Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 105 of 444
Found at i:25904337 original size:8 final size:8
Alignment explanation
Indices: 25904326--25904419 Score: 70
Period size: 8 Copynumber: 11.9 Consensus size: 8
25904316 ATATTAAATA
25904326 TTAAATTT
1 TTAAATTT
*
25904334 TTAAGTTT
1 TTAAATTT
*
25904342 TT-TATTT
1 TTAAATTT
25904349 TTAAATTT
1 TTAAATTT
*
25904357 TT-TATTT
1 TTAAATTT
*
25904364 TT-TATTT
1 TTAAATTT
**
25904371 TTTTATTT
1 TTAAATTT
25904379 TTAAA-TT
1 TTAAATTT
*
25904386 TTAATTTT
1 TTAAATTT
25904394 TTGAATATTT
1 TT-AA-ATTT
25904404 TTATAATTT
1 TTA-AATTT
25904413 TTAAATT
1 TTAAATT
25904420 AACATATAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
7 24 0.34
8 31 0.44
9 10 0.14
10 6 0.08
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (8 bp):
TTAAATTT
Found at i:25904348 original size:15 final size:15
Alignment explanation
Indices: 25904330--25904419 Score: 92
Period size: 15 Copynumber: 5.7 Consensus size: 15
25904320 TAAATATTAA
*
25904330 ATTTTTAAGTTTTTT
1 ATTTTTAAATTTTTT
25904345 ATTTTTAAATTTTTT
1 ATTTTTAAATTTTTT
* *
25904360 ATTTTTTATTTTTTT
1 ATTTTTAAATTTTTT
25904375 ATTTTTAAATTTTAATT
1 ATTTTTAAATTTT--TT
*
25904392 -TTTTGAATATTTTTAT
1 ATTTTTAA-ATTTTT-T
25904408 AATTTTTAAATT
1 -ATTTTTAAATT
25904420 AACATATAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
15 39 0.63
16 7 0.11
17 10 0.16
18 6 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
ATTTTTAAATTTTTT
Found at i:25904349 original size:7 final size:7
Alignment explanation
Indices: 25904339--25904395 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
25904329 AATTTTTAAG
25904339 TTTTTTA
1 TTTTTTA
*
25904346 TTTTTAAA
1 TTTTT-TA
25904354 TTTTTTA
1 TTTTTTA
25904361 TTTTTTA
1 TTTTTTA
25904368 TTTTTTTA
1 -TTTTTTA
*
25904376 TTTTTAA
1 TTTTTTA
* *
25904383 ATTTTAA
1 TTTTTTA
25904390 TTTTTT
1 TTTTTT
25904396 GAATATTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
7 29 0.69
8 13 0.31
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTTA
Found at i:25904932 original size:29 final size:28
Alignment explanation
Indices: 25904900--25904960 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
25904890 TAATTTAGAT
*
25904900 TTTAGGGTTTACAGTTTAAGAGTTTATGA
1 TTTAGGGTTTACAGTTT-AGAGTTTATAA
* * *
25904929 TTTATGGTTTATAGTTTAGGGTTTATAA
1 TTTAGGGTTTACAGTTTAGAGTTTATAA
25904957 TTTA
1 TTTA
25904961 CGATCTATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (28 bp):
TTTAGGGTTTACAGTTTAGAGTTTATAA
Found at i:25904954 original size:14 final size:14
Alignment explanation
Indices: 25904900--25904982 Score: 69
Period size: 14 Copynumber: 5.8 Consensus size: 14
25904890 TAATTTAGAT
*
25904900 TTTAGGGTTTACAG
1 TTTAGGGTTTATAG
*
25904914 TTTAAGAGTTTAT-G
1 TTT-AGGGTTTATAG
*
25904928 ATTTATGGTTTATAG
1 -TTTAGGGTTTATAG
*
25904943 TTTAGGGTTTATAA
1 TTTAGGGTTTATAG
* * *
25904957 TTTACGATCTATAG
1 TTTAGGGTTTATAG
25904971 TTTATGGGTTTA
1 TTTA-GGGTTTA
25904983 GAGGTTAGTT
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
14 37 0.71
15 15 0.29
ACGTcount: A:0.25, C:0.04, G:0.22, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:25905028 original size:14 final size:14
Alignment explanation
Indices: 25904992--25905044 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
25904982 AGAGGTTAGT
*
25904992 TTTAAGGCTTGGGG
1 TTTAAGGGTTGGGG
25905006 TTTAAGGGTTGGGG
1 TTTAAGGGTTGGGG
* * *
25905020 TTTAGGGGTTAGAGT
1 TTTAAGGGTT-GGGG
25905035 TTTAAGGGTT
1 TTTAAGGGTT
25905045 TATGATTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
14 22 0.67
15 11 0.33
ACGTcount: A:0.17, C:0.02, G:0.42, T:0.40
Consensus pattern (14 bp):
TTTAAGGGTTGGGG
Found at i:25905898 original size:42 final size:40
Alignment explanation
Indices: 25905771--25905949 Score: 205
Period size: 41 Copynumber: 4.4 Consensus size: 40
25905761 GTTACATGAC
* *
25905771 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCT-GT
* * * *
25905812 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGT
*
25905852 TTTTAGCGGAGTTTTAACAAAAAAACGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTT-AC-AAAAAACGCCGCTAATGCTCTGT
** * * **
25905894 TTTTAGCGGTATTTTAACAAAAAATGCCGCTATTGCTCAAT
1 TTTTAGCGGCGTTTT-ACAAAAAACGCCGCTAATGCTCTGT
25905935 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
25905950 TGCTAAAACG
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 14 0.12
41 71 0.59
42 36 0.30
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGT
Found at i:25905923 original size:83 final size:81
Alignment explanation
Indices: 25905771--25905949 Score: 207
Period size: 83 Copynumber: 2.2 Consensus size: 81
25905761 GTTACATGAC
* * * * *
25905771 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTACAAAAAAC
**
25905836 GCCGCTAATGCTCTGG
66 GCCGCTAATGCTCAAG
* * *
25905852 TTTTAGCGGAGTTTTAACAAAAAAACGCCGCTAATGCTCT-GTTTTTAGCGGTATTTTAACAAAA
1 TTTTAGCGGCGTTTT-AC-AAAAAACGCCGCTAATGCTCTGGTCTTTAGCGGCATTTT-ACAAAA
* * *
25905916 AATGCCGCTATTGCTCAAT
63 AACGCCGCTAATGCTCAAG
25905935 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
25905950 TGCTAAAACG
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 14 0.17
82 16 0.20
83 51 0.63
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTACAAAAAAC
GCCGCTAATGCTCAAG
Found at i:25912710 original size:39 final size:38
Alignment explanation
Indices: 25912629--25912711 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 38
25912619 TTGTCTGAAC
* * *
25912629 TAAAGACATGTATTAAAGACGTCTAAACTAGGACATATT
1 TAAA-ACATATATTAAAGACGTCTAAACAAGGACATAAT
* * *
25912668 TAAAACATATATTTAAGATGTCCTAAACAATGACATAAT
1 TAAAACATATATTAAAGACGT-CTAAACAAGGACATAAT
25912707 TAAAA
1 TAAAA
25912712 ACTCTTACTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 14 0.38
39 23 0.62
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (38 bp):
TAAAACATATATTAAAGACGTCTAAACAAGGACATAAT
Found at i:25912780 original size:36 final size:35
Alignment explanation
Indices: 25912697--25912803 Score: 119
Period size: 36 Copynumber: 2.9 Consensus size: 35
25912687 GTCCTAAACA
*
25912697 ATGACATAATTAAAAACTCTTACTAAAT-ATGTTTAGATT
1 ATGACATAATT-AAAACTC--A-TAAATAAT-TTTAAATT
25912736 ATGACATAATTAAAACTCATAAATAATTTTCAAATT
1 ATGACATAATTAAAACTCATAAATAATTTT-AAATT
*
25912772 ATGACATAATTAAAGACTCA-AACTAATTTTAA
1 ATGACATAATTAAA-ACTCATAAATAATTTTAA
25912804 CTAAATAGCT
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
35 10 0.16
36 30 0.48
37 5 0.08
38 7 0.11
39 11 0.17
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.36
Consensus pattern (35 bp):
ATGACATAATTAAAACTCATAAATAATTTTAAATT
Found at i:25913743 original size:19 final size:19
Alignment explanation
Indices: 25913719--25913781 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
25913709 ACTAAAATGT
25913719 AAAGTTGTGAAAATTGATG
1 AAAGTTGTGAAAATTGATG
* *
25913738 AAAGTTGT-AAATTTAAT-
1 AAAGTTGTGAAAATTGATG
25913755 AAAGTTGTGAAAATTGATG
1 AAAGTTGTGAAAATTGATG
*
25913774 AAATTTGT
1 AAAGTTGT
25913782 AAATTTTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 8 0.22
18 14 0.38
19 15 0.41
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
AAAGTTGTGAAAATTGATG
Found at i:25913759 original size:36 final size:36
Alignment explanation
Indices: 25913718--25913787 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
25913708 GACTAAAATG
25913718 TAAAGTTGTGAAAATTGATGAAAGTTGTAAATTTAA
1 TAAAGTTGTGAAAATTGATGAAAGTTGTAAATTTAA
*
25913754 TAAAGTTGTGAAAATTGATGAAATTTGTAAATTT
1 TAAAGTTGTGAAAATTGATGAAAGTTGTAAATTT
25913788 TGTATTGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.39
Consensus pattern (36 bp):
TAAAGTTGTGAAAATTGATGAAAGTTGTAAATTTAA
Found at i:25919370 original size:14 final size:15
Alignment explanation
Indices: 25919353--25919381 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25919343 TCACAAAAAT
25919353 TTCACACAT-ATAAA
1 TTCACACATAATAAA
25919367 TTCACACATAATAAA
1 TTCACACATAATAAA
25919382 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:25922363 original size:28 final size:28
Alignment explanation
Indices: 25922314--25922382 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
