Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 98 of 378
Found at i:26884664 original size:40 final size:40
Alignment explanation
Indices: 26884559--26884762 Score: 256
Period size: 39 Copynumber: 5.2 Consensus size: 40
26884549 TCTTCGGAAT
** *
26884559 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* * *
26884597 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
*
26884636 TTAGCCCGGATATAACCACTCGCACAAATGCC-TCAGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* *
26884675 TTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
* * * *
26884715 TTAGCTCGGATATAATCACTAGCATAAATGCCTTCGGG-C
1 TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
26884754 TTAGCCCGG
1 TTAGCCCGG
26884763 TATCATTCAA
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 23 0.16
39 61 0.43
40 58 0.41
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTCGCACAAATGCCTTCGGGTC
Found at i:26884728 original size:79 final size:76
Alignment explanation
Indices: 26884559--26884765 Score: 288
Period size: 79 Copynumber: 2.6 Consensus size: 76
26884549 TCTTCGGAAT
* * *
26884559 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGTCTTAACCCGGTATAGCAACTCGCACAAA
1 TTAGCCGGATATAACCACTAGCACAAATGCC-TCGGTCTTAACCCGGTATAACAACTCGCACAAA
26884624 TGCCTTCGGGTC
65 TGCCTTCGGGTC
*
26884636 TTAGCCCGGATATAACCACTCGCACAAATGCCTCAGGTCTTAACCCGGATATAACAACTCGCACA
1 TTAG-CCGGATATAACCACTAGCACAAATGCCTC-GGTCTTAACCCGG-TATAACAACTCGCACA
26884701 AATGCCTTCGGGTC
63 AATGCCTTCGGGTC
* * * *
26884715 TTAGCTCGGATATAATCACTAGCATAAATGCCTTCGGGCTTAGCCCGGTAT
1 TTAGC-CGGATATAACCACTAGCACAAATGCC-TCGGTCTTAACCCGGTAT
26884766 CATTCAAATG
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
77 6 0.05
78 41 0.35
79 67 0.58
80 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (76 bp):
TTAGCCGGATATAACCACTAGCACAAATGCCTCGGTCTTAACCCGGTATAACAACTCGCACAAAT
GCCTTCGGGTC
Found at i:26893829 original size:27 final size:27
Alignment explanation
Indices: 26893771--26893870 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
26893761 CATACCTGAA
* *
26893771 CCCTCATGTGATAAAATGAC-ATTTTA
1 CCCTTATGTGATAAAATGACGATTTTG
*
26893797 CCCTTATGTAATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
* * *
26893824 CCCTTATATGATAAAATGATGATATTG
1 CCCTTATGTGATAAAATGACGATTTTG
26893851 CCCTTATGTGATAAAATGAC
1 CCCTTATGTGATAAAATGAC
26893871 AAAAATACCT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
26 18 0.28
27 46 0.72
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATTTTG
Found at i:26893892 original size:27 final size:28
Alignment explanation
Indices: 26893862--26893924 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
26893852 CCTTATGTGA
*
26893862 TAAAATGA-CAAAAATACCTCCATAGGG
1 TAAAATGACCAAAAATACCCCCATAGGG
26893889 TAAAATGACCAAAAATACCCCCATAGGG
1 TAAAATGACCAAAAATACCCCCATAGGG
*
26893917 TAGAATGA
1 TAAAATGA
26893925 ACGAAATAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
27 8 0.24
28 25 0.76
ACGTcount: A:0.48, C:0.19, G:0.16, T:0.17
Consensus pattern (28 bp):
TAAAATGACCAAAAATACCCCCATAGGG
Found at i:26894345 original size:18 final size:18
Alignment explanation
Indices: 26894322--26894379 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
26894312 TCTGCTTGCA
*
26894322 TACTACAGTGATTACTGT
1 TACTACATTGATTACTGT
*
26894340 TACTACATTGATCA-TGGT
1 TACTACATTGATTACT-GT
* *
26894358 TACTGCATTGATTACTAT
1 TACTACATTGATTACTGT
26894376 TACT
1 TACT
26894380 GAAATGGGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTACATTGATTACTGT
Found at i:26894416 original size:34 final size:34
Alignment explanation
Indices: 26894370--26894449 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 34
26894360 CTGCATTGAT
* * * *
26894370 TACTATTACTGAAATGGGCTAGGGCCCAGATTAC
1 TACTGTTACTGAAATGAGCTAAGGCCCAGACTAC
* *
26894404 TACTGTTACTGAAATGAGCTAAGGCCGAGACTGC
1 TACTGTTACTGAAATGAGCTAAGGCCCAGACTAC
26894438 TACTGTTACTGA
1 TACTGTTACTGA
26894450 TATAGGCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (34 bp):
TACTGTTACTGAAATGAGCTAAGGCCCAGACTAC
Found at i:26901741 original size:30 final size:30
Alignment explanation
Indices: 26901705--26901764 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
26901695 GAAGAGTTTT
*
26901705 CCTTGATCGCATCTCCATTTACTAAGCTTC
1 CCTTGATCGCAGCTCCATTTACTAAGCTTC
26901735 CCTTGATCGCAGCTCCATTTACTAAGCTTC
1 CCTTGATCGCAGCTCCATTTACTAAGCTTC
26901765 TGAGTAAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (30 bp):
CCTTGATCGCAGCTCCATTTACTAAGCTTC
Found at i:26931772 original size:268 final size:269
Alignment explanation
Indices: 26931266--26931798 Score: 978
Period size: 268 Copynumber: 2.0 Consensus size: 269
26931256 ATCTAAAAAT
* *
26931266 GATTTTTTGTCACAGTGAAAAATTAAAATTTTTGAAAATCAAGTGAGTTTGTAATATTATAGTAA
1 GATTTTTTGTCACAGAGAAAAATTAAAATTTTTGAAAATCAAGTCAGTTTGTAATATTATAGTAA
26931331 TAAATTTTTACCCAAAAGTACATATGCTTTGTGCGAGATGGACTTAAACATTCCTGGCTTTCAAC
66 TAAATTTTTACCCAAAAGTACATATGCTTTGTGCGAGATGGACTTAAACATTCCTGGCTTTCAAC
* * *
26931396 TGAATGACTTTCTCTATTATTCTTGTATCACAAATCGCTTCGAGTCTGGGCTTGAACAATCACAA
131 TGAACGACTTTCTCTATTATTCTTGTATCACAAATCACTTCGAGTCTAGGCTTGAACAATCACAA
*
26931461 ATAAAATACAGAACCAAAAATAATTTCGTTCTTTCAATAGGAAAAAAATTCTCTCTCAATAAAAA
196 ATAAAATACAGAACCAAAAATAATTTCGTACTTTCAATAGGAAAAAAATTCTCTCTCAATAAAAA
26931526 CAAGTGGAA
261 CAAGTGGAA
*
26931535 GATTTTTTGTCACAGAG-AAAATTAAAATTTTTGAAAATCAAGTCAGTTTGTAATTTTATAGTAA
1 GATTTTTTGTCACAGAGAAAAATTAAAATTTTTGAAAATCAAGTCAGTTTGTAATATTATAGTAA
*
26931599 TAAATTTTTACCGAAAAGTACATATGCTTTGTGCGAGATGGACTTAAACATTCCTGGCTTTCAAC
66 TAAATTTTTACCCAAAAGTACATATGCTTTGTGCGAGATGGACTTAAACATTCCTGGCTTTCAAC
26931664 TGAACGACTTTCTCTATTATTCTTGTATCACAAATCACTTCGAGTCTAGGCTTGAACAATCACAA
131 TGAACGACTTTCTCTATTATTCTTGTATCACAAATCACTTCGAGTCTAGGCTTGAACAATCACAA
*
26931729 ATAAAATACAGAACCAAAAATAATTTCGTACTTTCAGTAGGAAAAAAATTCTCTCTCAATAAAAA
196 ATAAAATACAGAACCAAAAATAATTTCGTACTTTCAATAGGAAAAAAATTCTCTCTCAATAAAAA
26931794 CAAGT
261 CAAGT
26931799 AGAATTGTTA
Statistics
Matches: 255, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
268 239 0.94
269 16 0.06
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (269 bp):
GATTTTTTGTCACAGAGAAAAATTAAAATTTTTGAAAATCAAGTCAGTTTGTAATATTATAGTAA
TAAATTTTTACCCAAAAGTACATATGCTTTGTGCGAGATGGACTTAAACATTCCTGGCTTTCAAC
TGAACGACTTTCTCTATTATTCTTGTATCACAAATCACTTCGAGTCTAGGCTTGAACAATCACAA
ATAAAATACAGAACCAAAAATAATTTCGTACTTTCAATAGGAAAAAAATTCTCTCTCAATAAAAA
CAAGTGGAA
Found at i:26931843 original size:15 final size:15
Alignment explanation
Indices: 26931823--26931852 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26931813 CATAAAATAG
26931823 AATAAATTCTCACAA
1 AATAAATTCTCACAA
26931838 AATAAATTCTCACAA
1 AATAAATTCTCACAA
26931853 TTTTCAGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAAATTCTCACAA
Found at i:26932964 original size:32 final size:32
Alignment explanation
Indices: 26932928--26932993 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
26932918 CGAAACAACT
26932928 ACCATCAATCATATTGTAATTATAAAATTCAA
1 ACCATCAATCATATTGTAATTATAAAATTCAA
*
26932960 ACCATCAATCATATTGTAATTATAATATTCAA
1 ACCATCAATCATATTGTAATTATAAAATTCAA
26932992 AC
1 AC
26932994 ATACATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (32 bp):
ACCATCAATCATATTGTAATTATAAAATTCAA
Found at i:26941921 original size:6 final size:6
Alignment explanation
Indices: 26941903--26942022 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
26941893 AAGAAACATT
* * *
26941903 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
26941952 ATCAGA ATCAGT ATCAGGTA A-CAAA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
26942003 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
26942023 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 66 0.75
7 13 0.15
8 3 0.03
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:26941950 original size:31 final size:31
Alignment explanation
Indices: 26941914--26942022 Score: 155
Period size: 31 Copynumber: 3.5 Consensus size: 31
26941904 TCAGAACTAG
* * * *
26941914 AATCAGAATCAGAATCAGAATTAGGTGACAA
1 AATCAAAATCAGAATCAGTATCAGGTAACAA
*
26941945 AATCAGAATCAGAATCAGTATCAGGTAACAA
1 AATCAAAATCAGAATCAGTATCAGGTAACAA
*
26941976 AATCAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGTATCAGGTAACAA
26942007 AATCAAAAATCAGAAT
1 AATC-AAAATCAGAAT
26942023 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGTATCAGGTAACAA
Found at i:26942201 original size:27 final size:26
Alignment explanation
Indices: 26942159--26942253 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
26942149 GCTCAGTTAT
* *
26942159 CAGATATTGTGACAGAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
*
26942186 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
*
26942212 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCA-AAA
*
26942240 CAGATAATGTGGCA
1 CAGATATTGTGGCA
26942254 AGGCCACTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
26 7 0.12
27 45 0.75
28 8 0.13
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:26942441 original size:22 final size:22
Alignment explanation
Indices: 26942416--26942476 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
26942406 ATACGTTTGG
* *
26942416 CACACAGCCATAATCAGGTTGT
1 CACAAAGCCATAATCAGGTTGA
* *
26942438 CACAGAGCCAT-ATGTAGGTTGA
1 CACAAAGCCATAAT-CAGGTTGA
26942460 CACAAAGCCATAATCAG
1 CACAAAGCCATAATCAG
26942477 AAGGCTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (22 bp):
CACAAAGCCATAATCAGGTTGA
Found at i:26943170 original size:27 final size:27
Alignment explanation
Indices: 26942919--26943169 Score: 351
Period size: 27 Copynumber: 9.3 Consensus size: 27
26942909 TACCCCATAA
* *
26942919 GGTATCTCGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
