignment explanation
Indices: 26629558--26629609 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
26629548 GTAGTCAAAC
* *
26629558 TTTTGGCTTTTCAGTA
1 TTTTGACTTTTCAGCA
26629574 TTTTGACTTTTCAGCA
1 TTTTGACTTTTCAGCA
**
26629590 TTTCAACTTTTCAGC-
1 TTTTGACTTTTCAGCA
26629605 TTTTG
1 TTTTG
26629610 TCGGTTCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 3 0.10
16 27 0.90
ACGTcount: A:0.15, C:0.17, G:0.13, T:0.54
Consensus pattern (16 bp):
TTTTGACTTTTCAGCA
Found at i:26641587 original size:40 final size:39
Alignment explanation
Indices: 26641496--26641625 Score: 169
Period size: 40 Copynumber: 3.4 Consensus size: 39
26641486 TATGTGCATA
* *
26641496 GCATTCGTTCGGGTTATTACAACCGGGTTAAGTCC----
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCGAAG
*
26641531 CCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCC-GAAG
*
26641571 GCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGT-CCGAAG
*
26641611 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
26641626 GTTACATCCG
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
35 32 0.39
40 49 0.59
41 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (39 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCGAAG
Found at i:26642185 original size:50 final size:50
Alignment explanation
Indices: 26642011--26642395 Score: 265
Period size: 50 Copynumber: 7.7 Consensus size: 50
26642001 GGGCGTTACA
* * *** *
26642011 GTAGTACTATGTGCAGGCTACTGTGTGTTTAAGATAGTTTTAGGTCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-G-GTTAGGTCACGTGT
* * * * * * * *
26642063 GTAGTACTAAGAGTAGGCAACTATGCGTACCCGATAGTTTCGATCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGTCACGTGT
* * * * * *
26642114 GTAGTACTAAATGTAGCCTACTACGTGTATCAGATGGTTAGGTCAAGTGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACGTGT
** *** * *
26642164 GTAGTACTAAGTGCAGGCTACTACATGTACC-GAATAAATAGGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATGGTTAGGTCACGTGT
* * ** * * ** * *
26642214 GTAGTACTAAGTGTAGCCTACTATGCATACCCGTTAACTTCGATCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGTCACGTGT
* * * *
26642265 GTAGTACTAAGTGCAGGCTACTACGTGTACCATATGGATAAGTCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACGTGT
* * * * * **
26642315 GTAGTATTGAGTGCAGGGTACTATGTGTACCAGATTGATAGGT--CGCAT
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACGTGT
26642363 GT-GTACTAAGTGCAGGCTACTATGTGTACCAGA
1 GTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
26642396 GAGCTTCGGT
Statistics
Matches: 256, Mismatches: 74, Indels: 11
0.75 0.22 0.03
Matches are distributed among these distances:
47 28 0.11
48 5 0.02
49 1 0.00
50 119 0.46
51 76 0.30
52 27 0.11
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
GTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACGTGT
Found at i:26642287 original size:151 final size:151
Alignment explanation
Indices: 26642051--26642367 Score: 402
Period size: 151 Copynumber: 2.1 Consensus size: 151
26642041 AAGATAGTTT
* * * * **
26642051 TAGGTCACGTGTGTAGTACTAAGAGTAGGCAACTATGCGTACCCGATAGTTTCGATCACGTGTGT
1 TAGGTCGCATGTGTAGTACTAAGAGTAGCCAACTATGCATACCCGATAACTTCGATCACGTGTGT
* * * *
26642116 AGTACTAAATGTAGCCTACTACGTGTATCAGATGGTTAGGTCAAGTGTGTAGTACTAAGTGCAGG
66 AGTACTAAATGCAGCCTACTACGTGTACCAGATGGATAAGTCAAGTGTGTAGTACTAAGTGCAGG
26642181 CTACTACATGTACC-GAATAAA
131 CTACTACATGTACCAG-ATAAA
* * *
26642202 TAGGTCGCATGTGTAGTACTAAGTGTAGCCTACTATGCATACCCGTTAACTTCGATCACGTGTGT
1 TAGGTCGCATGTGTAGTACTAAGAGTAGCCAACTATGCATACCCGATAACTTCGATCACGTGTGT
* * * * * *
26642267 AGTACTAAGTGCAGGCTACTACGTGTACCATATGGATAAGTCACGTGTGTAGTATTGAGTGCAGG
66 AGTACTAAATGCAGCCTACTACGTGTACCAGATGGATAAGTCAAGTGTGTAGTACTAAGTGCAGG
* ** **
26642332 GTACTATGTGTACCAGATTGA
131 CTACTACATGTACCAGATAAA
26642353 TAGGTCGCATGTGTA
1 TAGGTCGCATGTGTA
26642368 CTAAGTGCAG
Statistics
Matches: 141, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
151 140 0.99
152 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (151 bp):
TAGGTCGCATGTGTAGTACTAAGAGTAGCCAACTATGCATACCCGATAACTTCGATCACGTGTGT
AGTACTAAATGCAGCCTACTACGTGTACCAGATGGATAAGTCAAGTGTGTAGTACTAAGTGCAGG
CTACTACATGTACCAGATAAA
Found at i:26643330 original size:180 final size:179
Alignment explanation
Indices: 26642950--26643304 Score: 543
Period size: 180 Copynumber: 2.0 Consensus size: 179
26642940 TCTTATATCT
* *
26642950 GTACCATGGGATAAATATTTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAGGGGTA
* * *
26643015 TCTTTAATGAATAAATTGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAATA
66 ACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAATA
* * * *
26643080 TATGTGAGTTTAGTTTCTGGGAAAATTAATGGTTCTTAATTTGGAGTCTC
131 TA-GTGAGTATAGTTTCTGAGAAAATTAATAGATCTTAATTTGGAGTCTC
* * * *
26643130 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGAT-GGAACTGTTGGATAGTGAAATAGGGGT
1 GTACCATGAGATAAATAATTTTTAGTGAAGA-AAGATCGGAACTGTCGGACAGTGAAACAGGGGT
*
26643194 AACTTTAATGAATAAAATGTACTAATTGGCTGAACCAAAAATTTTGAAAATTTGATGGTAAGAAT
65 AACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAAT
*
26643259 ATA-TGAGTATAGTTTTTGAGAAAATTAATAGATCTTAATTTGGAGT
130 ATAGTGAGTATAGTTTCTGAGAAAATTAATAGATCTTAATTTGGAGT
26643305 TCCGTAACTC
Statistics
Matches: 159, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
178 38 0.24
180 117 0.74
181 4 0.03
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAGGGGTA
ACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAATA
TAGTGAGTATAGTTTCTGAGAAAATTAATAGATCTTAATTTGGAGTCTC
Found at i:26645674 original size:43 final size:42
Alignment explanation
Indices: 26645620--26645789 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 42
26645610 ATATCGTACA
* *
26645620 ATGCCAATGTCCCATACATGGTCTTACATGCCATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * * *
26645663 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
* *
26645704 ATGCCAATGTCCCAGACATTGTCTTACATGTAATCCCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * *
26645747 ATTCCAACGTCCCAGACATGGTCTTACATGAGAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGA-ATCACATATCG
26645790 GAAATCCTAT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 28 0.26
42 15 0.14
43 64 0.60
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
Found at i:26645761 original size:84 final size:84
Alignment explanation
Indices: 26645620--26645774 Score: 231
Period size: 84 Copynumber: 1.8 Consensus size: 84
26645610 ATATCGTACA
* *
26645620 ATGCCAATGTCCCATACATGGTCTTACATGCCATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAGGGT
26645685 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* * * * *
26645704 ATGCCAATGTCCCAGACATTGTCTTACATGTAATCCCATATCGATTCCAAC-GTCCCAGACATGG
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCC-ACTGTCCCAGACAGGG
26645768 TCTTACA
65 TCTTACA
26645775 TGAGAACACA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
84 61 0.97