25922304 CTTAAAACCC
*
25922314 TAGGGGT-ATATCGATAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTTTGCTCTT
*
25922341 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTTTGCTCTT
25922369 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
25922383 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTTTGCTCTT
Found at i:25924015 original size:20 final size:20
Alignment explanation
Indices: 25923992--25924029 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25923982 CACATCCAAA
*
25923992 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
25924012 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
25924030 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:25929462 original size:16 final size:17
Alignment explanation
Indices: 25929431--25929463 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25929421 TTCATAAACA
*
25929431 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
25929448 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
25929464 GTACCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:25939890 original size:3 final size:3
Alignment explanation
Indices: 25939882--25939939 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
25939872 TATTGAGGAG
25939882 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
25939930 TAA TAA TAA T
1 TAA TAA TAA T
25939940 GATGATGATG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:25939944 original size:3 final size:3
Alignment explanation
Indices: 25939938--25939963 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25939928 AATAATAATA
25939938 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
25939964 TAAGAAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:25940381 original size:23 final size:23
Alignment explanation
Indices: 25940339--25940382 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
25940329 TAAATATTAT
*
25940339 TTTATTAATATTTTGCTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
25940362 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
25940383 AAAATGGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:25946612 original size:27 final size:27
Alignment explanation
Indices: 25946582--25946638 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
25946572 CTCTTGGAAG
25946582 CCACCGATGATAAATGATTAAATTCCA
1 CCACCGATGATAAATGATTAAATTCCA
*
25946609 CCACCGATGATAAATGATTAAATTCTA
1 CCACCGATGATAAATGATTAAATTCCA
25946636 CCA
1 CCA
25946639 TTCTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (27 bp):
CCACCGATGATAAATGATTAAATTCCA
Found at i:25947813 original size:3 final size:3
Alignment explanation
Indices: 25947805--25947868 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
25947795 AACTGAAAAA
25947805 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
25947853 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
25947869 AAAGTTCACA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:25966150 original size:6 final size:6
Alignment explanation
Indices: 25966141--25966174 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
25966131 TTAATTTCGG
25966141 TTTTGA TTTTGA TTTTGA TTTCT-A TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTT-TGA TTTTGA TTTT
25966175 TATTACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 1 0.04
6 24 0.92
7 1 0.04
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:25966167 original size:18 final size:18
Alignment explanation
Indices: 25966146--25966188 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
25966136 TTCGGTTTTG
* *
25966146 ATTTTGATTTTGATTTCT
1 ATTTTGATTTTGATTACA
*
25966164 ATTTTGATTTTTATTACA
1 ATTTTGATTTTGATTACA
25966182 ATTTTGA
1 ATTTTGA
25966189 AACACTCACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (18 bp):
ATTTTGATTTTGATTACA
Found at i:25966178 original size:12 final size:12
Alignment explanation
Indices: 25966141--25966178 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
25966131 TTAATTTCGG
*
25966141 TTTTGATTTTGA
1 TTTTGATTTTTA
*
25966153 TTTTGATTTCTA
1 TTTTGATTTTTA
25966165 TTTTGATTTTTA
1 TTTTGATTTTTA
25966177 TT
1 TT
25966179 ACAATTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.16, C:0.03, G:0.11, T:0.71
Consensus pattern (12 bp):
TTTTGATTTTTA
Found at i:25966220 original size:6 final size:6
Alignment explanation
Indices: 25966204--25966299 Score: 68
Period size: 6 Copynumber: 16.0 Consensus size: 6
25966194 TCACTAATTC
* ** * * * * *
25966204 TGATTT AGATTT TGATTT CAATTT CGATTT CGATTT CGATCT CGATTT
1 TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT TGATTT
* * * *
25966252 AGAATT AGAATT TGATTT TGATTT TGA-TT TGTATTT TGATTT TGATTT
1 TGATTT TGATTT TGATTT TGATTT TGATTT TG-ATTT TGATTT TGATTT
25966300 AGGGTTATTT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
5 4 0.05
6 69 0.90
7 4 0.05
ACGTcount: A:0.23, C:0.06, G:0.16, T:0.55
Consensus pattern (6 bp):
TGATTT
Found at i:25966294 original size:18 final size:17
Alignment explanation
Indices: 25966204--25966299 Score: 75
Period size: 18 Copynumber: 5.4 Consensus size: 17
25966194 TCACTAATTC
25966204 TGATTTAGATTTTGATTT
1 TGATTT-GATTTTGATTT
** *
25966222 CAATTTCGATTTCGATTT
1 TGATTT-GATTTTGATTT
* * * *
25966240 CGATCTCGATTTAGAATT
1 TGAT-TTGATTTTGATTT
*
25966258 AGAATTTGATTTTGATTT
1 TG-ATTTGATTTTGATTT
25966276 TGATTTGTATTTTGATTT
1 TGATTTG-ATTTTGATTT
25966294 TGATTT
1 TGATTT
25966300 AGGGTTATTT
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
17 5 0.08
18 54 0.87
19 3 0.05
ACGTcount: A:0.23, C:0.06, G:0.16, T:0.55
Consensus pattern (17 bp):
TGATTTGATTTTGATTT
Found at i:25966315 original size:6 final size:6
Alignment explanation
Indices: 25966205--25966321 Score: 62
Period size: 6 Copynumber: 19.8 Consensus size: 6
25966195 CACTAATTCT
* * * * *
25966205 GATTTA GATTTT GATTTC AATTTC GATTTC GATTTC GATCTC GATTTA
1 GATTTC GATTTC GATTTC GATTTC GATTTC GATTTC GATTTC GATTTC
* * * * * * *
25966253 GAATTA GAATTT- GATTTT GATTTT GATTT- GTATTTT GATTTT GATTTA
1 GATTTC G-ATTTC GATTTC GATTTC GATTTC G-ATTTC GATTTC GATTTC
**
25966301 GGGTT- -ATTTC GATTTC GATTT
1 GATTTC GATTTC GATTTC GATTT
25966322 TATTTGTTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
4 2 0.02
5 5 0.05
6 80 0.88
7 4 0.04
ACGTcount: A:0.22, C:0.07, G:0.17, T:0.54
Consensus pattern (6 bp):
GATTTC
Found at i:25966834 original size:15 final size:15
Alignment explanation
Indices: 25966805--25966850 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
25966795 TGAAGAAAAC
* *
25966805 ATGTCTAGTAATGAT
1 ATGTCTGGTAGTGAT
*
25966820 GTGTCTGGTAGTGAT
1 ATGTCTGGTAGTGAT
*
25966835 ATGTCAGGTAGTGAT
1 ATGTCTGGTAGTGAT
25966850 A
1 A
25966851 GTGATGCATC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.26, C:0.07, G:0.30, T:0.37
Consensus pattern (15 bp):
ATGTCTGGTAGTGAT
Found at i:25968610 original size:40 final size:40
Alignment explanation
Indices: 25968507--25968615 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
25968497 TTTTAGTAAA
* *
25968507 TGTTTTTTAATATGCATGCACTGATTGTTGGTGTGTTGAC
1 TGTTTTTTAATATGCATGCAGTGATTATTGGTGTGTTGAC
* * * *
25968547 TATTTATTAATATGCATACAGTGATTATTGGTGTGTTGGC
1 TGTTTTTTAATATGCATGCAGTGATTATTGGTGTGTTGAC
* *
25968587 TGTTTTTTAATATGCATGTAGTGAGTATT
1 TGTTTTTTAATATGCATGCAGTGATTATT
25968616 TTTTTATAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.22, C:0.07, G:0.23, T:0.48
Consensus pattern (40 bp):
TGTTTTTTAATATGCATGCAGTGATTATTGGTGTGTTGAC
Found at i:25969820 original size:7 final size:7
Alignment explanation
Indices: 25969808--25969832 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25969798 GAAATGTGTA
25969808 AGAATTG
1 AGAATTG
25969815 AGAATTG
1 AGAATTG
25969822 AGAATTG
1 AGAATTG
25969829 AGAA
1 AGAA
25969833 ATACATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (7 bp):
AGAATTG
Found at i:25969930 original size:16 final size:16
Alignment explanation
Indices: 25969909--25969951 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
25969899 TGAGCTGGTT
25969909 AGCCATGTATATCAGC
1 AGCCATGTATATCAGC
25969925 AGCCATGTATATCAGC
1 AGCCATGTATATCAGC