26942946 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
26942973 GGTATTTTGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
26943000 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
26943027 GGTATTTCGATAATTCTACCCTACAGGG
1 GGTATTTCGGTAATTCTACCCTACA-GG
*
26943055 GGTATTTC-ATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
26943081 GGTATTCCAATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
26943108 GGTATTCCGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
26943135 GGTATTTCAGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
26943162 AGTATTTC
1 GGTATTTC
26943170 ATTAATTTTG
Statistics
Matches: 204, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 9 0.04
27 185 0.91
28 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:26943202 original size:27 final size:27
Alignment explanation
Indices: 26943172--26943324 Score: 216
Period size: 27 Copynumber: 5.7 Consensus size: 27
26943162 AGTATTTCAT
* *
26943172 TAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
*
26943199 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
26943226 TAATTCTGTCAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
26943253 TAATTCTGTAAATCGAGGGTAAAATAA
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
26943280 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAG
*
26943307 TAATTTTGTAAATCGAGG
1 TAATTCTGTAAATCGAGG
26943325 ATATTTGGGT
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAG
Found at i:26943321 original size:81 final size:81
Alignment explanation
Indices: 26943172--26943324 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 81
26943162 AGTATTTCAT
* * * * *
26943172 TAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTCA
1 TAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAA
26943237 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACGG
* *
26943253 TAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAA
26943318 ATCGAGG
66 ATCGAGG
26943325 ATATTTGGGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAACGG
Found at i:26943335 original size:27 final size:27
Alignment explanation
Indices: 26943305--26943368 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
26943295 AGGGTAAAAC
* *
26943305 GGTAATTTTGTAAATCGAGGATA-TTT
1 GGTAATTTTATAAACCGAGGATACTTT
* *
26943331 GGGTAATTTTATAAACCGGGGGTACTTT
1 -GGTAATTTTATAAACCGAGGATACTTT
26943359 GGTAATTTTA
1 GGTAATTTTA
26943369 CAATTGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (27 bp):
GGTAATTTTATAAACCGAGGATACTTT
Found at i:26946370 original size:64 final size:64
Alignment explanation
Indices: 26946289--26946472 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
26946279 AGACATTAGG
* *
26946289 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
26946353 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGATAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
26946417 TAA
62 TAA
* * * *
26946420 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
26946473 CGAACTCTAT
Statistics
Matches: 96, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 23 0.24
65 4 0.04
66 18 0.19
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26949671 original size:37 final size:37
Alignment explanation
Indices: 26949612--26949757 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
26949602 AGCTCAGACG
* *
26949612 TAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26949649 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26949686 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26949723 TAATCTCCACACGTAGTCATCGGGCCTTACCCGGA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26949758 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26949960 original size:50 final size:50
Alignment explanation
Indices: 26949906--26950091 Score: 354
Period size: 50 Copynumber: 3.7 Consensus size: 50
26949896 CATCGCCTAC
* *
26949906 ATATTTCACACTAGCCATTCGGCTCTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
26949956 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
26950006 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
26950056 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
26950092 TGCATGTTCA
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:26950137 original size:47 final size:47
Alignment explanation
Indices: 26950061--26950160 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
26950051 TATATATATT
* * *
26950061 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACAATCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
* * * *
26950108 TCACATTGGCCATTCGGCCTTATCTCATATATACACGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
26950155 TCACAT
1 TCACAT
26950161 AAAATCCTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
Found at i:26952024 original size:2 final size:2
Alignment explanation
Indices: 26952017--26952050 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26952007 TGCCGAATGC
26952017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26952051 TCATCCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26954267 original size:43 final size:43
Alignment explanation
Indices: 26954201--26954329 Score: 240
Period size: 43 Copynumber: 3.0 Consensus size: 43
26954191 TCAAATTACT
*
26954201 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
26954244 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
*
26954287 GGCACGAAACCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
26954330 AACATGATTG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.10
Consensus pattern (43 bp):
GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
Found at i:26954448 original size:40 final size:40
Alignment explanation
Indices: 26954338--26954449 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
26954328 CCAACATGAT
* * *
26954338 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26954378 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26954418 TGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
26954450 CTCAATTCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26955788 original size:37 final size:37
Alignment explanation
Indices: 26955724--26955869 Score: 240
Period size: 37 Copynumber: 3.9 Consensus size: 37
26955714 AGCTCAGACG
* *
26955724 TAATCTCCACACGAAG-CTATCGAGTCTTACCCGGACA
1 TAATCTCCACACGTAGTC-ATCGGGTCTTACCCGGACA
*
26955761 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26955798 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26955835 TAATCTCCACACGTAGTCATCGGGCCTTACCCGGA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26955870 ATATATTTCC
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
37 102 0.99
38 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26956150 original size:47 final size:47
Alignment explanation
Indices: 26956074--26956173 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
26956064 TATATATATT
* * * *
26956074 TCACATTAGCCATTCGGCTTTGCCACATATATGCATGTTCACAATCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
* * * *
26956121 TCACATTGGCCATTCGGCCTTATCTCATATATACACGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
26956168 TCACAT
1 TCACAT
26956174 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
Found at i:26965706 original size:16 final size:16
Alignment explanation
Indices: 26965664--26965706 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
26965654 GTAGATTGAC
*
26965664 AAAAGCCAAAATGCCA
1 AAAAGCCGAAATGCCA
**
26965680 AAAAGTTGAAATGCCA
1 AAAAGCCGAAATGCCA
26965696 AAAAGCCGAAA
1 AAAAGCCGAAA
26965707 GTTTGACTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.19, G:0.16, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:26969281 original size:40 final size:40
Alignment explanation
Indices: 26969204--26969379 Score: 241
Period size: 40 Copynumber: 4.4 Consensus size: 40
26969194 AAACCAAGTA
* *
26969204 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
26969243 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26969283 CCTCCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26969323 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
26969363 CCTTTGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
26969380 AGTTATCATC
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26971930 original size:40 final size:39
Alignment explanation
Indices: 26971770--26971932 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26971760 TGTGTATGAA
*
26971770 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26971809 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26971848 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26971887 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26971927 TGTGCG
1 TGTGCG
26971933 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26971948 original size:40 final size:39
Alignment explanation
Indices: 26971770--26971963 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
26971760 TGTGTATGAA
* *
26971770 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26971809 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26971848 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26971887 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26971927 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26971964 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26981407 original size:40 final size:39
Alignment explanation
Indices: 26981247--26981409 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26981237 TGTGTATGAA
*