85 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAGGGT
CTTACACGAATCAAATACG
Found at i:26646387 original size:15 final size:15
Alignment explanation
Indices: 26646364--26646393 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26646354 TCAAAAATTC
26646364 TAATACAAAACATAT
1 TAATACAAAACATAT
*
26646379 TAATCCAAAACATAT
1 TAATACAAAACATAT
26646394 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:26648167 original size:43 final size:42
Alignment explanation
Indices: 26648054--26648205 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 42
26648044 ACAATGCCAG
* * *
26648054 CATCCCAGACGTGGTCTTACATGT-AATCAAATATAGATGCAA
1 CATCCCAGACGTGGTCTTACATGTAAATCAAGTA-CGATCCAA
* *
26648096 CTGTCCCAGACAG-GGTCTTACACG-AAATCAAGTACGATACCAA
1 C-ATCCCAGAC-GTGGTCTTACATGTAAATCAAGTACGAT-CCAA
**
26648139 CATCCCAGACGTGGTCTTACATGTAAATCATAAGT-CGATGTGAA
1 CATCCCAGACGTGGTCTTACATGTAAATC--AAGTACGAT-CCAA
* *
26648183 CGTCCCGGACGTGGTCTTACATG
1 CATCCCAGACGTGGTCTTACATG
26648206 ATAACACATA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 22 0.24
43 35 0.39
44 28 0.31
45 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (42 bp):
CATCCCAGACGTGGTCTTACATGTAAATCAAGTACGATCCAA
Found at i:26654095 original size:50 final size:49
Alignment explanation
Indices: 26653930--26654136 Score: 243
Period size: 49 Copynumber: 4.2 Consensus size: 49
26653920 CTGGTACGCA
* * *
26653930 TAGTAGCCTGCACTTAGTACTACACATGCGACCAGTTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * * *
26653979 TAGTATCCTACACTTAGTACTACACACATGACCAATTATCCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
26654028 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
26654078 TAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
26654129 TAGTAGCC
1 TAGTAGCC
26654137 CGCTCTTATT
Statistics
Matches: 132, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.55
50 43 0.33
51 17 0.13
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:26666590 original size:37 final size:38
Alignment explanation
Indices: 26666502--26666590 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 38
26666492 CAAAATGCCC
*
26666502 CTCCTTATTTTCCAAGTTTTGTAATTTCATGCAAATTG
1 CTCCTTATTTTCCAAGTTTTGCAATTTCATGCAAATTG
* *** * *
26666540 CTTC-TAGAATCCAAGTTTTGCAATTT-ATTCAATTTG
1 CTCCTTATTTTCCAAGTTTTGCAATTTCATGCAAATTG
*
26666576 GTCCTTATTTTCCAA
1 CTCCTTATTTTCCAA
26666591 TTGAACACCT
Statistics
Matches: 38, Mismatches: 12, Indels: 3
0.72 0.23 0.06
Matches are distributed among these distances:
36 10 0.26
37 25 0.66
38 3 0.08
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (38 bp):
CTCCTTATTTTCCAAGTTTTGCAATTTCATGCAAATTG
Found at i:26681350 original size:16 final size:16
Alignment explanation
Indices: 26681329--26681359 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26681319 ATGACCTCGA
26681329 TAAACCTCATTTCATG
1 TAAACCTCATTTCATG
26681345 TAAACCTCATTTCAT
1 TAAACCTCATTTCAT
26681360 CGGTCTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAACCTCATTTCATG
Found at i:26685760 original size:3 final size:3
Alignment explanation
Indices: 26685747--26685785 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
26685737 TCTAGGCCTC
*
26685747 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26685786 TTTCAACGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:26690884 original size:39 final size:39
Alignment explanation
Indices: 26690830--26690992 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
26690820 TGTGAATGAA
26690830 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26690869 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
26690908 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
26690947 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26690987 TGTGCG
1 TGTGCG
26690993 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26698844 original size:39 final size:39
Alignment explanation
Indices: 26698790--26698952 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
26698780 TGTGAATGAA
26698790 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26698829 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
26698868 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
26698907 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26698947 TGTGCG
1 TGTGCG
26698953 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26705144 original size:41 final size:40
Alignment explanation
Indices: 26705087--26705168 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 40
26705077 TTAGTGCCAT
26705087 CTCAAATAGCCAAAGCTAC-CTCAGTATCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACTCT-A-TATCGCACACTTAGTGC
* * *
26705128 CTCATATAGCCAAAGCTATTCTATTTCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACTCTATATCGCACACTTAGTGC
26705168 C
1 C
26705169 GAATTCCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 17 0.46
41 18 0.49
42 2 0.05
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.27
Consensus pattern (40 bp):
CTCAAATAGCCAAAGCTACTCTATATCGCACACTTAGTGC
Found at i:26705165 original size:40 final size:41
Alignment explanation
Indices: 26705087--26705168 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 41
26705077 TTAGTGCCAT
26705087 CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
* * *
26705128 CTCATATAGCCAAAGCTA-TTCTA-TTTCGCACACTTAGTGC
1 CTCAAATAGCCAAAGCTACCTC-AGTATCGCACACTTAGTGC
26705168 C
1 C
26705169 GAATTCCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 19 0.51
41 18 0.49
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.27
Consensus pattern (41 bp):
CTCAAATAGCCAAAGCTACCTCAGTATCGCACACTTAGTGC
Found at i:26709629 original size:30 final size:29
Alignment explanation
Indices: 26709565--26709654 Score: 83
Period size: 30 Copynumber: 2.9 Consensus size: 29
26709555 TATAAAAACT
*
26709565 AAAATTAAAATAATAATAAAGGAAAATAAAATA
1 AAAATTAAAATAA-AA-AAA--TAAATAAAATA
* *
26709598 AAAATT-ACATAAATAAGATAAATAAAGATA
1 AAAATTAAAATAAA-AAAATAAATAAA-ATA
*
26709628 AAAGTTAAAATAAAAAAATAAATAAAA
1 AAAATTAAAATAAAAAAATAAATAAAA
26709655 AGTTTTTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
29 8 0.17
30 19 0.40
31 9 0.19
32 6 0.12
33 6 0.12
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (29 bp):
AAAATTAAAATAAAAAAATAAATAAAATA
Found at i:26714811 original size:42 final size:42
Alignment explanation
Indices: 26714752--26714837 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
26714742 TTTGATATGT
26714752 ATACTTTTAGCCATGCGAATATGGCTTAAATGTTAAGTTTGG
1 ATACTTTTAGCCATGCGAATATGGCTTAAATGTTAAGTTTGG
26714794 ATACTTTTAGCCATGCGAATATGGCTTAAATGTTAAGTTTGG
1 ATACTTTTAGCCATGCGAATATGGCTTAAATGTTAAGTTTGG
26714836 AT
1 AT
26714838 TTGGTGTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (42 bp):
ATACTTTTAGCCATGCGAATATGGCTTAAATGTTAAGTTTGG
Found at i:26730407 original size:40 final size:40
Alignment explanation