25969941 AGCCATGTATA
1 AGCCATGTATA
25969952 ATACTTGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AGCCATGTATATCAGC
Found at i:25970184 original size:38 final size:36
Alignment explanation
Indices: 25970130--25970213 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
25970120 GTTAGCCATG
***
25970130 TATACCAGCAGCCATGTATAACATATGTTAAGCAACAA
1 TATACCAGCAGCCATGTAT-AC-TAACATAAGCAACAA
*
25970168 TATACCAGCAGGCATGTATACTAACATAAGCAACAA
1 TATACCAGCAGCCATGTATACTAACATAAGCAACAA
*
25970204 TTTACCAGCA
1 TATACCAGCA
25970214 ACAAAATTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
36 21 0.51
37 2 0.05
38 18 0.44
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (36 bp):
TATACCAGCAGCCATGTATACTAACATAAGCAACAA
Found at i:25971280 original size:75 final size:75
Alignment explanation
Indices: 25971158--25971315 Score: 205
Period size: 75 Copynumber: 2.1 Consensus size: 75
25971148 CTCTTTTCCC
* *
25971158 AAAAATACTAAATTATTTATTCACCAAAAAAAAATATTACTATAAAAATAAAATTAATATTTTAT
1 AAAAATACTAAATTATTTATT-ACCAAAAAAAAATATAACTACAAAAATAAAATTAATATTTTAT
*
25971223 TATTCATA-CA
65 TATACATACCA
* * *
25971233 AAAAATACTAAACTGT-TTTATT-CCAAAAAAACATTATAATTACAAAAATAAAATTATTATTTT
1 AAAAATACTAAA-T-TATTTATTACCAAAAAAA-AATATAACTACAAAAATAAAATTAATATTTT
25971296 ATTATACATACCA
63 ATTATACATACCA
25971309 AAAAATA
1 AAAAATA
25971316 ACATCACATA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
74 9 0.12
75 47 0.64
76 16 0.22
77 1 0.01
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (75 bp):
AAAAATACTAAATTATTTATTACCAAAAAAAAATATAACTACAAAAATAAAATTAATATTTTATT
ATACATACCA
Found at i:25972250 original size:20 final size:20
Alignment explanation
Indices: 25972225--25972267 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
25972215 ATCAGTGTTC
25972225 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
* *
25972245 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTCAGGATT
25972265 TTA
1 TTA
25972268 ATTTGGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.51
Consensus pattern (20 bp):
TTATCCTGAATTTCAGGATT
Found at i:25974316 original size:12 final size:12
Alignment explanation
Indices: 25974276--25974315 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
25974266 TTAATTTATT
25974276 TATTTTTAATTA
1 TATTTTTAATTA
25974288 TATTTTTAA-TA
1 TATTTTTAATTA
*
25974299 -AATTTTAATTA
1 TATTTTTAATTA
25974310 T-TTTTT
1 TATTTTT
25974316 TTATCCTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
10 7 0.29
11 8 0.33
12 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTTTTAATTA
Found at i:25975480 original size:22 final size:22
Alignment explanation
Indices: 25975437--25975480 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
25975427 GATCATTGTC
*
25975437 TTGCAACATGGGAAGTTCAATG
1 TTGCAACATGGGAAGTACAATG
*
25975459 TTGCAACATAGGG-AGTAGAATG
1 TTGCAACAT-GGGAAGTACAATG
25975481 CAAGAATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TTGCAACATGGGAAGTACAATG
Found at i:25979432 original size:54 final size:54
Alignment explanation
Indices: 25979367--25979499 Score: 203
Period size: 54 Copynumber: 2.5 Consensus size: 54
25979357 TTTCGTAAAA
* * *
25979367 GGGATTTAGCCTGGATTGGTAATCCTGACAATGCTCTATAAGTTAATAATACGG
1 GGGATTTAGCCTGGACTGGTAATCCTGACAATGCTCAATAAGTTAATAATACAG
* * * *
25979421 GGGATTTAGCCTAGACTGGTAATCCTGACAATGCTCAATTAGTTAATACTATAG
1 GGGATTTAGCCTGGACTGGTAATCCTGACAATGCTCAATAAGTTAATAATACAG
25979475 GGGATTTAGCCTGGACTGGTAATCC
1 GGGATTTAGCCTGGACTGGTAATCC
25979500 CGCCGTAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCCTGACAATGCTCAATAAGTTAATAATACAG
Found at i:25989245 original size:30 final size:30
Alignment explanation
Indices: 25989211--25989269 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
25989201 ATCTCTAGGG
25989211 TGCAATCAACTCCGCTTAATTATGACAAAA
1 TGCAATCAACTCCGCTTAATTATGACAAAA
*
25989241 TGCAATCAACTCTGCTTAATTATGACAAA
1 TGCAATCAACTCCGCTTAATTATGACAAA
25989270 TTTACTCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (30 bp):
TGCAATCAACTCCGCTTAATTATGACAAAA
Found at i:25995256 original size:20 final size:20
Alignment explanation
Indices: 25995233--25995278 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
25995223 TAAGCTTAGT
25995233 TGAGCTCAAACGAGCTGAAA
1 TGAGCTCAAACGAGCTGAAA
* *
25995253 TGAGCTCAAATGAGCTGAAT
1 TGAGCTCAAACGAGCTGAAA
25995273 TGAGCT
1 TGAGCT
25995279 GGATAGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTGAAA
Found at i:25995279 original size:10 final size:10
Alignment explanation
Indices: 25995233--25995279 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
25995223 TAAGCTTAGT
*
25995233 TGAGCTCAAA
1 TGAGCTGAAA
*
25995243 CGAGCTGAAA
1 TGAGCTGAAA
*
25995253 TGAGCTCAAA
1 TGAGCTGAAA
*
25995263 TGAGCTGAAT
1 TGAGCTGAAA
25995273 TGAGCTG
1 TGAGCTG
25995280 GATAGAGCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (10 bp):
TGAGCTGAAA
Found at i:25998747 original size:54 final size:53
Alignment explanation
Indices: 25998676--25998919 Score: 389
Period size: 54 Copynumber: 4.5 Consensus size: 53
25998666 GTCGTTAAAA
25998676 GGGATTTAGCCTGGACTGGTAATCCCGCTAATGCTCTATGAGTTAATACTACGG
1 GGGATTTAGCCTGGACTGGTAATCCCGC-AATGCTCTATGAGTTAATACTACGG
*
25998730 GGGATTTAGCCTAGACTGGTAATCCCGACAATGCTCTATGAGTTAATACTACGG
1 GGGATTTAGCCTGGACTGGTAATCCCG-CAATGCTCTATGAGTTAATACTACGG
* *
25998784 GGGATTTAGCCTGGACTGGTAATCCCGATAATGCTCTATGAGTTAATACTATGG
1 GGGATTTAGCCTGGACTGGTAATCCCG-CAATGCTCTATGAGTTAATACTACGG
* * *
25998838 GAGATTTAGCCTGGACTGGTAATCCCGACAATGCTTTATGAGTTAATACTAGGG
1 GGGATTTAGCCTGGACTGGTAATCCCG-CAATGCTCTATGAGTTAATACTACGG
*
25998892 GGGATTTAGCCTGGACTAGTAATCCCGC
1 GGGATTTAGCCTGGACTGGTAATCCCGC
25998920 CGTAAGATGT
Statistics
Matches: 179, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
53 1 0.01
54 177 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (53 bp):
GGGATTTAGCCTGGACTGGTAATCCCGCAATGCTCTATGAGTTAATACTACGG
Found at i:26027218 original size:24 final size:24
Alignment explanation
Indices: 26027182--26027236 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
26027172 TAAATGCGAA
*
26027182 TAAAAATCGTAATACAAAATTAAT
1 TAAAAAACGTAATACAAAATTAAT
* * **
26027206 TAAAAAACTTAATCCAATTTTAAT
1 TAAAAAACGTAATACAAAATTAAT
*
26027230 AAAAAAA
1 TAAAAAA
26027237 TGAGAGTGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (24 bp):
TAAAAAACGTAATACAAAATTAAT
Found at i:26027300 original size:22 final size:22
Alignment explanation
Indices: 26027261--26027312 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
26027251 GAGAATTGAG
* *
26027261 TTGAGTGAGAATTAAGAAAGGA
1 TTGAGAGAGAATTAAGAAAGAA
* * *
26027283 TTGAGAGAGGATTGAGAATGAA
1 TTGAGAGAGAATTAAGAAAGAA
26027305 TTGAGAGA
1 TTGAGAGA
26027313 AAGTTGAGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (22 bp):
TTGAGAGAGAATTAAGAAAGAA
Found at i:26027694 original size:16 final size:16
Alignment explanation
Indices: 26027666--26027698 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26027656 GTAAACTAAT
26027666 ATATATCTATAATTTA
1 ATATATCTATAATTTA
26027682 ATATA-CTAGTAATTTA
1 ATATATCTA-TAATTTA
26027698 A
1 A
26027699 AATGATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
ATATATCTATAATTTA
Found at i:26029526 original size:15 final size:17
Alignment explanation
Indices: 26029503--26029535 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26029493 TTTAGATTAG
26029503 TTTTATTTAAAA-ATAA
1 TTTTATTTAAAATATAA
26029519 TTTT-TTTAAAATATAA
1 TTTTATTTAAAATATAA
26029535 T
1 T
26029536 ATATAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTATTTAAAATATAA
Found at i:26032351 original size:16 final size:17
Alignment explanation
Indices: 26032330--26032370 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
26032320 CGCCATTTGA
26032330 CGAACTCTAAGGT-TGG
1 CGAACTCTAAGGTCTGG
*
26032346 CGAACTCTAGGGTCTGG
1 CGAACTCTAAGGTCTGG
*
26032363 CGGACTCT
1 CGAACTCT
26032371 TTTATGAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (17 bp):
CGAACTCTAAGGTCTGG
Found at i:26033901 original size:26 final size:26
Alignment explanation
Indices: 26033872--26033929 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
