Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 106 of 444
Found at i:26189823 original size:23 final size:23
Alignment explanation
Indices: 26189797--26189853 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
26189787 TTTTTGTGCA
* *
26189797 TTTTTTATATTGTTTTGTTATCC
1 TTTTTAATATTGTTTCGTTATCC
* * *
26189820 TTTTTAATGTTGTTTCGTTGTCG
1 TTTTTAATATTGTTTCGTTATCC
26189843 TTTTTAATATT
1 TTTTTAATATT
26189854 ATTTGGATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.14, C:0.07, G:0.12, T:0.67
Consensus pattern (23 bp):
TTTTTAATATTGTTTCGTTATCC
Found at i:26190571 original size:15 final size:16
Alignment explanation
Indices: 26190551--26190592 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
26190541 GCTATAAATA
26190551 TAAATTTATGTTT-AT
1 TAAATTTATGTTTAAT
*
26190566 TAAATTTATATTTAAT
1 TAAATTTATGTTTAAT
*
26190582 TAAATTAATGT
1 TAAATTTATGT
26190593 GTCACTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TAAATTTATGTTTAAT
Found at i:26191938 original size:30 final size:30
Alignment explanation
Indices: 26191902--26191959 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
26191892 TTAAGTTGAG
*
26191902 CCATGAAATATTGTTGCATTTAAGCTGAAA
1 CCATGAAATATTGCTGCATTTAAGCTGAAA
26191932 CCATGAAATATTGCTGCATTTAAGCTGA
1 CCATGAAATATTGCTGCATTTAAGCTGA
26191960 TCTCATTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (30 bp):
CCATGAAATATTGCTGCATTTAAGCTGAAA
Found at i:26199146 original size:54 final size:54
Alignment explanation
Indices: 26199076--26199184 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
26199066 ATTCAGTTGT
26199076 TTCTAGCATAAGTGAAGTTGGGTTGTTAAGCTTGCATTAAAAGGTATTTTCAAG
1 TTCTAGCATAAGTGAAGTTGGGTTGTTAAGCTTGCATTAAAAGGTATTTTCAAG
* *
26199130 TTCTAGCATAAGTGAAGTTGGGTTGTTAAGCTTGTATTAAAAGGTATTTTTAAG
1 TTCTAGCATAAGTGAAGTTGGGTTGTTAAGCTTGCATTAAAAGGTATTTTCAAG
26199184 T
1 T
26199185 ACACTCGAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.39
Consensus pattern (54 bp):
TTCTAGCATAAGTGAAGTTGGGTTGTTAAGCTTGCATTAAAAGGTATTTTCAAG
Found at i:26199981 original size:2 final size:2
Alignment explanation
Indices: 26199974--26200004 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26199964 AAAACTTAAA
26199974 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26200005 AAAATTTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26201220 original size:257 final size:257
Alignment explanation
Indices: 26200778--26201244 Score: 618
Period size: 257 Copynumber: 1.8 Consensus size: 257
26200768 TTTTTTAATT
* * **
26200778 CTTTAGCCATAAATATATAACCATGATAACAACTTAACTCAAATCTTAATTATCAACAATGAAGT
1 CTTTAGCCATAAATATATAACCATAATAACAACTCAACTCAAATCTTAACCATCAACAATGAAGT
* * * *
26200843 GTGGTGTGGTGATCACTCATGAGAAAAAATAACATTTCATAGCCAATTCTTTATCTCTTTGGAGA
66 ATGGTGTGGTGATCACTCATGAAAAAAAATAACATTTCATAGCCAATTCTTTACCTCTTCGGAGA
* * * * * ** ** * *
26200908 GCCCCATAACGAGAAGGTTAGTTATTGCTGTCGACACCGAATATTGATGGAGAATATGGGCTTAC
131 CCCCCATAACGAGAAGATTAGTTATTGCTGCCGAAACAGAATACCGAAAGAGAATATGGACTTAA
*
26200973 CAACGTTGTGAGTAGTAGTAGGATAATCGATTTTTTATTTTCTCTGGAGGACTTTTTTGACC
196 CAACATTGTGAGTAGTAGTAGGATAATCGATTTTTTATTTTCTCTGGAGGACTTTTTTGACC
* *
26201035 CTTTAGCCATAAATATATAACTATAATAACAA-TCAACTCAAATCTTAACCATCAACCATG-AGA
1 CTTTAGCCATAAATATATAACCATAATAACAACTCAACTCAAATCTTAACCATCAACAATGAAG-
* * *
26201098 TATGGTGTGGTGATCACTCATGAAAAAAAATCACATTTCATGGCTAA-TCTTTTACCTCTTCGGA
65 TATGGTGTGGTGATCACTCATGAAAAAAAATAACATTTCATAGCCAATTC-TTTACCTCTTCGGA
* * *
26201162 GAACCCCCATAATGAGAAGATTAGTTATTGCTGCCGATAATAG-ATACCGAAAGAGAATATGTAC
129 G-ACCCCCATAACGAGAAGATTAGTTATTGCTGCCGA-AACAGAATACCGAAAGAGAATATGGAC
26201226 TTAACAACATTGTGAGTAG
192 TTAACAACATTGTGAGTAG
26201245 CAACAGGGCC
Statistics
Matches: 178, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
255 4 0.02
256 79 0.44
257 93 0.52
258 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (257 bp):
CTTTAGCCATAAATATATAACCATAATAACAACTCAACTCAAATCTTAACCATCAACAATGAAGT
ATGGTGTGGTGATCACTCATGAAAAAAAATAACATTTCATAGCCAATTCTTTACCTCTTCGGAGA
CCCCCATAACGAGAAGATTAGTTATTGCTGCCGAAACAGAATACCGAAAGAGAATATGGACTTAA
CAACATTGTGAGTAGTAGTAGGATAATCGATTTTTTATTTTCTCTGGAGGACTTTTTTGACC
Found at i:26202726 original size:22 final size:21
Alignment explanation
Indices: 26202668--26202727 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
26202658 TATTTTTTTT
*
26202668 AAAAAAAATTATAACAAAACTA
1 AAAAAAAATTTTAA-AAAACTA
* * *
26202690 AAGAAAAATCATTAAAAATCTCA
1 AAAAAAAAT-TTTAAAAAACT-A
26202713 AAAAAAAATTTTAAA
1 AAAAAAAATTTTAAA
26202728 CTTAAGAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAAAAAATTTTAAAAAACTA
Found at i:26202886 original size:9 final size:9
Alignment explanation
Indices: 26202872--26202897 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26202862 TGTTTCTTAG
26202872 GAAATTTTA
1 GAAATTTTA
26202881 GAAATTTTA
1 GAAATTTTA
26202890 GAAATTTT
1 GAAATTTT
26202898 TATGGTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (9 bp):
GAAATTTTA
Found at i:26202995 original size:18 final size:18
Alignment explanation
Indices: 26202972--26203006 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26202962 AAAAAGAAAA
26202972 TTAAAAAAAATAAAATTC
1 TTAAAAAAAATAAAATTC
**
26202990 TTAAAAATTATAAAATT
1 TTAAAAAAAATAAAATT
26203007 TTCTAAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TTAAAAAAAATAAAATTC
Found at i:26203948 original size:18 final size:19
Alignment explanation
Indices: 26203922--26203960 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26203912 TAAGCAAGTT
*
26203922 TTGATAAAC-TCTATATAA
1 TTGAGAAACTTCTATATAA
26203940 TTGAGAAACTTCTATATAA
1 TTGAGAAACTTCTATATAA
26203959 TT
1 TT
26203961 AGTACCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (19 bp):
TTGAGAAACTTCTATATAA
Found at i:26207348 original size:15 final size:15
Alignment explanation
Indices: 26207331--26207360 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
26207321 ATTTTAAATA
26207331 TTTACATATTATATAT
1 TTTACAT-TTATATAT
26207347 TTTACATTTATATA
1 TTTACATTTATATA
26207361 CATTATGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTACATTTATATAT
Found at i:26207592 original size:25 final size:27
Alignment explanation
Indices: 26207564--26207621 Score: 84
Period size: 25 Copynumber: 2.2 Consensus size: 27
26207554 AAATACTTTC
26207564 ATTATTTATTGCAAACCTTTT-ATT-T
1 ATTATTTATTGCAAACCTTTTCATTAT
* *
26207589 ATTATTTATTTCAAGCCTTTTCATTAT
1 ATTATTTATTGCAAACCTTTTCATTAT
26207616 ATTATT
1 ATTATT
26207622 ATTTCGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 19 0.66
26 3 0.10
27 7 0.24
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (27 bp):
ATTATTTATTGCAAACCTTTTCATTAT
Found at i:26220348 original size:73 final size:73
Alignment explanation
Indices: 26220115--26220685 Score: 748
Period size: 73 Copynumber: 7.5 Consensus size: 73
26220105 TCTGTTTCAA
* **
26220115 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
26220180 TGCTTTTC
66 TGTTTTTC
* *
26220188 AAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 -A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--
*
26220253 CCTGTTCAATTTATATTTTTC
62 --T-TTC------TGTTTTTC
*
26220274 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
26220339 TGTTTTTC
66 TGTTTTTC
*
26220347 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
26220412 TGTTTTTTC
66 TG-TTTTTC
** * * *
26220421 AAAAAGATCAACTCACGTTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAA
1 -AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAA
26220486 TTTCTGTATTTTC
62 TTTCTGT-TTTTC
* *
26220499 AAAAAGATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 -AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
26220564 TCTGTTTTTC
64 TCTGTTTTTC
* *
26220574 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT--
*
26220639 T-TTTTTTTC
64 TCTGTTTTTC
*
26220648 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
26220686 GGGTCACATG
Statistics
Matches: 452, Mismatches: 25, Indels: 40
0.87 0.05 0.08
Matches are distributed among these distances:
73 127 0.28
74 54 0.12
75 69 0.15
76 58 0.13
77 1 0.00
78 71 0.16
79 4 0.01
80 4 0.01
84 57 0.13
85 1 0.00
86 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:26220573 original size:227 final size:228
Alignment explanation
Indices: 26220115--26220710 Score: 857
Period size: 227 Copynumber: 2.6 Consensus size: 228
26220105 TCTGTTTCAA
* **
26220115 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* ** *
26220180 TG-CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGTTGAGG
66 TGTTTTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAGG
*
26220242 TATTTTCAATTCCTGTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
130 TATTTTCAATTCCTGTT-AATTTATA----T-AAAAATCAACTCACATTGCGAGAGGTGAGTTGA
26220307 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC
189 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC
*
26220347 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
** * *
26220412 TGTTTTTTCAAAAAGATCAACTCACGTTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGG
66 TGTTTTTTCAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAGG
*
26220477 TATTTTCAATTTCTG-T-ATTT-TCA-AAAAGATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
130 TATTTTCAATTCCTGTTAATTTAT-ATAAAA-ATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
26220538 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC
193 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC
* * **
26220574 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
26220639 TTTTTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGT
66 TGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAGGT
26220703 ATTTTCAA
131 ATTTTCAA
26220711 AATCTATGAG
Statistics
Matches: 332, Mismatches: 26, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
225 53 0.16
226 8 0.02
227 136 0.41
231 1 0.00
232 71 0.21
233 39 0.12
234 1 0.00
235 23 0.07
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (228 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGTCGAGGT
ATTTTCAATTCCTGTTAATTTATATAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAG
GACACGCTGAGGTAATTTCAATTTCTGTTTTTC
Found at i:26220732 original size:39 final size:39
Alignment explanation
Indices: 26220678--26220755 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
