Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 107 of 444
Found at i:26547539 original size:22 final size:20
Alignment explanation
Indices: 26547504--26547545 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
26547494 CCATTATTGA
*
26547504 GAAATTGAAGAATTATGCTT
1 GAAATTGAAGAATTAAGCTT
26547524 GAAATTGATAGAAATTAAGCTT
1 GAAATTGA-AG-AATTAAGCTT
26547546 AGATTATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 9 0.47
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (20 bp):
GAAATTGAAGAATTAAGCTT
Found at i:26548332 original size:30 final size:31
Alignment explanation
Indices: 26548316--26548383 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
26548306 GGTAAATGTA
*
26548316 AATGATTACAGGGTATGAATATGCAAATAAG
1 AATGATTACAGGGTATGAATATGTAAATAAG
* *
26548347 AATGATTACA-GGTATGTATATGTAAATATG
1 AATGATTACAGGGTATGAATATGTAAATAAG
26548377 AAT-ATTA
1 AATGATTA
26548384 ATGCCCATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 4 0.12
30 20 0.59
31 10 0.29
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.32
Consensus pattern (31 bp):
AATGATTACAGGGTATGAATATGTAAATAAG
Found at i:26562214 original size:49 final size:44
Alignment explanation
Indices: 26562095--26562225 Score: 147
Period size: 49 Copynumber: 2.8 Consensus size: 44
26562085 AGTCGATGAT
*
26562095 GATAGCCACTGTAAGA-CATGTCTGGGACATGCATCGGCTAAGA
1 GATAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTAAGA
* * * *
26562138 GTTGTGCTAGTATAAGACCATGTCTGGGACATGCCATCGGCCTCGAAGA
1 GAT-AGCCAGTGTAAGACCATGTCTGGGACATG-CATCGG-CT--AAGA
26562187 CGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GATAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
26562226 ACAACTTATC
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.03
44 9 0.13
45 15 0.21
46 6 0.08
47 2 0.03
49 34 0.48
50 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (44 bp):
GATAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTAAGA
Found at i:26565903 original size:5 final size:5
Alignment explanation
Indices: 26565893--26565934 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
26565883 TTAAAAACTT
* *
26565893 AATAA AATAAA AATAA AATAA AATAA GATAA AATAA GATAA A
1 AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AATAA A
26565935 TAATCAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:26565903 original size:16 final size:16
Alignment explanation
Indices: 26565893--26565944 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
26565883 TTAAAAACTT
26565893 AATAAAATAAAAATAA
1 AATAAAATAAAAATAA
*
26565909 AATAAAAT-AAGATAA
1 AATAAAATAAAAATAA
*
26565924 AATAAGATAAATAATCAA
1 AATAAAATAAA-AAT-AA
26565942 AAT
1 AAT
26565945 TTTCAAGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 13 0.43
16 10 0.33
17 2 0.07
18 5 0.17
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:26576716 original size:29 final size:29
Alignment explanation
Indices: 26576683--26576784 Score: 143
Period size: 29 Copynumber: 3.5 Consensus size: 29
26576673 TGACGAGATC
26576683 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
26576712 GGCACTAAGTGTGCGTGCTGGAAATATAAT
1 GGCACTAAGTGTGCGTGCTGGAAATAT-AT
* * *
26576742 -GCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
26576770 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
26576785 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 1 0.02
29 62 0.95
30 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:26584648 original size:29 final size:29
Alignment explanation
Indices: 26584615--26584716 Score: 143
Period size: 29 Copynumber: 3.5 Consensus size: 29
26584605 TGACGAGATC
26584615 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
26584644 GGCACTAAGTGTGCGTGCTGGAAATATAAT
1 GGCACTAAGTGTGCGTGCTGGAAATAT-AT
* * *
26584674 -GCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
26584702 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
26584717 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 1 0.02
29 62 0.95
30 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:26586566 original size:47 final size:47
Alignment explanation
Indices: 26586502--26586820 Score: 226
Period size: 47 Copynumber: 6.7 Consensus size: 47
26586492 ATTTGTGTGT
*
26586502 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATGATGAGAGC
* *
26586548 CAGTATAAGACCATGTCTGGGACATGGCATCGGCA-TTGA-GACGAGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATGATGA-GA--GC
* * * *
26586596 TAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCAATGATGATAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATGATGAGAGC
* * * * *
26586643 CAGTGTAAGA-CATGTCTGGGACAT-GCATTGG-ATAAGA-GTTGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATGATG-AGAGC
* * * * * * *
26586687 TAGTATAAGGCCATGTCTGAGACATGGCATCAGCATGTATATATACGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--CAT-GAT--GAGAGC
* * * * *
26586739 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGACGATAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATGATGAGAGC
26586788 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
26586821 TAACTTATCC
Statistics
Matches: 212, Mismatches: 40, Indels: 39
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 15 0.07
46 25 0.12
47 61 0.29
48 17 0.08
49 42 0.20
50 3 0.01
51 1 0.00
52 33 0.16
53 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATGATGAGAGC
Found at i:26586664 original size:94 final size:95
Alignment explanation
Indices: 26586503--26586820 Score: 319
Period size: 94 Copynumber: 3.3 Consensus size: 95
26586493 TTTGTGTGTC
* * *
26586503 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCCAGTATAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTAAGACCATGTCTG
26586567 GGACATGGCATCGGCATTGAGACGAGTGCT
66 GGACATGGCATCGGCATTGAGACGAGTGCT
* *
26586597 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCAATGATGATAGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAAT-ATGAGAGCCAGTGTAAGACCATGTCT
* * *
26586660 GGGACAT-GCATTGG-A-TAAGA-GTTGTGCT
65 GGGACATGGCATCGGCATTGAGACG-AGTGCT
* * * * * * *
26586688 AGTATAAGGCCATGTCTGAGACATGGCATCAGCATGTATATATACGAGAGCTAGTGTAAGACCAT
1 AGTGTAA-GACATGTCTGGGACATGGCATCGGCCT-CA-ATAT--GAGAGCCAGTGTAAGACCAT
* * * *
26586753 GTCTAGGACATGGCATCGGCCTCGATGACGA-TAGCC
61 GTCTGGGACATGGCATCGGCATTGA-GACGAGT-GCT
26586789 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGG
26586821 TAACTTATCC
Statistics
Matches: 180, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
90 1 0.01
91 15 0.08
92 14 0.08
93 14 0.08
94 51 0.28
95 18 0.10
96 14 0.08
97 13 0.07
98 6 0.03
100 3 0.02
101 30 0.17
102 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATTGAGACGAGTGCT
Found at i:26586753 original size:52 final size:49
Alignment explanation
Indices: 26586685--26586818 Score: 137
Period size: 49 Copynumber: 2.7 Consensus size: 49
26586675 TAAGAGTTGT
* * *
26586685 GCTAGTATAAGGCCATGTCTGAGACATGGCATCAGCAT-GTATATATACGAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCATCG---AT-GACGAGA
* * *
26586737 GCTAGTGTAAGACCATGTCT-AGGACATGGCATCGGCCTCGATGACGATA
1 GCTAGTGTAAGACCATGTCTGA-GACATGGCATCAGCATCGATGACGAGA
* *
26586786 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATC
26586819 GGTAACTTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
49 35 0.49
50 2 0.03
51 1 0.01
52 32 0.45
53 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCATCGATGACGAGA
Found at i:26586798 original size:145 final size:140
Alignment explanation
Indices: 26586549--26586813 Score: 397
Period size: 139 Copynumber: 1.9 Consensus size: 140
26586539 TATGAGAGCC
* * *
26586549 AGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTA
1 AGTATAAGACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTA
*
26586614 GGACATGCATCGGCCTCAATGATGATAGCCAGTGTAAGA-CATGTCTGGGACATGCATTGGATAA
66 GGACATGCATCGGCCTCAATGACGATAGCCAGTGTAAGACCATGTCTGGGACATGCATTGGATAA
26586678 GAGTTGTGCT
131 GAGTTGTGCT
* * *
26586688 AGTATAAGGCCATGTCTGAGACATGGCATCAGCATGTATATATACGAGAGCTAGTGTAAGACCAT
1 AGTATAAGACCATGTCTGAGACATGGCATCAGCA--T-T-GAGACGAGAGCTAGTGTAAGA-CAT
*
26586753 GTCTAGGACATGGCATCGGCCTCGATGACGATAGCCAGTGTAAGACCATGTCTGGGACATG
61 GTCTAGGACAT-GCATCGGCCTCAATGACGATAGCCAGTGTAAGACCATGTCTGGGACATG
26586814 GCATCGGTAA
Statistics
Matches: 111, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