26033862 CCCAATATAT
26033872 GGCTCTTCGTGAACTTCCCGATTAAA
1 GGCTCTTCGTGAACTTCCCGATTAAA
* * ** *
26033898 GGCTCTTTGTGAGCTTCTTGATTAAT
1 GGCTCTTCGTGAACTTCCCGATTAAA
26033924 GGCTCT
1 GGCTCT
26033930 CTAGAGCTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAACTTCCCGATTAAA
Found at i:26034059 original size:24 final size:24
Alignment explanation
Indices: 26034032--26034086 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
26034022 GGCTCGCATA
* * *
26034032 AGCTTTCTGATTATGGCTCTTATG
1 AGCTTCCTAATTATAGCTCTTATG
26034056 AGCTTCCTAATTATAGCTCTTATG
1 AGCTTCCTAATTATAGCTCTTATG
26034080 AGCTTCC
1 AGCTTCC
26034087 CGTTATACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (24 bp):
AGCTTCCTAATTATAGCTCTTATG
Found at i:26034806 original size:2 final size:2
Alignment explanation
Indices: 26034799--26034827 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26034789 ATGCATTTTG
26034799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26034828 GCCTTATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26039496 original size:28 final size:27
Alignment explanation
Indices: 26039444--26039555 Score: 75
Period size: 28 Copynumber: 3.9 Consensus size: 27
26039434 CTATTCAGAA
* *
26039444 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
*
26039471 ATCAGTATTAATCTGGGCCATAGCCCTT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
**
26039499 A-CAGTAACAGAGTATACTGGGCCTAGCCCAT
1 ATCAGT-A-TTA--AT-CTGGGCCTAGCCCAT
* *
26039530 ATCAGTATCAATCTGGGTCGTAGCCC
1 ATCAGTATTAATCTGGG-CCTAGCCC
26039556 TATTACAAGT
Statistics
Matches: 67, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
27 19 0.28
28 24 0.36
29 1 0.01
30 1 0.01
31 11 0.16
32 11 0.16
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:26039609 original size:20 final size:20
Alignment explanation
Indices: 26039584--26039629 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26039574 ATTGGGCCTT
26039584 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
26039604 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
26039623 GCCCATA
1 GCCCATA
26039630 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:26044964 original size:28 final size:27
Alignment explanation
Indices: 26044912--26044964 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
26044902 CTATTCAGAA
* *
26044912 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
26044939 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
26044965 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:26045049 original size:60 final size:59
Alignment explanation
Indices: 26044926--26045060 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
26044916 GTGTTAACTA
* *
26044926 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
26044987 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
26045047 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
26045061 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:26045078 original size:20 final size:20
Alignment explanation
Indices: 26045053--26045098 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26045043 ATTGGGCCTT
26045053 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
26045073 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
26045092 GCCCATA
1 GCCCATA
26045099 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:26046426 original size:28 final size:29
Alignment explanation
Indices: 26046395--26046449 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
26046385 AAGAGATGAG
*
26046395 AGAAGG-ATAGAAAAGAATAAA-AAATAGA
1 AGAAGGAAAAGAAAA-AATAAATAAATAGA
26046423 AGAAGGAAAAGAAAAAATAAATAAATA
1 AGAAGGAAAAGAAAAAATAAATAAATA
26046450 AATCCTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (29 bp):
AGAAGGAAAAGAAAAAATAAATAAATAGA
Found at i:26050905 original size:8 final size:8
Alignment explanation
Indices: 26050892--26050917 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26050882 CTAATTTGTG
26050892 AAAAAATA
1 AAAAAATA
26050900 AAAAAATA
1 AAAAAATA
26050908 AAAAAATA
1 AAAAAATA
26050916 AA
1 AA
26050918 GAACACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:26052166 original size:27 final size:27
Alignment explanation
Indices: 26052136--26052188 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
26052126 AGAAAACAAG
*
26052136 GTTGGATCGTATTAAAATGTTGCATAA
1 GTTGGATCGTATTAAAATATTGCATAA
26052163 GTTGGATCGTATTAAAATATTGCATA
1 GTTGGATCGTATTAAAATATTGCATA
26052189 TTTCATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GTTGGATCGTATTAAAATATTGCATAA
Found at i:26052779 original size:21 final size:21
Alignment explanation
Indices: 26052753--26052794 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26052743 CTAAGTTAGC
26052753 CTAGCTCTCAAAAGATGAGAA
1 CTAGCTCTCAAAAGATGAGAA
26052774 CTAGCTCTCAAAAGATGAGAA
1 CTAGCTCTCAAAAGATGAGAA
26052795 TTCTCCCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (21 bp):
CTAGCTCTCAAAAGATGAGAA
Found at i:26055396 original size:2 final size:2
Alignment explanation
Indices: 26055391--26055421 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26055381 TGAAAGTTGA
26055391 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26055422 TTTTGAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:26055997 original size:44 final size:44
Alignment explanation
Indices: 26055876--26056049 Score: 253
Period size: 44 Copynumber: 4.0 Consensus size: 44
26055866 TATTATACAG
* *
26055876 TACTATTCGGGCATTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
26055920 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
26055965 TACTATTCGGGCCTTGAGCCTAGTAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
26056009 CACTATTCGGGCCTCGAGCCTAGCAGG-TGA-AATGCCGGTGA
1 TACTATTCGGGCCTTGAGCCTAGCAGGCT-ATAATGCCGGTGA
26056050 ATGAATTCGG
Statistics
Matches: 118, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
43 11 0.09
44 65 0.55
45 42 0.36
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:26059307 original size:29 final size:29
Alignment explanation
Indices: 26059275--26059332 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26059265 GTATAAATAC
26059275 TGAGCCAAAATTTGTTGAAAATTTTCAAA
1 TGAGCCAAAATTTGTTGAAAATTTTCAAA
26059304 TGAGCCAAAATTTGTTGAAAATTTTCAAA
1 TGAGCCAAAATTTGTTGAAAATTTTCAAA
26059333 ATCAGGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.34
Consensus pattern (29 bp):
TGAGCCAAAATTTGTTGAAAATTTTCAAA
Found at i:26065436 original size:6 final size:6
Alignment explanation
Indices: 26065427--26065502 Score: 55
Period size: 6 Copynumber: 12.2 Consensus size: 6
26065417 AAAATGAAAT
* * * * *
26065427 AAAGAA AAAGAA AGAGAG AAAGTAA AAAGTA ACAGAA AGGAA-AG AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAG-AA AAAGAA AAAGAA A--AAGAA AAAGAA
*
26065477 AAAGAA AAAGAG AAAGAA GAAAGAA A
1 AAAGAA AAAGAA AAAGAA -AAAGAA A
26065503 CAAACGCGAA
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
5 2 0.04
6 37 0.70
7 13 0.25
8 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.24, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:26065455 original size:25 final size:25
Alignment explanation
Indices: 26065427--26065502 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
26065417 AAAATGAAAT
*
26065427 AAAGAAAAAGAAA-GAGAGAAAGTAA
1 AAAGAAAAAGAAAGGAAAGAAAG-AA
* *
26065452 AAAGTAACAGAAAGGAAAGAAAGAA
1 AAAGAAAAAGAAAGGAAAGAAAGAA
*
26065477 AAAGAAAAAGAGAAAG-AAGAAAGAA
1 AAAGAAAAAGA-AAGGAAAGAAAGAA
26065502 A
1 A
26065503 CAAACGCGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
25 32 0.74
26 11 0.26
ACGTcount: A:0.72, C:0.01, G:0.24, T:0.03
Consensus pattern (25 bp):
AAAGAAAAAGAAAGGAAAGAAAGAA
Found at i:26065475 original size:4 final size:4
Alignment explanation
Indices: 26065433--26065502 Score: 51
Period size: 4 Copynumber: 17.8 Consensus size: 4
26065423 AAATAAAGAA
* *
26065433 AAAG AAAG AGAG AAAG TAA- AAAG TAACAG AAAGG AAAG AAAG -AA- AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG -AA-AG AAA-G AAAG AAAG AAAG AAAG
26065481 AAA- AAGAG AAAG -AAG AAAG AAA
1 AAAG AA-AG AAAG AAAG AAAG AAA