26220668 AGAGGTGAGT
26220678 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
1 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
26220717 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
1 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
26220756 CTTTTCAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (39 bp):
TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTA
Found at i:26222879 original size:15 final size:15
Alignment explanation
Indices: 26222862--26222891 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
26222852 ATTTTAAATA
26222862 TTTACATATTATATAT
1 TTTACAT-TTATATAT
26222878 TTTACATTTATATA
1 TTTACATTTATATA
26222892 CATTATGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTACATTTATATAT
Found at i:26223123 original size:25 final size:27
Alignment explanation
Indices: 26223095--26223152 Score: 84
Period size: 25 Copynumber: 2.2 Consensus size: 27
26223085 AAATACTTTC
26223095 ATTATTTATTGCAAACCTTTT-ATT-T
1 ATTATTTATTGCAAACCTTTTCATTAT
* *
26223120 ATTATTTATTTCAAGCCTTTTCATTAT
1 ATTATTTATTGCAAACCTTTTCATTAT
26223147 ATTATT
1 ATTATT
26223153 ATTTCGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 19 0.66
26 3 0.10
27 7 0.24
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (27 bp):
ATTATTTATTGCAAACCTTTTCATTAT
Found at i:26225167 original size:3 final size:3
Alignment explanation
Indices: 26225161--26225216 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
26225151 TTTTTGCTTA
26225161 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26225209 AAT AAT AA
1 AAT AAT AA
26225217 ACTAACACAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26226136 original size:20 final size:20
Alignment explanation
Indices: 26226100--26226137 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26226090 TTTATTAGGT
*
26226100 AAATATTTTGGAGAATTTCA
1 AAATATTTTGGAAAATTTCA
26226120 AAAT-TTTTGGATAAATTT
1 AAATATTTTGGA-AAATTT
26226138 AAGAGGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
AAATATTTTGGAAAATTTCA
Found at i:26237623 original size:45 final size:45
Alignment explanation
Indices: 26237574--26237663 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
26237564 TGCAGAGAAC
* *
26237574 GACAAAAAAGAATGTTAGAACGAAGAGAAGTTTTTAGGAAGCAAA
1 GACAAAAAAGAATGTTAGAAAGAAGAGAAGTTTTTAGGAAACAAA
* * *
26237619 GACAAAAAAGAATGTTAGAAAGAATAGAGGTTTTTGGGAAACAAA
1 GACAAAAAAGAATGTTAGAAAGAAGAGAAGTTTTTAGGAAACAAA
26237664 ATAAAATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.51, C:0.06, G:0.24, T:0.19
Consensus pattern (45 bp):
GACAAAAAAGAATGTTAGAAAGAAGAGAAGTTTTTAGGAAACAAA
Found at i:26243445 original size:26 final size:26
Alignment explanation
Indices: 26243395--26243445 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26243385 TTGATAGCTT
* * *
26243395 AATGTTATAATTACATGCTGTTATGA
1 AATGTTATAATTAAATGATGCTATGA
*
26243421 AATGTTATAATTAAATTATGCTATG
1 AATGTTATAATTAAATGATGCTATG
26243446 GCCGAATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (26 bp):
AATGTTATAATTAAATGATGCTATGA
Found at i:26245031 original size:44 final size:44
Alignment explanation
Indices: 26244977--26245065 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
26244967 GAGCGGTCTT
*
26244977 GTACTTCTGATGAATGTTTAAAATGTGTTATATCCTTGCTTCGA
1 GTACTCCTGATGAATGTTTAAAATGTGTTATATCCTTGCTTCGA
26245021 GTACTCCTGATGAATGTTTAAAATGTGTTATATCCTTGCTTCGA
1 GTACTCCTGATGAATGTTTAAAATGTGTTATATCCTTGCTTCGA
26245065 G
1 G
26245066 ACACATCATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (44 bp):
GTACTCCTGATGAATGTTTAAAATGTGTTATATCCTTGCTTCGA
Found at i:26250373 original size:26 final size:26
Alignment explanation
Indices: 26250323--26250373 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26250313 TTGATAGCTT
* * *
26250323 AATGTTATAATTACATGCTGTTATGA
1 AATGTTATAATTAAATGATGCTATGA
*
26250349 AATGTTATAATTAAATTATGCTATG
1 AATGTTATAATTAAATGATGCTATG
26250374 GCTGAATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (26 bp):
AATGTTATAATTAAATGATGCTATGA
Found at i:26253021 original size:19 final size:19
Alignment explanation
Indices: 26252997--26253035 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26252987 AGAGAGGAGA
*
26252997 GAGTTTTCGTAAACTGAGT
1 GAGTTTTCGAAAACTGAGT
*
26253016 GAGTTTTCGAAAACTTAGT
1 GAGTTTTCGAAAACTGAGT
26253035 G
1 G
26253036 TGTAATCCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (19 bp):
GAGTTTTCGAAAACTGAGT
Found at i:26255761 original size:18 final size:18
Alignment explanation
Indices: 26255740--26255776 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26255730 TGAGTTTTCG
*
26255740 AATTAGAATAACTCGAAT
1 AATTAGAATAAATCGAAT
*
26255758 AATTTGAATAAATCGAAT
1 AATTAGAATAAATCGAAT
26255776 A
1 A
26255777 GTAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (18 bp):
AATTAGAATAAATCGAAT
Found at i:26259393 original size:85 final size:84
Alignment explanation
Indices: 26259250--26259505 Score: 277
Period size: 85 Copynumber: 3.0 Consensus size: 84
26259240 CATATGTCGT
* * * * *
26259250 ACAATGCCATATCCC-GAATATGATCTTACATGTAATCTCATATCGAAGCCAATAGCCCAGCTAT
1 ACAATGCCATGTCCCAG-ACATGGTCTTACACGTAATATCATATCGAAGCC-ATAGCCCAGCTAT
26259314 GGTCTTACATGAAATCTCATA
64 GGTCTTACATGAAATCTCATA
*
26259335 ACAATGCCATGTCCCAGACATGGTCTTATACGTAATATCATATCGATA-CCAGTAGCCCAGCTAT
1 ACAATGCCATGTCCCAGACATGGTCTTACACGTAATATCATATCGA-AGCCA-TAGCCCAGCTAT
* * *
26259399 GGTCTTACACGGAATCTCGTA
64 GGTCTTACATGAAATCTCATA
* ** * * * *
26259420 TCGGTGCCATGTCCCAGATATGGTCTTACATGAAATATCATATCAAAGCCAT-GTCCCAGAC-AT
1 ACAATGCCATGTCCCAGACATGGTCTTACACGTAATATCATATCGAAGCCATAG-CCCAG-CTAT
*
26259483 GGTCTTACATGAAGTCTCATA
64 GGTCTTACATGAAATCTCATA
26259504 AC
1 AC
26259506 GGTGCCGATG
Statistics
Matches: 143, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
83 1 0.01
84 28 0.20
85 112 0.78
86 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (84 bp):
ACAATGCCATGTCCCAGACATGGTCTTACACGTAATATCATATCGAAGCCATAGCCCAGCTATGG
TCTTACATGAAATCTCATA
Found at i:26259492 original size:42 final size:42
Alignment explanation
Indices: 26259273--26259503 Score: 202
Period size: 42 Copynumber: 5.5 Consensus size: 42
26259263 CCGAATATGA
* *
26259273 TCTTACATGTAATCTCATATCGAAGCCAATAG-CCCAG-CTATGG
1 TCTTACATGAAATCTCATATCAAAGCC-AT-GTCCCAGAC-ATGG
* *
26259316 TCTTACATGAAATCTCATAACAATGCCATGTCCCAGACATGG
1 TCTTACATGAAATCTCATATCAAAGCCATGTCCCAGACATGG
* * * * *
26259358 TCTTATACGTAATATCATATCGATA-CCA-GTAGCCCAG-CTATGG
1 TCTTACATGAAATCTCATATC-AAAGCCATGT--CCCAGAC-ATGG
* * * *** *
26259401 TCTTACACGGAATCTCGTATCGGTGCCATGTCCCAGATATGG
1 TCTTACATGAAATCTCATATCAAAGCCATGTCCCAGACATGG
*
26259443 TCTTACATGAAATATCATATCAAAGCCATGTCCCAGACATGG
1 TCTTACATGAAATCTCATATCAAAGCCATGTCCCAGACATGG
*
26259485 TCTTACATGAAGTCTCATA
1 TCTTACATGAAATCTCATA
26259504 ACGGTGCCGA
Statistics
Matches: 150, Mismatches: 29, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
41 3 0.02
42 91 0.61
43 54 0.36
44 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
TCTTACATGAAATCTCATATCAAAGCCATGTCCCAGACATGG
Found at i:26259581 original size:48 final size:48
Alignment explanation
Indices: 26259473--26259668 Score: 207
Period size: 48 Copynumber: 4.1 Consensus size: 48
26259463 CAAAGCCATG
* * ** * * * *
26259473 TCCCAGACATGGTCTTACAT-GAAGTCTCATAACGGTGCCGATGCCATG
1 TCCCAGATATGGTCTTACATGGGA-TCTCATATTGATGCCAATGTCATA
* * * * * *
26259521 TCCTAGACATGGTCTTATACGGGACCTCATATTAATGCCAATGTCATA
1 TCCCAGATATGGTCTTACATGGGATCTCATATTGATGCCAATGTCATA
*
26259569 TCCCTGATATGGTCTTACATGGGATCTCAT-TTCGATGCCAATGTCATA
1 TCCCAGATATGGTCTTACATGGGATCTCATATT-GATGCCAATGTCATA
* *
26259617 TCCCAGATATGGTCTTACATGGGATTTCATATTGATGCCGATGTCATA
1 TCCCAGATATGGTCTTACATGGGATCTCATATTGATGCCAATGTCATA
26259665 TCCC
1 TCCC
26259669 GGATTTCATA
Statistics
Matches: 123, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
47 2 0.02
48 117 0.95
49 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (48 bp):
TCCCAGATATGGTCTTACATGGGATCTCATATTGATGCCAATGTCATA
Found at i:26259665 original size:17 final size:17
Alignment explanation
Indices: 26259643--26259727 Score: 60
Period size: 17 Copynumber: 5.4 Consensus size: 17
26259633 ACATGGGATT
26259643 TCATATTGATGCCGATG
1 TCATATTGATGCCGATG
* *
26259660 TC--A-T-ATCCCGGATT
1 TCATATTGATGCC-GATG
26259674 TCATATTGATGCCGATG
1 TCATATTGATGCCGATG
* *
26259691 TC--A-T-ATCCCGGATT
1 TCATATTGATGCC-GATG
26259705 TCATATTGATGCCGATG
1 TCATATTGATGCCGATG
26259722 TCATAT
1 TCATAT
26259728 CCCAGATATG
Statistics
Matches: 50, Mismatches: 8, Indels: 20
0.64 0.10 0.26
Matches are distributed among these distances:
13 8 0.16
14 12 0.24
15 2 0.04
16 2 0.04
17 18 0.36
18 8 0.16
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (17 bp):
TCATATTGATGCCGATG
Found at i:26259673 original size:31 final size:31
Alignment explanation
Indices: 26259638--26259730 Score: 186
Period size: 31 Copynumber: 3.0 Consensus size: 31
26259628 GTCTTACATG
26259638 GGATTTCATATTGATGCCGATGTCATATCCC
1 GGATTTCATATTGATGCCGATGTCATATCCC
26259669 GGATTTCATATTGATGCCGATGTCATATCCC
1 GGATTTCATATTGATGCCGATGTCATATCCC
26259700 GGATTTCATATTGATGCCGATGTCATATCCC
1 GGATTTCATATTGATGCCGATGTCATATCCC
26259731 AGATATGGTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (31 bp):
GGATTTCATATTGATGCCGATGTCATATCCC
Found at i:26269733 original size:20 final size:20
Alignment explanation
Indices: 26269695--26269733 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26269685 CTTTTAATTA
* * *
26269695 CTTAATTAATTTAATTTAAC
1 CTTAAATAATTAAACTTAAC
26269715 CTTAAATAATTAAACTTAA
1 CTTAAATAATTAAACTTAA
26269734 TCACCATCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (20 bp):
CTTAAATAATTAAACTTAAC
Found at i:26276568 original size:13 final size:13
Alignment explanation
Indices: 26276548--26276580 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
26276538 AAGTATAATA
26276548 AAAATAAGAAAAC
1 AAAATAAGAAAAC
*
26276561 AGAATAAGAAAAC
1 AAAATAAGAAAAC
26276574 AAAATAA
1 AAAATAA
26276581 TAAATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.76, C:0.06, G:0.09, T:0.09
Consensus pattern (13 bp):
AAAATAAGAAAAC
Found at i:26276620 original size:20 final size:19
Alignment explanation
Indices: 26276582--26276620 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