Indices: 26730324--26730609 Score: 323
Period size: 40 Copynumber: 7.5 Consensus size: 40
26730314 AAGCCAAGTA
* * * * * *
26730324 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
26730363 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26730403 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26730443 CCTTTGGGACTTAG-CC-----------CTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26730471 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26730511 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26730551 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26730591 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26730610 TTATCATCCA
Statistics
Matches: 214, Mismatches: 18, Indels: 29
0.82 0.07 0.11
Matches are distributed among these distances:
28 24 0.11
29 2 0.01
39 15 0.07
40 173 0.81
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26730500 original size:68 final size:68
Alignment explanation
Indices: 26730391--26730607 Score: 256
Period size: 68 Copynumber: 3.0 Consensus size: 68
26730381 GATATAGTAA
* *
26730391 CTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
26730456 GCC
66 GCC
*
26730459 CTCGCACAAATGCCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
26730524 GCCC
66 G-CC
* * *
26730528 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGC
1 -----------CTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
26730592 CTTCGGGACTTAGCC
54 CTTCGGGACTTAGCC
26730607 C
1 C
26730608 GGTTATCATC
Statistics
Matches: 129, Mismatches: 7, Indels: 26
0.80 0.04 0.16
Matches are distributed among these distances:
68 64 0.50
69 2 0.02
79 3 0.02
80 60 0.47
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (68 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
GCC
Found at i:26730552 original size:108 final size:108
Alignment explanation
Indices: 26730363--26730567 Score: 365
Period size: 108 Copynumber: 1.9 Consensus size: 108
26730353 CACTCGAATA
* *
26730363 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
26730428 TAACTCGCACAAATGCCTTTGGGACTTAGCCCTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAGCCCTCGCACAAATG
* *
26730471 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
26730536 TAACTCGCACAAATGCCTTCGGGACTTAGCCC
66 TAACTCGCACAAATGCCTTCGGGACTTAGCCC
26730568 GGAACTAGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 92 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (108 bp):
CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAGCCCTCGCACAAATG
Found at i:26730606 original size:148 final size:147
Alignment explanation
Indices: 26730324--26730607 Score: 410
Period size: 148 Copynumber: 1.9 Consensus size: 147
26730314 AAGCCAAGTA
* * * *
26730324 CCTTCGGGATTTAACCGGATATAGCTACTCACTCGAATACCTTCGGGACATAGCCTGGATATAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCACACAAATACCTTCGGGACATAGCCCGGATATAGT
* * *
26730389 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACT
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACT
26730454 TAGCCCTCGCACAAATG
131 TAGCCCTCGCACAAATG
* * * *
26730471 CCTTCGGGACTTATCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTA-ACCGGATATAGCT-ACTCACACAAATACCTTCGGGACATAGCCCGGATATA
* *
26730535 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGG
26730599 ACTTAGCCC
128 ACTTAGCCC
26730608 GGTTATCATC
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
147 14 0.12
148 107 0.88
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (147 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCACACAAATACCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACT
TAGCCCTCGCACAAATG
Found at i:26732713 original size:25 final size:25
Alignment explanation
Indices: 26732685--26732732 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26732675 CCTTATAATC
* *
26732685 TGAAAATGACCTTTTTACCCCTAAG
1 TGAAAATGACCATTATACCCCTAAG
26732710 TGAAAATGACCATTATACCCCTA
1 TGAAAATGACCATTATACCCCTA
26732733 GGGTTATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAAG
Found at i:26732790 original size:10 final size:10
Alignment explanation
Indices: 26732775--26732813 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
26732765 TGCTTTTGTG
26732775 CATGATATGC
1 CATGATATGC
26732785 CATGATATGC
1 CATGATATGC
26732795 ACATGATATGC
1 -CATGATATGC
26732806 CATGATAT
1 CATGATAT
26732814 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:26739394 original size:49 final size:50
Alignment explanation
Indices: 26739314--26739546 Score: 317
Period size: 49 Copynumber: 4.7 Consensus size: 50
26739304 ATCTATTGTG
*
26739314 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
26739364 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
26739414 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
**
26739464 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
26739514 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
26739547 TGCGTACTAG
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 73 0.46
50 47 0.30
51 39 0.25
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:26739511 original size:101 final size:98
Alignment explanation
Indices: 26739317--26739546 Score: 325
Period size: 100 Copynumber: 2.3 Consensus size: 98
26739307 TATTGTGAGG
* *
26739317 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
26739382 AAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGTGTACCCGATAA-TT-GA
* ** **
26739417 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
26739482 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGTGTACCCGATAATTGA
* *
26739516 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
26739547 TGCGTACTAG
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
99 30 0.26
100 45 0.38
101 42 0.36
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCCGATAATTGA
Found at i:26749975 original size:40 final size:40
Alignment explanation
Indices: 26749920--26750142 Score: 342
Period size: 40 Copynumber: 5.6 Consensus size: 40
26749910 AGCATTTGAA
26749920 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
26749960 TTATATCCGGGCTAAGACTCGAAGGTATTTGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
26750000 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
26750040 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * * * * * *
26750080 CTATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
26750120 TTATATCC-GGCTAA-ATCCCGAAG
1 TTATATCCGGGCTAAGA-CCCGAAG
26750143 AAACTTGGGT
Statistics
Matches: 168, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 155 0.92
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:26751688 original size:16 final size:17
Alignment explanation
Indices: 26751667--26751705 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
26751657 CATGTAACGC
26751667 CCCAAAAAT-CTCGAAA-
1 CCCAAAAATCCT-GAAAT