26065503 CAAACGCGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
3 11 0.21
4 30 0.57
5 10 0.19
6 2 0.04
ACGTcount: A:0.71, C:0.01, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:26065514 original size:44 final size:44
Alignment explanation
Indices: 26065412--26065504 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
26065402 TTATATAATA
* * * *
26065412 AAACAAAAATGAAATAAAGAAAAAGAAAGAGAGAAAGTAAAAAG
1 AAACAGAAAGGAAAGAAAGAAAAAGAAAAAGAGAAAGTAAAAAG
*
26065456 TAACAGAAAGGAAAGAAAGAAAAAGAAAAAGAGAAAG-AAGAAAG
1 AAACAGAAAGGAAAGAAAGAAAAAGAAAAAGAGAAAGTAA-AAAG
26065500 AAACA
1 AAACA
26065505 AACGCGAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.72, C:0.03, G:0.20, T:0.04
Consensus pattern (44 bp):
AAACAGAAAGGAAAGAAAGAAAAAGAAAAAGAGAAAGTAAAAAG
Found at i:26071394 original size:17 final size:17
Alignment explanation
Indices: 26071372--26071407 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26071362 GGTTTGTTTT
26071372 ATAACTCAAAAGAGCAA
1 ATAACTCAAAAGAGCAA
26071389 ATAACTCAAAAGAGCAA
1 ATAACTCAAAAGAGCAA
26071406 AT
1 AT
26071408 TGTTATAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.58, C:0.17, G:0.11, T:0.14
Consensus pattern (17 bp):
ATAACTCAAAAGAGCAA
Found at i:26074832 original size:14 final size:15
Alignment explanation
Indices: 26074808--26074836 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26074798 TTTCACAAAT
26074808 GATTATTGTACTTGA
1 GATTATTGTACTTGA
26074823 GATT-TTGTACTTGA
1 GATTATTGTACTTGA
26074837 ACAAAACATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
GATTATTGTACTTGA
Found at i:26078656 original size:94 final size:95
Alignment explanation
Indices: 26078468--26078656 Score: 254
Period size: 94 Copynumber: 2.0 Consensus size: 95
26078458 AAAACAAAAA
* *
26078468 CTGAAAACCAAAAAACCCACTGAAAATACAAGTAAAGAAGCATAAATCTGAAACTACAACAGAGA
1 CTGAAAACCAAAAAACCCACTGAAAATACAAATAAAGAAGCATAAATCTGAAACTAAAACAGAGA
* * * ***
26078533 TGAAAAGGCAAAGACAAACTTGTTCTAAAG
66 TGAAAAGGAAAAAAAAAACTTCAACTAAAG
* * *
26078563 CTGAAAACCAAAAAACTCACTG-AAATACAAATAAAGAAGCTTAGATCTGAAACTAAAACAGAGA
1 CTGAAAACCAAAAAACCCACTGAAAATACAAATAAAGAAGCATAAATCTGAAACTAAAACAGAGA
* *
26078627 TGAAAAGGAAAAAAAAAAGTTCAAGTAAAG
66 TGAAAAGGAAAAAAAAAACTTCAACTAAAG
26078657 ATTCATACAT
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
94 60 0.74
95 21 0.26
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.15
Consensus pattern (95 bp):
CTGAAAACCAAAAAACCCACTGAAAATACAAATAAAGAAGCATAAATCTGAAACTAAAACAGAGA
TGAAAAGGAAAAAAAAAACTTCAACTAAAG
Found at i:26082438 original size:21 final size:21
Alignment explanation
Indices: 26082412--26082452 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26082402 AGACGAGCGA
* *
26082412 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
26082433 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
26082453 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:26088265 original size:7 final size:7
Alignment explanation
Indices: 26088253--26088277 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26088243 AGTCGTTTCA
26088253 TATTTAG
1 TATTTAG
26088260 TATTTAG
1 TATTTAG
26088267 TATTTAG
1 TATTTAG
26088274 TATT
1 TATT
26088278 ATGTATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:26088875 original size:18 final size:18
Alignment explanation
Indices: 26088852--26088889 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26088842 TGCCAGGTGC
*
26088852 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
26088870 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
26088888 GT
1 GT
26088890 TTCATTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:26089167 original size:22 final size:22
Alignment explanation
Indices: 26089135--26089190 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
26089125 CCAACAGCCA
26089135 CAACCA-AATCCCCTGCCGGAG
1 CAACCACAATCCCCTGCCGGAG
* *
26089156 GAACCACAAT-CCCTGCTGGAG
1 CAACCACAATCCCCTGCCGGAG
*
26089177 CAACCACAACCCCC
1 CAACCACAATCCCC
26089191 ATTTGAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.30, C:0.45, G:0.16, T:0.09
Consensus pattern (22 bp):
CAACCACAATCCCCTGCCGGAG
Found at i:26089528 original size:139 final size:141
Alignment explanation
Indices: 26089276--26089560 Score: 448
Period size: 139 Copynumber: 2.0 Consensus size: 141
26089266 CAAAATTTAT
* *
26089276 TTTTTTAAATATATTTGTATAAACTTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTT
1 TTTTTTAAATATATTTGTACAAACTTTTTTTATATTGTTACATTTAATAAAATAAAAGTTGTTTT
* *** *
26089341 TAATATTTTAATTGTAATTTACTTTTATATTTTTAATAAAATAAAAGTTCTTTTGAATAAACCAA
66 GAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATAAAAGTTCTTTTAAATAAACCAA
*
26089406 TATTTTTAATA
131 TATTTTGAATA
26089417 TTTTTT-AATATATTTGTACAAAC-TTTTTTATATTGTTACATTTAATAAAATAAAAGTTGTTTT
1 TTTTTTAAATATATTTGTACAAACTTTTTTTATATTGTTACATTTAATAAAATAAAAGTTGTTTT
* ***
26089480 GAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATAGAAGTTCTTTTAAATAAGGTAA
66 GAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATAAAAGTTCTTTTAAATAAACCAA
26089545 TATTTTGAATA
131 TATTTTGAATA
26089556 TTTTT
1 TTTTT
26089561 ATATTTTTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
139 110 0.83
140 16 0.12
141 6 0.05
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.52
Consensus pattern (141 bp):
TTTTTTAAATATATTTGTACAAACTTTTTTTATATTGTTACATTTAATAAAATAAAAGTTGTTTT
GAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATAAAAGTTCTTTTAAATAAACCAA
TATTTTGAATA
Found at i:26089539 original size:54 final size:55
Alignment explanation
Indices: 26089457--26089577 Score: 149
Period size: 54 Copynumber: 2.2 Consensus size: 55
26089447 TATTGTTACA
* *
26089457 TTTAATAAAATAAAAGTTGTTTTGAATAAAGT-A-ATTGT-AATTTACTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAAGTAATATTGTGAA--TACTTTTATATT
* * * *
26089511 TTTAATAAAATAGAAGTTCTTTTAAATAAGGTAATATTTTGAATATTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAAGTAATATTGTGAATACTTTTATATT
26089566 TTTAATAAAATA
1 TTTAATAAAATA
26089578 TAAATAATGC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 28 0.48
55 24 0.41
56 4 0.07
57 2 0.03
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (55 bp):
TTTAATAAAATAAAAGTTCTTTTAAATAAAGTAATATTGTGAATACTTTTATATT
Found at i:26092830 original size:126 final size:126
Alignment explanation
Indices: 26092605--26093123 Score: 731
Period size: 126 Copynumber: 4.1 Consensus size: 126
26092595 GCCAAATAAG
* * *
26092605 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCC
* *
26092670 TGCTTGAAGCATTTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * * * *
26092731 AACTACTGTAGAAAAAGCGCGTCCACATAGGATCTTTTTTCAGTACTTTTGCTGACAGTACATCC
1 AACTACTGTAGAAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCC
* *
26092796 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTC-AAATTTTTTTTTCACA
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * * *
26092856 AACTACTGTAGAAAAAGTC-CGTCCATGTGGGAGATTTTTTCAGTAATTTTACTAATAGTGTATC
1 AACTACTGTAGAAAAAG-CGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
*
26092920 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA-TTTTTCAGA
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * *
26092981 AACAATTGTAGAAGAAA-CGCGTCCACGTGGGAGCTTTTTTTCAGTACTTTTACTGATAGTGCAT
1 AACTACTGTAGAA-AAAGCGCGTCCACGTGGGAGC-TTTTTTCAGTAATTTTACTGACAGTGCAT
* * * *
26093045 CCTGCTTGAAGCGTTTTTGGCACTATTTGTTCAGAAACGTCTTCTCAAATTTATTTTTTCAAA
64 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
*
26093108 AACTATTGTAGAAAAA
1 AACTACTGTAGAAAAA
26093124 AAAATTATTG
Statistics
Matches: 349, Mismatches: 38, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
124 1 0.00
125 141 0.40
126 187 0.54
127 20 0.06
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:26093048 original size:251 final size:252
Alignment explanation
Indices: 26092605--26093123 Score: 783
Period size: 251 Copynumber: 2.1 Consensus size: 252
26092595 GCCAAATAAG
* * * * *
26092605 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGACCGTCCACGTGGGAGATTTTTTCAGTAATTTTACTAACAGTGCATCC
* *
26092670 TGCTTGAAGCATTTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAACT
66 TGCTTGAAGCATTTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGAAACA
* *
26092735 ACTGTAGAAAAAGCGCGTCCACATAGGATCTTTTTTCAGTACTTTTGCTGACAGTACATCCTGCT
131 ACTGTAGAAAAAGCGCGTCCACATAGGAGCTTTTTTCAGTACTTTTACTGACAGTACATCCTGCT
*
26092800 TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTT-TTTTTTCACA
196 TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTATTTTTTCAAA
* * * *
26092856 AACTACTGTAGAAAAAGTCCGTCCATGTGGGAGATTTTTTCAGTAATTTTACTAATAGTGTATCC
1 AACTACTGTAGAAAAAGACCGTCCACGTGGGAGATTTTTTCAGTAATTTTACTAACAGTGCATCC
* *
26092921 TGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA-TTTTTCAGAAACA
66 TGCTTGAAGCATTTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGAAACA
* * * * *
26092985 ATTGTAGAAGAAA-CGCGTCCACGTGGGAGCTTTTTTTCAGTACTTTTACTGATAGTGCATCCTG
131 ACTGTAGAA-AAAGCGCGTCCACATAGGAGC-TTTTTTCAGTACTTTTACTGACAGTACATCCTG
* *
26093049 CTTGAAGCGTTTTTGGCACTATTTGTTCAGAAACGTCTTCTCAAATTTATTTTTTCAAA
194 CTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTATTTTTTCAAA
*
26093108 AACTATTGTAGAAAAA
1 AACTACTGTAGAAAAA
26093124 AAAATTATTG
Statistics
Matches: 241, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
250 34 0.14
251 183 0.76
252 24 0.10
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (252 bp):
AACTACTGTAGAAAAAGACCGTCCACGTGGGAGATTTTTTCAGTAATTTTACTAACAGTGCATCC
TGCTTGAAGCATTTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGAAACA
ACTGTAGAAAAAGCGCGTCCACATAGGAGCTTTTTTCAGTACTTTTACTGACAGTACATCCTGCT
TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTATTTTTTCAAA
Found at i:26093765 original size:25 final size:26
Alignment explanation
Indices: 26093728--26093777 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
26093718 AAACCAAATA
*
26093728 TAAAACCCCAAATGAAAACCCTAAAC
1 TAAAACCCAAAATGAAAACCCTAAAC
* *
26093754 TAAAA-CCAAAATTATAACCCTAAA
1 TAAAACCCAAAATGAAAACCCTAAA
26093778 GTTAAGGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.56, C:0.26, G:0.02, T:0.16
Consensus pattern (26 bp):
TAAAACCCAAAATGAAAACCCTAAAC
Found at i:26094404 original size:12 final size:12
Alignment explanation
Indices: 26094370--26094409 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26094360 ATCAAAACCC
*
26094370 AAAATTGAAACT
1 AAAATTGAAATT
26094382 AAAATTGAAATT
1 AAAATTGAAATT
* *
26094394 AAAATCGAAATC
1 AAAATTGAAATT
26094406 AAAA
1 AAAA
26094410 CCCCCAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.23
Consensus pattern (12 bp):
AAAATTGAAATT
Found at i:26097929 original size:21 final size:21
Alignment explanation
Indices: 26097889--26097933 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
26097879 TCCCATGTTC
*
26097889 TTCTCTGTTTCGTCTCTTTACT
1 TTCTCTGTTTCGTATCTTTA-T
*
26097911 TTCTCTTTTTC-TATCTTTAT
1 TTCTCTGTTTCGTATCTTTAT
26097931 TTC
1 TTC
26097934 ATTTATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 10 0.48
ACGTcount: A:0.07, C:0.24, G:0.04, T:0.64
Consensus pattern (21 bp):
TTCTCTGTTTCGTATCTTTAT
Found at i:26097974 original size:16 final size:17
Alignment explanation
Indices: 26097954--26097993 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
26097944 TATTTTATGT
*
26097954 TTATTATATTAATATAA
1 TTATTATATTAACATAA
26097971 -TATTATATTAACATAA
1 TTATTATATTAACATAA
26097987 TTATTAT
1 TTATTAT
26097994 TTCTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATTATATTAACATAA
Found at i:26098038 original size:22 final size:23
Alignment explanation
Indices: 26098013--26098060 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
26098003 TATAAGTAAA
*
26098013 TACATACATGTAT-TTACAAATG
1 TACAAACATGTATATTACAAATG
* *
26098035 TACAAACATGTTTATTACACATG
1 TACAAACATGTATATTACAAATG
26098058 TAC
1 TAC
26098061 CTTACTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (23 bp):
TACAAACATGTATATTACAAATG
Found at i:26099060 original size:38 final size:38
Alignment explanation
Indices: 26099007--26099109 Score: 179
Period size: 38 Copynumber: 2.7 Consensus size: 38
26098997 TCAATACATT
*
26099007 GGCACAAAGCCTGCTAGGCACAGAGCCCAAATAACACC
1 GGCACAAAACCTGCTAGGCACAGAGCCCAAATAACACC
*
26099045 GGCACAAAACTTGCTAGGCACAGAGCCCAAATAACACC
1 GGCACAAAACCTGCTAGGCACAGAGCCCAAATAACACC
*
26099083 AGCACAAAACCTGCTAGGCACAGAGCC
1 GGCACAAAACCTGCTAGGCACAGAGCC
26099110 TGAACAACAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.38, C:0.33, G:0.20, T:0.09
Consensus pattern (38 bp):
GGCACAAAACCTGCTAGGCACAGAGCCCAAATAACACC
Found at i:26100363 original size:13 final size:13
Alignment explanation
Indices: 26100315--26100356 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
26100305 AATAAAGTTG
26100315 AATCTAAAACCCTA
1 AATC-AAAACCCTA
26100329 AATCAAAACCCTA
1 AATCAAAACCCTA
26100342 AATCAAAACCCTA
1 AATCAAAACCCTA
26100355 AA
1 AA
26100357 CTAAAACTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 24 0.86
14 4 0.14
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.17
Consensus pattern (13 bp):
AATCAAAACCCTA
Found at i:26103727 original size:45 final size:45
Alignment explanation
Indices: 26103671--26103797 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
26103661 TATATGCCTA
* * * *
26103671 AAATGAGTAAGACCATAGTTGAAAGATGCTATGACGTTATGACA-
1 AAATAAGTAAGACCATAGATGAAAGATGCTATGACATCATGACAG
* * * * *
26103715 AAGATAAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATAG
1 AA-ATAAGTAAGACCATAGATGAAAGATGCTATGACATCATGACAG
*
26103761 AAATGAGTAAGACCATAGATGAAAGATGCTATGACAT
1 AAATAAGTAAGACCATAGATGAAAGATGCTATGACAT
26103798 TAGTTGATAG
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 2 0.03
45 64 0.94
46 2 0.03
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (45 bp):
AAATAAGTAAGACCATAGATGAAAGATGCTATGACATCATGACAG
Found at i:26110453 original size:16 final size:16
Alignment explanation
Indices: 26110432--26110467 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
26110422 TGTTAAGGAC
26110432 TAAATTGCAATGTGGT
1 TAAATTGCAATGTGGT
26110448 TAAATTGCAATGTGGT
1 TAAATTGCAATGTGGT
26110464 TAAA
1 TAAA
26110468 AGTCTAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (16 bp):
TAAATTGCAATGTGGT
Found at i:26110954 original size:24 final size:25
Alignment explanation
Indices: 26110927--26110982 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
26110917 CTTGCTATTT
*
26110927 AGCTCAATAAAGCTTACCGTT-TTC
1 AGCTCAATAAAGCTTACCGTTCATC
* *
26110951 AGCTCAATAGAGCTTACTGTTCATC
1 AGCTCAATAAAGCTTACCGTTCATC
26110976 AGCTCAA
1 AGCTCAA
26110983 GAGGAGCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 19 0.68
25 9 0.32
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (25 bp):
AGCTCAATAAAGCTTACCGTTCATC
Found at i:26122848 original size:3 final size:3
Alignment explanation
Indices: 26122840--26122902 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
26122830 TATGCATAAA
26122840 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26122888 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
26122903 GGTTTTATAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26123890 original size:6 final size:6
Alignment explanation
Indices: 26123879--26123912 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
26123869 ACTCTGTACC
*
26123879 TTACTG TTACTG TTACTG TTACTG TTACCG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
26123913 AGTGTATTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (6 bp):
TTACTG
Found at i:26124061 original size:18 final size:17
Alignment explanation
Indices: 26124031--26124066 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
26124021 TACTAAAAAA
26124031 ATTTACTGCTACTGAAT
1 ATTTACTGCTACTGAAT
*
26124048 ATTTGACTGTTACTGAAT
1 ATTT-ACTGCTACTGAAT
26124066 A
1 A
26124067 AATAAATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (17 bp):
ATTTACTGCTACTGAAT
Found at i:26127501 original size:26 final size:26
Alignment explanation
Indices: 26127433--26127503 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
26127423 TCTCATCCAA
*
26127433 ATTTTACCCATGATAAAATTATGACG
1 ATTTTACCCCTGATAAAATTATGACG
* * *
26127459 -TTTTACCCCCGACAAAATTATGATG
1 ATTTTACCCCTGATAAAATTATGACG