26276572 ACAAAATAAT
*
26276582 AAATATAATAAAAATTAAC
1 AAATATAATAAAAAGTAAC
*
26276601 AAATAATAATAATAAGTAAC
1 AAAT-ATAATAAAAAGTAAC
26276621 TAAAAGAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AAATATAATAAAAAGTAAC
Found at i:26276794 original size:43 final size:42
Alignment explanation
Indices: 26276759--26276846 Score: 106
Period size: 44 Copynumber: 2.1 Consensus size: 42
26276749 AGAGTGTGAC
26276759 GGGGTGA-CTATTTTGGGGAAGGGAAAGAAAGGAAGAGGAGA
1 GGGGTGAGCTATTTTGGGGAAGGGAAAGAAAGGAAGAGGAGA
* * * * *
26276800 GGGGTGACGGCTGTTTTGGGGAAGGGAAATAAGGGAAAAGGTGA
1 GGGGTGA--GCTATTTTGGGGAAGGGAAAGAAAGGAAGAGGAGA
26276844 GGG
1 GGG
26276847 AAAGGGAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 7 0.18
44 32 0.82
ACGTcount: A:0.32, C:0.03, G:0.49, T:0.16
Consensus pattern (42 bp):
GGGGTGAGCTATTTTGGGGAAGGGAAAGAAAGGAAGAGGAGA
Found at i:26290770 original size:42 final size:42
Alignment explanation
Indices: 26290652--26290771 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
26290642 TGTTATCATG
* *
26290652 TAAGACCTTATCTGGGATATGGCGT-TGATATGAGATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCT-ATATGAGATTTCGTA
** * * * * * *
26290694 TAAGACCACGTTTGGGACATCGTATCAAAATGAGATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTA
*
26290736 TAAGACCATATCTGGGATATGGCATCTATGTGAGAT
1 TAAGACCATATCTGGGATATGGCATCTATATGAGAT
26290772 CCCATGTAAG
Statistics
Matches: 58, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTA
Found at i:26304713 original size:26 final size:25
Alignment explanation
Indices: 26304683--26304731 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
26304673 GGGCATGGAA
26304683 TAATTATTTTTAT-AATTTATATATTT
1 TAATTATTTTT-TGAA-TTATATATTT
26304709 TAATTATTTTTTGAATTATATAT
1 TAATTATTTTTTGAATTATATAT
26304732 GTTATATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TAATTATTTTTTGAATTATATATTT
Found at i:26305529 original size:20 final size:20
Alignment explanation
Indices: 26305500--26305538 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26305490 ATTAATCATA
*
26305500 TTTTATTAAATAAAATTATT
1 TTTTAATAAATAAAATTATT
*
26305520 TTTTAATAAATAGAATTAT
1 TTTTAATAAATAAAATTAT
26305539 ATTAGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTTAATAAATAAAATTATT
Found at i:26307060 original size:11 final size:10
Alignment explanation
Indices: 26307038--26307071 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26307028 AAAATTACTT
26307038 AATTTTTTAA
1 AATTTTTTAA
26307048 AATTTTTTAA
1 AATTTTTTAA
* *
26307058 AAATTTTAAA
1 AATTTTTTAA
26307068 AATT
1 AATT
26307072 ATATTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:26327856 original size:4 final size:4
Alignment explanation
Indices: 26327849--26327875 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26327839 TATATATATA
26327849 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
26327876 TTTTTCCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:26329719 original size:42 final size:43
Alignment explanation
Indices: 26329660--26329776 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
26329650 TAGAGTTAGT
*
26329660 TGAGATTACGTGTAAGACCATATCTGGGATAT-TGCA-TCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATCGGCACT-GATA
* *
26329702 TGAGATTTCGTGTAAGACCATAGT-TGGGCTATCGGCACTGATA
1 TGAGATTACGTGTAAGACCATA-TCTGGGATATCGGCACTGATA
** ** *
26329745 CAAGATGCCATGTAAGACCATATCTGGGATAT
1 TGAGATTACGTGTAAGACCATATCTGGGATAT
26329777 GGTATTGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.47
43 32 0.52
44 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATCGGCACTGATA
Found at i:26329892 original size:20 final size:20
Alignment explanation
Indices: 26329867--26329905 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26329857 CAATGTTTAA
26329867 GTTGTGAAAGACTATGGTAT
1 GTTGTGAAAGACTATGGTAT
*
26329887 GTTGTGAAAGATTATGGTA
1 GTTGTGAAAGACTATGGTA
26329906 AGTTACAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.36
Consensus pattern (20 bp):
GTTGTGAAAGACTATGGTAT
Found at i:26332570 original size:32 final size:32
Alignment explanation
Indices: 26332502--26332582 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
26332492 TGAAATTAGT
* *
26332502 TTGTTGGATTTTGAAATTATTATGACTTGAAT
1 TTGTTGGATATTGAAATTATTATGACTTGAAC
* * *
26332534 TTGTTAGATATTGAAATTATTATG-TTTTAAGC
1 TTGTTGGATATTGAAATTATTATGACTTGAA-C
26332566 TTGTTGGATATTGAAAT
1 TTGTTGGATATTGAAAT
26332583 GATTGACAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 4 0.10
32 38 0.90
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.49
Consensus pattern (32 bp):
TTGTTGGATATTGAAATTATTATGACTTGAAC
Found at i:26334205 original size:15 final size:16
Alignment explanation
Indices: 26334185--26334222 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26334175 TTTAAAAATC
*
26334185 AAATAAA-TTGATTAA
1 AAATAAATTTAATTAA
*
26334200 AAATAAATTTAATTAG
1 AAATAAATTTAATTAA
26334216 AAATAAA
1 AAATAAA
26334223 AATAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
AAATAAATTTAATTAA
Found at i:26334213 original size:20 final size:22
Alignment explanation
Indices: 26334176--26334229 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
26334166 TATAAGATGT
26334176 TTAAAAATCAAA-TAAATT-G-A
1 TTAAAAAT-AAATTAAATTAGAA
*
26334196 TTAAAAATAAATTTAATTAGAA
1 TTAAAAATAAATTAAATTAGAA
*
26334218 ATAAAAATAAAT
1 TTAAAAATAAAT
26334230 CAATTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 13 0.45
21 1 0.03
22 12 0.41
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
TTAAAAATAAATTAAATTAGAA
Found at i:26335315 original size:20 final size:22
Alignment explanation
Indices: 26335273--26335330 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 22
26335263 CTTCAATCTT
26335273 TCAATATTCTCTC-AATTTCCTC
1 TCAA-ATTCTCTCAAATTTCCTC
26335295 TCAAA-TCTCTCAAATTT-CTC
1 TCAAATTCTCTCAAATTTCCTC
*
26335315 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
26335331 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 13 0.41
21 7 0.22
22 12 0.38
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (22 bp):
TCAAATTCTCTCAAATTTCCTC
Found at i:26337076 original size:29 final size:30
Alignment explanation
Indices: 26337012--26337076 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
26337002 CGACGACGCA
*
26337012 GGCCCATCAACAGCGCTCACACAATCACCC
1 GGCCCAGCAACAGCGCTCACACAATCACCC
* * *
26337042 GACCCAGCAACAG-GACT-ACACAGTCACCG
1 GGCCCAGCAACAGCG-CTCACACAATCACCC
26337071 GGCCCA
1 GGCCCA
26337077 ACAGTTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.31, C:0.43, G:0.18, T:0.08
Consensus pattern (30 bp):
GGCCCAGCAACAGCGCTCACACAATCACCC
Found at i:26337153 original size:18 final size:18
Alignment explanation
Indices: 26337130--26337172 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
26337120 TGCCAGGTAC
*
26337130 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
26337148 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
26337166 GTTTCCT
1 GTATCCT
26337173 TTTTCTAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:26337644 original size:61 final size:60
Alignment explanation
Indices: 26337571--26337757 Score: 158
Period size: 62 Copynumber: 3.1 Consensus size: 60
26337561 ATTTTGAATC
26337571 TTTTTATATTTTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTGTAATTTACT
1 TTTTTAT-TTTTTCATGTAATTAGATAAAA-GTTGTTTTAAATAAAGTAATTGTAATTTACT
* * * * * *
26337633 TTTTTATTTTTT-A-ATAA--A-ATGGAAA-TTATTTTAAATAAGGCAACATTTTGAA--TA-T
1 TTTTTATTTTTTCATGTAATTAGAT-AAAAGTTGTTTTAAATAAAG-TA-ATTGT-AATTTACT
* *
26337688 TTTTATATTATTTCATGTAATTAGATAAAAGACTGTTTTAAATAAAGTAATTGTAATTTACT
1 TTTT-TATTTTTTCATGTAATTAGATAAAAG-TTGTTTTAAATAAAGTAATTGTAATTTACT
*
26337750 TTTATATT
1 TTTTTATT
26337758 GTTAATAAAA
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
55 18 0.19
56 12 0.13
57 9 0.09
58 5 0.05
59 5 0.05
60 9 0.09
61 14 0.15
62 23 0.24
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (60 bp):
TTTTTATTTTTTCATGTAATTAGATAAAAGTTGTTTTAAATAAAGTAATTGTAATTTACT
Found at i:26337783 original size:116 final size:116
Alignment explanation
Indices: 26337558--26337925 Score: 603
Period size: 116 Copynumber: 3.2 Consensus size: 116
26337548 TATTTGTACA
*
26337558 AACATTTTGAATCTTTTTATATT-TTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
26337622 TGTAATTTACTTTTTTATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
**
26337674 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGACTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
26337739 TGTAATTTACTTTTATATTGTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * *
26337790 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * *
26337855 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
26337906 AATATTTTGAATATTATTAT
1 AACATTTTGAATATTTTTAT
26337926 TTCATGTAAT
Statistics
Matches: 235, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
116 180 0.77
117 55 0.23
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:26341181 original size:126 final size:126
Alignment explanation
Indices: 26340950--26341486 Score: 841
Period size: 126 Copynumber: 4.3 Consensus size: 126
26340940 GCCCAAGTTA
* * *
26340950 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
***
26341015 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * *
26341076 TTTCAGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTC-TTCTAGTAATTTTGCTGAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTC-AGTACTTTTGCTGAAA
* *
26341140 ATGTATCCTGCTTGAAACGTTTTT-ACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
65 ATGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* *
26341202 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCATGTGGAAGCTTCTTTCAGTACTTTTGCT-AACA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAA-A
*
26341266 ATGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACAC-T-TTCTCAAAATTATTT
65 ATGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * *
26341326 TTTCAGATACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
26341391 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
26341452 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
26341487 AAAAGCTTTT
Statistics
Matches: 377, Mismatches: 26, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