139 31 0.28
141 1 0.01
142 1 0.01
143 18 0.16
144 14 0.13
145 31 0.28
146 15 0.14
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTATAAGACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTA
GGACATGCATCGGCCTCAATGACGATAGCCAGTGTAAGACCATGTCTGGGACATGCATTGGATAA
GAGTTGTGCT
Found at i:26609806 original size:4 final size:4
Alignment explanation
Indices: 26609797--26612572 Score: 5552
Period size: 4 Copynumber: 694.0 Consensus size: 4
26609787 TTACTACCAA
26609797 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26609845 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26609893 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26609941 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26609989 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610037 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610085 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610133 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610181 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610229 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610277 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610325 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610373 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610421 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610469 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610517 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610565 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610613 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610661 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610709 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610757 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610805 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610853 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610901 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610949 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26610997 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611045 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611093 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611141 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611189 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611237 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611285 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611333 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611381 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611429 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611477 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611525 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611573 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611621 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611669 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611717 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611765 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611813 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611861 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611909 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26611957 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612005 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612053 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612101 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612149 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612197 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612245 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612293 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612341 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612389 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612437 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612485 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612533 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26612573 AATAAGAACA
Statistics
Matches: 2772, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 2772 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:26615227 original size:17 final size:18
Alignment explanation
Indices: 26615205--26615239 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26615195 GAAAGAAAAT
*
26615205 AAACAAAA-ATAAATAAA
1 AAACAAAATAGAAATAAA
26615222 AAACAAAATAGAAATAAA
1 AAACAAAATAGAAATAAA
26615240 GTGAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.80, C:0.06, G:0.03, T:0.11
Consensus pattern (18 bp):
AAACAAAATAGAAATAAA
Found at i:26620148 original size:30 final size:30
Alignment explanation
Indices: 26620114--26620190 Score: 118
Period size: 30 Copynumber: 2.6 Consensus size: 30
26620104 CATATGGGTG
26620114 TGTGGTCTGCCCGTGTGCCTCACATGGGCA
1 TGTGGTCTGCCCGTGTGCCTCACATGGGCA
* *
26620144 TGTGGTCTGCTCGTGTGCCTCACATGGGCG
1 TGTGGTCTGCCCGTGTGCCTCACATGGGCA
* *
26620174 TGTGGTTTACCCGTGTG
1 TGTGGTCTGCCCGTGTG
26620191 GATGTGCCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.08, C:0.26, G:0.35, T:0.31
Consensus pattern (30 bp):
TGTGGTCTGCCCGTGTGCCTCACATGGGCA
Found at i:26622028 original size:47 final size:48
Alignment explanation
Indices: 26621959--26622224 Score: 230
Period size: 47 Copynumber: 5.7 Consensus size: 48
26621949 TAGGTAAAGT
* * *
26621959 GTCGATGCCATATCCCAGACATGGCCTTATACTGGCTCACATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA
* * **
26622006 GTCGATGCCATGTCTCAGACATGGTCTTACACTGACT-ACCATCTCTTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCGAA
** * * * *
26622054 CCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTACATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA
* * * *
26622100 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA
* * *
26622145 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--AT
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGAA
*
26622193 GGCTGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACT
26622225 AGCCAAATAA
Statistics
Matches: 184, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 73 0.40
47 81 0.44
48 28 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA
Found at i:26622096 original size:46 final size:47
Alignment explanation
Indices: 26622008--26622227 Score: 147
Period size: 46 Copynumber: 4.7 Consensus size: 47
26621998 CATCTCAAGT
*
26622008 CGATGCCATGT-CTCAGACATGGTCTTACACT-GAC-TACCATCTCTTA-CC
1 CGATG-CATGTCCT-AGACAT-GTCTTACACTAG-CTTACCATCTC-GAGCC
*
26622056 CGATGCATGTCCTAGACATGTCTTACACTAGCTTA-CATCTCGAGGC
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTTACCATCTCGAGCC
* * * *
26622102 CGATGCATGTCCCAGACATGTCTTACACTAGC-T-CTCGTCTCAATG-T
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTTAC-CATCTCGA-GCC
* * ** *
26622148 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATAT-G-G-C
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCT-T-ACCATCTCGAGCC
* *
26622196 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCTAGACATGTCTTACACTAGC
26622228 CAAATAATAA
Statistics
Matches: 144, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
45 2 0.01
46 72 0.50
47 43 0.30
48 24 0.17
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTTACCATCTCGAGCC
Found at i:26622223 original size:140 final size:141
Alignment explanation
Indices: 26621961--26622227 Score: 353
Period size: 140 Copynumber: 1.9 Consensus size: 141
26621951 GGTAAAGTGT
* * *
26621961 CGATGCCATATCCCAGACATGGCCTTATACTGGCTCACATCTCAAGTCGATGCCATGTCTCAGAC
1 CGATGCCATATCCCAGACATGGCCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
* * *
26622026 ATGGTCTTACACTGACTACCATCTCTTACCCGATGCATGTCCTAGACATGTCTTACACTAGCTTA
66 ATGGTCTTACACTGACTACCATATCATACCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA
26622091 CATCTCGAGGC
131 CATCTCGAGGC
* * * *
26622102 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCAGA
1 CGATGCCATATCCCAGACATGGCCTTACACTAGCTCACATCTCAA-GTCGATGCCATGTCCCAGA
* ** *
26622165 CATGGTCTTACACTGGCT-CTCATAAT-ATGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
65 CATGGTCTTACACTGACTAC-CAT-ATCATACCCGATGCATGTCCCAGACATGTCTTACACTAGC
26622228 CAAATAATAA
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