26751683 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCTGAAAT
26751700 CCCAAA
1 CCCAAA
26751706 CTTTTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCCTGAAAT
Found at i:26753188 original size:29 final size:29
Alignment explanation
Indices: 26753156--26753283 Score: 161
Period size: 29 Copynumber: 4.4 Consensus size: 29
26753146 GGGAGTAACG
* *
26753156 GGCCATAT-AATGGTGATTTAGGCCTAATA
1 GGCCATATGAAT-GTGAATTGGGCCTAATA
* *
26753185 GGCCATATGAATATGAATTGGGCCTAATG
1 GGCCATATGAATGTGAATTGGGCCTAATA
*
26753214 GGCCATATGAATGTGAATTGGGCCTGATA
1 GGCCATATGAATGTGAATTGGGCCTAATA
* *
26753243 GGCCATATGAATGTGAATTGAGCTTAAT-
1 GGCCATATGAATGTGAATTGGGCCTAATA
*
26753271 GGGCATATGAATG
1 GGCCATATGAATG
26753284 AGATGGGCCA
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 12 0.14
29 72 0.83
30 3 0.03
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.29
Consensus pattern (29 bp):
GGCCATATGAATGTGAATTGGGCCTAATA
Found at i:26753238 original size:58 final size:58
Alignment explanation
Indices: 26753155--26753283 Score: 181
Period size: 58 Copynumber: 2.2 Consensus size: 58
26753145 TGGGAGTAAC
* *
26753155 GGGCCATAT-AATGGTGATTTAGGCCTAATAGGCCATATGAATATGAATTGGGCCTAAT
1 GGGCCATATGAAT-GTGAATTAGGCCTAATAGGCCATATGAATATGAATTGAGCCTAAT
* * * *
26753213 GGGCCATATGAATGTGAATTGGGCCTGATAGGCCATATGAATGTGAATTGAGCTTAAT
1 GGGCCATATGAATGTGAATTAGGCCTAATAGGCCATATGAATATGAATTGAGCCTAAT
26753271 GGG-CATATGAATG
1 GGGCCATATGAATG
26753284 AGATGGGCCA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 10 0.16
58 51 0.80
59 3 0.05
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (58 bp):
GGGCCATATGAATGTGAATTAGGCCTAATAGGCCATATGAATATGAATTGAGCCTAAT
Found at i:26757623 original size:28 final size:29
Alignment explanation
Indices: 26757592--26757738 Score: 86
Period size: 29 Copynumber: 5.1 Consensus size: 29
26757582 GTGAGCATGA
26757592 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
** * ** * ** *
26757620 ATATAAAGGAAAATTTGTGTGTGAGCATG-A
1 ATATAAAGG-TGATTTGGGCCT-AACGGGCC
*
26757650 ATAT-AAGGTGATTTGAGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
* **
26757678 ATATAAAGGTGATTTAGGCCTAATAGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
* * * * *
26757707 ATATCAATG-GAATTGGGCCTGATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
26757735 ATAT
1 ATAT
26757739 GAATGAGATG
Statistics
Matches: 86, Mismatches: 28, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
27 3 0.03
28 34 0.40
29 35 0.41
30 11 0.13
31 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:26757639 original size:58 final size:58
Alignment explanation
Indices: 26757570--26757686 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
26757560 CTATGTGATA
*
26757570 GAAAATTTGTGTGTGAGCATGAATATAAGGTGATTTGGGCCTAACGGGCCATATAAAG
1 GAAAATTTGTGTGTGAGCATGAATATAAGGTGATTTGAGCCTAACGGGCCATATAAAG
26757628 GAAAATTTGTGTGTGAGCATGAATATAAGGTGATTTGAGCCTAACGGGCCATATAAAG
1 GAAAATTTGTGTGTGAGCATGAATATAAGGTGATTTGAGCCTAACGGGCCATATAAAG
26757686 G
1 G
26757687 TGATTTAGGC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (58 bp):
GAAAATTTGTGTGTGAGCATGAATATAAGGTGATTTGAGCCTAACGGGCCATATAAAG
Found at i:26759297 original size:29 final size:25
Alignment explanation
Indices: 26759237--26759286 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26759227 TCCCATATAC
26759237 TCAATTCATTTTCACAAATTACTTA
1 TCAATTCATTTTCACAAATTACTTA
26759262 TCAATTCATTTTCACAAATTACTTA
1 TCAATTCATTTTCACAAATTACTTA
26759287 CTATCTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (25 bp):
TCAATTCATTTTCACAAATTACTTA
Found at i:26761407 original size:73 final size:74
Alignment explanation
Indices: 26761315--26761455 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 74
26761305 CCTTTTCATA
* * **
26761315 TTATAAAACATATACAAGTAAACACATTAGATATACCCTTTATTCAACATCTATTCATAT-AACA
1 TTATAAAACATATACAAGTAAACACATTAGATATACCATTCATTCAACAAATATTCATATAAACA
26761379 TTTCACATG
66 TTTCACATG
* *
26761388 TTATAAAACATATGCAAGTAAACATATTAGATATACCATTCATTCAACAAATATTCATATAAACA
1 TTATAAAACATATACAAGTAAACACATTAGATATACCATTCATTCAACAAATATTCATATAAACA
26761453 TTT
66 TTT
26761456 TATATAAACA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 54 0.89
74 7 0.11
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (74 bp):
TTATAAAACATATACAAGTAAACACATTAGATATACCATTCATTCAACAAATATTCATATAAACA
TTTCACATG
Found at i:26761462 original size:13 final size:13
Alignment explanation
Indices: 26761444--26761473 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26761434 ACAAATATTC
*
26761444 ATATAAACATTTT
1 ATATAAACACTTT
26761457 ATATAAACACTTT
1 ATATAAACACTTT
26761470 ATAT
1 ATAT
26761474 TATTATTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATAAACACTTT
Found at i:26761869 original size:45 final size:44
Alignment explanation
Indices: 26761820--26762131 Score: 315
Period size: 45 Copynumber: 6.9 Consensus size: 44
26761810 CACTTCCGAT
* *
26761820 ATGATGCCATAGTGTCTTTCAACTATGGTTTTATTTTTTTGCGAC
1 ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTATTTT-CGAC
* *
26761865 ATGATGCCATAGTTTCTTTTAACTATGGTCTTATTTATTTTCGAC
1 ATGATGCCATAGTGTCTTTCAACTATGGTCTTA-TTATTTTCGAC
* **
26761910 AAGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTTC
1 ATGATGCCATAGTGTCTTTCAACTATGGTCTTATT-ATTTTCGAC
* **
26761955 ATGTTGCCATAGTGTCCTTT-AACTATGGTCTTATTCATTTTCGGT
1 ATGATGCCATAGTGT-CTTTCAACTATGGTCTTATT-ATTTTCGAC
* * ** * *
26762000 AT-AGTACCATAATGTCTTTCAACTATTTTCTTATTCATTTCCGAT
1 ATGA-TGCCATAGTGTCTTTCAACTATGGTCTTATT-ATTTTCGAC
* * *
26762045 ATAATGCCATAGTGTCTTTCAACTATGGTCTTATTCACTTTCGAT
1 ATGATGCCATAGTGTCTTTCAACTATGGTCTTATT-ATTTTCGAC
* * *
26762090 ATAATGCCATATTGT-TTGTCAACTATGTTCTTATTCATTTTC
1 ATGATGCCATAGTGTCTT-TCAACTATGGTCTTATT-ATTTTC
26762132 CAAGCCAATG
Statistics
Matches: 230, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
44 8 0.03
45 211 0.92
46 11 0.05
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.46
Consensus pattern (44 bp):
ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTATTTTCGAC
Found at i:26761930 original size:90 final size:90
Alignment explanation
Indices: 26761816--26762131 Score: 365
Period size: 90 Copynumber: 3.5 Consensus size: 90
26761806 TACACACTTC
* *
26761816 CGATAT-GATGCCATAGTGTCTTTCAACTATGGTT-TTATTTTTTTGCGACATGATGCCATAGTT
1 CGATATAGATGCCATAGTGTCTTTCAACTAT-GTTCTTATTATTTT-CGACATGATGCCATAGTG
*
26761879 TCTTTTAACTATGGTCTTATTTATTTT
64 TCTTTTAACTATGGTCTTATTCATTTT
* * ** *
26761906 CGACA-AGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTTCATGTTGCCATAGTGT
1 CGATATAGATGCCATAGTGTCTTTCAACTATGTTCTTATT-ATTTTCGACATGATGCCATAGTGT
*
26761970 CCTTTAACTATGGTCTTATTCATTTT
65 CTTTTAACTATGGTCTTATTCATTTT
* * * * * * *
26761996 CGGTATAG-TACCATAATGTCTTTCAACTATTTTCTTATTCATTTCCGATATAATGCCATAGTGT
1 CGATATAGATGCCATAGTGTCTTTCAACTATGTTCTTATT-ATTTTCGACATGATGCCATAGTGT
* *
26762060 CTTTCAACTATGGTCTTATTCACTTT