124 114 0.30
125 9 0.02
126 250 0.66
127 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:26341422 original size:250 final size:252
Alignment explanation
Indices: 26340950--26341486 Score: 841
Period size: 250 Copynumber: 2.1 Consensus size: 252
26340940 GCCCAAGTTA
* * *
26340950 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTACTGAAAA
**
26341015 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
* *
26341080 AGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCTAGTAATTTTGCTGAAAATGTA
131 AGAGACCACTGTAGCAAAAGAACATCCACGTGGGAGCTTCTTCTAGTAATTTTGCTGAAAATGCA
26341145 TCCTGCTTGAAACGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
196 TCCTGCTTGAAACGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* *
26341202 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCATGTGGAAGCTTCTTTCAGTACTTTTGCT-AACA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTACTGAA-A
* *
26341266 ATGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACAC-T-TTCTCAAAATTATTTTTT
65 ATGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTT
* * * * *
26341329 CAGATACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTCTT-TCAGTACTTTTGCTGACAATG
130 CAGAGACCACTGTAGCAAAAGAACATCCACGTGGGAGCTTCTTCT-AGTAATTTTGCTGAAAATG
* * *
26341393 CATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
194 CATCCTGCTTGAAACGTTTTT-ACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
26341452 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
26341487 AAAAGCTTTT
Statistics
Matches: 262, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
249 1 0.00
250 161 0.61
251 4 0.02
252 96 0.37
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (252 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTACTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
AGAGACCACTGTAGCAAAAGAACATCCACGTGGGAGCTTCTTCTAGTAATTTTGCTGAAAATGCA
TCCTGCTTGAAACGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:26341787 original size:15 final size:16
Alignment explanation
Indices: 26341769--26341810 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
26341759 TTTTTTCCTT
26341769 AAAACCCTAAAATTTA
1 AAAACCCTAAAATTTA
* *
26341785 AAAATCC-AAAATTCTC
1 AAAACCCTAAAATT-TA
26341801 AAAACCCTAA
1 AAAACCCTAA
26341811 CCCTAATTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 6 0.29
16 13 0.62
17 2 0.10
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAACCCTAAAATTTA
Found at i:26342216 original size:2 final size:2
Alignment explanation
Indices: 26342209--26342251 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
26342199 TCTTTTATTT
26342209 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26342251 T
1 T
26342252 TCATAATTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26343201 original size:311 final size:307
Alignment explanation
Indices: 26342563--26343403 Score: 1247
Period size: 311 Copynumber: 2.7 Consensus size: 307
26342553 CGGATTTTTT
* *
26342563 TACTTAAATAATA-T-AAAAATAAAATACGAAAATAGTTTATTTTTAAAAAATAAAATAC-GAAA
1 TACTAAAATAATATTAAAAAATAAAATACGAAAATAGTATA-TTTTAAAAAATAAAAT-CTGAAA
* * * *
26342625 ATAAAA-AAAATAAGAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACT
64 ATAAAATAAAATAAAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACT
* * *
26342689 AAAATAATATATTTGAAACATTATATACTAAAATAATATAAAAATAAAATACGAAAATAGGATAT
129 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGCATAT
* *
26342754 TTTAAAAAATAAAATCCAAAAATAGAATAAATAATAAAAACAAAGGGCCAAAATCAGAGTTTTTT
194 TTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAGAGTTTTTT
26342819 TACTAAATTAATATAAAAACACGAAAAATAATACATTTGAAACATTATG
259 TACTAAATTAATATAAAAACACGAAAAATAATACATTTGAAACATTATG
* * * *
26342868 TACTAAAATATTATAAAAAAAATAAAATACGAAAATAGTATAATTTAAAAAATAAAATCTAAAAA
1 TACTAAAATAATAT-TAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAA
* ** *
26342933 TAAAATAAAATAAAATAAAAACAACCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAATACT
65 TAAAATAAAATAAAA-ACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACT
26342998 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATAC-AGAAATAGCA
129 AAAATAATACATTTGAAACATTATGTACTAAAATAATAT--AAAAATAAAATACGA-AAATAGCA
26343062 TATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAA-CTAGAG-T
191 TATTTTAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATC-AGAGTT
*
26343125 TTTTTACTAAATTAATATAAAAAAAACAC-TAAAATAATACATTTGAAACATTATG
255 TTTTTACTAAATTAATAT---AAAAACACGAAAAATAATACATTTGAAACATTATG
* *
26343180 TATTAAAATAATATTAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAAT-TCGAAAA
1 TACTAAAATAATATTAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCT-GAAAA
* *
26343244 TAAAAT-AAA-AAAAACAAACGGCCAAAATTAGAGTTTTTTACTAAATTAACATTAAAAAAAACT
65 TAAAATAAAATAAAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATA-TAAAAAAAACT
*
26343307 AAAATAATACATTTGAAACATTA-GTACTAAAATAATATAAAAATAAAATACGAAAATAGTATAT
129 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGCATAT
*
26343371 TTTAAAAAATAAAATCTGAAAATAAAATAAATA
194 TTTAAAAAATAAAATCCGAAAATAAAATAAATA
26343404 CCAAAATATA
Statistics
Matches: 487, Mismatches: 33, Indels: 31
0.88 0.06 0.06
Matches are distributed among these distances:
305 11 0.02
306 56 0.11
307 25 0.05
308 80 0.16
309 117 0.24
310 25 0.05
311 128 0.26
312 37 0.08
313 8 0.02
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (307 bp):
TACTAAAATAATATTAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAAT
AAAATAAAATAAAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAAACTAA
AATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAGCATATTT
TAAAAAATAAAATCCGAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAGAGTTTTTTTA
CTAAATTAATATAAAAACACGAAAAATAATACATTTGAAACATTATG
Found at i:26343205 original size:157 final size:152
Alignment explanation
Indices: 26342563--26343403 Score: 1170
Period size: 157 Copynumber: 5.5 Consensus size: 152
26342553 CGGATTTTTT
* * *
26342563 TACTTAAATAATATAAAAATAAAATACGAAAATAGTTTATTTTTAAAAAATAAAATACGAAAAT-
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATA-TTTTAAAAAATAAAATCCGAAAATA
* *
26342627 AAA-AAA-AATAAGAACAAAGGGCCAAAACCAGAGTTTTTTACTAAATTAATATAAAAAACACTA
65 AAATAAATAATAAAAACAAAGGGCCAAAA-TAGAGTTTTTTACTAAATTAATATAAAAAACACTA
* *
26342690 AAATAATATATTTGAAACATTATA
129 AAATAATACATTTGAAACATTATG
* * *
26342714 TACTAAAATAATATAAAAATAAAATACGAAAATAGGATATTTTAAAAAATAAAATCCAAAAATAG
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
*
26342779 AATAAATAATAAAAACAAAGGGCCAAAATCAGAGTTTTTTTACTAAATTAATAT-AAAAACACGA
66 AATAAATAATAAAAACAAAGGGCCAAAAT-AGAG-TTTTTTACTAAATTAATATAAAAAACAC-T
26342843 AAAATAATACATTTGAAACATTATG
128 AAAATAATACATTTGAAACATTATG
* * **
26342868 TACTAAAATATTATAAAAAAAATAAAATACGAAAATAGTATAATTTAAAAAATAAAATCTAAAAA
1 TACTAAAATA--AT-ATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAA
26342933 TAAAATAAAATAAAATAAAAAC-AA---CCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
63 TAAAAT-AAAT--AATAAAAACAAAGGGCCAAAAT-AGAGTTTTTTACTAAATTAATATAAAAAA
*
26342994 TACTAAAATAATACATTTGAAACATTATG
124 CACTAAAATAATACATTTGAAACATTATG
*
26343023 TACTAAAATAATATAAAAAAATAAAATAC-AGAAATAGCATATTTTAAAAAATAAAATCCGAAAA
1 TACTAAAATAATAT--AAAAATAAAATACGA-AAATAGTATATTTTAAAAAATAAAATCCGAAAA
26343087 TAAAATAAATAATAAAAACAAAGGGCCAAAACTAGAGTTTTTTACTAAATTAATATAAAAAAAAC
63 TAAAATAAATAATAAAAACAAAGGGCCAAAA-TAGAGTTTTTTACTAAATTAATAT--AAAAAAC
26343152 ACTAAAATAATACATTTGAAACATTATG
125 ACTAAAATAATACATTTGAAACATTATG
* * *
26343180 TATTAAAATAATATTAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATTCGAAAAT
1 TACTAAAATAATA-T-AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAAT
* * *
26343245 AAAAT--A-AA-AAAAACAAACGGCCAAAATTAGAGTTTTTTACTAAATTAACATTAAAAAAAAC
64 AAAATAAATAATAAAAACAAAGGGCCAAAA-TAGAGTTTTTTACTAAATTAATA-TAAAAAACAC
26343306 TAAAATAATACATTTGAAACATTA-G
127 TAAAATAATACATTTGAAACATTATG
*
26343331 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
26343396 AATAAATA
66 AATAAATA
26343404 CCAAAATATA
Statistics
Matches: 626, Mismatches: 35, Indels: 57
0.87 0.05 0.08
Matches are distributed among these distances:
149 51 0.08
150 23 0.04
151 61 0.10
152 39 0.06
153 78 0.12
154 103 0.16
155 84 0.13
156 22 0.04
157 148 0.24
158 6 0.01
159 2 0.00
160 9 0.01
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (152 bp):
TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
AATAAATAATAAAAACAAAGGGCCAAAATAGAGTTTTTTACTAAATTAATATAAAAAACACTAAA
ATAATACATTTGAAACATTATG
Found at i:26349971 original size:17 final size:17
Alignment explanation
Indices: 26349949--26349982 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26349939 AATATTAGTT
26349949 TTAAAAAACAAAAACTG
1 TTAAAAAACAAAAACTG
26349966 TTAAAAAACAAAAACTG
1 TTAAAAAACAAAAACTG
26349983 ATGTGACACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
TTAAAAAACAAAAACTG
Found at i:26350589 original size:27 final size:27
Alignment explanation
Indices: 26350542--26350605 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
26350532 TGAGGGTGTA
*
26350542 AGTGCCGCCTATGACATAGGCTTCACT
1 AGTGCCGCCTATGACAGAGGCTTCACT
* * *
26350569 GGTGCCGCCTCTGCCAGAGGCTTCACT
1 AGTGCCGCCTATGACAGAGGCTTCACT
26350596 AGTGCCGCCT
1 AGTGCCGCCT
26350606 TTGGCGTGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (27 bp):
AGTGCCGCCTATGACAGAGGCTTCACT
Found at i:26350663 original size:17 final size:18
Alignment explanation
Indices: 26350633--26350668 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
26350623 AGTGTCACAT
*
26350633 CAGTTTTTGTTTTTTTAA
1 CAGTTTTTGATTTTTTAA
26350651 CAGTTTTT-ATTTTTTAA
1 CAGTTTTTGATTTTTTAA
26350668 C
1 C
26350669 TAATATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.64
Consensus pattern (18 bp):
CAGTTTTTGATTTTTTAA
Found at i:26351701 original size:21 final size:22
Alignment explanation
Indices: 26351677--26351718 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26351667 GTGTTTACTA
* *
26351677 GTTATGTTTTA-ATTTTTAATG
1 GTTATATTTTACAATTTTAATG
26351698 GTTATATTTTACAATTTTAAT
1 GTTATATTTTACAATTTTAAT
26351719 AAACCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (22 bp):
GTTATATTTTACAATTTTAATG
Found at i:26351776 original size:26 final size:25
Alignment explanation