*
26127484 ATTTTACCCCTGGTAAAATT
1 ATTTTACCCCTGATAAAATT
26127504 TTGAGAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 21 0.57
26 16 0.43
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (26 bp):
ATTTTACCCCTGATAAAATTATGACG
Found at i:26127649 original size:12 final size:12
Alignment explanation
Indices: 26127632--26127656 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26127622 TGTAAATAAA
26127632 TCATTTCCATTT
1 TCATTTCCATTT
26127644 TCATTTCCATTT
1 TCATTTCCATTT
26127656 T
1 T
26127657 TAGACGCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:26127833 original size:14 final size:14
Alignment explanation
Indices: 26127814--26127841 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26127804 AGTGGAGAGA
26127814 CTGATTGGACATGT
1 CTGATTGGACATGT
26127828 CTGATTGGACATGT
1 CTGATTGGACATGT
26127842 TTAGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (14 bp):
CTGATTGGACATGT
Found at i:26129471 original size:8 final size:8
Alignment explanation
Indices: 26129458--26129482 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26129448 AAATTAGCCC
26129458 TCACATTT
1 TCACATTT
26129466 TCACATTT
1 TCACATTT
26129474 TCACATTT
1 TCACATTT
26129482 T
1 T
26129483 TACACTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:26130627 original size:26 final size:26
Alignment explanation
Indices: 26130591--26130674 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
26130581 TAATACAAAT
*
26130591 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
26130617 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
26130643 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
26130669 TGATAA
1 TGATAA
26130675 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:26132370 original size:27 final size:26
Alignment explanation
Indices: 26132266--26132380 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
26132256 TGGAGGAAGC
* *
26132266 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
26132293 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
26132320 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* **
26132347 GTATCTGGTGACTCTATCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
26132374 GTTCTGG
1 GTTCTGG
26132381 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 56 0.72
28 16 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:26132373 original size:54 final size:54
Alignment explanation
Indices: 26132266--26132380 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
26132256 TGGAGGAAGC
* *
26132266 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
* * * *
26132320 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCT
26132374 GTTCTGG
1 GTTCTGG
26132381 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
Found at i:26132466 original size:19 final size:22
Alignment explanation
Indices: 26132442--26132481 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
26132432 CTCCCCACAC
26132442 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
26132461 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
26132482 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:26136319 original size:26 final size:26
Alignment explanation
Indices: 26136290--26136373 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
26136280 TGGTACAAAT
*
26136290 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
26136316 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
26136342 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
26136368 TGATAA
1 TGATAA
26136374 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:26138019 original size:27 final size:27
Alignment explanation
Indices: 26137978--26138090 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
26137968 GAGGAAGCGT
*
26137978 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
26138005 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
26138032 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
26138060 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
26138086 TCTGG
1 TCTGG
26138091 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:26138083 original size:54 final size:54
Alignment explanation
Indices: 26137976--26138090 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
26137966 TGGAGGAAGC
*
26137976 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
26138030 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
26138084 GTTCTGG
1 GTTCTGG
26138091 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:26138176 original size:19 final size:22
Alignment explanation
Indices: 26138152--26138191 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
26138142 CTCCCCACAC
26138152 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
26138171 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
26138192 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:26140211 original size:3 final size:3
Alignment explanation
Indices: 26140205--26140260 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
26140195 TTATTTATGT
* *
26140205 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26140253 TAA TAA TA
1 TAA TAA TA
26140261 TTATTATTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:26140265 original size:3 final size:3
Alignment explanation
Indices: 26140259--26140315 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
26140249 ATAATAATAA
* *
26140259 TAT TAT TAT TAC TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26140307 TAT TAT TAT
1 TAT TAT TAT
26140316 AATTTACAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:26147934 original size:3 final size:3
Alignment explanation
Indices: 26147926--26147956 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26147916 GATATTTACT
26147926 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
26147957 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26147961 original size:3 final size:3
Alignment explanation
Indices: 26147955--26148026 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
26147945 AATAATAATA
26147955 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26148003 ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
26148027 TACAAATGGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26155606 original size:2 final size:2
Alignment explanation
Indices: 26155599--26155624 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26155589 AAAATGTACA
26155599 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26155625 TAAAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26158291 original size:28 final size:28
Alignment explanation
Indices: 26158238--26158321 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
26158228 CACTTTGTGC
26158238 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
26158267 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
26158295 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
26158322 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:26158333 original size:23 final size:24
Alignment explanation
Indices: 26158242--26158335 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
26158232 TTGTGCTATT
26158242 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
26158269 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
26158299 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
26158322 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
26158336 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:26158595 original size:21 final size:21
Alignment explanation
Indices: 26158547--26158598 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
26158537 ATGTGTCATA
*
26158547 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
***
26158568 CAGCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
26158589 TTTCAGGCAC
1 TTTCAGGCAC
26158599 TTATGTGTCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (21 bp):
TTTCAGGCACCTCGTGTGTCG
Found at i:26165384 original size:19 final size:19
Alignment explanation
Indices: 26165360--26165399 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26165350 GTCATGCGAG