65 CTTTTAACTATGGTCTTATTCATTTT
*
26762086 CGATATA-ATGCCATATTGT-TTGTCAACTATGTTCTTATTCATTTTC
1 CGATATAGATGCCATAGTGTCTT-TCAACTATGTTCTTATT-ATTTTC
26762132 CAAGCCAATG
Statistics
Matches: 191, Mismatches: 29, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
89 4 0.02
90 181 0.95
91 6 0.03
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.46
Consensus pattern (90 bp):
CGATATAGATGCCATAGTGTCTTTCAACTATGTTCTTATTATTTTCGACATGATGCCATAGTGTC
TTTTAACTATGGTCTTATTCATTTT
Found at i:26762098 original size:135 final size:135
Alignment explanation
Indices: 26761810--26762131 Score: 368
Period size: 135 Copynumber: 2.4 Consensus size: 135
26761800 CGATCTTACA
* * * *
26761810 CACTTCCGATATGATGCCATAGTGTCTTTCAACTATGGTTTTATT-TTTTTGCGACATGATGCCA
1 CACTTTCGATATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTT-CGACATGATACCA
* * * * *
26761874 TAGTTTCTTTTAACTATGGTCTTATTTATTTTCGACAAGATGCCATAGTGTCTTTCAACTATGGT
65 TAATGTCTTTCAACTATGGTCTTATTCATTTCCGACAAGATGCCATAGTGTCTTTCAACTATGGT
26761939 CTTATT
130 CTTATT
* * * **
26761945 CATTTTC-TTCATGTTGCCATAGTGTCCTTT-AACTATGGTCTTATTCATTTTCGGTAT-AGTAC
1 CACTTTCGAT-ATGATGCCATAGTGT-CTTTCAACTATGGTCTTATTCATTTTCGACATGA-TAC
** *
26762007 CATAATGTCTTTCAACTATTTTCTTATTCATTTCCGATATA-ATGCCATAGTGTCTTTCAACTAT
63 CATAATGTCTTTCAACTATGGTCTTATTCATTTCCGACA-AGATGCCATAGTGTCTTTCAACTAT
26762071 GGTCTTATT
127 GGTCTTATT
* * *
26762080 CACTTTCGATATAATGCCATATTGT-TTGTCAACTATGTTCTTATTCATTTTC
1 CACTTTCGATATGATGCCATAGTGTCTT-TCAACTATGGTCTTATTCATTTTC
26762132 CAAGCCAATG
Statistics
Matches: 156, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
133 2 0.01
134 3 0.02
135 141 0.90
136 10 0.06
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (135 bp):
CACTTTCGATATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGACATGATACCAT
AATGTCTTTCAACTATGGTCTTATTCATTTCCGACAAGATGCCATAGTGTCTTTCAACTATGGTC
TTATT
Found at i:26763710 original size:30 final size:29
Alignment explanation
Indices: 26763616--26763717 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
26763606 TATAGTGAAT
* * *
26763616 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
26763645 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
26763673 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
26763703 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
26763718 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:26771580 original size:30 final size:29
Alignment explanation
Indices: 26771486--26771587 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
26771476 TATAGTGAAT
* * *
26771486 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
26771515 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
26771543 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
26771573 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
26771588 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:26774687 original size:46 final size:46
Alignment explanation
Indices: 26774623--26774793 Score: 245
Period size: 46 Copynumber: 3.6 Consensus size: 46
26774613 TGTGAGGTCA
26774623 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGT
* * *
26774669 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGA-AATGTGAT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAAT-TGGT
*
26774715 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGT
1 CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGT
26774764 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 --CATGTGTAGTACTAAGTGCAGGCTACTA
26774794 TGCGTACCAG
Statistics
Matches: 111, Mismatches: 7, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
45 3 0.03
46 41 0.37
48 32 0.29
49 31 0.28
50 2 0.02
51 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (46 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGT
Found at i:26774799 original size:97 final size:94
Alignment explanation
Indices: 26774620--26774801 Score: 319
Period size: 94 Copynumber: 1.9 Consensus size: 94
26774610 TATTGTGAGG
26774620 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCATGTGTAGTACTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCATGTGTAGTACTAAG
26774685 TGCAGGCTACTATGCGTACCGAAATGTGA
66 TGCAGGCTACTATGCGTACCGAAATGTGA
* *
26774714 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGT--CATGTGTAGTACT
26774779 AAGTGCAGGCTACTATGCGTACC
63 AAGTGCAGGCTACTATGCGTACC
26774802 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
94 38 0.46
95 9 0.11
97 36 0.43
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (94 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCATGTGTAGTACTAAG
TGCAGGCTACTATGCGTACCGAAATGTGA
Found at i:26777812 original size:15 final size:15
Alignment explanation
Indices: 26777792--26777856 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
26777782 GTATCTTGGG
26777792 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
26777807 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
26777822 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
26777837 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
26777851 TTTCTT
1 TTTCTT
26777857 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26777822 original size:30 final size:31
Alignment explanation
Indices: 26777788--26777856 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
26777778 TATCGTATCT
26777788 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
26777818 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
26777848 -GGTTTTCTT
1 TGGGTTTCTT
26777857 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:26779588 original size:49 final size:49
Alignment explanation
Indices: 26779516--26779701 Score: 207
Period size: 49 Copynumber: 3.8 Consensus size: 49
26779506 TGAGGTCACG
*
26779516 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
* * * *
26779565 TGTGTTGTACTAAGTGCAGGCTACTATGCATACTC-GAAAATT-GTAAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAATTGGT--TGCA
* * * * *
26779614 CGTATGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
*
26779665 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
26779702 CAACTTCGGC
Statistics
Matches: 111, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
48 2 0.02
49 70 0.63
50 3 0.03
51 34 0.31
52 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
Found at i:26779684 original size:100 final size:100
Alignment explanation
Indices: 26779511--26779693 Score: 321
Period size: 100 Copynumber: 1.8 Consensus size: 100
26779501 TATTGTGAGG
* * * *
26779511 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCATGTGTTGTACT
1 TCACGTATGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
26779576 AAGTGCAGGCTACTATGCATACTCGAAAATTGTAA
66 AAGTGCAGGCTACTATGCATACTCGAAAATTGTAA
*
26779611 TCACGTATGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTATGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