Indices: 26351746--26351795 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
26351736 GAAAGTTCTT
*
26351746 TTTATAGCCAATTAGATGATTTTTAA
1 TTTATAACCAATTAG-TGATTTTTAA
* *
26351772 TTTATAACTAATTAGTTATTTTTA
1 TTTATAACCAATTAGTGATTTTTA
26351796 GTTTTTTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.52
Consensus pattern (25 bp):
TTTATAACCAATTAGTGATTTTTAA
Found at i:26359930 original size:40 final size:39
Alignment explanation
Indices: 26359883--26360051 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 39
26359873 GAATTTGGCT
*
26359883 CGGATATAACAACCAGCACGAATGCCTTCAGGACTTAGC
1 CGGATATAACAACCAGCACGAATGCCTTCAGGACTTAAC
**
26359922 CTAAATATAACAACCAGCACGAATGCCTTCAGGACTTAACC
1 C-GGATATAACAACCAGCACGAATGCCTTCAGGACTTAA-C
*
26359963 CGGATATAACAACCAGCACGAATGCCTTCGGGACTTAAAC
1 CGGATATAACAACCAGCACGAATGCCTTCAGGACTT-AAC
* **
26360003 CGGATATAACAACCAGCACGAAAGCCTTTGGGACTTAACC
1 CGGATATAACAACCAGCACGAATGCCTTCAGGACTTAA-C
26360043 CGGATATAA
1 CGGATATAA
26360052 TCCTCAATTA
Statistics
Matches: 118, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.03
40 111 0.94
41 4 0.03
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.18
Consensus pattern (39 bp):
CGGATATAACAACCAGCACGAATGCCTTCAGGACTTAAC
Found at i:26360037 original size:120 final size:119
Alignment explanation
Indices: 26359824--26360039 Score: 290
Period size: 120 Copynumber: 1.8 Consensus size: 119
26359814 TCCAAACACA
* * * * * * ***
26359824 AATGCCTTCGGGACTTAGCCCGGATATAACATCAGTACGAGTGCCTTTGGAATTTGGCTCGGATA
1 AATGCCTTCAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTGGGAATTAAACTCGGATA
*
26359889 TAACAACCAGCACGAATGCCTTCAGGACTTAGCCTAAATATAACAACCAGCACG
66 TAACAACCAGCACGAAAGCCTTCAGGACTTAGCCTAAATATAACAACCAGCACG
*
26359943 AATGCCTTCAGGACTTAACCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAAAC-CGGA
1 AATGCCTTCAGGACTTAACCCGGATATAAC-ACCAGCACGAATGCCTT-GGGAATTAAACTCGGA
**
26360007 TATAACAACCAGCACGAAAGCCTTTGGGACTTA
64 TATAACAACCAGCACGAAAGCCTTCAGGACTTA
26360040 ACCCGGATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 28 0.34
120 48 0.59
121 6 0.07
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (119 bp):
AATGCCTTCAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTGGGAATTAAACTCGGATA
TAACAACCAGCACGAAAGCCTTCAGGACTTAGCCTAAATATAACAACCAGCACG
Found at i:26366910 original size:814 final size:814
Alignment explanation
Indices: 26365342--26366962 Score: 3242
Period size: 814 Copynumber: 2.0 Consensus size: 814
26365332 ACAGAAACCT
26365342 CAGATTATTAGGGGGCATTTCTTACACACCTTGTCAACAAGCACATATCGACCCAAGGGATCCGA
1 CAGATTATTAGGGGGCATTTCTTACACACCTTGTCAACAAGCACATATCGACCCAAGGGATCCGA
26365407 CACTCGAATTATGAACTCAGTAGACTCAACAGGTAAAGTCTTACTGGATGCTAAAGTCTCACATA
66 CACTCGAATTATGAACTCAGTAGACTCAACAGGTAAAGTCTTACTGGATGCTAAAGTCTCACATA
26365472 CATATGAATGAGTAGAACCAGGATCAATCAAAGCAATCACATCAGTACCAAAGAGAGTGAAAGTA
131 CATATGAATGAGTAGAACCAGGATCAATCAAAGCAATCACATCAGTACCAAAGAGAGTGAAAGTA
26365537 CCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGTGCGCGTATAGCATAAGCTCTAACAGGAGC
196 CCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGTGCGCGTATAGCATAAGCTCTAACAGGAGC
26365602 ACGAGTCTCAAATCTGGTTGTAGCATCTCTAGACCCTCTCTGACCGCCGCTAGCATTTCCCATAT
261 ACGAGTCTCAAATCTGGTTGTAGCATCTCTAGACCCTCTCTGACCGCCGCTAGCATTTCCCATAT
26365667 TCCTAGGTGGTCTACCTCATGCTGTATTAGTACTCGAATCCCACTTTGGTTTACATTTTGCTCGG
326 TCCTAGGTGGTCTACCTCATGCTGTATTAGTACTCGAATCCCACTTTGGTTTACATTTTGCTCGG
26365732 ATAATCTCGAGCAGCCTTTGATAAAATGCTCGGCTAATCCGCATCTATAACAGGAACGGTCATGA
391 ATAATCTCGAGCAGCCTTTGATAAAATGCTCGGCTAATCCGCATCTATAACAGGAACGGTCATGA
26365797 AATCTACAACTCCCCAAATGCCATTTTTCGCAATACTTGCACTCGGTCCTATCCCGTCGATCATT
456 AATCTACAACTCCCCAAATGCCATTTTTCGCAATACTTGCACTCGGTCCTATCCCGTCGATCATT
26365862 TCCAACACTGGCAACTGAAATGGCTCGTGTACTCACAGGGGGTTGATCGCGATCTCGTCTGGAAA
521 TCCAACACTGGCAACTGAAATGGCTCGTGTACTCACAGGGGGTTGATCGCGATCTCGTCTGGAAA
26365927 AACTCAAAGTGTTCTTTGATCGGCCTGAATCATCTAAAAATTTCTTCGATGATTGCTGAAAAGAC
586 AACTCAAAGTGTTCTTTGATCGGCCTGAATCATCTAAAAATTTCTTCGATGATTGCTGAAAAGAC
26365992 TTTCCTGAAGATCTTTTACGAAATTTTGCAGCTCCGACATCAGCTTTTCTTTTCTCTTTACTAAG
651 TTTCCTGAAGATCTTTTACGAAATTTTGCAGCTCCGACATCAGCTTTTCTTTTCTCTTTACTAAG
26366057 TTCTTGGGCTTTGCAAGCTCGCTCGACAAGTACTACGAACTCTCATATTTCAAGAATGCCAACAA
716 TTCTTGGGCTTTGCAAGCTCGCTCGACAAGTACTACGAACTCTCATATTTCAAGAATGCCAACAA
26366122 ACATTTTTATATCTTCATTCAGCCCATATCGACC
781 ACATTTTTATATCTTCATTCAGCCCATATCGACC
26366156 CAGATTATTAGGGGGCATTTCTTACACACCTTGTCAACAAGCACATATCGACCCAAGGGATCCGA
1 CAGATTATTAGGGGGCATTTCTTACACACCTTGTCAACAAGCACATATCGACCCAAGGGATCCGA
26366221 CACTCGAATTATGAACTCAGTAGACTCAACAGGTAAAGTCTTACTGGATGCTAAAGTCTCACATA
66 CACTCGAATTATGAACTCAGTAGACTCAACAGGTAAAGTCTTACTGGATGCTAAAGTCTCACATA
26366286 CATATGAATGAGTAGAACCAGGATCAATCAAAGCAATCACATCAGTACCAAAGAGAGTGAAAGTA
131 CATATGAATGAGTAGAACCAGGATCAATCAAAGCAATCACATCAGTACCAAAGAGAGTGAAAGTA
26366351 CCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGTGCGCGTATAGCATAAGCTCTAACAGGAGC
196 CCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGTGCGCGTATAGCATAAGCTCTAACAGGAGC
26366416 ACGAGTCTCAAATCTGGTTGTAGCATCTCTAGACCCTCTCTGACCGCCGCTAGCATTTCCCATAT
261 ACGAGTCTCAAATCTGGTTGTAGCATCTCTAGACCCTCTCTGACCGCCGCTAGCATTTCCCATAT
26366481 TCCTAGGTGGTCTACCTCATGCTGTATTAGTACTCGAATCCCACTTTGGTTTACATTTTGCTCGG
326 TCCTAGGTGGTCTACCTCATGCTGTATTAGTACTCGAATCCCACTTTGGTTTACATTTTGCTCGG
26366546 ATAATCTCGAGCAGCCTTTGATAAAATGCTCGGCTAATCCGCATCTATAACAGGAACGGTCATGA
391 ATAATCTCGAGCAGCCTTTGATAAAATGCTCGGCTAATCCGCATCTATAACAGGAACGGTCATGA
26366611 AATCTACAACTCCCCAAATGCCATTTTTCGCAATACTTGCACTCGGTCCTATCCCGTCGATCATT
456 AATCTACAACTCCCCAAATGCCATTTTTCGCAATACTTGCACTCGGTCCTATCCCGTCGATCATT
26366676 TCCAACACTGGCAACTGAAATGGCTCGTGTACTCACAGGGGGTTGATCGCGATCTCGTCTGGAAA
521 TCCAACACTGGCAACTGAAATGGCTCGTGTACTCACAGGGGGTTGATCGCGATCTCGTCTGGAAA
26366741 AACTCAAAGTGTTCTTTGATCGGCCTGAATCATCTAAAAATTTCTTCGATGATTGCTGAAAAGAC
586 AACTCAAAGTGTTCTTTGATCGGCCTGAATCATCTAAAAATTTCTTCGATGATTGCTGAAAAGAC
26366806 TTTCCTGAAGATCTTTTACGAAATTTTGCAGCTCCGACATCAGCTTTTCTTTTCTCTTTACTAAG
651 TTTCCTGAAGATCTTTTACGAAATTTTGCAGCTCCGACATCAGCTTTTCTTTTCTCTTTACTAAG
26366871 TTCTTGGGCTTTGCAAGCTCGCTCGACAAGTACTACGAACTCTCATATTTCAAGAATGCCAACAA
716 TTCTTGGGCTTTGCAAGCTCGCTCGACAAGTACTACGAACTCTCATATTTCAAGAATGCCAACAA
26366936 ACATTTTTATATCTTCATTCAGCCCAT
781 ACATTTTTATATCTTCATTCAGCCCAT
26366963 CTTCAAAACG
Statistics
Matches: 807, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
814 807 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (814 bp):
CAGATTATTAGGGGGCATTTCTTACACACCTTGTCAACAAGCACATATCGACCCAAGGGATCCGA
CACTCGAATTATGAACTCAGTAGACTCAACAGGTAAAGTCTTACTGGATGCTAAAGTCTCACATA
CATATGAATGAGTAGAACCAGGATCAATCAAAGCAATCACATCAGTACCAAAGAGAGTGAAAGTA
CCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGTGCGCGTATAGCATAAGCTCTAACAGGAGC
ACGAGTCTCAAATCTGGTTGTAGCATCTCTAGACCCTCTCTGACCGCCGCTAGCATTTCCCATAT
TCCTAGGTGGTCTACCTCATGCTGTATTAGTACTCGAATCCCACTTTGGTTTACATTTTGCTCGG
ATAATCTCGAGCAGCCTTTGATAAAATGCTCGGCTAATCCGCATCTATAACAGGAACGGTCATGA
AATCTACAACTCCCCAAATGCCATTTTTCGCAATACTTGCACTCGGTCCTATCCCGTCGATCATT
TCCAACACTGGCAACTGAAATGGCTCGTGTACTCACAGGGGGTTGATCGCGATCTCGTCTGGAAA
AACTCAAAGTGTTCTTTGATCGGCCTGAATCATCTAAAAATTTCTTCGATGATTGCTGAAAAGAC
TTTCCTGAAGATCTTTTACGAAATTTTGCAGCTCCGACATCAGCTTTTCTTTTCTCTTTACTAAG
TTCTTGGGCTTTGCAAGCTCGCTCGACAAGTACTACGAACTCTCATATTTCAAGAATGCCAACAA
ACATTTTTATATCTTCATTCAGCCCATATCGACC
Found at i:26368662 original size:40 final size:39
Alignment explanation
Indices: 26368577--26368764 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 39
26368567 TCCAAACACA
*
26368577 AATGCCTTCGGGACTTAGCCCGGATATAAC-ACCAGTACG
1 AATGCCTTC-GGACTTAGCCCGGATATAACAACCAGCACG
* * *
26368616 AGTGCCTTCGGAACTTGGCCCGGATATAATAACCAGCACG
1 AATGCCTTCGG-ACTTAGCCCGGATATAACAACCAGCACG
*
26368656 AATGCCTTCAGGACTTAGCCCAGATATAACAACCAGCACG
1 AATGCCTTC-GGACTTAGCCCGGATATAACAACCAGCACG
*
26368696 AATGCCTTCAGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTC-GGACTTAGCCCGGATATAACAACCAGCACG
* *
26368736 AAAGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTC-GGACTTAGCCCGGATATAA
26368765 TCCTCAATTA
Statistics
Matches: 134, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.01
39 24 0.18
40 106 0.79
41 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (39 bp):
AATGCCTTCGGACTTAGCCCGGATATAACAACCAGCACG
Found at i:26376469 original size:18 final size:18
Alignment explanation
Indices: 26376443--26376478 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26376433 GAAAGTAACT
26376443 TACCAATTAATTAGCATA
1 TACCAATTAATTAGCATA
*
26376461 TACCGATTAATTAGCATA
1 TACCAATTAATTAGCATA
26376479 CATCCATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (18 bp):
TACCAATTAATTAGCATA
Found at i:26393664 original size:25 final size:25
Alignment explanation
Indices: 26393636--26393687 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26393626 GCAGTCGAAG
26393636 CAGCCAATAAGAACATCAAGAAGAT
1 CAGCCAATAAGAACATCAAGAAGAT
26393661 CAGCCAATAAGAACATCAAGAAGAT
1 CAGCCAATAAGAACATCAAGAAGAT
26393686 CA
1 CA
26393688 TAGGAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.21, G:0.15, T:0.12
Consensus pattern (25 bp):
CAGCCAATAAGAACATCAAGAAGAT
Found at i:26395445 original size:89 final size:88
Alignment explanation
Indices: 26395336--26395506 Score: 220
Period size: 89 Copynumber: 1.9 Consensus size: 88
26395326 GTAGTGGAGC
* * *
26395336 AGATCAAAGACGAAGGGCCTTAAACCCC-TAAACAGTAGGGTAACAGGCT-GAAAATTTATAGAT
1 AGATCAAAGACGAAGAGCCTT-AACCCCTTAAACAGTAAGGTAACAGGCTAG-AAA-TTATAGAC
*
26395399 CTTATCACCCTAAGCAGTAGGGAAAT
63 CCTATCACCCTAAGCAGTAGGGAAAT
* * * *
26395425 AGATCGAAGACGACGAGCCTTAACCCCTTAAGCAGTAAGGTAACAGGCTAGAAATTGTAGACCCT
1 AGATCAAAGACGAAGAGCCTTAACCCCTTAAACAGTAAGGTAACAGGCTAGAAATTATAGACCCT
*
26395490 ATCTCCCTAAGCAGTAG
66 ATCACCCTAAGCAGTAG
26395507 TGGAGTAGGC
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
88 30 0.42
89 40 0.56
90 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (88 bp):
AGATCAAAGACGAAGAGCCTTAACCCCTTAAACAGTAAGGTAACAGGCTAGAAATTATAGACCCT
ATCACCCTAAGCAGTAGGGAAAT
Found at i:26400627 original size:60 final size:59
Alignment explanation
Indices: 26400548--26400671 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 59
26400538 GGCAAAATTG
* * * *