139 20 0.18
140 83 0.76
141 6 0.06
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (141 bp):
CGATGCCATATCCCAGACATGGCCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTACCATATCATACCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA
CATCTCGAGGC
Found at i:26628123 original size:12 final size:13
Alignment explanation
Indices: 26628087--26628124 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
26628077 AAATATTTGA
26628087 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
26628100 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
26628114 CTTG-TCTTAAT
1 CTTGTTCTTAAT
26628125 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:26640098 original size:47 final size:47
Alignment explanation
Indices: 26640023--26640287 Score: 240
Period size: 47 Copynumber: 5.7 Consensus size: 47
26640013 GGGTAAAGTA
* *
26640023 CCGATGCCATGTCCCAGACAAGGCCTTACACTGGCTCAT-ATCTCAAG
1 CCGATGCCATGTCCCAGAC-ATGTCTTACACTGGCTCATCATCTCAAG
* * * **
26640070 CCGATGCCATGGCCCAGACATGGTCTTACACTGACT-ATCATTTGGTAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCT-CAAG
* * *
26640118 CCGATG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTC-AAG
* **
26640164 CCGATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGCCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-G
* ** **
26640210 CCGATACCATGTCCCAGACATAGTCTTACACTGGCTC-TCATAACGTGG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAG
*
26640258 CTGATG-CATGTCCCAGACATGTCTTACACT
1 CCGATGCCATGTCCCAGACATGTCTTACACT
26640288 AGCCAAATAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 74 0.41
47 75 0.42
48 30 0.17
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAG
Found at i:26640282 original size:140 final size:141
Alignment explanation
Indices: 26640023--26640287 Score: 356
Period size: 140 Copynumber: 1.9 Consensus size: 141
26640013 GGGTAAAGTA
* * *
26640023 CCGATGCCATGTCCCAGACAAGGCCTTACACTGGCTCATATCTCAAGCCGATGCCATGGCCCAGA
1 CCGATGCCATGTCCCAGACAAGGCCTTACACTAGCTCATACCTCAAGCCGATACCATGGCCCAGA
* ***
26640088 CATGGTCTTACACTGACTATCATTTGGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
66 CATAGTCTTACACTGACTATCATAACGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
26640153 ACGTCTCGAGG
131 ACGTCTCGAGG
* * * *
26640164 CCGATG-CATGTCCCAGAC-ATGTCTTACACTAGCTC-TCGCCTCAATGCCGATACCATGTCCCA
1 CCGATGCCATGTCCCAGACAAGGCCTTACACTAGCTCAT-ACCTCAA-GCCGATACCATGGCCCA
* * * *
26640226 GACATAGTCTTACACTGGCTCTCATAACGTGGCTGATGCATGTCCCAGACATGTCTTACACT
64 GACATAGTCTTACACTGACTATCATAACGTAGCCGATGCATGTCCCAGACATGTCTTACACT
26640288 AGCCAAATAA
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 81 0.76
141 6 0.06
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (141 bp):
CCGATGCCATGTCCCAGACAAGGCCTTACACTAGCTCATACCTCAAGCCGATACCATGGCCCAGA
CATAGTCTTACACTGACTATCATAACGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
ACGTCTCGAGG
Found at i:26643690 original size:42 final size:41
Alignment explanation
Indices: 26643632--26643848 Score: 229
Period size: 42 Copynumber: 5.2 Consensus size: 41
26643622 CGTGCAGTGG
* * *
26643632 ACACACGGCCGAACTACACACCCATGGGGCAGACCGTGTGTG
1 ACACACGGTCAAACTACA-ACCCATGGGGCAGACCGTGTGTC
** * * *
26643674 ACACAATGCCAAACTACAAGCCCATGGGGCAAACCGTGTGTG
1 ACACACGGTCAAACTACAA-CCCATGGGGCAGACCGTGTGTC
** * * *
26643716 ACACACGGTTGAACTACACGCCCATGGGGCAGGCCGTGTATC
1 ACACACGGTCAAACTACA-ACCCATGGGGCAGACCGTGTGTC
*
26643758 ACACACGGTCAAACTACAATCTCATGGGGCAGA-CGTGTGTC
1 ACACACGGTCAAACTACAA-CCCATGGGGCAGACCGTGTGTC
* * *
26643799 ACACACGGGCAAACTACATGCCCATGGGGTAGACCGTGTGTC
1 ACACACGGTCAAACTACA-ACCCATGGGGCAGACCGTGTGTC
26643841 ACACACGG
1 ACACACGG
26643849 CATAGACACA
Statistics
Matches: 146, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
41 36 0.25
42 110 0.75
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (41 bp):
ACACACGGTCAAACTACAACCCATGGGGCAGACCGTGTGTC
Found at i:26643836 original size:83 final size:84
Alignment explanation
Indices: 26643632--26643849 Score: 276
Period size: 84 Copynumber: 2.6 Consensus size: 84
26643622 CGTGCAGTGG
* * **
26643632 ACACACGGCCGAACTACACACCCATGGGGCAGACCGTGTGTGACACAATGCCAAACTACAAGCCC
1 ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTCACACACGGCCAAACTACAAGCCC
*
26643697 ATGGGGCAAACCGTGTGTG
66 ATGGGGCAAACCGTGTGTC
** * * * * *
26643716 ACACACGGTTGAACTACACGCCCATGGGGCAGGCCGTGTATCACACACGGTCAAACTACAATCTC
1 ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTCACACACGGCCAAACTACAAGCCC
*
26643781 ATGGGGCAGA-CGTGTGTC
66 ATGGGGCAAACCGTGTGTC
* * * *
26643799 ACACACGGGCAAACTACATGCCCATGGGGTAGACCGTGTGTCACACACGGC
1 ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTCACACACGGC
26643850 ATAGACACAC
Statistics
Matches: 113, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
83 50 0.44
84 63 0.56
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (84 bp):
ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTCACACACGGCCAAACTACAAGCCC
ATGGGGCAAACCGTGTGTC
Found at i:26644643 original size:47 final size:45
Alignment explanation
Indices: 26644569--26644836 Score: 225
Period size: 47 Copynumber: 5.7 Consensus size: 45
26644559 TATGGTGCCA
**
26644569 ATGCTATGTCCCAGACACTGTCTTACACTGGCTCACATCTCAAG-TT
1 ATGC-ATGTCCCAGACA-TGTCTTACACTGGCTCACATCTCAAGCCG
* *
26644615 AGTGTCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGTCG
1 A-TG-CATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGCCG
* * * *
26644663 ATGCCATGTCCCAAACATTGCCTTACACTGACT-ATCATTTCATAGCCG
1 ATG-CATGTCCCAGACA-TGTCTTACACTGGCTCA-CATCTCA-AGCCG
* * * *
26644711 ATGCATCTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AAGCCG
* * ** * *
26644757 ATGCATGTCCCAAACATGTCTTACACTAGCTTTCATCTCAATGTCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GCCG
* *
26644803 ATGCCATGTCCCAGGCATGGTCTTATACTGGCTC
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTC
26644837 TTATAATGTG
Statistics
Matches: 182, Mismatches: 28, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.35
47 96 0.53
48 22 0.12
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGCCG
Found at i:26651624 original size:26 final size:26
Alignment explanation
Indices: 26651595--26651648 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26651585 AATATAAGGC
26651595 TATTTACCAAGCTTCATTGCCACCCT
1 TATTTACCAAGCTTCATTGCCACCCT
26651621 TATTTACCAAGCTTCATTGCCACCCT
1 TATTTACCAAGCTTCATTGCCACCCT
26651647 TA
1 TA
26651649 CATACCTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.33, G:0.07, T:0.35
Consensus pattern (26 bp):
TATTTACCAAGCTTCATTGCCACCCT
Found at i:26651654 original size:26 final size:26
Alignment explanation
Indices: 26651599--26651654 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26651589 TAAGGCTATT
**
26651599 TACCAAGCTTCATTGCCACCCTTATT
1 TACCAAGCTTCATTGCCACCCTTACA
26651625 TACCAAGCTTCATTGCCACCCTTACA
1 TACCAAGCTTCATTGCCACCCTTACA
26651651 TACC
1 TACC
26651655 TAGTTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.38, G:0.07, T:0.30
Consensus pattern (26 bp):
TACCAAGCTTCATTGCCACCCTTACA
Found at i:26661456 original size:40 final size:40
Alignment explanation
Indices: 26661412--26661635 Score: 360
Period size: 40 Copynumber: 5.6 Consensus size: 40
26661402 AACCCAATTA
* * ** *
26661412 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* *
26661452 CCTTCGGGACTTAACCCGGAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
26661492 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
26661532 CCTTCGGGACTTAACCCGG-AATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
26661571 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
26661611 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
26661636 TCCTCAATTG
Statistics
Matches: 172, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.23
40 133 0.77
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.18
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:26661594 original size:79 final size:79
Alignment explanation
Indices: 26661412--26661635 Score: 358
Period size: 79 Copynumber: 2.8 Consensus size: 79
26661402 AACCCAATTA
* * ** * *
26661412 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAATAG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGG-AATAA
*
26661477 CAACCAGCATGAATG
65 CAACCAGCACGAATG