26981247 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26981286 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26981325 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26981364 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26981404 TGTGCG
1 TGTGCG
26981410 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26981425 original size:40 final size:39
Alignment explanation
Indices: 26981247--26981440 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
26981237 TGTGTATGAA
* *
26981247 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26981286 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26981325 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26981364 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26981404 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26981441 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26989316 original size:40 final size:39
Alignment explanation
Indices: 26989156--26989318 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
26989146 TGTGTATGAA
*
26989156 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
26989195 TGTGTGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26989234 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26989273 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26989313 TGTGCG
1 TGTGCG
26989319 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26989334 original size:40 final size:40
Alignment explanation
Indices: 26989173--26989354 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
26989163 ATTGTGATAT
* * *** *
26989173 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
26989212 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
26989251 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
26989290 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
26989330 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26989355 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 80 0.64
40 45 0.36
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:27007159 original size:13 final size:13
Alignment explanation
Indices: 27007143--27007175 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27007133 TTTGATTAAA
*
27007143 TTAGTTAATTAGT
1 TTAGATAATTAGT
27007156 TTAGATAATTAGT
1 TTAGATAATTAGT
27007169 TTA-ATAA
1 TTAGATAA
27007176 ATGAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:27010587 original size:46 final size:46
Alignment explanation
Indices: 27010486--27010587 Score: 116
Period size: 46 Copynumber: 2.2 Consensus size: 46
27010476 AGACGAGGGG
* *
27010486 TAGTGTAAGACACGTCTGGGACATGCATCAGCTTCGAGACATAAGC
1 TAGTGTAAGACACGTCCGGGACATGCATCAGCTACGAGACATAAGC
* * * * * *
27010532 CAGTCTAAGACATGTCCGGGACATGCATCGGCTACGAGATGAT-AGT
1 TAGTGTAAGACACGTCCGGGACATGCATCAGCTACGAGA-CATAAGC
27010578 TAGTGTAAGA
1 TAGTGTAAGA
27010588 TTATGACTGG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
46 43 0.96
47 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
TAGTGTAAGACACGTCCGGGACATGCATCAGCTACGAGACATAAGC
Found at i:27014355 original size:50 final size:51
Alignment explanation
Indices: 27014280--27014406 Score: 175
Period size: 50 Copynumber: 2.5 Consensus size: 51
27014270 CCATGGCAAC
* * * *
27014280 AAGTGATAAATGATAGTTTCGGCTACATTTATCTGATCAAGGACAAGTGA-
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAG
*
27014330 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGAG
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAG
* * *
27014381 AAGTGAAAAGTGGTTGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
27014407 CTGATTAGTG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAG
Found at i:27014420 original size:31 final size:31
Alignment explanation
Indices: 27014382--27014685 Score: 441
Period size: 31 Copynumber: 9.8 Consensus size: 31
27014372 ACAAATGAGA
* *
27014382 AGTGAAAAGTGGTTGCTTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
27014413 AGTGAAAAATGGTAGC-TCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
27014444 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
27014475 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
27014506 AATGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
27014537 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
27014568 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
27014599 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
27014630 AATGAAAAATGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
27014661 AGTGAATAGTGGTGGCTTAGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
27014686 AAGTGACAAG
Statistics
Matches: 247, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
30 4 0.02
31 239 0.97
32 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:27014862 original size:49 final size:46
Alignment explanation
Indices: 27014714--27014923 Score: 189
Period size: 42 Copynumber: 4.6 Consensus size: 46
27014704 GATTTCCGTA
* * * * * * *
27014714 TAAGACCATATCTGGGATATGGTATCGGTCTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATC-GTGTGATATGTGATTAC-GTG
* * * * *
27014761 TAAGACCATATCTAGGATATGGCATCAGTGAGATATGTAATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATC-GTGTGATATGTGATTACGTG
27014807 TAAGACCATAGCTGGGCTATGGCATCGAGATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC--G-TGTGATATGTGATTACGTG
* * *
27014856 TAAGACCATAGCTGGGCTATGGCATC----GATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGTGTGATATGTGATTACGTG
27014898 TAAGACCATAGCTGGGCTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
27014924 ATTATGTGAA
Statistics
Matches: 142, Mismatches: 17, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
42 39 0.27
46 25 0.18
47 35 0.25
48 13 0.09
49 30 0.21
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TAAGACCATAGCTGGGCTATGGCATCGTGTGATATGTGATTACGTG
Found at i:27014960 original size:42 final size:42
Alignment explanation
Indices: 27014853--27014950 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
27014843 ATGTGATTAC
*
27014853 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
*
27014895 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
27014937 GTGTAAGACCATAG
1 GTGTAAGACCATAG
27014951 TTGAACTATG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:27017959 original size:13 final size:13
Alignment explanation
Indices: 27017941--27017965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27017931 ACAAACGATA
27017941 AAATTTTCACACG
1 AAATTTTCACACG
27017954 AAATTTTCACAC
1 AAATTTTCACAC
27017966 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:27023575 original size:38 final size:38
Alignment explanation
Indices: 27023524--27023597 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
27023514 TCCAGGCTTA
27023524 AAATCCCGCAGGCTTCGTACTGGTAATATAACCGGGTC
1 AAATCCCGCAGGCTTCGTACTGGTAATATAACCGGGTC
* *
27023562 AAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG
1 AAATCCCGCAGGCTTCGTACTGGTAATATAACCGGG
27023598 GATTTTCGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (38 bp):
AAATCCCGCAGGCTTCGTACTGGTAATATAACCGGGTC
Found at i:27023641 original size:65 final size:65
Alignment explanation
Indices: 27023537--27023662 Score: 207
Period size: 65 Copynumber: 1.9 Consensus size: 65
27023527 TCCCGCAGGC
27023537 TTCGTACTGGTAATATAACCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGGATT
1 TTCGTACTGGTAATATAACCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGGATT
* * * * *
27023602 TTCGTGCTGGTAATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
1 TTCGTACTGGTAATATAACCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG
27023663 TTAAATCCCG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (65 bp):
TTCGTACTGGTAATATAACCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGGATT
Found at i:27023657 original size:38 final size:38
Alignment explanation
Indices: 27023602--27023700 Score: 153
Period size: 38 Copynumber: 2.6 Consensus size: 38
27023592 TCCGGGGATT
* *
27023602 TTCGTGCTGGTAATATATCTGGGTTAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
27023640 TTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
* * *
27023678 CTAGTGCTGGTATTATATTCGGG
1 TTCGTGCTGGTATTATATCCGGG
27023701 CCTTTGAGCC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.33
Consensus pattern (38 bp):
TTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
Found at i:27023793 original size:45 final size:45
Alignment explanation
Indices: 27023693--27023802 Score: 140
Period size: 46 Copynumber: 2.5 Consensus size: 45
27023683 GCTGGTATTA
*
27023693 TATTCGGGCCTTT-GAGCCTAGCAGGCTATTATGCCGGTGAGACAT
1 TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGT-AGACAT
*
27023738 TATTCAGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGT-GA-AT
1 TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTAGACAT
27023781 TGATATCGGGCC--TCGAGCCTAG
1 T-AT-TCGGGCCTTTCGAGCCTAG
27023803 TAGGAGAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
43 13 0.22
44 4 0.07
45 18 0.31
46 24 0.41
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTAGACAT
Found at i:27024901 original size:43 final size:44
Alignment explanation
Indices: 27024835--27025007 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 44
27024825 AGCTCATACA
* *
27024835 ATGCCAGC-GTCCCAGA-AGTGGTCTTACATGTAATCAAATATCG
1 ATGCCA-CTGTCCCAGATAGTGGTCTTACACGAAATCAAATATCG
*
27024878 ATGCCACTGTCCCAGATAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCACTGTCCCAGATAGTGGTCTTACACGAAATCAAATATCG
* * * *
27024920 ATGTCGA-TGTCCTAGACA-TGGTCTTACACGTAAATCATAA-GTCG
1 ATG-CCACTGTCCCAGATAGTGGTCTTACACG-AAATCA-AATATCG
* *
27024964 ATGCCAATGTCCCAGAT-GTGGTCTTACACGAAATCACATATCG
1 ATGCCACTGTCCCAGATAGTGGTCTTACACGAAATCAAATATCG
27025007 A
1 A
27025008 AAATCCTATG
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 26 0.24