26165360 TATGATCATCGACAATGTT
1 TATGATCATCGACAATGTT
26165379 TATGATCATCGACAATGTT
1 TATGATCATCGACAATGTT
26165398 TA
1 TA
26165400 AAAAGAAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TATGATCATCGACAATGTT
Found at i:26167765 original size:2 final size:2
Alignment explanation
Indices: 26167758--26167790 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26167748 CCTTCCTTTC
26167758 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26167791 AATCTTAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26168213 original size:29 final size:30
Alignment explanation
Indices: 26168181--26168243 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
26168171 CTTCATTTGG
**
26168181 AATTT-AGTCATCCTAC-TTTTATTTTTAAA
1 AATTTAAGTCAT-CTACTTTTTAAATTTAAA
*
26168210 AATTTAATTCATCTACTTTTTAAATTTAAA
1 AATTTAAGTCATCTACTTTTTAAATTTAAA
26168240 AATT
1 AATT
26168244 CGCTTTCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.51
Consensus pattern (30 bp):
AATTTAAGTCATCTACTTTTTAAATTTAAA
Found at i:26168354 original size:29 final size:30
Alignment explanation
Indices: 26168320--26168378 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
26168310 TTAATTAACA
26168320 ATATTAAAAAGTAA-TATAAAAATTAAATT
1 ATATTAAAAAGTAAGTATAAAAATTAAATT
* *
26168349 ATATTAAAAATTAATGTATAAAGATTAAAT
1 ATATTAAAAAGTAA-GTATAAAAATTAAAT
26168379 ATTAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 13 0.50
31 13 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
ATATTAAAAAGTAAGTATAAAAATTAAATT
Found at i:26169398 original size:262 final size:263
Alignment explanation
Indices: 26168864--26169398 Score: 777
Period size: 262 Copynumber: 2.0 Consensus size: 263
26168854 AAACGACGAA
* * **
26168864 TAAGAAAAGTAGAGAAGATCGAACACAAGTATTTTATGTGAAAAATTCCTCCAAAGAAGATAAAA
1 TAAGAAAAGCAGAGAAGATCGAACACAAATATTTTATGTGAAAAACCCCTCCAAAGAAGATAAAA
* *
26168929 TCACGGGCAAAAGAGGCTTCGACTTTTTACTAAATTAATAAACAAACGAGAATACAATACGGAAA
66 TCACGGGCAAAAGAGGATTCGACTTTTCACTAAATTAATAAACAAACGAGAATACAATACGGAAA
* * * *
26168994 AAAATAAACCTAAATGTACTAAATGTACAAACCCAAACGCCGAAAACAAAGCCCTAACTCGGGAA
131 AAAACAAACCTAAATGTACTAAATGTACAAACCCAAACGCCAAAAACAAAGCCATAACTCAGGAA
* * * * **
26169059 CAAAATTCTCTCCATAGTTATCATAAAACTCTCAGCAAAACTCATATGCGACTACATCTTGTCGC
196 CAAAATTCTCTCCATAGTTACCACAAAACTCTCACCAAAACTCATATGCGACTACATCTTATAAC
26169124 CAT
261 CAT
* *
26169127 CAAGAAAAGCAGAGAAGATCGAACACAAATATTTTATGTGGAAAACCCCTCCAAAGAAGATAAAA
1 TAAGAAAAGCAGAGAAGATCGAACACAAATATTTTATGTGAAAAACCCCTCCAAAGAAGATAAAA
* * * * * *
26169192 TCACGGGCAAAAGAGGATTCGACTTTTCATTAAATTAGTAAACAAACGTGAATATAATA-TGAAG
66 TCACGGGCAAAAGAGGATTCGACTTTTCACTAAATTAATAAACAAACGAGAATACAATACGGAAA
* * *
26169256 AAAACAAACCTAAATGTACTAAATGTACAAATCCAAAC-CCTAAAAATAAAGCCATAATTCAGGA
131 AAAACAAACCTAAATGTACTAAATGTACAAACCCAAACGCC-AAAAACAAAGCCATAACTCAGGA
* * *
26169320 ACAAAATTCTCTTCATAGTTACCACGAAACTCTCACCAAAACTCATATGCTACTACATCTTATAA
195 ACAAAATTCTCTCCATAGTTACCACAAAACTCTCACCAAAACTCATATGCGACTACATCTTATAA
26169385 CCAT
260 CCAT
26169389 TAAGAAAAGC
1 TAAGAAAAGC
26169399 CCTTATTGAT
Statistics
Matches: 240, Mismatches: 31, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
261 2 0.01
262 126 0.52
263 112 0.47
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (263 bp):
TAAGAAAAGCAGAGAAGATCGAACACAAATATTTTATGTGAAAAACCCCTCCAAAGAAGATAAAA
TCACGGGCAAAAGAGGATTCGACTTTTCACTAAATTAATAAACAAACGAGAATACAATACGGAAA
AAAACAAACCTAAATGTACTAAATGTACAAACCCAAACGCCAAAAACAAAGCCATAACTCAGGAA
CAAAATTCTCTCCATAGTTACCACAAAACTCTCACCAAAACTCATATGCGACTACATCTTATAAC
CAT
Found at i:26173916 original size:171 final size:164
Alignment explanation
Indices: 26173546--26173957 Score: 496
Period size: 171 Copynumber: 2.5 Consensus size: 164
26173536 GTTACCATCT
26173546 GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAG-GGGAGGTCTTGAGTTCGACTCTC
1 GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
* * *
26173610 AACAAGAGCAACTTGTAATTTATTTTCTCTTTTGGTGTCTGATACCTACTTTAGTTAAAGAAACT
66 AACAAGAGCAACGTGT-ATTTATATTCTCTTCTGGTGTCTGATACCTACTTTAGTTAAAGAAACT
* **
26173675 AAGTTCTTTAGGTTAATTCTATCAAATTTTTGTCAA
130 AAGTTCTTTA-GATAATTCTATCAAATTTCAGTCAA
26173711 GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
1 GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
* * * *
26173776 AACAAGAGCAAGGTGCT-TTT-TATTCTCTTCTGAGT-TCTGACGTGTAATCTACTTTAG-TCAT
66 AACAAGAGCAACGTG-TATTTATATTCTCTTCTG-GTGTCTGA----T-ACCTACTTTAGTTAAA
* * * **
26173837 GAAACTCATGGTTCTTTTA-ATAACTTTCTGTTATGCTTTCAG-CAA
124 GAAACT-A-AGTTC-TTTAGATAA--TTCTATCA-AATTTCAGTCAA
*
26173882 TGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
1 GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
26173947 AACAAGAGCAA
66 AACAAGAGCAA
26173958 ATAGTATTTT
Statistics
Matches: 217, Mismatches: 16, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
164 15 0.07
165 46 0.21
166 36 0.17
167 1 0.00
168 9 0.04
169 14 0.06
170 4 0.02
171 88 0.41
172 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (164 bp):
GGCTCTTGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGACTCTC
AACAAGAGCAACGTGTATTTATATTCTCTTCTGGTGTCTGATACCTACTTTAGTTAAAGAAACTA
AGTTCTTTAGATAATTCTATCAAATTTCAGTCAA
Found at i:26174533 original size:8 final size:8
Alignment explanation
Indices: 26174506--26174565 Score: 54
Period size: 8 Copynumber: 7.8 Consensus size: 8
26174496 CTGTTAGAGA
26174506 CTGTTAGT
1 CTGTTAGT
**
26174514 CTAATAGT
1 CTGTTAGT
26174522 -TGTTAGT
1 CTGTTAGT
26174529 CTGTTAG-
1 CTGTTAGT
*
26174536 CTGGTAGT
1 CTGTTAGT
26174544 CTGATTAG-
1 CTG-TTAGT
26174552 CTGTTAGT
1 CTGTTAGT
*
26174560 TTGTTA
1 CTGTTA
26174566 TTCAAGCAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
7 15 0.37
8 23 0.56
9 3 0.07
ACGTcount: A:0.18, C:0.10, G:0.25, T:0.47
Consensus pattern (8 bp):
CTGTTAGT
Found at i:26179611 original size:26 final size:26
Alignment explanation
Indices: 26179576--26179683 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
26179566 TGAAATGTCC
*
26179576 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
26179602 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
26179628 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
26179654 ATCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26179680 ATCA
1 ATCA
26179684 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26182668 original size:15 final size:15
Alignment explanation
Indices: 26182648--26182701 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
26182638 ATGTTAGAGT
26182648 CTGTTAGTCTAATAG
1 CTGTTAGTCTAATAG
**
26182663 CTGTTAGTCTGTTAG
1 CTGTTAGTCTAATAG
*
26182678 CTGGTAGTCTAATTAG
1 CTGTTAGTCTAA-TAG
26182694 CTGTTAGT
1 CTGTTAGT
26182702 TTATTATTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 22 0.69
16 10 0.31
ACGTcount: A:0.20, C:0.13, G:0.24, T:0.43
Consensus pattern (15 bp):
CTGTTAGTCTAATAG
Found at i:26189688 original size:12 final size:12
Alignment explanation
Indices: 26189671--26189759 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 12
26189661 AAAAATTATC
26189671 TTGTTGTTTTTT
1 TTGTTGTTTTTT
26189683 TTGTTGTTCTGGGTATT
1 TTGTTGTT-T---T-TT
26189700 TTGTTGTTGTTTT
1 TTGTTGTT-TTTT
* * *
26189713 TTGCTATTATTT
1 TTGTTGTTTTTT
* *
26189725 TTGTTGCTCTTT
1 TTGTTGTTTTTT
*
26189737 TTGTTGTTATTT
1 TTGTTGTTTTTT
26189749 TTGTTGTTTTT
1 TTGTTGTTTTT
26189760 GCTGTTTGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
12 39 0.64
13 9 0.15
14 1 0.02
16 1 0.02
17 11 0.18
ACGTcount: A:0.04, C:0.04, G:0.19, T:0.72
Consensus pattern (12 bp):
TTGTTGTTTTTT
Found at i:26189765 original size:24 final size:22
Alignment explanation
Indices: 26189703--26189759 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 22
26189693 GGGTATTTTG
*
26189703 TTGTTGTTTTTTGCTATTATTT
1 TTGTTGTTTTTTGTTATTATTT
*
26189725 TTGTTGCTCTTTTTGTTGTTATTT
1 TTGTTG-T-TTTTTGTTATTATTT
26189749 TTGTTGTTTTT
1 TTGTTGTTTTT
26189760 GCTGTTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 10 0.32
23 2 0.06
24 19 0.61
ACGTcount: A:0.05, C:0.05, G:0.16, T:0.74
Consensus pattern (22 bp):
TTGTTGTTTTTTGTTATTATTT
Done.