26661492 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAATAAC
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAATAAC
26661557 AACCAGCACGAATG
66 AACCAGCACGAATG
*
26661571 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATGCCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGA-ATAA
26661636 TCCTCAATTG
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
79 77 0.57
80 58 0.43
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.18
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAATAAC
AACCAGCACGAATG
Found at i:26670569 original size:41 final size:41
Alignment explanation
Indices: 26670512--26670596 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
26670502 CAAAGTTAAC
26670512 TTCCCTTAATGGCTATTTTGAGATTCTTTTAAGAATATCTT
1 TTCCCTTAATGGCTATTTTGAGATTCTTTTAAGAATATCTT
26670553 TTCCCTTAATGGCTATTTTGAGATTCTTTTAAGAATATCTT
1 TTCCCTTAATGGCTATTTTGAGATTCTTTTAAGAATATCTT
26670594 TTC
1 TTC
26670597 ACTAGTAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49
Consensus pattern (41 bp):
TTCCCTTAATGGCTATTTTGAGATTCTTTTAAGAATATCTT
Found at i:26673390 original size:23 final size:23
Alignment explanation
Indices: 26673364--26673410 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26673354 CCAAGTGAAC
26673364 AAGAATTCTGACCTCATATTCTT
1 AAGAATTCTGACCTCATATTCTT
26673387 AAGAATTCTGACCTCATATTCTT
1 AAGAATTCTGACCTCATATTCTT
26673410 A
1 A
26673411 CTATGAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (23 bp):
AAGAATTCTGACCTCATATTCTT
Found at i:26674188 original size:25 final size:26
Alignment explanation
Indices: 26674159--26674208 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
26674149 TCAATTGTTT
*
26674159 TTATTATAATATAA-TTTTATAACAA
1 TTATTATAATATAACCTTTATAACAA
* *
26674184 TTATTATTATTTAACCTTTATAACA
1 TTATTATAATATAACCTTTATAACA
26674209 TATATATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (26 bp):
TTATTATAATATAACCTTTATAACAA
Found at i:26686117 original size:45 final size:45
Alignment explanation
Indices: 26686053--26686144 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
26686043 TCTTTCGAAG
*
26686053 AATATTATTGGGAAAAAGGGGATAGGGGATAAAATAGGTGGTTAC
1 AATATTATTAGGAAAAAGGGGATAGGGGATAAAATAGGTGGTTAC
26686098 AATATTATTAGGAAAAAGGGGATAGGGGATAAAATAGGTGGTTAC
1 AATATTATTAGGAAAAAGGGGATAGGGGATAAAATAGGTGGTTAC
26686143 AA
1 AA
26686145 ACTATTGGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.42, C:0.02, G:0.32, T:0.24
Consensus pattern (45 bp):
AATATTATTAGGAAAAAGGGGATAGGGGATAAAATAGGTGGTTAC
Found at i:26697635 original size:20 final size:22
Alignment explanation
Indices: 26697598--26697641 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
26697588 AACATTTAAC
*
26697598 TTTTTAATATATTCTTTAAATT
1 TTTTTAATAAATTCTTTAAATT
*
26697620 TTTTTAA-AAATT-TTTAACTT
1 TTTTTAATAAATTCTTTAAATT
26697640 TT
1 TT
26697642 AATATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 4 0.20
22 7 0.35
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTAATAAATTCTTTAAATT
Found at i:26704170 original size:25 final size:25
Alignment explanation
Indices: 26704138--26704189 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 25
26704128 ATTTAATATT
*
26704138 TATTTTTTTATAAATATATAAAATAAA
1 TATTTTTTAATAAATA-A-AAAATAAA
26704165 TATTTTTTAATAAATAAAAAATAAA
1 TATTTTTTAATAAATAAAAAATAAA
26704190 CAATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.33
26 1 0.04
27 15 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TATTTTTTAATAAATAAAAAATAAA
Found at i:26707490 original size:5 final size:6
Alignment explanation
Indices: 26707464--26707496 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
26707454 AAATATATCC
26707464 AAATTA AAATTA AAATTA AAA-TA AAATTGA AAA
1 AAATTA AAATTA AAATTA AAATTA AAATT-A AAA
26707497 AAATCTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.20
6 16 0.64
7 4 0.16
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (6 bp):
AAATTA
Found at i:26719345 original size:34 final size:34
Alignment explanation
Indices: 26719302--26719371 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
26719292 AAATGCTTAG
26719302 TAAGCTCACATGCAAATAGCAACTAACACAACTA
1 TAAGCTCACATGCAAATAGCAACTAACACAACTA
26719336 TAAGCTCACATGCAAATAGCAACTAACACAACTA
1 TAAGCTCACATGCAAATAGCAACTAACACAACTA
26719370 TA
1 TA
26719372 TACGCAAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.26, G:0.09, T:0.19
Consensus pattern (34 bp):
TAAGCTCACATGCAAATAGCAACTAACACAACTA
Found at i:26719780 original size:93 final size:93
Alignment explanation
Indices: 26719668--26719839 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
26719658 GCCCATAAGT
* *
26719668 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26719733 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
26719761 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
26719826 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
26719840 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:26719835 original size:46 final size:46
Alignment explanation
Indices: 26719660--26719835 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
26719650 TGTAACCCGC
* *
26719660 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
26719706 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
26719752 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
26719799 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
26719836 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:26725057 original size:20 final size:20
Alignment explanation
Indices: 26725013--26725057 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26725003 AATTTTAGCT
*
26725013 TTTATCTTCATTTATCTTTA
1 TTTATATTCATTTATCTTTA
*
26725033 ATTATATTCATTTAT-TTGTA
1 TTTATATTCATTTATCTT-TA
26725053 TTTAT
1 TTTAT
26725058 CTTTTAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTATATTCATTTATCTTTA
Found at i:26740410 original size:11 final size:12
Alignment explanation
Indices: 26740394--26740456 Score: 69
Period size: 12 Copynumber: 5.2 Consensus size: 12
26740384 GTAACTCAAT
26740394 TTTTATT-TTTA
1 TTTTATTATTTA
26740405 TTTTATTATTTA
1 TTTTATTATTTA
26740417 -TTTATTACTTTA
1 TTTTATTA-TTTA
*
26740429 TTTTATTTTATTA
1 TTTTATTAT-TTA
26740442 -TTTATTACTTTA
1 TTTTATTA-TTTA
26740454 TTT
1 TTT
26740457 GGATATTAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
11 14 0.32
12 18 0.41
13 12 0.27
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTATTATTTA
Found at i:26740448 original size:25 final size:24
Alignment explanation
Indices: 26740401--26740456 Score: 94
Period size: 25 Copynumber: 2.3 Consensus size: 24
26740391 AATTTTTATT
26740401 TTTATTTTATTATTTATTTATTAC
1 TTTATTTTATTATTTATTTATTAC
*
26740425 TTTATTTTATTTTATTATTTATTAC
1 TTTATTTTATTAT-TTATTTATTAC
26740450 TTTATTT
1 TTTATTT
26740457 GGATATTAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTATTTTATTATTTATTTATTAC
Found at i:26742452 original size:10 final size:10
Alignment explanation
Indices: 26742439--26742463 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26742429 ATCTTCATTC
26742439 ATCTTTAATT
1 ATCTTTAATT
26742449 ATCTTTAATT
1 ATCTTTAATT
26742459 ATCTT
1 ATCTT
26742464 CATTTCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (10 bp):
ATCTTTAATT
Found at i:26742548 original size:40 final size:41
Alignment explanation
Indices: 26742504--26742599 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 41
26742494 GGCGTTTGAA
* *
26742504 TAAAAACGCCACTATAAATCGACCATTAGCGGCGCTTTT-C
1 TAAAAACGCCACTATAAATCGACCATCAGAGGCGCTTTTAC
* * *
26742544 TAAAAACGCCATTATAGATCGAGCATCAGAGGCGCTTTTAC
1 TAAAAACGCCACTATAAATCGACCATCAGAGGCGCTTTTAC
* *
26742585 -CAAAACGCCGCTATA
1 TAAAAACGCCACTATA
26742600 TGTTGAGCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 46 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
TAAAAACGCCACTATAAATCGACCATCAGAGGCGCTTTTAC
Found at i:26742739 original size:40 final size:41
Alignment explanation
Indices: 26742682--26742796 Score: 103
Period size: 40 Copynumber: 2.9 Consensus size: 41
26742672 ATTAGCGGCG
*
26742682 CTATAGATAGAGAATTAGTGGCGCTTTTTTAAAAACAC-C-A
1 CTATAGATAGAGCATTAG-GGCGCTTTTTTAAAAACACGCAA
* * * * *
26742722 TTATAGATTGAGCATTAGCGGC-ATTTTTAAAAAAAACGCAA
1 CTATAGATAGAGCATTAG-GGCGCTTTTTTAAAAACACGCAA
* * *