43 54 0.50
44 29 0.27
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (44 bp):
ATGCCACTGTCCCAGATAGTGGTCTTACACGAAATCAAATATCG
Found at i:27028556 original size:93 final size:93
Alignment explanation
Indices: 27028450--27028621 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
27028440 GCCCATAAGT
* * *
27028450 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27028515 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
27028543 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27028608 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
27028622 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:27028617 original size:46 final size:46
Alignment explanation
Indices: 27028442--27028617 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
27028432 TGTAACCCGC
* * * *
27028442 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
*
27028488 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTAG---CAT
* * *
27028538 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
27028581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27028618 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
Found at i:27028636 original size:46 final size:45
Alignment explanation
Indices: 27028493--27028636 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
27028483 TGCATCCATA
* *
27028493 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
27028541 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
27028586 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
27028632 AGTGA
1 AGTGA
27028637 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:27031115 original size:35 final size:35
Alignment explanation
Indices: 27031069--27031138 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
27031059 AAGCCCACAT
*
27031069 ATTTTATTTATTTCACATTTTCGTCCTTCAAAACC
1 ATTTTATTTATTTCACATTTCCGTCCTTCAAAACC
27031104 ATTTTATTTATTTCACATTTCCGTCCTTCAAAACC
1 ATTTTATTTATTTCACATTTCCGTCCTTCAAAACC
27031139 TCATTTTTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (35 bp):
ATTTTATTTATTTCACATTTCCGTCCTTCAAAACC
Found at i:27036322 original size:47 final size:47
Alignment explanation
Indices: 27036251--27036622 Score: 485
Period size: 47 Copynumber: 7.7 Consensus size: 47
27036241 CCCTTCGGGA
* * * * *
27036251 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
27036298 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
27036345 C-TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
27036391 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
27036438 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGG------C
*
27036491 ATATACTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 -----CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
27036543 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
27036592 CTTATCTCATACATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
27036623 GCATAAAATC
Statistics
Matches: 294, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 43 0.15
47 161 0.55
49 44 0.15
52 1 0.00
53 1 0.00
58 44 0.15
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:27036412 original size:93 final size:94
Alignment explanation
Indices: 27036251--27036622 Score: 485
Period size: 93 Copynumber: 3.8 Consensus size: 94
27036241 CCCTTCGGGA
* * * * * * *
27036251 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
* *
27036316 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
27036345 C-TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
27036409 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
27036438 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATACTTATCA
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTCGG------C-----CTTATCA
27036503 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27036543 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATACATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
27036608 ACATTCACATTCATC
64 ACTTTCACATTCATC
27036623 GCATAAAATC
Statistics
Matches: 246, Mismatches: 18, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
93 83 0.34
94 42 0.17
96 28 0.11
100 1 0.00
101 1 0.00
105 65 0.26
107 26 0.11
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:27036506 original size:58 final size:54
Alignment explanation
Indices: 27036438--27036597 Score: 222
Period size: 58 Copynumber: 3.0 Consensus size: 54
27036428 GCCATTAGGC
*
27036438 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATC----A
*
27036496 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCA
*
27036550 C--AT---ATATACACACTTTCACATTCATCACATCGGCCATTCGGCCTTATC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATC
27036598 TCATACATAC
Statistics
Matches: 98, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
49 43 0.44
52 2 0.02
54 2 0.02
58 51 0.52
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (54 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCA
Found at i:27036508 original size:105 final size:106
Alignment explanation
Indices: 27036391--27036597 Score: 389
Period size: 105 Copynumber: 2.0 Consensus size: 106
27036381 GCCATTAGGC
27036391 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
*
27036455 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
66 CTTTCACATTCATCACATCGGCCATTCGGCCTTATCATATA
27036496 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-AC
27036561 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATC
65 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATC
27036598 TCATACATAC
Statistics
Matches: 99, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
105 61 0.62
107 38 0.38
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (106 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
CTTTCACATTCATCACATCGGCCATTCGGCCTTATCATATA
Found at i:27036535 original size:152 final size:153
Alignment explanation
Indices: 27036346--27036622 Score: 493
Period size: 154 Copynumber: 1.8 Consensus size: 153
27036336 CCATTCGGCC
27036346 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACACT
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACT
* *
27036410 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATCACATTG
27036475 GCCATTCGGCCTTATCATATACT
131 GCCATTCGGCCTTATCATATACT
*
27036498 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACAC
* *
27036563 TTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATACATACACATTCACATTCATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATC
27036623 GCATAAAATC
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
152 58 0.49
154 60 0.51
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (153 bp):
TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATCACATTG
GCCATTCGGCCTTATCATATACT
Found at i:27036647 original size:152 final size:152
Alignment explanation
Indices: 27036346--27036647 Score: 419
Period size: 152 Copynumber: 2.0 Consensus size: 152
27036336 CCATTCGGCC
27036346 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
* * *
27036411 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATCACATTGA
** * *** * **
27036476 CCATTCGGCCTTATCATATACT
131 AAATCCGAAATCAAAATATACT
*
27036498 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACAC
* * *
27036563 TTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATACATACACATTCACATTCATCGCA-T
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATCACATT
*
27036627 -AAAATCCTAAATCAAAATATA
129 GAAAATCCGAAATCAAAATATA
27036648 AATTTTCATG
Statistics
Matches: 131, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
152 68 0.52
153 1 0.01
154 62 0.47
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (152 bp):
TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACATTCACATTCATCACATTGA
AAATCCGAAATCAAAATATACT
Found at i:27039971 original size:47 final size:47
Alignment explanation
Indices: 27039900--27040354 Score: 732
Period size: 47 Copynumber: 9.7 Consensus size: 47
27039890 CCCTTCGGGA
* * * * * *
27039900 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
27039947 CCTATCACATATATACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27039994 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27040041 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27040088 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27040135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27040182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27040229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27040275 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27040324 CTTATCTCATACATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
27040355 GCATAAAATC
Statistics
Matches: 385, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 14 0.04
47 328 0.85
48 31 0.08
49 12 0.03
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27039978 original size:25 final size:25
Alignment explanation
Indices: 27039950--27040169 Score: 80
Period size: 25 Copynumber: 9.3 Consensus size: 25
27039940 ACTCGGCCCT
*
27039950 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
* * *
27039975 ATCACAT-TA-GC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
27039997 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
*** *
27040022 ATCAC--ATCGGC-CATT-AGGCCTT-
1 ATCACATATATACACATTCA--CATTC
*
27040044 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
*** *
27040069 ATCAC--ATCGGC-CATT-AGGCCTT-
1 ATCACATATATACACATTCA--CATTC
*
27040091 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
27040116 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
27040138 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
27040163 ATCACAT