26400548 AATAGTTGGATGACTATTTTATGACTTTTCATAGTTGGGTGATCAA-AGAAAAAATTTACT
1 AATAGTTGGATGACTATTTTATAAC-TTTCATAATAGGATGATCAAGA-AAAAAATTTACT
* * *
26400608 GATAGTTGGGTGA-TCATTTTGTAACTTTCATAATAGGATGATCAAGAAAAAAATTTACT
1 AATAGTTGGATGACT-ATTTTATAACTTTCATAATAGGATGATCAAGAAAAAAATTTACT
26400667 AATAG
1 AATAG
26400672 AAGACTGACT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 34 0.63
60 20 0.37
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.36
Consensus pattern (59 bp):
AATAGTTGGATGACTATTTTATAACTTTCATAATAGGATGATCAAGAAAAAAATTTACT
Found at i:26402877 original size:22 final size:23
Alignment explanation
Indices: 26402829--26402877 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
26402819 GATTATTTGA
*
26402829 AATTTAATTATATTTTATATTTT
1 AATTTAATTATATATTATATTTT
26402852 -ATTTAA-TATATAATTA-ATTTT
1 AATTTAATTATAT-ATTATATTTT
26402873 AATTT
1 AATTT
26402878 TTATAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
AATTTAATTATATATTATATTTT
Found at i:26402895 original size:26 final size:28
Alignment explanation
Indices: 26402840--26402895 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
26402830 ATTTAATTAT
* * *
26402840 ATTTTATATTTTATTTAATATATAATTA
1 ATTTTATATTTTATATAATATAAAAATA
26402868 ATTTTA-ATTTT-TATAATATAAAAATA
1 ATTTTATATTTTATATAATATAAAAATA
26402894 AT
1 AT
26402896 CAAATTATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 14 0.56
27 5 0.20
28 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
ATTTTATATTTTATATAATATAAAAATA
Found at i:26410287 original size:39 final size:38
Alignment explanation
Indices: 26410241--26410321 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 38
26410231 GCTCTAATGA
26410241 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTT-CGTTTAGCACTTATGT
*
26410280 GCTTCAGTTAGCCTTCGGGCTTCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCGTTTAGCACTTATGT
26410318 GCTT
1 GCTT
26410322 TAGCTAGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
38 20 0.49
39 21 0.51
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.38
Consensus pattern (38 bp):
GCTTCAGTTAGCCTCCGGGCTTCGTTTAGCACTTATGT
Found at i:26410308 original size:18 final size:18
Alignment explanation
Indices: 26410248--26410309 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
26410238 TGAGCTTCAG
*
26410248 TTAGCCTCCGGGCTTCCGT
1 TTAGCCTTCGGGCTT-CGT
* *
26410267 TTAGCACTTATGTGCTTCAG-
1 TTAGC-CTT-CGGGCTTC-GT
26410287 TTAGCCTTCGGGCTTCGT
1 TTAGCCTTCGGGCTTCGT
26410305 TTAGC
1 TTAGC
26410310 ACTTATGTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 1 0.03
18 11 0.32
19 8 0.24
20 8 0.24
21 6 0.18
ACGTcount: A:0.11, C:0.27, G:0.24, T:0.37
Consensus pattern (18 bp):
TTAGCCTTCGGGCTTCGT
Found at i:26410315 original size:38 final size:38
Alignment explanation
Indices: 26410241--26410340 Score: 146
Period size: 38 Copynumber: 2.6 Consensus size: 38
26410231 GCTCTAATGA
*
26410241 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTT-CGTTTAGCACTTATGT
26410280 GCTTCAGTTAGCCTTCGGGCTTCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCGTTTAGCACTTATGT
* * **
26410318 GCTTTAGCTAGATTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
26410341 AGATCACGAT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 35 0.62
39 21 0.38
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.38
Consensus pattern (38 bp):
GCTTCAGTTAGCCTTCGGGCTTCGTTTAGCACTTATGT
Found at i:26411667 original size:50 final size:51
Alignment explanation
Indices: 26411590--26411718 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
26411580 GACCATGGCA
26411590 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
* *
26411641 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
26411691 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
26411719 CTGATCAATG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:26411734 original size:31 final size:31
Alignment explanation
Indices: 26411694--26411842 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
26411684 ACAAATGACA
* *
26411694 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
26411725 AATGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
26411756 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
26411787 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
26411818 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
26411843 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:26415221 original size:39 final size:39
Alignment explanation
Indices: 26415175--26415302 Score: 220
Period size: 39 Copynumber: 3.3 Consensus size: 39
26415165 GCTCTGATGA
26415175 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
26415214 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
* * *
26415253 GCTTCAGTTAGCCTTCGGGCTGCAGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
26415292 GCTTTAGTTAG
1 GCTTCAGTTAG
26415303 ATTTCGGGCT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.14, C:0.25, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:26416107 original size:30 final size:30
Alignment explanation
Indices: 26416071--26416131 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
26416061 GTCATTTTAA
26416071 AAAACAAATTAAGTTTGTTATTATAAATTT
1 AAAACAAATTAAGTTTGTTATTATAAATTT
26416101 AAAACAAATTAAGTTTGTTATTATAAATTT
1 AAAACAAATTAAGTTTGTTATTATAAATTT
26416131 A
1 A
26416132 CATTTTACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.43
Consensus pattern (30 bp):
AAAACAAATTAAGTTTGTTATTATAAATTT
Found at i:26419492 original size:46 final size:46
Alignment explanation
Indices: 26419437--26419705 Score: 194
Period size: 46 Copynumber: 5.8 Consensus size: 46
26419427 TATTTGGGCA
*
26419437 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGGACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
* * * * *
26419483 TCTGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATGTTACTAGG-CA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C--GGACG
* * * * *
26419530 TACGAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
* * * * * *
26419576 TCCGAACTCGTTGAGCTGGGTCTGAGTTC-GTGA--GATGTAACTAGG-CA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C--GGACG
* *
26419623 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
* * *
26419669 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26419706 GCGGGTTACA
Statistics
Matches: 168, Mismatches: 37, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
43 7 0.04
45 6 0.04
46 88 0.52
47 53 0.32
48 7 0.04
50 7 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
Found at i:26419545 original size:47 final size:47
Alignment explanation
Indices: 26419489--26419651 Score: 161
Period size: 47 Copynumber: 3.5 Consensus size: 47
26419479 GACGTCTGAA
* *
26419489 CTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTTACTAGGCATACGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTTACTAGGCATCCGAG
* * * * * * * *
26419536 CTCGTTGAGTTGAGTCCGAGCTCACT--TATGGATACGA-ACGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGAGAT-GTTACTAGGCATCCGAG
* * * *
26419582 CTCGTTGAGCTGGGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTTACTAGGCATCCGAG
26419629 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
26419652 ACTTATGGAT
Statistics
Matches: 86, Mismatches: 25, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
45 1 0.01
46 30 0.35
47 54 0.63
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTTACTAGGCATCCGAG
Found at i:26419603 original size:93 final size:93
Alignment explanation
Indices: 26419433--26419698 Score: 406
Period size: 93 Copynumber: 2.9 Consensus size: 93
26419423 CGGATATTTG
* * * *
26419433 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGGACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
26419498 TTAAGTCCGAGTTCGTGAGATGTTACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
26419526 GGCATACGAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* * *
26419591 CTGGGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
26419619 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
26419684 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
26419699 CTTATGGGCG
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 153 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:26426297 original size:34 final size:34
Alignment explanation
Indices: 26426254--26426322 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
26426244 AAATAGAAAC
*
26426254 TAAAAATACATGGTGGTTCACTATTTCACCTAAT
1 TAAAAATACATGGTGATTCACTATTTCACCTAAT
*
26426288 TAAAAATACATGGTGATTCACTATTTCACTTAAT
1 TAAAAATACATGGTGATTCACTATTTCACCTAAT
26426322 T
1 T
26426323 GATGATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (34 bp):
TAAAAATACATGGTGATTCACTATTTCACCTAAT
Found at i:26427670 original size:23 final size:23
Alignment explanation
Indices: 26427637--26427686 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
26427627 AAATTATGGA
*
26427637 TTTAGTACTTGTA-TTTTATCAAT
1 TTTAGTACTTGTACTTTTA-AAAT
*
26427660 TTTAGTTCTTGTACTTTTAAAAT
1 TTTAGTACTTGTACTTTTAAAAT
26427683 TTTA
1 TTTA
26427687 ATTTTGATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (23 bp):
TTTAGTACTTGTACTTTTAAAAT
Found at i:26427962 original size:3 final size:3
Alignment explanation
Indices: 26427954--26427982 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26427944 TATAAATTTA
26427954 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26427983 ACTTAATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:26428596 original size:17 final size:18
Alignment explanation
Indices: 26428574--26428611 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
26428564 ACATAATAAT
*
26428574 TATTT-AAATTCCAAAAA
1 TATTTAAAATTACAAAAA
26428591 TATTTAAAATTACAAAAA
1 TATTTAAAATTACAAAAA
26428609 TAT
1 TAT
26428612 CTTTTGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TATTTAAAATTACAAAAA
Found at i:26428668 original size:17 final size:17
Alignment explanation
Indices: 26428648--26428686 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
26428638 ATTTTTCATT
*
26428648 ATTTTCATATT-TTTAGA
1 ATTTT-ATATTATTTAAA
26428665 ATTTTATATTATTTAAA
1 ATTTTATATTATTTAAA
26428682 ATTTT
1 ATTTT
26428687 TAATTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTTATATTATTTAAA
Found at i:26430132 original size:60 final size:57
Alignment explanation
Indices: 26430045--26430164 Score: 177
Period size: 60 Copynumber: 2.1 Consensus size: 57
26430035 AAAAATCTAA
* * *
26430045 ATAACATGGTATGCTCTTTCTTTTGGTGTAATCTTAGCATAATAGATAATATTAATCTCC
1 ATAACATGGCATGCTCTTTCTTGTGGTGTAATCTTAGCAT--TAGATAA-AATAATCTCC
*
26430105 ATAACATGGCATGTTCTTTCTTGTGGTGTAATCTTAGCATTAGATAAAATAATCTCC
1 ATAACATGGCATGCTCTTTCTTGTGGTGTAATCTTAGCATTAGATAAAATAATCTCC
26430162 ATA
1 ATA
26430165 GAAATATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
57 12 0.21
58 7 0.12
60 37 0.66
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (57 bp):
ATAACATGGCATGCTCTTTCTTGTGGTGTAATCTTAGCATTAGATAAAATAATCTCC
Found at i:26430281 original size:38 final size:39
Alignment explanation
Indices: 26430216--26430293 Score: 149
Period size: 38 Copynumber: 2.0 Consensus size: 39
26430206 GTTGAAACAG
26430216 TTAGAATAGTTAGTTTTTTTGTTATGAATCAGTTGTACA
1 TTAGAATAGTTAGTTTTTTTGTTATGAATCAGTTGTACA
26430255 TTAGAATAGTTAG-TTTTTTGTTATGAATCAGTTGTACA
1 TTAGAATAGTTAGTTTTTTTGTTATGAATCAGTTGTACA
26430293 T
1 T
26430294 GAGTTGTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 26 0.67
39 13 0.33
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (39 bp):
TTAGAATAGTTAGTTTTTTTGTTATGAATCAGTTGTACA
Found at i:26436181 original size:31 final size:30
Alignment explanation
Indices: 26436116--26436205 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
26436106 CCTTTTTATT
* * * *
26436116 TTTAAATAAAAACT-T-AATAACTCAATGA
1 TTTAAATAAAAATTATAAATAATTTAATAA
* * *
26436144 TTTAAATAAAAATTGTTGAATATTTTAATAA
1 TTTAAATAAAAATT-ATAAATAATTTAATAA
26436175 TTTAAATAAAAATTATAAATAATTTAATAA
1 TTTAAATAAAAATTATAAATAATTTAATAA
26436205 T
1 T
26436206 CAAATTATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 13 0.25
30 15 0.29
31 23 0.45
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTAAATAAAAATTATAAATAATTTAATAA
Found at i:26436195 original size:22 final size:22
Alignment explanation
Indices: 26436170--26436215 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
26436160 TGAATATTTT
26436170 AATAATTTAAATAA-AAATTATA
1 AATAATTT-AATAACAAATTATA
26436192 AATAATTTAATAATCAAATTATA
1 AATAATTTAATAA-CAAATTATA
26436215 A
1 A
26436216 CTCTTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.23
22 8 0.36
23 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
AATAATTTAATAACAAATTATA
Found at i:26439667 original size:16 final size:17
Alignment explanation
Indices: 26439643--26439675 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26439633 TTAGAATTAG
*
26439643 ATTGGAAAATT-ATTTA
1 ATTGAAAAATTAATTTA
26439659 ATTGAAAAATTAATTTA
1 ATTGAAAAATTAATTTA
26439676 TCTAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
ATTGAAAAATTAATTTA
Found at i:26439868 original size:21 final size:24
Alignment explanation
Indices: 26439828--26439873 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
26439818 TCATCATCTA
26439828 TTCTACTTAGAATAAAATATTATT
1 TTCTACTTAGAATAAAATATTATT
26439852 TTCTA-TTA-AAT-AAATATTATT
1 TTCTACTTAGAATAAAATATTATT
26439873 T
1 T
26439874 GTATTTTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.50
22 3 0.14
23 3 0.14
24 5 0.23
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (24 bp):
TTCTACTTAGAATAAAATATTATT
Found at i:26453535 original size:16 final size:17
Alignment explanation
Indices: 26453516--26453573 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 17
26453506 AATTAATTAA
*
26453516 ATTTTTAAT-TTTTTAT
1 ATTTTTAATAATTTTAT
26453532 ATTTTT-ATAATTTTAT
1 ATTTTTAATAATTTTAT
*
26453548 ACTTTTTAAATAATATTAAT
1 A-TTTTT-AATAAT-TTTAT
26453568 ATTTTT
1 ATTTTT
26453574 TTTGAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
15 2 0.06
16 13 0.37
17 5 0.14
19 10 0.29
20 5 0.14
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTAATAATTTTAT
Found at i:26461624 original size:38 final size:38
Alignment explanation
Indices: 26461582--26461672 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 38
26461572 GTCCAACTCA
* *
26461582 ACACACCATGTGGGGATAAAATCAACCCACCCAGCCCT
1 ACACACCAAGTGGGGATAAAATCAACCCACCCAACCCT
* **
26461620 ACACACCAAGAATGGGGATGAAATCAACCCTTCCAACCCT
1 ACACACCAAG--TGGGGATAAAATCAACCCACCCAACCCT
26461660 ACACACCAAGTGG
1 ACACACCAAGTGG
26461673 TACCGTATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 12 0.26
40 34 0.74
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.13
Consensus pattern (38 bp):
ACACACCAAGTGGGGATAAAATCAACCCACCCAACCCT
Found at i:26461644 original size:40 final size:40
Alignment explanation
Indices: 26461592--26461669 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
26461582 ACACACCATG
*
26461592 TGGGGATAAAATCAACCCACCCAGCCCTACACACCAAGAA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGAA
* **
26461632 TGGGGATGAAATCAACCCTTCCAACCCTACACACCAAG
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAG
26461670 TGGTACCGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.37, C:0.35, G:0.15, T:0.13
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGAA
Found at i:26462121 original size:17 final size:18
Alignment explanation
Indices: 26462085--26462124 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26462075 CCCAGATTCT
*
26462085 CACACGCCCGTGTGGGCC
1 CACACGCCCGTGTAGGCC
*
26462103 CACACGCTCGTG-AGGCC
1 CACACGCCCGTGTAGGCC
26462120 CACAC
1 CACAC
26462125 TGGCCATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.45, G:0.28, T:0.10
Consensus pattern (18 bp):
CACACGCCCGTGTAGGCC
Found at i:26468836 original size:40 final size:40
Alignment explanation
Indices: 26468790--26468868 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
26468780 GCACACCATG
*
26468790 TGGGGATAAAATCAACCCAC-CCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCC-CTCCAACCCTACACACCAAGTA
*
26468830 TGGGGATGAAATCAACCCCTCCAACCCTACACACCAAGT
1 TGGGGATAAAATCAACCCCTCCAACCCTACACACCAAGT
26468869 GGTACCATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 35 0.97
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCCTCCAACCCTACACACCAAGTA
Found at i:26471979 original size:2 final size:2
Alignment explanation
Indices: 26471972--26472000 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26471962 AAAATTAGCA
26471972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26472001 GATTTGAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26479106 original size:21 final size:20
Alignment explanation
Indices: 26479078--26479116 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26479068 ACATGTATTT
26479078 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
26479098 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
26479117 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:26479753 original size:48 final size:47
Alignment explanation
Indices: 26479675--26479859 Score: 210
Period size: 48 Copynumber: 3.9 Consensus size: 47
26479665 GAATACATTT
* * *
26479675 ATTTGGCTACGGGCCATGATATTAGAACTTCAGGTGTGAGGTACTTTG
1 ATTTGGCTACGGGCCATGATATTAGCACTTCAGGTGCGAGAT-CTTTG
* * * *
26479723 ATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGAGCTTCATTG
1 ATTTGGCTACGGGCCATGATATTAGCACTTCAGGTGCGAG-ATCTTTG
* *
26479771 ATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGATTTATTG
1 ATTTGGCTACGGGCCATGATATTAGCACTTCAGGTGCGAGATCT-TTG
* * * *
26479819 AATTGGCTTCGAGCCATGATATTGGCACTT-AGTGTGCGAGA
1 ATTTGGCTACGGGCCATGATATTAGCACTTCAG-GTGCGAGA
26479860 CTCCTAAGTA
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
47 2 0.02
48 114 0.97
49 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
ATTTGGCTACGGGCCATGATATTAGCACTTCAGGTGCGAGATCTTTG
Found at i:26479839 original size:96 final size:96
Alignment explanation
Indices: 26479670--26479858 Score: 274
Period size: 96 Copynumber: 2.0 Consensus size: 96
26479660 TTAGGGAATA
* * * * *
26479670 CATTTATTTGGCTACGGGCCATGATATTAGAACTTCAGGTGTGAGGTACTTTGATTTGGCTTCGG
1 CATTGATTTGGCTACGGGCCATGATATTAGAACTTCAGGTGCGAGATACTTTGAATTGGCTTCGA
26479735 GCCATGATATTGGCACTTCAG-GTGCGAGCTT
66 GCCATGATATTGGCACTT-AGTGTGCGAGCTT
* * *
26479766 CATTGATTTGGCTACGGGCCATGATATTAGCACTTCGGGTGCGAGAT-TTATTGAATTGGCTTCG
1 CATTGATTTGGCTACGGGCCATGATATTAGAACTTCAGGTGCGAGATACT-TTGAATTGGCTTCG
26479830 AGCCATGATATTGGCACTTAGTGTGCGAG
65 AGCCATGATATTGGCACTTAGTGTGCGAG
26479859 ACTCCTAAGT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
95 3 0.04
96 80 0.96
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (96 bp):
CATTGATTTGGCTACGGGCCATGATATTAGAACTTCAGGTGCGAGATACTTTGAATTGGCTTCGA
GCCATGATATTGGCACTTAGTGTGCGAGCTT
Found at i:26480891 original size:12 final size:12
Alignment explanation
Indices: 26480874--26480900 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26480864 GCAGGTTTGG
26480874 CACGGCCTAGCA
1 CACGGCCTAGCA
26480886 CACGGCCTAGCA
1 CACGGCCTAGCA
26480898 CAC
1 CAC
26480901 AAGCTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:26485789 original size:6 final size:6
Alignment explanation
Indices: 26485774--26485808 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
26485764 AAAGTATTCC
26485774 AAAATAA AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAA
26485809 CAGAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:26485819 original size:18 final size:17
Alignment explanation
Indices: 26485775--26485819 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
26485765 AAGTATTCCA
*
26485775 AAATAAAAAATAAAAAT
1 AAATAAAAAATAAAAAC
*
26485792 AAAAATAAAAATAAAAAC
1 AAATA-AAAAATAAAAAC
26485810 AGAATAAAAA
1 A-AATAAAAA
26485820 TGCAACCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 4 0.17
18 16 0.70
19 3 0.13
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.13
Consensus pattern (17 bp):
AAATAAAAAATAAAAAC
Found at i:26488886 original size:282 final size:282
Alignment explanation
Indices: 26488382--26488944 Score: 1054
Period size: 282 Copynumber: 2.0 Consensus size: 282
26488372 GACTTCTACC
26488382 CACTTGGTGAAGTAATCGATGACCAGAAAGATGAATCGATGCCAATTAGAAGCTTTTGGCAATAT
1 CACTTGGTGAAGTAATCGATGACCAGAAAGATGAATCGATGCCAATTAGAAGCTTTTGGCAATAT
26488447 TGGCCCAATCACATCCATGCCCCACATAGAGAAAGGCCATGGAGAAGTCATAACGTGAAGAGGTA
66 TGGCCCAATCACATCCATGCCCCACATAGAGAAAGGCCATGGAGAAGTCATAACGTGAAGAGGTA