26742763 CTATAGATCGAGCATTAGCG-GCATTTTTAAAAAC
1 CTATAGATAGAGCATTAGGGCGCTTTTTTAAAAAC
26742797 GCTGCAAAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
39 12 0.21
40 29 0.50
41 17 0.29
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (41 bp):
CTATAGATAGAGCATTAGGGCGCTTTTTTAAAAACACGCAA
Found at i:26743185 original size:13 final size:13
Alignment explanation
Indices: 26743167--26743192 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26743157 AATTTAAGAT
26743167 TTTAAGGTTTATG
1 TTTAAGGTTTATG
26743180 TTTAAGGTTTATG
1 TTTAAGGTTTATG
26743193 GGTTAATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (13 bp):
TTTAAGGTTTATG
Found at i:26743238 original size:15 final size:14
Alignment explanation
Indices: 26743207--26743259 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
26743197 AATGGTTAGT
*
26743207 GGTTAGGGGTTAAG
1 GGTTAGGGGATAAG
*
26743221 GGTTAAGGGGATATG
1 GGTT-AGGGGATAAG
* *
26743236 GGTTAAGGGGACAGG
1 GGTT-AGGGGATAAG
26743251 GGTTAGGGG
1 GGTTAGGGG
26743260 TTTATAGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.26
15 25 0.74
ACGTcount: A:0.23, C:0.02, G:0.53, T:0.23
Consensus pattern (14 bp):
GGTTAGGGGATAAG
Found at i:26743251 original size:22 final size:22
Alignment explanation
Indices: 26743210--26743261 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
26743200 GGTTAGTGGT
*
26743210 TAGGGGTTAAGGGTTAAGGGGA
1 TAGGGGTTAAGGGTGAAGGGGA
* *
26743232 TATGGGTTAAGGG-GACAGGGGT
1 TAGGGGTTAAGGGTGA-AGGGGA
26743254 TAGGGGTT
1 TAGGGGTT
26743262 TATAGTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.23, C:0.02, G:0.50, T:0.25
Consensus pattern (22 bp):
TAGGGGTTAAGGGTGAAGGGGA
Found at i:26743258 original size:7 final size:7
Alignment explanation
Indices: 26743200--26743261 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
26743190 ATGGGTTAAT
*
26743200 GGTTAGT
1 GGTTAGG
26743207 GGTTAGG
1 GGTTAGG
*
26743214 GGTTAAG
1 GGTTAGG
26743221 GGTTAAGG
1 GGTT-AGG
* *
26743229 GGATATG
1 GGTTAGG
26743236 GGTTAAGG
1 GGTT-AGG
**
26743244 GGACAGG
1 GGTTAGG
26743251 GGTTAGG
1 GGTTAGG
26743258 GGTT
1 GGTT
26743262 TATAGTTTAT
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 33 0.79
8 9 0.21
ACGTcount: A:0.21, C:0.02, G:0.50, T:0.27
Consensus pattern (7 bp):
GGTTAGG
Found at i:26743340 original size:21 final size:22
Alignment explanation
Indices: 26743302--26743362 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
26743292 AGGAATTATG
* * *
26743302 GGTTTAAGGATTATGGTTT-GT
1 GGTTTAAGGGTTAGGGTTTAAT
*
26743323 GGTTTAAGGGTTGGGGTTTAAT
1 GGTTTAAGGGTTAGGGTTTAAT
26743345 -GTTTAAGGGTTAGTGGTT
1 GGTTTAAGGGTTAG-GGTT
26743363 AGGGGTTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 28 0.85
22 5 0.15
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGTTTAAT
Found at i:26743952 original size:19 final size:18
Alignment explanation
Indices: 26743919--26743954 Score: 63
Period size: 18 Copynumber: 1.9 Consensus size: 18
26743909 AATTCTCTAC
26743919 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
26743937 ATTTCCCCTAAATCCCTA
1 ATTTCCCCT-AATCCCTA
26743955 GGCATCTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.28, C:0.39, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:26746366 original size:16 final size:16
Alignment explanation
Indices: 26746341--26746375 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26746331 AATTTCATTT
*
26746341 TATGTGTGAATGCCTA
1 TATGTATGAATGCCTA
*
26746357 TATGTATGAATGCGTA
1 TATGTATGAATGCCTA
26746373 TAT
1 TAT
26746376 CTATCTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (16 bp):
TATGTATGAATGCCTA
Found at i:26749559 original size:6 final size:6
Alignment explanation
Indices: 26749550--26749581 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
26749540 GGAATACACC
*
26749550 GTAAGA GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
26749582 CAGGTACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:26750532 original size:11 final size:12
Alignment explanation
Indices: 26750503--26750534 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26750493 TTATGTTTTA
26750503 TTTCTTT-TTAT
1 TTTCTTTATTAT
26750514 TTTCTTTATT-T
1 TTTCTTTATTAT
26750525 TTTCTTTATT
1 TTTCTTTATT
26750535 CAATTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 18 0.90
12 2 0.10
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTCTTTATTAT
Found at i:26750597 original size:16 final size:17
Alignment explanation
Indices: 26750547--26750600 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 17
26750537 ATTAATATAT
* *
26750547 TATAATTATATAATTTA
1 TATAATTATTTACTTTA
*
26750564 -AT-ATAATTTACTTTA
1 TATAATTATTTACTTTA
26750579 TATAATTATTTAC-TTA
1 TATAATTATTTACTTTA
26750595 TATAAT
1 TATAAT
26750601 AAGTAAATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 10 0.32
16 13 0.42
17 8 0.26
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (17 bp):
TATAATTATTTACTTTA
Found at i:26751518 original size:11 final size:11
Alignment explanation
Indices: 26751498--26751526 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26751488 TTTAATTTGA
26751498 TAAT-GAATTT
1 TAATAGAATTT
26751508 TAATAGAATTT
1 TAATAGAATTT
26751519 TAATAGAA
1 TAATAGAA
26751527 AATTTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:26752694 original size:28 final size:28
Alignment explanation
Indices: 26752663--26752717 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
26752653 ATAGGGATAA
26752663 AATATTTTTGATGCTCTCAAAGACGCAG
1 AATATTTTTGATGCTCTCAAAGACGCAG
26752691 AATATTTTTGATGCTCTCAAAGACGCA
1 AATATTTTTGATGCTCTCAAAGACGCA
26752718 TCAATCGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (28 bp):
AATATTTTTGATGCTCTCAAAGACGCAG
Found at i:26756215 original size:66 final size:66
Alignment explanation
Indices: 26756104--26756232 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 66
26756094 AGTTGAACCA
* *
26756104 AAACCGCTAGAAGGAAACGCCATTGTGCTTGGTTTTGAAGCATTCTGAAAATCCTCAAATGCACT
1 AAACCGCTAGAAGGAAACGCCATTGTGCTCGGTTTTGAAGCATTCTGAAAATCCCCAAATGCACT
26756169 G
66 G
* *
26756170 AAACTGCTAGAAGGAAATG-CAGTTGTGCTCGGTTTTGAAGCATTCTGAAAATCCCCAAATGCA
1 AAACCGCTAGAAGGAAACGCCA-TTGTGCTCGGTTTTGAAGCATTCTGAAAATCCCCAAATGCA
26756233 TCGTGTGCAA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 2 0.03
66 56 0.97
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (66 bp):
AAACCGCTAGAAGGAAACGCCATTGTGCTCGGTTTTGAAGCATTCTGAAAATCCCCAAATGCACT
G
Found at i:26771637 original size:19 final size:21
Alignment explanation
Indices: 26771607--26771647 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
26771597 CCACGAGCAC
*
26771607 TTATCGTATATT-TCAAATTT
1 TTATCGTATATTATAAAATTT
26771627 TTATC-TATATTATAAAATTT
1 TTATCGTATATTATAAAATTT
26771647 T
1 T
26771648 ATGTATCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (21 bp):
TTATCGTATATTATAAAATTT
Found at i:26771648 original size:19 final size:20
Alignment explanation
Indices: 26771607--26771653 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
26771597 CCACGAGCAC
*
26771607 TTATCGTATATTTCAAATTT
1 TTATCGTATATTTCAAAATT
26771627 TTATC-TATATTAT-AAAATT
1 TTATCGTATATT-TCAAAATT
26771646 TTAT-GTAT
1 TTATCGTAT
26771654 CAGTTCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (20 bp):
TTATCGTATATTTCAAAATT
Found at i:26779697 original size:13 final size:13
Alignment explanation
Indices: 26779621--26779706 Score: 50
Period size: 13 Copynumber: 6.2 Consensus size: 13
26779611 GTTGGTATTT
26779621 TTAAAATAATAT-
1 TTAAAATAATATA
* *
26779633 TTAAAATTATTATT
1 TTAAAA-TAATATA
26779647 TTAAAA-AATTAATA
1 TTAAAATAA-T-ATA
*
26779661 TAAAAATAAATAGTAA
1 TTAAAAT-AATA-T-A
*
26779677 TAATAAATAATATA
1 TTA-AAATAATATA
*
26779691 TTAAAATAATTTA
1 TTAAAATAATATA
26779704 TTA
1 TTA
26779707 TATTATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
12 7 0.12
13 18 0.31
14 17 0.29
15 3 0.05
16 10 0.17
17 4 0.07
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (13 bp):
TTAAAATAATATA
Found at i:26780148 original size:2 final size:2
Alignment explanation
Indices: 26780141--26780168 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26780131 TAAAGTATTG
26780141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26780169 GAAAATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26781044 original size:46 final size:47