1 ATCACAT
27040170 CGGCCATTAG
Statistics
Matches: 133, Mismatches: 38, Indels: 48
0.61 0.17 0.22
Matches are distributed among these distances:
21 2 0.02
22 38 0.29
23 23 0.17
24 23 0.17
25 45 0.34
26 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:27046216 original size:6 final size:7
Alignment explanation
Indices: 27046199--27046227 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
27046189 ACCTAATAAA
27046199 AATGTCC
1 AATGTCC
27046206 AATGT-C
1 AATGTCC
27046212 AATGTCC
1 AATGTCC
27046219 AATGTCC
1 AATGTCC
27046226 AA
1 AA
27046228 AGTCAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (7 bp):
AATGTCC
Found at i:27046217 original size:13 final size:13
Alignment explanation
Indices: 27046199--27046224 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27046189 ACCTAATAAA
27046199 AATGTCCAATGTC
1 AATGTCCAATGTC
27046212 AATGTCCAATGTC
1 AATGTCCAATGTC
27046225 CAAAGTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
AATGTCCAATGTC
Found at i:27046606 original size:20 final size:21
Alignment explanation
Indices: 27046583--27046633 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
27046573 GATAAATTGG
*
27046583 CAGTAATGTAGG-CAAGCTAC
1 CAGTAATGTAGGTCAAGCCAC
27046603 CAGTAATGT-GGTCAAGCCAC
1 CAGTAATGTAGGTCAAGCCAC
* *
27046623 TAGTGATGTAG
1 CAGTAATGTAG
27046634 ATAAACTTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.08
20 23 0.88
21 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (21 bp):
CAGTAATGTAGGTCAAGCCAC
Found at i:27049708 original size:31 final size:31
Alignment explanation
Indices: 27049673--27049736 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
27049663 CCTTTTCATG
*
27049673 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCAAATTCCATAACACTGGGCCGAAGCCT
* **
27049704 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTCCATAACACTGGGCCGAAGCCT
27049735 TT
1 TT
27049737 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTCAAATTCCATAACACTGGGCCGAAGCCT
Found at i:27049979 original size:24 final size:24
Alignment explanation
Indices: 27049928--27050070 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
27049918 GCTTTATCAT
*
27049928 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
27049953 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
27049977 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
27050000 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
27050024 ATAACTGGGCCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
27050048 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
27050071 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 74 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:27050007 original size:47 final size:48
Alignment explanation
Indices: 27049928--27050069 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
27049918 GCTTTATCAT
* *
27049928 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
27049977 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
27050024 ATAACTGGGCCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
27050070 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.50
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:27050028 original size:71 final size:72
Alignment explanation
Indices: 27049927--27050070 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
27049917 TGCTTTATCA
* *
27049927 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGCCAAAAGCCCTTTCAATAACTGGGGCATAA
27049992 GCCCTTT
66 GCCCTTT
* * **
27049999 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGCCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGCCAAAAGCCCTTTCAATAACTGGGGCATA
27050062 AGCCCTTT
65 AGCCCTTT
27050070 T
1 T
27050071 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGCCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:27050145 original size:20 final size:20
Alignment explanation
Indices: 27050120--27050180 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
27050110 TTATGATTAC
27050120 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
27050140 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
27050160 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
27050180 A
1 A
27050181 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:27051512 original size:27 final size:27
Alignment explanation
Indices: 27051412--27051495 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
27051402 GGGCATATTC
* *
27051412 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
27051439 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
27051466 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
27051493 GTC
1 GTC
27051496 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:27051587 original size:27 final size:27
Alignment explanation
Indices: 27051557--27051608 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
27051547 GTAAATCTAC
27051557 AAACCAAAAGTATTTC-AGTAATTTTGT
1 AAACCAAAAGTATTTCTA-TAATTTTGT
**
27051584 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAAGTATTTCTATAATTTT
27051609 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (27 bp):
AAACCAAAAGTATTTCTATAATTTTGT
Found at i:27051705 original size:54 final size:54
Alignment explanation
Indices: 27051647--27051786 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
27051637 TGTAAATCAG
*
27051647 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAA
* * *
27051701 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTAACAAACCAA
* ** *
27051755 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
27051787 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAA
Found at i:27051785 original size:27 final size:27
Alignment explanation
Indices: 27051566--27051840 Score: 169
Period size: 27 Copynumber: 10.1 Consensus size: 27
27051556 CAAACCAAAA
* * * *
27051566 GTATTTCAGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTATAAATCAAGG
*
27051593 GTATTTCTA-TAATTTTTAGAAAGTCAAGG
1 GTATTT-TAGTAA-TTTTATAAA-TCAAGG
* * *
27051622 GTATTTCT-GTAACTTTGTAAATCAGGG
1 GTATTT-TAGTAATTTTATAAATCAAGG
* * **
27051649 GTATTTTGGTAATTTTACAAATTGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
** * * **
27051676 GTATTTCGGTAATTTAACAAGCCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* * *
27051703 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTAGTAATTTTATAAATC-AAGG
* * *
27051730 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* *
27051757 GTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
*** * *
27051784 GTAAAATAGTAATTCTGTAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
*** *
27051811 GTAAAATAGTAATTCTATAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
27051838 GTA
1 GTA
27051841 AAACAGTAAT
Statistics
Matches: 204, Mismatches: 37, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.01
27 172 0.84
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAATCAAGG
Found at i:27051813 original size:81 final size:81
Alignment explanation
Indices: 27051738--27051967 Score: 198
Period size: 81 Copynumber: 2.8 Consensus size: 81
27051728 GGGTATTTTG
* **** ** *
27051738 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTA
27051803 AATCAAGGGTAAAATA
66 AATCAAGGGTAAAATA
* * *
27051819 GTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
27051884 AGTCGAA-GGTAAAA-C
66 AATC-AAGGGTAAAATA
* ** * * ** * *
27051899 GATAATTATGTAAATCAGGGGTAAAATGGTAATT-ATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTCTACAAACCAAGGGTAAAACAGTAATTCA-GTAAATCGA-GGGTAAAACAGTAATTCT
27051962 GTAAAT
63 GTAAAT
27051968 TGAGGGTACT
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 3 0.02
81 120 0.96
82 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAATA
Found at i:27051974 original size:27 final size:27
Alignment explanation
Indices: 27051765--27051975 Score: 228
Period size: 27 Copynumber: 7.8 Consensus size: 27
27051755 GGGTATTTTA
* **
27051765 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
27051792 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
27051819 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
27051846 GTAATTCAGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
27051873 GTAATTCTGTAAGTCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
27051900 ATAATTATGTAAATC-AGGGGTAAAATG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
27051927 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
27051954 GTAATTCTGTAAATTGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
27051976 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 159 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:27052002 original size:27 final size:27
Alignment explanation
Indices: 27051972--27052070 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
27051962 GTAAATTGAG
*
27051972 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAA
* *
27051999 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAA
* * *
27052026 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCGGTAATTTTACAAATCGAA
27052052 GGGTATTTCGGTAATTTTA
1 -GGTATTTCGGTAATTTTA
27052071 GTAAACTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.08
27 55 0.92
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAA
Found at i:27052010 original size:54 final size:53
Alignment explanation
Indices: 27051964--27052068 Score: 124
Period size: 54 Copynumber: 2.0 Consensus size: 53
27051954 GTAATTCTGT
* * *
27051964 AAATTGAGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
27052018 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
27052069 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
53 11 0.25
54 33 0.75