26779676 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
26779694 GTACCAGACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (100 bp):
TCACGTATGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACTCGAAAATTGTAA
Found at i:26782163 original size:49 final size:49
Alignment explanation
Indices: 26782091--26782276 Score: 205
Period size: 49 Copynumber: 3.8 Consensus size: 49
26782081 TGAGGTCACG
*
26782091 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
* * * * *
26782140 TGTGTTGTACTAAGTGCAGGCTACTATGCATACCCGAAAATT-GTAAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGT--TGCA
* * * * * *
26782189 CGTATGTAATACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
*
26782240 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
26782277 CAACTTCGGC
Statistics
Matches: 109, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
48 2 0.02
49 70 0.64
50 1 0.01
51 34 0.31
52 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTTGCA
Found at i:26782259 original size:100 final size:100
Alignment explanation
Indices: 26782086--26782273 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
26782076 TATTGTGAGG
* * * * *
26782086 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCATGTGTTGTACT
1 TCACGTATGTAATACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
26782151 AAGTGCAGGCTACTATGCATACCCGAAAATTGTAA
66 AAGTGCAGGCTACTATGCATACCCGAAAATTGTAA
*
26782186 TCACGTATGTAATACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTATGTAATACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
26782251 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCATACC
26782274 AGACAACTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (100 bp):
TCACGTATGTAATACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAATTGTAA
Found at i:26784737 original size:49 final size:49
Alignment explanation
Indices: 26784665--26784939 Score: 352
Period size: 49 Copynumber: 5.5 Consensus size: 49
26784655 TGAGGTCACG
* *
26784665 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
* * * * * *
26784714 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
*
26784765 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
* * * * * *
26784814 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
* *
26784865 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
*
26784914 TGTGCAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26784940 TGCGTACCAT
Statistics
Matches: 191, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
49 106 0.55
50 4 0.02
51 81 0.42
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
Found at i:26784833 original size:100 final size:100
Alignment explanation
Indices: 26784660--26784947 Score: 522
Period size: 100 Copynumber: 2.9 Consensus size: 100
26784650 TATTGTGAGG
*
26784660 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
26784725 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
26784760 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
26784825 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
* * * *
26784860 TCACTTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGCAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
26784925 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
26784948 ATACAACTTC
Statistics
Matches: 182, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 182 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
Found at i:26786612 original size:39 final size:39
Alignment explanation
Indices: 26786569--26786682 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
26786559 CCAGACATAT
* *
26786569 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
26786608 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
26786647 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
26786683 AACATCACTG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:26786614 original size:78 final size:77
Alignment explanation
Indices: 26786521--26786683 Score: 197
Period size: 78 Copynumber: 2.1 Consensus size: 77
26786511 AAATTTAAAC
* * * *
26786521 CCGGTATAATACCAGCTCGA-AGCCTGTGGGA-CTTTAGCCCAGACATATTTCCAGCACGTAGCC
1 CCGGTATAATACCAGCAC-ATAGCCTGT-GGACCTTAAGCCCAGACATAATTCCAGCACATAGCC
*
26786584 TGCGGACCTTAAGT
64 TGCGGACCCTAAGT
* * * *
26786598 CCGGTTATAATTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAGCACATAGCCTGTGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCT
26786663 GCGGACCCTAAGT
65 GCGGACCCTAAGT
26786676 CCGG-ATAA
1 CCGGTATAA
26786684 ACATCACTGA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
76 4 0.05
77 8 0.11
78 62 0.84
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (77 bp):
CCGGTATAATACCAGCACATAGCCTGTGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTG
CGGACCCTAAGT
Found at i:26792595 original size:79 final size:80
Alignment explanation
Indices: 26792464--26792611 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 80
26792454 TATTCGGATG
* * *
26792464 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAG-CCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAATATCGGGCTAAGTCCCAAAGGCA
26792528 TTTGTGCAAGTTACT
66 TTTGTGCAAGTTACT
* *
26792543 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAATCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAT-ATCGGGCTAAGTCCCAAAGGC
26792607 ATTTG
65 ATTTG
26792612 AGCGAGTAGC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.03
79 47 0.76
80 13 0.21
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAATATCGGGCTAAGTCCCAAAGGCA
TTTGTGCAAGTTACT
Found at i:26792617 original size:40 final size:40
Alignment explanation
Indices: 26792464--26792643 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 40
26792454 TATTCGGATG
* * *
26792464 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
26792504 A-ATTTCGGGCTAAG-CCCAAAGGCATTTGTGCAAGTTACT
1 ATA-ATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26792543 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
26792583 ATAATCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
26792623 AT-ATCCGGCTAA-ACCCGAAGG
1 ATAATCGGGCTAAGTCCCGAAGG
26792644 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 8 0.07
39 44 0.36
40 69 0.57
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26792633 original size:79 final size:79
Alignment explanation
Indices: 26792464--26792643 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 79
26792454 TATTCGGATG
* * *
26792464 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCAAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAATATCGGGCTAAGCCCAAAGGCAT
*
26792529 TTGTGCAAGTTACT
66 TTGAGCAAGTTACT
* *
26792543 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAATCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAT-ATCGGGCTAAG-CCCAAAGGC
*
26792607 ATTTGAGCGAG-TAGCT
64 ATTTGAGCAAGTTA-CT
* *
26792623 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