Alignment explanation
Indices: 26780975--26781082 Score: 121
Period size: 46 Copynumber: 2.3 Consensus size: 47
26780965 TGTGCTTCTG
* *
26780975 TGTAAGACCATATCTGGGATATGGCATCA-GTGTGATATGTGATCCA
1 TGTAAGACCATAGCTGAGATATGGCATCAGGTGTGATATGTGATCCA
* * * *
26781021 TGTAAGACCATGGCTGAGCTATGGCTTCAGTGTGTGATATGTGA-CTA
1 TGTAAGACCATAGCTGAGATATGGCATCAG-GTGTGATATGTGATCCA
26781068 TGTGCAAGACCATAG
1 TGT--AAGACCATAG
26781083 TTTTACTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
46 24 0.47
47 5 0.10
48 13 0.25
49 9 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (47 bp):
TGTAAGACCATAGCTGAGATATGGCATCAGGTGTGATATGTGATCCA
Found at i:26787491 original size:17 final size:18
Alignment explanation
Indices: 26787459--26787494 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
26787449 TGAATTTCTA
26787459 TCCAATTTATATCCTAAT
1 TCCAATTTATATCCTAAT
26787477 TCCAATTTA-ATCCTAAT
1 TCCAATTTATATCCTAAT
26787494 T
1 T
26787495 AACTCATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (18 bp):
TCCAATTTATATCCTAAT
Found at i:26788666 original size:3 final size:3
Alignment explanation
Indices: 26788653--26788683 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26788643 AAATTATTTC
26788653 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26788684 TATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:26804685 original size:8 final size:8
Alignment explanation
Indices: 26804672--26804703 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26804662 CTAGATCGGC
26804672 AAAAGCCG
1 AAAAGCCG
26804680 AAAAGCCG
1 AAAAGCCG
*
26804688 AAATGCCG
1 AAAAGCCG
26804696 AAAAGCCG
1 AAAAGCCG
26804704 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26804986 original size:28 final size:28
Alignment explanation
Indices: 26804953--26805040 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
26804943 TACTAGATTA
*
26804953 CCCTATGTATACAAAATTACCATTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
26804981 CCCTATGTATGCAAAATTACCA-TATAC
1 CCCTATGTATGCAAAATTACCATTATAC
* *
26805008 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
26805036 CCCTA
1 CCCTA
26805041 GGGTTAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 25 0.45
28 31 0.55
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (28 bp):
CCCTATGTATGCAAAATTACCATTATAC
Found at i:26805204 original size:27 final size:27
Alignment explanation
Indices: 26805156--26805234 Score: 104
Period size: 27 Copynumber: 2.8 Consensus size: 27
26805146 CTGGTGGCTA
*
26805156 TGCCACAAATTATCTGTTCTGGTAGCCC
1 TGCCACAAA-TATCTGTTCTGGTAGCAC
* *
26805184 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTAGCAC
26805211 TGCCACAAAATATCTGTATCTGGT
1 TGCCAC-AAATATCTGT-TCTGGT
26805235 GACTCTGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 22 0.49
28 17 0.38
29 6 0.13
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTAGCAC
Found at i:26805254 original size:55 final size:56
Alignment explanation
Indices: 26805146--26805260 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
26805136 AGGAAGCGTC
*
26805146 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTAGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTAGCCCTGCCACATATATCTGTAT
* * *
26805201 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGT-GACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTAG-CCCTGCCACATATATCTGTAT
26805257 CTGG
1 CTGG
26805261 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 31 0.60
56 20 0.38
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTAGCCCTGCCACATATATCTGTAT
Found at i:26806345 original size:11 final size:10
Alignment explanation
Indices: 26806317--26806350 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26806307 AGCCTGTAAG
26806317 TATTCTGAAT
1 TATTCTGAAT
*
26806327 TTTTCTGAAT
1 TATTCTGAAT
26806337 ATATTCTGAAT
1 -TATTCTGAAT
26806348 TAT
1 TAT
26806351 CTGTTTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:26812565 original size:8 final size:8
Alignment explanation
Indices: 26812552--26812583 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26812542 CTAGATCGGC
26812552 AAAAGCCG
1 AAAAGCCG
26812560 AAAAGCCG
1 AAAAGCCG
*
26812568 AAATGCCG
1 AAAAGCCG
26812576 AAAAGCCG
1 AAAAGCCG
26812584 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26812871 original size:28 final size:28
Alignment explanation
Indices: 26812831--26812921 Score: 157
Period size: 28 Copynumber: 3.3 Consensus size: 28
26812821 TGTACTAGAG
26812831 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
26812859 TACCCCTATGTATGCAAAATTACCA-TA
1 TACCCCTATGTATGCAAAATTACCATTA
* *
26812886 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATTACCATTA
26812914 TACCCCTA
1 TACCCCTA
26812922 GGGTTAATTT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.42
28 35 0.58
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:26813083 original size:26 final size:27
Alignment explanation
Indices: 26813027--26813115 Score: 119
Period size: 26 Copynumber: 3.2 Consensus size: 27
26813017 AGGAAGCGTC
26813027 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
*
26813055 CTGGTGGCCCTGCCAC-AATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
26813081 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
26813110 CTGGTG
1 CTGGTG
26813116 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
26 23 0.42
27 2 0.04
28 23 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:26830749 original size:20 final size:20
Alignment explanation
Indices: 26830721--26830760 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26830711 AAAAAGACCC
*
26830721 ATAATTATTC-ATCTAATATT
1 ATAACTATTCAAT-TAATATT
26830741 ATAACTATTCAATTAATATT
1 ATAACTATTCAATTAATATT
26830761 GTTTAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAACTATTCAATTAATATT
Found at i:26831331 original size:21 final size:22
Alignment explanation
Indices: 26831285--26831336 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
26831275 TTAAAATTTA
26831285 AAAATA-AAAAAATCATAAAAG
1 AAAATATAAAAAATCATAAAAG
*
26831306 CAAATATAAAAAAT-A-AAAATG
1 AAAATATAAAAAATCATAAAA-G
26831327 AAAATATAAA
1 AAAATATAAA
26831337 CCTTCATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 16 0.59
22 7 0.26
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (22 bp):
AAAATATAAAAAATCATAAAAG
Found at i:26831569 original size:21 final size:23
Alignment explanation
Indices: 26831545--26831587 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
26831535 TCATATATTG
26831545 ATATGTTT-TAT-GTATATTTTA
1 ATATGTTTATATAGTATATTTTA
*
26831566 ATATGTTTATATATTATATTTT
1 ATATGTTTATATAGTATATTTT
26831588 TATTTATGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
ATATGTTTATATAGTATATTTTA
Found at i:26831671 original size:13 final size:13
Alignment explanation
Indices: 26831639--26831663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26831629 ATGTAAGTTT
26831639 ATTTATTAATTAA
1 ATTTATTAATTAA
26831652 ATTTATTAATTA
1 ATTTATTAATTA
26831664 TTCTTATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTATTAATTAA
Found at i:26833253 original size:2 final size:2
Alignment explanation
Indices: 26833246--26833279 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26833236 TGATAGATGG
26833246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26833280 TGAGTATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26855574 original size:24 final size:24
Alignment explanation
Indices: 26855542--26855590 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
26855532 CAAGTTATGG
26855542 AGAGCAAAGAAAGTGCTAAAGCTA
1 AGAGCAAAGAAAGTGCTAAAGCTA
*
26855566 AGAGCAAAGAAAGTGCTAGAGCTA
1 AGAGCAAAGAAAGTGCTAAAGCTA
26855590 A
1 A
26855591 TTCACTCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.49, C:0.12, G:0.27, T:0.12
Consensus pattern (24 bp):
AGAGCAAAGAAAGTGCTAAAGCTA
Found at i:26858602 original size:21 final size:21
Alignment explanation
Indices: 26858576--26858629 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
26858566 TAACAGTGGT
*
26858576 AGTGAGATTAGTTATTGCAGC
1 AGTGAGATTAGATATTGCAGC
* *
26858597 -GATGAGATTGGATATTGTAGC
1 AG-TGAGATTAGATATTGCAGC
26858618 AGTGAGATTAGA
1 AGTGAGATTAGA
26858630 AATAGCAGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.31