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:27052084 original size:27 final size:27
Alignment explanation
Indices: 27051981--27052085 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
27051971 GGGTACTTTG
* * *
27051981 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
27052008 GTAAATTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
27052035 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
27052062 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
27052086 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:27054883 original size:30 final size:31
Alignment explanation
Indices: 27054849--27054912 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
27054839 GCCCTTTTCA
*
27054849 TTTTCATA-TTCATAACACTGGGCCGAAGCC
1 TTTTCAAATTTCATAACACTGGGCCGAAGCC
**
27054879 TTTTCAAATTTCATATTACTGGGCCGAAGCC
1 TTTTCAAATTTCATAACACTGGGCCGAAGCC
27054910 TTT
1 TTT
27054913 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTTCAAATTTCATAACACTGGGCCGAAGCC
Found at i:27055182 original size:23 final size:24
Alignment explanation
Indices: 27055103--27055243 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
27055093 GCTTTATCAT
* *
27055103 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
27055128 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
27055152 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
27055175 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27055199 ATAACT--GGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
27055221 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
27055244 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 5, Indels: 9
0.88 0.04 0.07
Matches are distributed among these distances:
22 22 0.21
23 23 0.21
24 50 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:27055225 original size:69 final size:71
Alignment explanation
Indices: 27055102--27055243 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 71
27055092 TGCTTTATCA
*
27055102 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACT-GGGCAAAAGCCCTTTCAATAACTGGGGCATAA
27055167 GCCCTTT
65 GCCCTTT
* * **
27055174 TATAACTGG-GGCATAAGCC-CTTTTGATAACT-GGCATAAGCCCTTTTGATAACTGGGGCATAA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
27055236 GCCCTTT
65 GCCCTTT
27055243 T
1 T
27055244 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
69 36 0.56
71 15 0.23
72 13 0.20
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:27055318 original size:20 final size:20
Alignment explanation
Indices: 27055293--27055353 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
27055283 TTATGATTAC
27055293 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
27055313 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
27055333 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
27055353 A
1 A
27055354 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:27055428 original size:25 final size:25
Alignment explanation
Indices: 27055396--27055443 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27055386 ATACATAAAC
* * *
27055396 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
27055421 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
27055444 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:27056683 original size:27 final size:27
Alignment explanation
Indices: 27056583--27056666 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
27056573 GGGCATATTC
* *
27056583 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
27056610 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
27056637 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
27056664 GTC
1 GTC
27056667 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:27056832 original size:56 final size:54
Alignment explanation
Indices: 27056705--27056941 Score: 173
Period size: 53 Copynumber: 4.4 Consensus size: 54
27056695 TTTCATCCTA
* * * * *
27056705 CAAGGGTGTTTTGGTAA-ATCTACAAACCAA-AGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAA-TTTGTAAAC
* * * * *
27056758 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTTACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAAC
* ** * ** *
27056814 CAGGGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTTCGGTAATTTACAAGC
1 CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTTGTAAAC
* **
27056867 CAAGGGTATTTTGGTAA-TTTTACAAA-CTAGGGGTATTTTGGTAATTT-TACAAAC
1 CAAGGGTATTTTGGTAATTTTTACAAATC-AAGGGTATTTCAGTAATTTGT--AAAC
*
27056921 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
27056942 GTAAATCGAG
Statistics
Matches: 145, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
53 58 0.40
54 41 0.28
55 15 0.10
56 31 0.21
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTTGTAAAC
Found at i:27056872 original size:26 final size:27
Alignment explanation
Indices: 27056705--27056941 Score: 185
Period size: 27 Copynumber: 8.8 Consensus size: 27
27056695 TTTCATCCTA
* * *
27056705 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** **
27056732 CAA-AGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
27056758 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* ** *
27056787 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
27056814 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
27056841 TGAGGGTATTTCGGTAA-TTTACAAGC
1 CAAGGGTATTTTGGTAATTTTACAAAC
27056867 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
27056894 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
27056921 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
27056942 GTAAATCGAG
Statistics
Matches: 166, Mismatches: 38, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
26 40 0.24
27 98 0.59
28 13 0.08
29 15 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:27056953 original size:27 final size:27
Alignment explanation
Indices: 27056736--27057009 Score: 169
Period size: 27 Copynumber: 10.1 Consensus size: 27
27056726 ACAAACCAAA
* * * *
27056736 GTATTTCAGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTATAAATCAAGG
*
27056763 GTATTTCTA-TAATTTTTAGAAAGTCAAGG
1 GTATTT-TAGTAA-TTTTATAAA-TCAAGG
* * *
27056792 GTATTTCT-GTAACTTTGTAAATCAGGG
1 GTATTT-TAGTAATTTTATAAATCAAGG
* * **
27056819 GTATTTTGGTAATTTTACAAATTGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
** * **
27056846 GTATTTCGGTAA-TTTACAAGCCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* * *
27056872 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTAGTAATTTTATAAATC-AAGG
* * *
27056899 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* *
27056926 GTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
*** * *
27056953 GTAAAATAGTAATTCTGTAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
*** *
27056980 GTAAAATAGTAATTCTATAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
27057007 GTA
1 GTA
27057010 AAACAGTAAT
Statistics
Matches: 204, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
26 23 0.11
27 151 0.74
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAATCAAGG
Found at i:27057010 original size:27 final size:27
Alignment explanation
Indices: 27056933--27057135 Score: 230
Period size: 27 Copynumber: 7.6 Consensus size: 27
27056923 AGGGTATTTT
* * *
27056933 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
27056960 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
27056987 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
27057014 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
27057041 GGTAATTCTGTAAGTCGA-GGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
27057067 -GATAATTATGTAAATCAGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * * *
27057094 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
27057121 GGTAATTCTGTAAAT
1 AGTAATTCTGTAAAT
27057136 GAGGGTACTT
Statistics
Matches: 157, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
25 1 0.01
26 20 0.13
27 135 0.86
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:27057153 original size:80 final size:81
Alignment explanation
Indices: 27056933--27057142 Score: 257
Period size: 80 Copynumber: 2.6 Consensus size: 81
27056923 AGGGTATTTT
* ** * * *
27056933 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 AGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTATAT
27056998 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* * * *
27057014 AGTAATTCA-GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGA-GGTAAAACGATAATTATG
1 AGTAATT-ATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTATA
*
27057077 TAAATCAGGGGTAAAAC
65 TAAATCAAGGGTAAAAC
* *
27057094 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAAT-GAGGGTA
1 AGTAATTATGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTA
27057143 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
79 4 0.04
80 68 0.61
81 39 0.35
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
AGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTATAT
AAATCAAGGGTAAAAC
Found at i:27057177 original size:27 final size:26
Alignment explanation
Indices: 27057139--27057236 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
27057129 TGTAAATGAG
27057139 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAA-TCGAA
* *
27057166 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTAC-AATCGAA
* * * *
27057193 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCGGTAATTTTACAATCGAA
27057219 GGGTATTTC-GTAATTTTA
1 -GGTATTTCGGTAATTTTA
27057237 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 15 0.25
27 42 0.71
28 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAATCGAA
Found at i:27057250 original size:26 final size:27
Alignment explanation
Indices: 27057148--27057251 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