26792644 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
78 10 0.11
79 55 0.62
80 24 0.27
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAATATCGGGCTAAGCCCAAAGGCAT
TTGAGCAAGTTACT
Found at i:26800453 original size:40 final size:40
Alignment explanation
Indices: 26800345--26800564 Score: 286
Period size: 40 Copynumber: 5.6 Consensus size: 40
26800335 TATTCGGATG
* * *
26800345 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
** * *
26800385 A-ATTCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
26800423 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
26800463 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
26800503 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
26800543 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
26800565 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 24 0.15
39 35 0.22
40 103 0.64
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:26801997 original size:49 final size:49
Alignment explanation
Indices: 26801913--26802094 Score: 222
Period size: 49 Copynumber: 3.7 Consensus size: 49
26801903 GGGTGTTACA
***
26801913 TACTAAGTGCAGGCTACTACGTGTATTGGATAATTGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAG
* * * * *
26801962 TACTAAGTACAGGCTACTATC-TGTACCCGAAAATTGTGATCACGTGTGTAG
1 TACTAAGTGCAGGCTACTA-CGTGTACCAGATAATTG-G-TCGCATGTGTAG
*
26802013 TACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAG
* * *
26802062 TACTAAGTTCAGGCTACTATGCGTACCAGATAA
1 TACTAAGTGCAGGCTACTACGTGTACCAGATAA
26802095 CTTCGACTAC
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 68 0.61
50 4 0.04
51 40 0.36
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAG
Found at i:26808199 original size:29 final size:29
Alignment explanation
Indices: 26808166--26808297 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
26808156 GTGACGAGAT
*
26808166 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
26808195 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
26808224 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
26808253 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
26808282 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
26808298 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:26810088 original size:80 final size:80
Alignment explanation
Indices: 26810004--26810152 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
26809994 TATGGTAACC
* * * *
26810004 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
26810068 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
26810084 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
26810149 CCGG
66 CCGG
26810153 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:26810094 original size:40 final size:38
Alignment explanation
Indices: 26810045--26810152 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
26810035 ATCACGATTT
*
26810045 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
26810085 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
26810125 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
26810153 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:26818647 original size:29 final size:29
Alignment explanation
Indices: 26818614--26818745 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
26818604 GTGACGAGAT
*
26818614 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
26818643 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
26818672 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
26818701 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
26818730 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
26818746 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:26829515 original size:27 final size:26
Alignment explanation
Indices: 26829467--26829520 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
26829457 TAACACAAGT
*
26829467 TAGTCATTTACACACGAGGGGCAAAA
1 TAGTCATTTACACACGAAGGGCAAAA
* *
26829493 TAGTCATTTAACACCCTAAGGGCAAAA
1 TAGTCATTT-ACACACGAAGGGCAAAA
26829520 T
1 T
26829521 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (26 bp):
TAGTCATTTACACACGAAGGGCAAAA
Found at i:26829528 original size:27 final size:27
Alignment explanation
Indices: 26829485--26829541 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26829475 TACACACGAG
*
26829485 GGGCAAAATAGTCATTTAACACCC-TAA
1 GGGCAAAATAGTAATTTAAC-CCCATAA
* *
26829512 GGGCAAAATGGTAATTTTACCCCATAA
1 GGGCAAAATAGTAATTTAACCCCATAA
26829539 GGG
1 GGG
26829542 TATCTCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACCCCATAA
Found at i:26829699 original size:22 final size:22
Alignment explanation
Indices: 26829674--26829715 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26829664 TACCCTATAG
26829674 GGGTATTTCGGTATTCCTACAA
1 GGGTATTTCGGTATTCCTACAA
* *
26829696 GGGTATTTTGGTATTTCTAC
1 GGGTATTTCGGTATTCCTAC
26829716 CCTACAAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (22 bp):
GGGTATTTCGGTATTCCTACAA
Found at i:26829743 original size:103 final size:104
Alignment explanation
Indices: 26829586--26829798 Score: 322
Period size: 103 Copynumber: 2.1 Consensus size: 104
26829576 GTATTTCTAC
* * * **
26829586 CCTATAAGGGTATTTCGGTAATTCTATCGTACAAGCTTATTTCGGTAATTCTACCCTACAGGGGT
1 CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGCGCATTTCGGTAATTCTACCCTACAGGGGT
*
26829651 ATTTCAATAATTCTACCCTATAGGGGTATTTCGGT-ATT
66 ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATT
* * *
26829689 CCTACAAGGGTATTTTGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTACAGGGGT
1 CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGCGCATTTCGGTAATTCTACCCTACAGGGGT
*
26829754 ATTTCAATAATTCTACCCTACAGGGGTATTTTGGTAATT
66 ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATT
26829793 -CTACAA
1 CCTACAA
26829799 CTTATCCACT
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 96 0.97
104 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (104 bp):
CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGCGCATTTCGGTAATTCTACCCTACAGGGGT
ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATT
Found at i:26829793 original size:27 final size:27
Alignment explanation
Indices: 26829521--26829796 Score: 294
Period size: 27 Copynumber: 10.4 Consensus size: 27
26829511 AGGGCAAAAT
* * * *
26829521 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
26829548 GGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
26829575 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * **
26829602 GGTAATTCTATCGTACAAGCTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
26829629 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
26829656 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
26829683 GGT-A-T-T--CCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
26829705 GGTATTTCTACCCTACAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