Consensus pattern (21 bp):
AGTGAGATTAGATATTGCAGC
Found at i:26864119 original size:94 final size:92
Alignment explanation
Indices: 26863841--26864149 Score: 297
Period size: 94 Copynumber: 3.3 Consensus size: 92
26863831 AGGCCAACAC
* * *
26863841 CATGTCCCAGACATGGTCTTACACTAGCTCTCCATATCAGTGTCGATGCCATGTCCCATACATGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAGTGCCGATGCCATGTCCCAAACATGG
**
26863906 TCTTACACTAACACCTCCATATGT-GCCGATG
64 TCTTACACT---GGCTCCATATGTGGCCGATG
* * * *
26863937 CCATGTCCCAGACACGGTCTTACA-TTG-ACACATCT-AGTAGCCGATG-CATGTCCCAAACAT-
1 -CATGTCCCAGACA-TGTCTTACACTAGCTCTCATCTCAGT-GCCGATGCCATGTCCCAAACATG
* * *
26863997 GTCTTACACTGGCTTACATCACGAGGCCGATG
63 GTCTTACACTGGC-TCCAT-ATGTGGCCGATG
* * * * *
26864029 CATGTCCCACACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAGTGCCGATGCCATGTCCCAAACATGGTC
26864094 TTACACTGGCTCGCATAATGTGGCCGATG
66 TTACACTGGCTC-CAT-ATGTGGCCGATG
* *
26864123 CATGTCCCAGGCATGTCTTATACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26864150 ACACAAATGT
Statistics
Matches: 173, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
89 1 0.01
90 12 0.07
91 16 0.09
92 29 0.17
93 32 0.18
94 59 0.34
95 1 0.01
96 2 0.01
97 21 0.12
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAGTGCCGATGCCATGTCCCAAACATGGTC
TTACACTGGCTCCATATGTGGCCGATG
Found at i:26864122 original size:48 final size:46
Alignment explanation
Indices: 26863840--26864142 Score: 210
Period size: 46 Copynumber: 6.5 Consensus size: 46
26863830 GAGGCCAACA
* * *
26863840 CCATGTCCCAGACATGGTCTTACACTAGCTCTCCATATCAGTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT--GTGCCGATG
* **
26863889 CCATGTCCCATACATGGTCTTACACTAACACCTC-CATATGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACT---GGCTCACATATGTGCCGATG
* * * *
26863937 CCATGTCCCAGACACGGTCTTACA-TTG-ACACATCTAGTAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GT-GCCGATG
* * * *
26863983 -CATGTCCCAAACAT-GTCTTACACTGGCTTACATCACGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATG-TGCCGATG
* * * * * *
26864029 -CATGTCCCACACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAT--GTGCCGATG
* *
26864075 CCATGTCCCAGACATGGTTTTACACTGGCTCGCATAATGTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGT-GCCGATG
*
26864123 -CATGTCCCAGGCAT-GTCTTA
1 CCATGTCCCAGACATGGTCTTA
26864143 TACTAGCACA
Statistics
Matches: 203, Mismatches: 35, Indels: 35
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 16 0.08
46 59 0.29
47 28 0.14
48 52 0.26
49 26 0.13
50 5 0.02
52 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCACATATGTGCCGATG
Found at i:26870522 original size:58 final size:59
Alignment explanation
Indices: 26870460--26870587 Score: 170
Period size: 57 Copynumber: 2.2 Consensus size: 59
26870450 AATATAAATT
* **
26870460 CATTTTTCATTTTTATTTTGGAGAAAACCACGCTCATTTCCAAATGATTC-TATTTCTC
1 CATTTTTCATTTTAATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTTATTTCTC
* * *
26870518 CA-TTTTCATTTTAATTTTGGAGAAAATCATAATCATTTCCAAATGTTTCTTATTTCTC
1 CATTTTTCATTTTAATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTTATTTCTC
*
26870576 TATTTTATCATT
1 CATTTT-TCATT
26870588 CTATTCATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
57 41 0.68
58 11 0.18
59 3 0.05
60 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.48
Consensus pattern (59 bp):
CATTTTTCATTTTAATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTTATTTCTC
Found at i:26872737 original size:23 final size:23
Alignment explanation
Indices: 26872703--26872761 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
26872693 ATATGGGTAG
*
26872703 TCCACACAGGCCAGGCCATGTGA
1 TCCACACGGGCCAGGCCATGTGA
* *
26872726 TCCACAGGGGCCAGGCCGTGTGA
1 TCCACACGGGCCAGGCCATGTGA
26872749 TCCACACGGGCCA
1 TCCACACGGGCCA
26872762 AAGCCAATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.36, G:0.31, T:0.12
Consensus pattern (23 bp):
TCCACACGGGCCAGGCCATGTGA
Found at i:26875791 original size:10 final size:10
Alignment explanation
Indices: 26875776--26875809 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
26875766 AATTTAACAC
26875776 TTTTATATAA
1 TTTTATATAA
26875786 -TTT-TATAA
1 TTTTATATAA
26875794 TTTTATATAA
1 TTTTATATAA
26875804 TTTTAT
1 TTTTAT
26875810 TTTATGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 5 0.23
9 6 0.27
10 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTATATAA
Found at i:26875854 original size:21 final size:21
Alignment explanation
Indices: 26875808--26875848 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
26875798 ATATAATTTT
*
26875808 ATTTTATGAATTTTTTATAAA
1 ATTTTATGAATTTTTAATAAA
26875829 ATTTTAT-AATTTTTAATAAA
1 ATTTTATGAATTTTTAATAAA
26875849 CGTTTTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTTTATGAATTTTTAATAAA
Found at i:26876713 original size:7 final size:7
Alignment explanation
Indices: 26876701--26876725 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26876691 AGTTAATTTA
26876701 CAGTATT
1 CAGTATT
26876708 CAGTATT
1 CAGTATT
26876715 CAGTATT
1 CAGTATT
26876722 CAGT
1 CAGT
26876726 GTACATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (7 bp):
CAGTATT
Found at i:26877076 original size:17 final size:17
Alignment explanation
Indices: 26877056--26877099 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
26877046 AATATTTATG
*
26877056 TGAAAGTAATTTTCAAA
1 TGAAAGTAAATTTCAAA
*
26877073 TGAAAATTAAATTTCAAA
1 TG-AAAGTAAATTTCAAA
26877091 -GAAAGTAAA
1 TGAAAGTAAA
26877100 AAATTTTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 13 0.57
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.30
Consensus pattern (17 bp):
TGAAAGTAAATTTCAAA
Found at i:26878333 original size:25 final size:26
Alignment explanation
Indices: 26878305--26878358 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
26878295 CCAAAACATA
*
26878305 GTTAAGATTGAAAAATAAAAA-AAGG
1 GTTAAGATTGAAAAAAAAAAAGAAGG
26878330 GTTAAGATTGAAAAAAAAAAAGAAGG
1 GTTAAGATTGAAAAAAAAAAAGAAGG
26878356 GTT
1 GTT
26878359 TTTCCACTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 20 0.74
26 7 0.26
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.20
Consensus pattern (26 bp):
GTTAAGATTGAAAAAAAAAAAGAAGG
Found at i:26881560 original size:15 final size:16
Alignment explanation
Indices: 26881540--26881577 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
26881530 GAATATGATG
26881540 TTATTTTTATTCT-TT
1 TTATTTTTATTCTATT
*
26881555 TTA-TTTTATTTTATT
1 TTATTTTTATTCTATT
26881570 TTATTTTT
1 TTATTTTT
26881578 GTTTTCCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 8 0.40
15 8 0.40
16 4 0.20
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
TTATTTTTATTCTATT
Found at i:26881563 original size:5 final size:5
Alignment explanation
Indices: 26881544--26881576 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
26881534 ATGATGTTAT
*
26881544 TTTTA TTCT- TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
26881577 TGTTTTCCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:26885540 original size:42 final size:42
Alignment explanation
Indices: 26885451--26885606 Score: 161
Period size: 42 Copynumber: 3.7 Consensus size: 42
26885441 CTGAGGCTAT
* * *
26885451 ATGTAAGACCATATCTGGGATATGGCATTATTATAAGACTTT-
1 ATGTAAGACCATATCTGGGATATGACATTAATATGAGA-TTTC
* * * *
26885493 GTGTAAGACCATATCTAGGATATGAAATCAATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGACATTAATATGAGATTTC
* * * * * **
26885535 ATGTAAGACCATAGCTGGGCTATTAGCATTGATACGAGATCCC
1 ATGTAAGACCATATCTGGGATATGA-CATTAATATGAGATTTC
26885578 ATGTAAGACCATATCTGGGATATGACATT
1 ATGTAAGACCATATCTGGGATATGACATT
26885607 GGTGTAGTAC
Statistics
Matches: 91, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
41 3 0.03
42 55 0.60
43 33 0.36
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCATATCTGGGATATGACATTAATATGAGATTTC
Found at i:26887855 original size:40 final size:40
Alignment explanation
Indices: 26887743--26887895 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
26887733 GGATATAGCG
* * * * ***
26887743 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
26887783 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
26887823 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
26887863 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