27057138 GGGTACTTTG
* * *
27057148 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
27057175 GTAAATTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* *
27057202 GTATTTTTACAAACTAAGGGTATTTC-
1 GTAATTTTACAAACTAAGAGTATTTCA
*
27057228 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
27057252 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
26 15 0.24
27 46 0.74
28 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:27064953 original size:46 final size:46
Alignment explanation
Indices: 27064886--27065055 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
27064876 AACCCACCCC
* *
27064886 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCA
* * * * * * *
27064932 TAAGTGAACTCGGATTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACG-TTCGCATCCA
* * *
27064978 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCA
27065025 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
27065056 GGATGCTCAA
Statistics
Matches: 98, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 62 0.63
47 32 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCA
Found at i:27065003 original size:93 final size:93
Alignment explanation
Indices: 27064891--27065061 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
27064881 ACCCCTAAGT
* * *
27064891 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27064956 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
27064984 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27065049 CGAGTTCGGATGC
66 CGAGTTCGGATGC
27065062 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:27067095 original size:27 final size:27
Alignment explanation
Indices: 27067065--27067120 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
27067055 GGGTATATTG
27067065 GTAATTTTGCTCTTTAGGGGTAATTTC
1 GTAATTTTGCTCTTTAGGGGTAATTTC
27067092 GTAATTTTGCTCTTTAGGGGTAATTTC
1 GTAATTTTGCTCTTTAGGGGTAATTTC
27067119 GT
1 GT
27067121 GATCTACGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48
Consensus pattern (27 bp):
GTAATTTTGCTCTTTAGGGGTAATTTC
Found at i:27068781 original size:20 final size:20
Alignment explanation
Indices: 27068758--27068795 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27068748 CACATCCAAA
*
27068758 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
27068778 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
27068796 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:27075094 original size:28 final size:28
Alignment explanation
Indices: 27075048--27075116 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
27075038 TTTAAAACCC
*
27075048 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
27075075 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
27075103 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
27075117 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:27076768 original size:20 final size:20
Alignment explanation
Indices: 27076745--27076782 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27076735 CACATCCAAA
*
27076745 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
27076765 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
27076783 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:27079677 original size:31 final size:31
Alignment explanation
Indices: 27079620--27079699 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
27079610 GTCTCAACAT
* *
27079620 ACACTGGGCTGAAGCC-TTTCATAATTCATA
1 ACACTGGGCCGAAGCCTTTTCAAAATTCATA
27079650 ACACTGGGCCGAAGCCTTTTCAAAATTCATA
1 ACACTGGGCCGAAGCCTTTTCAAAATTCATA
*
27079681 TCACTGGGCCGAAGCCTTT
1 ACACTGGGCCGAAGCCTTT
27079700 ACTATAAGCG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 15 0.33
31 31 0.67
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
ACACTGGGCCGAAGCCTTTTCAAAATTCATA
Found at i:27080035 original size:21 final size:21
Alignment explanation
Indices: 27080010--27080060 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
27080000 TATAATGAGT
*
27080010 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
27080031 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
27080052 ATATCATGT
1 ATATCATGT
27080061 ATATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:27087436 original size:31 final size:31
Alignment explanation
Indices: 27087389--27087458 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
27087379 ATACTGGGCT
*
27087389 GAAGCC-TTTCATAATTCATAACACTAAGCC
1 GAAGCCTTTTCAAAATTCATAACACTAAGCC
* **
27087419 GAAGCCTTTTCAAAATTCATATCACTGGGCC
1 GAAGCCTTTTCAAAATTCATAACACTAAGCC
27087450 GAAGCCTTT
1 GAAGCCTTT
27087459 ACTGTAAGCG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 6 0.17
31 29 0.83
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (31 bp):
GAAGCCTTTTCAAAATTCATAACACTAAGCC
Found at i:27087709 original size:25 final size:25
Alignment explanation
Indices: 27087677--27087748 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
27087667 CTCTTTCAAT
27087677 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
27087702 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
27087727 AACTGGGGCAAAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
27087749 CACTTCCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:27087819 original size:21 final size:21
Alignment explanation
Indices: 27087780--27087844 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
27087770 ACCCAACCCA
* *
27087780 TGCATATAATGAATATATCATG
1 TGCATATCAT-AACATATCATG
*
27087802 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
27087823 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
27087844 T
1 T
27087845 ATATCAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 29 0.78
22 8 0.22
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:27091453 original size:20 final size:20
Alignment explanation
Indices: 27091430--27091521 Score: 139
Period size: 20 Copynumber: 4.6 Consensus size: 20
27091420 TATGAACCAC
*
27091430 TCCATTTACTTACTTACCAT
1 TCCATTTACTTACTTTCCAT
*
27091450 TCCATTTACTTAATTTCCAT
1 TCCATTTACTTACTTTCCAT
*
27091470 CCCATTTACTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
27091490 TCCATTTACTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
* *
27091510 TGCAATTACTTA
1 TCCATTTACTTA
27091522 GCATAAGCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.24, C:0.28, G:0.01, T:0.47
Consensus pattern (20 bp):
TCCATTTACTTACTTTCCAT
Found at i:27103607 original size:48 final size:46
Alignment explanation
Indices: 27103536--27103655 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 46
27103526 AGCTGACGCA
* * * * **
27103536 ATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGTTGATGC
1 ATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAGGCCGATGC
* *
27103584 ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGC
27103630 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
27103656 ACACATATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 37 0.58
47 2 0.03
48 25 0.39
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGC
Found at i:27103660 original size:140 final size:139
Alignment explanation
Indices: 27103398--27103660 Score: 315
Period size: 139 Copynumber: 1.9 Consensus size: 139
27103388 TCGACGCCAC
*
27103398 GTCCCAAACAGGTCTTACACTGACTTTCATACATCGAGGCTGATGCCGTGTCCCAGACAGGTCTT
1 GTCCCAAACAGGTCTTACACTGACTTTCATACATCGAGGCTGATGCCATGTCCCAGACAGGTCTT
* * * * *
27103463 ATACTGGCTGTCATCTATCGGTCGATGCTATGTCCCAGACAGGTCTTACATTGACACACAACAAG
66 ACACTAGCTCTCATCTATC-GCCGATGCTATGTCCCAGACAGGTCTTACATAGACACACAACAAG
27103528 CTGACGCAAT
130 CTGACGCAAT
* * *
27103538 GTCCCAGACAGGTCTTACACT-AGCTTGT-ATATC-TCGAGGTTGATG-CATGTCCCAGACATGT
1 GTCCCAAACAGGTCTTACACTGA-CTT-TCATA-CATCGAGGCTGATGCCATGTCCCAGACAGGT
* *
27103599 CTTACACTAGCTCTCGTCTCAAT-GCCGATGC-ATGTCCCAGACATGTCTTACACTAG-CACACA
63 CTTACACTAGCTCTCATCT--ATCGCCGATGCTATGTCCCAGACAGGTCTTACA-TAGACACACA
27103661 TATCACCCAA
Statistics
Matches: 106, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
138 26 0.25
139 39 0.37
140 37 0.35
141 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (139 bp):
GTCCCAAACAGGTCTTACACTGACTTTCATACATCGAGGCTGATGCCATGTCCCAGACAGGTCTT
ACACTAGCTCTCATCTATCGCCGATGCTATGTCCCAGACAGGTCTTACATAGACACACAACAAGC
TGACGCAAT
Found at i:27104340 original size:20 final size:18
Alignment explanation
Indices: 27104303--27104353 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
27104293 CTATAGCAAC
27104303 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
27104320 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
27104340 TTACAACTTTACAA
1 TCACAA-TTTACAA
27104354 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:27107920 original size:40 final size:40
Alignment explanation
Indices: 27107824--27108014 Score: 238
Period size: 40 Copynumber: 4.8 Consensus size: 40
27107814 CGAATGGTAT
* * * * * *
27107824 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
27107865 CCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
27107905 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
27107945 CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
27107985 CCGGGCTAATTCCCAAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
27108015 ATCACTATAA
Statistics
Matches: 132, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 108 0.82
41 24 0.18
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:27107989 original size:80 final size:80
Alignment explanation
Indices: 27107822--27108042 Score: 262
Period size: 80 Copynumber: 2.8 Consensus size: 80
27107812 TTCGAATGGT
* * * * * * *
27107822 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAACCAGGTTAAGTCCCGAAGGCAT