26829732 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
26829759 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
26829786 GGTAATTCTAC
1 GGTAATTCTAC
26829797 AACTTATCCA
Statistics
Matches: 206, Mismatches: 36, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
22 16 0.08
24 2 0.01
25 2 0.01
26 4 0.02
27 179 0.87
28 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:26833629 original size:18 final size:17
Alignment explanation
Indices: 26833606--26833639 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26833596 CTCTCCTAAA
26833606 ACGATTTCGATCTTTCTC
1 ACGA-TTCGATCTTTCTC
*
26833624 ACGATTCTATCTTTCT
1 ACGATTCGATCTTTCT
26833640 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.26, G:0.09, T:0.47
Consensus pattern (17 bp):
ACGATTCGATCTTTCTC
Found at i:26846152 original size:3 final size:3
Alignment explanation
Indices: 26846139--26846172 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
26846129 AAGAGTAGGT
26846139 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26846173 AATTAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:26849983 original size:40 final size:40
Alignment explanation
Indices: 26849923--26850017 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
26849913 CGGATGTAAC
*
26849923 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
26849963 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTGTAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
26850003 AACCCGCACGAATGC
1 AACCCGCACGAATGC
26850018 TATGCACATA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:26855551 original size:24 final size:24
Alignment explanation
Indices: 26855519--26855651 Score: 196
Period size: 24 Copynumber: 5.5 Consensus size: 24
26855509 AATCTCAAAT
26855519 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
26855543 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
26855567 GCACTATGTGTGCGATTTACTACA
1 GCACTATGTGTGCGATTTACTATA
*
26855591 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
26855615 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
26855639 GCACTATGTGTGC
1 GCACTATGTGTGC
26855652 AACGTTTGGT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 94 0.95
25 5 0.05
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:26863354 original size:24 final size:24
Alignment explanation
Indices: 26863322--26863454 Score: 196
Period size: 24 Copynumber: 5.5 Consensus size: 24
26863312 AATCTCAAAT
26863322 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
26863346 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
26863370 GCACTATGTGTGCGATTTACTACA
1 GCACTATGTGTGCGATTTACTATA
*
26863394 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
26863418 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
26863442 GCACTATGTGTGC
1 GCACTATGTGTGC
26863455 AACGTTTGGT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 94 0.95
25 5 0.05
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:26867881 original size:40 final size:40
Alignment explanation
Indices: 26867819--26867913 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
26867809 CGGATGTAAC
* *
26867819 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTGCGGGACTTAACCCGGTTATAAT
*
26867859 AACCCGCACGAATGCCTGCGGGACTTAACCCGGTTGTAAT
1 AACCCGCACGAATGCCTGCGGGACTTAACCCGGTTATAAT
26867899 AACCCGCACGAATGC
1 AACCCGCACGAATGC
26867914 TATGCACATA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (40 bp):
AACCCGCACGAATGCCTGCGGGACTTAACCCGGTTATAAT
Found at i:26872530 original size:29 final size:29
Alignment explanation
Indices: 26872488--26872590 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
26872478 AGAGGTGCAT
* *
26872488 AACTTTTTCGTTGAGAGTTCGTGATGAAG
1 AACTTGTTCGTTGAGAGTTTGTGATGAAG
*
26872517 AACTTGTTCGTTGAGAGTTTGTGATGAAT
1 AACTTGTTCGTTGAGAGTTTGTGATGAAG
*
26872546 AACTTGTTCTTTGAGAGTTTGTGATGAAG
1 AACTTGTTCGTTGAGAGTTTGTGATGAAG
* * *
26872575 ATCCTGTCCGTTGAGA
1 AACTTGTTCGTTGAGA
26872591 ATTCATGGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39
Consensus pattern (29 bp):
AACTTGTTCGTTGAGAGTTTGTGATGAAG
Found at i:26875460 original size:13 final size:13
Alignment explanation
Indices: 26875442--26875468 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26875432 CATAATCATA
26875442 CTTACTTCACACT
1 CTTACTTCACACT
26875455 CTTACTTCACACT
1 CTTACTTCACACT
26875468 C
1 C
26875469 CATCAACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.37
Consensus pattern (13 bp):
CTTACTTCACACT
Found at i:26875732 original size:40 final size:40
Alignment explanation
Indices: 26875671--26875828 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
26875661 CGGAATTTAT
* ** *
26875671 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
26875711 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
26875751 CCGGATATAACCACTCGCACAAATGCCTTCGAGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
26875791 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTA
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTA
26875829 GCTCGGGTAT
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:26875771 original size:80 final size:80
Alignment explanation
Indices: 26875671--26875830 Score: 266
Period size: 80 Copynumber: 2.0 Consensus size: 80
26875661 CGGAATTTAT
* * * *
26875671 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAACCACAAGCACAAATGCCTTCGAGTCTTAACCCGGATATAACAACTCGCACAAATG
26875736 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
**
26875751 CCGGATATAACCACTCGCACAAATGCCTTCGAGTCTTAACCCGGATATAACAACTCGCACAAATG
1 CCGGATATAACCACAAGCACAAATGCCTTCGAGTCTTAACCCGGATATAACAACTCGCACAAATG
26875816 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
26875831 TCGGGTATCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (80 bp):
CCGGATATAACCACAAGCACAAATGCCTTCGAGTCTTAACCCGGATATAACAACTCGCACAAATG
CCTTCGGGTCTTAGC
Found at i:26876205 original size:20 final size:20
Alignment explanation
Indices: 26876180--26876217 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26876170 GTTTATTCAC
*
26876180 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
26876200 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
26876218 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:26877878 original size:28 final size:28
Alignment explanation
Indices: 26877846--26877912 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
26877836 GTAGATCACG
*
26877846 AAATTACCCTTAAAGAGCAAAATTACTA
1 AAATTACCCCTAAAGAGCAAAATTACTA
*
26877874 AAATTACCCCTAAAGAGCAAAATTACCA
1 AAATTACCCCTAAAGAGCAAAATTACTA
*
26877902 ATA-TACCCCTA
1 AAATTACCCCTA
26877913 GGGTTTAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 8 0.22
28 28 0.78
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.22
Consensus pattern (28 bp):
AAATTACCCCTAAAGAGCAAAATTACTA
Done.