26488512 AATGAGACACATGAATTTTGTCTCCATAAATTTGGCACTTATGACATCTCTTGGCATAATTTGTA
131 AATGAGACACATGAATTTTGTCTCCATAAATTTGGCACTTATGACATCTCTTGGCATAATTTGTA
26488577 CAATCCCCTTCCATGGTGGACCAATAATACCTAAATCTCATAATTTTCCTGGCCATTGTAAAACT
196 CAATCCCCTTCCATGGTGGACCAATAATACCTAAATCTCATAATTTTCCTGGCCATTGTAAAACT
**
26488642 ATTAGTATGTGTTCAACAAACG
261 ATTACCATGTGTTCAACAAACG
* * * *
26488664 CACTTGGTGAAGTAATTGATGACCAGAAAGATGAATCGATGCCCATTGGAATCTTTTGGCAATAT
1 CACTTGGTGAAGTAATCGATGACCAGAAAGATGAATCGATGCCAATTAGAAGCTTTTGGCAATAT
* *
26488729 TGGCCCAATCACGTCTATGCCCCACATAGAGAAAGGCCATGGAGAAGTCATAACGTGAAGAGGTA
66 TGGCCCAATCACATCCATGCCCCACATAGAGAAAGGCCATGGAGAAGTCATAACGTGAAGAGGTA
26488794 AATGAGACACATGAATTTTGTCTCCATAAATTTGGCACTTATGACATCTCTTGGCATAATTTGTA
131 AATGAGACACATGAATTTTGTCTCCATAAATTTGGCACTTATGACATCTCTTGGCATAATTTGTA
26488859 CAATCCCCTTCCATGGTGGACCAATAATACCTAAATCTCATAATTTTCCTGGCCATTGTAAAACT
196 CAATCCCCTTCCATGGTGGACCAATAATACCTAAATCTCATAATTTTCCTGGCCATTGTAAAACT
26488924 ATTACCATGTGTTCAACAAAC
261 ATTACCATGTGTTCAACAAAC
26488945 ATCCTTATGG
Statistics
Matches: 273, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
282 273 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (282 bp):
CACTTGGTGAAGTAATCGATGACCAGAAAGATGAATCGATGCCAATTAGAAGCTTTTGGCAATAT
TGGCCCAATCACATCCATGCCCCACATAGAGAAAGGCCATGGAGAAGTCATAACGTGAAGAGGTA
AATGAGACACATGAATTTTGTCTCCATAAATTTGGCACTTATGACATCTCTTGGCATAATTTGTA
CAATCCCCTTCCATGGTGGACCAATAATACCTAAATCTCATAATTTTCCTGGCCATTGTAAAACT
ATTACCATGTGTTCAACAAACG
Found at i:26494245 original size:6 final size:6
Alignment explanation
Indices: 26494234--26494266 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
26494224 TCGTCCTATC
*
26494234 TTTTTA TTTTTA TTTTTA TTTATA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
26494267 CAATTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:26494272 original size:18 final size:17
Alignment explanation
Indices: 26494235--26494276 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
26494225 CGTCCTATCT
**
26494235 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTCAA
26494252 TTTATATTTTTATTTCAA
1 TTT-TATTTTTATTTCAA
26494270 TTTTATT
1 TTTTATT
26494277 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTTCAA
Found at i:26495784 original size:15 final size:15
Alignment explanation
Indices: 26495764--26495797 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
26495754 GAGGAAGGAG
26495764 ATTACCTATGATTTT
1 ATTACCTATGATTTT
26495779 ATTACCTATGATTTT
1 ATTACCTATGATTTT
26495794 ATTA
1 ATTA
26495798 TCAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (15 bp):
ATTACCTATGATTTT
Found at i:26504931 original size:12 final size:12
Alignment explanation
Indices: 26504914--26504953 Score: 80
Period size: 12 Copynumber: 3.3 Consensus size: 12
26504904 ATTGTGGTTC
26504914 CCTTGACCACTT
1 CCTTGACCACTT
26504926 CCTTGACCACTT
1 CCTTGACCACTT
26504938 CCTTGACCACTT
1 CCTTGACCACTT
26504950 CCTT
1 CCTT
26504954 AAAGACTGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.15, C:0.42, G:0.07, T:0.35
Consensus pattern (12 bp):
CCTTGACCACTT
Found at i:26509592 original size:26 final size:25
Alignment explanation
Indices: 26509550--26509794 Score: 140
Period size: 26 Copynumber: 9.4 Consensus size: 25
26509540 AAATAGTTTG
*
26509550 AAATAAA-AA-ATCTAAAGCAATTTA
1 AAATAAATAATATATAAA-CAATTTA
* * *
26509574 AAATATATAATATATAAAGCATTGTTTTTT
1 AAATAAATAATATATAAA-CA----ATTTA
* * **
26509604 AAAGAAATAATATGTAAA-AAAATA
1 AAATAAATAATATATAAACAATTTA
*
26509628 AAATAAATAATATATATGAAACAGTTTTA
1 AAATAAAT-A-ATATAT-AAACA-ATTTA
* * * **
26509657 AAATAAAATAATGTATAAAGTACTCCA
1 AAAT-AAATAATATATAAA-CAATTTA
26509684 AAATAAATAATATATGAAACAATTTA
1 AAATAAATAATATAT-AAACAATTTA
* * *
26509710 AAATAAATAATCTCTAAAAAAATTTA
1 AAATAAATAATATAT-AAACAATTTA
* *
26509736 AAATAAATAATATA-AAATAGTTTA
1 AAATAAATAATATATAAACAATTTA
*
26509760 ATATAAATAATATATAAA-AACTTTA
1 AAATAAATAATATATAAACAA-TTTA
26509785 AAATAAATAA
1 AAATAAATAA
26509795 AATAGTTTAA
Statistics
Matches: 168, Mismatches: 37, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
24 36 0.21
25 19 0.11
26 61 0.36
27 15 0.09
28 8 0.05
29 7 0.04
30 22 0.13
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (25 bp):
AAATAAATAATATATAAACAATTTA
Found at i:26509794 original size:18 final size:18
Alignment explanation
Indices: 26509768--26509841 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 18
26509758 TAATATAAAT
*
26509768 AATATATAAAAACTTTAA
1 AATAAATAAAAACTTTAA
*
26509786 AATAAATAAAATAGTTTAAAA
1 AATAAATAAAA-ACTTT--AA
26509807 TGAATAATATATAAAACTATTAA
1 --AATAA-ATA-AAAACT-TTAA
26509830 AATAAATAAAAA
1 AATAAATAAAAA
26509842 TAAATAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
18 10 0.22
19 8 0.18
20 3 0.07
21 7 0.16
23 7 0.16
24 5 0.11
25 5 0.11
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (18 bp):
AATAAATAAAAACTTTAA
Found at i:26509800 original size:44 final size:44
Alignment explanation
Indices: 26509740--26509840 Score: 159
Period size: 44 Copynumber: 2.3 Consensus size: 44
26509730 AATTTAAAAT
*
26509740 AAATAATATAAAATAGTTTAATATAAATAATATATAAAAACT-TTA
1 AAATAA-ATAAAATAGTTTAAAATAAATAATATAT-AAAACTATTA
*
26509785 AAATAAATAAAATAGTTTAAAATGAATAATATATAAAACTATTA
1 AAATAAATAAAATAGTTTAAAATAAATAATATATAAAACTATTA
26509829 AAATAAATAAAA
1 AAATAAATAAAA
26509841 ATAAATAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
43 6 0.11
44 41 0.77
45 6 0.11
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (44 bp):
AAATAAATAAAATAGTTTAAAATAAATAATATATAAAACTATTA
Found at i:26509805 original size:19 final size:20
Alignment explanation
Indices: 26509740--26509812 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 20
26509730 AATTTAAAAT
26509740 AAATAATATAAAATAGTTTAATA
1 AAATAATATAAAATAG-TT--TA
* *
26509763 TAAATAATATATAAAAACTTTA
1 -AAATAATATA-AAATAGTTTA
26509785 AAATAA-ATAAAATAGTTTA
1 AAATAATATAAAATAGTTTA
26509804 AAATGAATA
1 AAAT-AATA
26509813 ATATATAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
19 12 0.29
20 5 0.12
21 7 0.17
22 2 0.05
24 12 0.29
25 4 0.10
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATAATATAAAATAGTTTA
Found at i:26509846 original size:14 final size:15
Alignment explanation
Indices: 26509829--26509857 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26509819 AAAACTATTA
26509829 AAATAAATAA-AAAT
1 AAATAAATAACAAAT
26509843 AAATAAATAACAAAT
1 AAATAAATAACAAAT
26509858 TAAAAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAATAACAAAT
Found at i:26510655 original size:18 final size:17
Alignment explanation
Indices: 26510632--26510666 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26510622 AAATCGAATA
26510632 AAAAATAAAATGAAAAAT
1 AAAAATAAAAT-AAAAAT
*
26510650 AAAAATAGAATAAAAAT
1 AAAAATAAAATAAAAAT
26510667 GCAACATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAATAAAATAAAAAT
Found at i:26514141 original size:36 final size:30
Alignment explanation
Indices: 26514072--26514131 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
26514062 ATCAAAGTTT
26514072 GATGATTTGGTCTTGGTTTTTCTCCTTTGA
1 GATGATTTGGTCTTGGTTTTTCTCCTTTGA
26514102 GATGATTTGGTCTTGGTTTTTCTCCTTTGA
1 GATGATTTGGTCTTGGTTTTTCTCCTTTGA
26514132 TTTCTAGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.10, C:0.13, G:0.23, T:0.53
Consensus pattern (30 bp):
GATGATTTGGTCTTGGTTTTTCTCCTTTGA
Found at i:26515773 original size:20 final size:20
Alignment explanation
Indices: 26515745--26515801 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
26515735 AATACTATGA
* * *
26515745 ACCACTCCATTTATTTTCTT
1 ACCATTCCATTTACTTACTT
26515765 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
26515785 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
26515802 GCATAAACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:26517867 original size:29 final size:29
Alignment explanation
Indices: 26517800--26517924 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
26517790 AATTCTACAA
* * *
26517800 ACATGCATATAGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26517828 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
26517857 ACATTCGTATGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26517886 ACATTCATATGGCCCATTAGGCCCAAATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
26517915 ACATTCATAT
1 ACATTCATAT
26517925 ACATGCTTTC
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 20 0.23
29 66 0.77
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:26525564 original size:29 final size:29
Alignment explanation
Indices: 26525494--26525589 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
26525484 AAGTCTACAA
*
26525494 ACATGCATATGGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
26525522 TCATTCATATGGCCCATTATGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26525551 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
26525580 ACATTCATAT
1 ACATTCATAT
26525590 ACATGCTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 21 0.35
29 39 0.65
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:26535716 original size:24 final size:22
Alignment explanation
Indices: 26535689--26535733 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26535679 TTGATATTAT
26535689 GTTTTGATATAAAAAATTAAAGTG
1 GTTTTGA-AT-AAAAATTAAAGTG
*
26535713 GTTTTGAATAAAAGTTAAAGT
1 GTTTTGAATAAAAATTAAAGT
26535734 TCAACAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 2 0.10
24 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (22 bp):
GTTTTGAATAAAAATTAAAGTG
Found at i:26542142 original size:77 final size:77
Alignment explanation
Indices: 26542026--26542183 Score: 289
Period size: 77 Copynumber: 2.1 Consensus size: 77
26542016 TCTACAGAAA
26542026 ACAAACAACAGTAAACACAGTACACAGTAAAAAAAAGTCTTGGGCCTAAGCCCCTTTCAGTATCA
1 ACAAACAACAGTAAACACAGTACACAGTAAAAAAAAGTCTTGGGCCTAAGCCCCTTTCAGTATCA
26542091 GTATCAGTATGC
66 GTATCAGTATGC
* * *
26542103 ACAAACAACAGTAAACACAGTGCACAGTCAAAAACAGTCTTGGGCCTAAGCCCCTTTCAGTATCA
1 ACAAACAACAGTAAACACAGTACACAGTAAAAAAAAGTCTTGGGCCTAAGCCCCTTTCAGTATCA
26542168 GTATCAGTATGC
66 GTATCAGTATGC
26542180 ACAA
1 ACAA
26542184 GGGCCTTAGC
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (77 bp):
ACAAACAACAGTAAACACAGTACACAGTAAAAAAAAGTCTTGGGCCTAAGCCCCTTTCAGTATCA
GTATCAGTATGC
Done.