27107887 TTGTGCGAGTTACCAA
65 TTGTGCGAGTTACCAA
* * * *
27107903 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCAGGTTAAGTCCCGAAGGCATT
*
27107968 TGTGCGAGTTACTAA
66 TGTGCGAGTTACCAA
* * * * * * *
27107983 ATCCGGGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAACCAGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCAGGTTAAGTCCCGAAG
27108043 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
80 91 0.77
81 27 0.23
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCAGGTTAAGTCCCGAAGGCATT
TGTGCGAGTTACCAA
Found at i:27108032 original size:40 final size:39
Alignment explanation
Indices: 27107827--27108042 Score: 209
Period size: 40 Copynumber: 5.4 Consensus size: 39
27107817 ATGGTATCCG
* * *
27107827 GGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA-CCA
* * * *
27107867 GGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCG
1 GGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAACCA
* *
27107908 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAACCA
* *
27107948 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-CCA
* * * * *
27107988 GGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAACCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCA
*
27108028 GGCTATGTCCCGAAG
1 GGCTAAGTCCCGAAG
27108043 ACAATCGAGC
Statistics
Matches: 150, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
39 4 0.03
40 118 0.79
41 28 0.19
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCA
Found at i:27108055 original size:120 final size:121
Alignment explanation
Indices: 27107830--27108056 Score: 278
Period size: 120 Copynumber: 1.9 Consensus size: 121
27107820 GTATCCGGGC
* * *
27107830 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATTGTGCGA
* * * * * * * *
27107895 GTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCAGGT
66 ATCACCAAAACCAGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAACCAGGT
* * *
27107951 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCAAAGGCAATTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AACTCCCAAAGGCAATTGTGCG
* * *
27108014 AATCACTATAACCAGGCTATGTCCCGAAGACAATCGAGCGAGT
65 AATCACCAAAACCAGGCTAAGTCCCGAAGACAATCGAGCGAGT
27108057 CGCTATATCC
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
119 1 0.01
120 66 0.75
121 21 0.24
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (121 bp):
TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATTGTGCGA
ATCACCAAAACCAGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAACCAGGT
Found at i:27108067 original size:80 final size:80
Alignment explanation
Indices: 27107891--27108068 Score: 176
Period size: 80 Copynumber: 2.2 Consensus size: 80
27107881 AGGCATTTGT
* * * * * * * * *
27107891 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGT
1 GCGAGTCACTAAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGT
* * * *
27107956 CCCGAAGGCATTTGT
66 CCCGAAGACAATCGA
* * * * *
27107971 GCGAGTTACTAAATCCGGGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAACCAGGCTATGT
1 GCGAGTCACTAAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGT
27108036 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
* *
27108051 GCGAGTCGCTATATCCGG
1 GCGAGTCACTAAATCCGG
27108069 TTAAATTCCG
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (80 bp):
GCGAGTCACTAAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGT
CCCGAAGACAATCGA
Found at i:27116035 original size:40 final size:40
Alignment explanation
Indices: 27115939--27116157 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
27115929 CGAATGGTAT
* * * *
27115939 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
27115980 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
27116020 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
27116060 TCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
27116100 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
27116140 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
27116158 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 129 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:27116170 original size:120 final size:121
Alignment explanation
Indices: 27115940--27116171 Score: 306
Period size: 120 Copynumber: 1.9 Consensus size: 121
27115930 GAATGGTATC
* *
27115940 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
* * * * * * *
27116005 TGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAT
66 TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAAT
* * *
27116061 CGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
* * *
27116124 GTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGT
65 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGT
27116172 CGCTATATCC
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 70 0.74
121 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (121 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAAT
Found at i:27116178 original size:40 final size:40
Alignment explanation
Indices: 27116100--27116183 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
27116090 GTTACTAAAT
* * *
27116100 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
27116140 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
27116180 CCGG
1 CCGG
27116184 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:27122275 original size:40 final size:40
Alignment explanation
Indices: 27122209--27122375 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
27122199 GAATTGAATG
* * *
27122209 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
27122248 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
27122288 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
27122328 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
27122368 ATATCCGG
1 ATATCCGG
27122376 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:27124325 original size:44 final size:45
Alignment explanation
Indices: 27124265--27124377 Score: 192
Period size: 45 Copynumber: 2.5 Consensus size: 45
27124255 ATTAAGAAGA
27124265 AAACCGTTTGAGAGAGAGGAGAAGAA-AAGCAATTGGCCAAGGAG
1 AAACCGTTTGAGAGAGAGGAGAAGAACAAGCAATTGGCCAAGGAG
* *
27124309 AAACCGTTTGAAAGAGAGGAGAAGAACAAGCAATTGGTCAAGGAG
1 AAACCGTTTGAGAGAGAGGAGAAGAACAAGCAATTGGCCAAGGAG
*
27124354 AAATCGTTTGAGAGAGAGGAGAAG
1 AAACCGTTTGAGAGAGAGGAGAAG
27124378 GGATATTTGG
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
44 25 0.39
45 39 0.61
ACGTcount: A:0.43, C:0.10, G:0.34, T:0.13
Consensus pattern (45 bp):
AAACCGTTTGAGAGAGAGGAGAAGAACAAGCAATTGGCCAAGGAG
Found at i:27129870 original size:68 final size:70
Alignment explanation
Indices: 27129798--27129995 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
27129788 ACACCCTGTA
* * * *
27129798 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
27129860 ATAAAT
65 ATAAAT
*
27129866 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
27129931 ATAAAT
65 ATAAAT
*
27129937 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
27129996 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:27129909 original size:41 final size:41
Alignment explanation
Indices: 27129864--27129981 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
27129854 TGAAAGATAA
27129864 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
27129905 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
27129935 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
27129976 ATGTAG
1 ATGTAG
27129982 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:27129921 original size:71 final size:71
Alignment explanation
Indices: 27129832--27129995 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
27129822 GAGATGTATC
27129832 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
27129897 AGGACA
66 AGGACA
27129903 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
27129968 AGGACA
66 AGGACA
27129974 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
27129996 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:27135290 original size:58 final size:55
Alignment explanation
Indices: 27135192--27135309 Score: 150
Period size: 58 Copynumber: 2.1 Consensus size: 55
27135182 ATATGAAAAA
27135192 GAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
***
27135247 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAA-AAAAGAAAAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
27135305 GAAAA
1 GAAAA
27135310 GGGGGAGGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
55 4 0.07
56 12 0.22
57 3 0.05
58 33 0.60
59 3 0.05
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (55 bp):
GAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:27136587 original size:40 final size:40
Alignment explanation
Indices: 27136501--27136667 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
27136491 AAATTGAATG
* * ** *
27136501 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* * *
27136540 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * * *
27136580 ATGTCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
27136620 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
27136660 ATATCCGG
1 ATATCCGG
27136668 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:27140652 original size:68 final size:70
Alignment explanation
Indices: 27140580--27140777 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
27140570 ACACCCTGTA
* * * *
27140580 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
27140642 ATAAAT
65 ATAAAT
*
27140648 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
27140713 ATAAAT
65 ATAAAT
*
27140719 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
27140778 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Done.