26887896 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:26895823 original size:40 final size:40
Alignment explanation
Indices: 26895767--26895905 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 40
26895757 GGATATAGCG
* * * *
26895767 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
26895807 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
* ** **
26895847 ACTCGCACAAATGCCTTC--GATCTTAGTCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CATAACCCGGATTTAAGA
26895886 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
26895906 ATCTTAGTCC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.40
40 46 0.55
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:26895889 original size:39 final size:40
Alignment explanation
Indices: 26895808--26895958 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
26895798 GTTATAATAG
**
26895808 CTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGAA
26895848 CTCGCACAAATGCCTTC-GATCTTAGTCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
* **
26895887 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
* *
26895927 CTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
26895959 CATCATTCGA
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.34
40 53 0.53
41 11 0.11
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAA
Found at i:26908513 original size:21 final size:20
Alignment explanation
Indices: 26908489--26908528 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26908479 ACTTGTTTAA
26908489 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
26908510 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
26908529 ATCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:26908931 original size:17 final size:16
Alignment explanation
Indices: 26908909--26908940 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26908899 TAAGGTTCTA
26908909 TAGCTAATAGATACTTT
1 TAGCTAATAGA-ACTTT
26908926 TAGCTAATAGAACTT
1 TAGCTAATAGAACTT
26908941 CACTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
TAGCTAATAGAACTTT
Found at i:26913579 original size:6 final size:6
Alignment explanation
Indices: 26913568--26913599 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
26913558 ATTTTAAATT
26913568 TTCAAA TTCAAA TTCAAA TTCAAA TTCAAA TT
1 TTCAAA TTCAAA TTCAAA TTCAAA TTCAAA TT
26913600 TTTGACTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (6 bp):
TTCAAA
Found at i:26917141 original size:36 final size:36
Alignment explanation
Indices: 26917094--26917167 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
26917084 CCTAGCTGAT
26917094 TCAGCTAGGGAATGGTTATTTTATTTACCTCCTGGA
1 TCAGCTAGGGAATGGTTATTTTATTTACCTCCTGGA
26917130 TCAGCTAGGGAATGGTTATTTTATTTACCTCCTGGA
1 TCAGCTAGGGAATGGTTATTTTATTTACCTCCTGGA
26917166 TC
1 TC
26917168 CATTACAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (36 bp):
TCAGCTAGGGAATGGTTATTTTATTTACCTCCTGGA
Found at i:26922004 original size:24 final size:24
Alignment explanation
Indices: 26921965--26922029 Score: 84
Period size: 23 Copynumber: 2.8 Consensus size: 24
26921955 CAACCCAGTC
26921965 TTTCTTTTTATT-TTTATTTATTTT
1 TTTC-TTTTATTATTTATTTATTTT
26921989 TTTCTTTTATTATTTA-TTATTTT
1 TTTCTTTTATTATTTATTTATTTT
26922012 TTT-TTTT-TTATTTTATTT
1 TTTCTTTTATTA-TTTATTT
26922030 TAGTTAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
21 3 0.08
22 8 0.21
23 19 0.50
24 8 0.21
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTCTTTTATTATTTATTTATTTT
Found at i:26922042 original size:35 final size:33
Alignment explanation
Indices: 26921972--26922042 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
26921962 GTCTTTCTTT
* **
26921972 TTATTTTTATTTATTTTTTTCTTTTATTATTTA
1 TTATTTTTATTTATTTTTTTATTTTATTAAATA
* *
26922005 TTATTTTTTTTTTTTTATTTTATTTTAGTTAAATA
1 TTATTTTTATTTATTT-TTTTATTTTA-TTAAATA
26922040 TTA
1 TTA
26922043 ATAAATTTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 14 0.45
34 9 0.29
35 8 0.26
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.76
Consensus pattern (33 bp):
TTATTTTTATTTATTTTTTTATTTTATTAAATA
Found at i:26922199 original size:42 final size:42
Alignment explanation
Indices: 26922140--26922229 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 42
26922130 TCCATGCTGT
* * * *
26922140 CAAACAGTTCTATTCCAGCCCAGAAT-GCCATATCTCTGCAGC
1 CAAACAGTCCTATTCCAGCCCAGAATCCCCAAAAC-CTGCAGC
*
26922182 CAAACAGTCCTATTCCAGCCTAGAATCCCCAAAACCTGCAGC
1 CAAACAGTCCTATTCCAGCCCAGAATCCCCAAAACCTGCAGC
26922224 CAAACA
1 CAAACA
26922230 CCCCTTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 37 0.88
43 5 0.12
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.19
Consensus pattern (42 bp):
CAAACAGTCCTATTCCAGCCCAGAATCCCCAAAACCTGCAGC
Found at i:26923120 original size:118 final size:117
Alignment explanation
Indices: 26922895--26923106 Score: 388
Period size: 118 Copynumber: 1.8 Consensus size: 117
26922885 TGTTTTCCAT
*
26922895 GGTTATGAGTACAGCTTAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
1 GGTTATGAGTACAGCTAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
26922960 TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
66 TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
**
26923012 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCT-AAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
26923077 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
65 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
26923107 TTGGGTAAAA
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 14 0.15
118 77 0.85
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (117 bp):
GGTTATGAGTACAGCTAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
Found at i:26923256 original size:1 final size:1
Alignment explanation
Indices: 26923250--26923291 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
26923240 AATAAAATTT
* * *
26923250 AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26923292 TAAGTACTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:26923265 original size:12 final size:12
Alignment explanation
Indices: 26923250--26923291 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
26923240 AATAAAATTT
26923250 AAAAAAAAAAA-
1 AAAAAAAAAAAG
26923261 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
26923273 AAAAAAAAGAAG
1 AAAAAAAAAAAG
26923285 AAAAAAA
1 AAAAAAA
26923292 TAAGTACTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:26925473 original size:27 final size:28
Alignment explanation
Indices: 26925420--26925480 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
26925410 TAATATTTAC
*
26925420 ATATACCAACTTAATTTTTAATAAAAAA
1 ATATAACAACTTAATTTTTAATAAAAAA
26925448 ATATAACAACTTAATTTTTAAT-AAAAA
1 ATATAACAACTTAATTTTTAATAAAAAA
26925475 ATATAA
1 ATATAA
26925481 GAACACTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (28 bp):
ATATAACAACTTAATTTTTAATAAAAAA
Found at i:26936447 original size:18 final size:18
Alignment explanation
Indices: 26936426--26936464 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
26936416 TTATAGACTA
26936426 AATAGAATTCATTCTAAT
1 AATAGAATTCATTCTAAT
26936444 AATAGAATTCATTCTAAT
1 AATAGAATTCATTCTAAT
26936462 AAT
1 AAT
26936465 GATATAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (18 bp):
AATAGAATTCATTCTAAT
Found at i:26939411 original size:20 final size:21
Alignment explanation
Indices: 26939368--26939413 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26939358 ACTGTTTTGT
26939368 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
26939388 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
26939407 TATGGGC
1 TATGGGC
26939414 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:26939472 original size:59 final size:59
Alignment explanation
Indices: 26939406--26939541 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
26939396 AACTGTGTTA
*
26939406 ATATGGGCAAGGCCCAATATA-TCTCG-ACTTGTATA-GGGCTACGGCCCAGATTGATATTG
1 ATATGGGCAAGGCCCAATATACTCT-GTA-TTGTA-AGGGGCTACGGCCCAGATTAATATTG
* * *
26939465 ATATGGGCTAGGCCCAGTATACTCTGTTATTGTAAGGGGCTACGGCCTAGATTAATATTG
1 ATATGGGCAAGGCCCAATATACTCTG-TATTGTAAGGGGCTACGGCCCAGATTAATATTG
26939525 ATATGGGCTAAGGCCCA
1 ATATGGGC-AAGGCCCA
26939542 GTTAACACTG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
59 21 0.31
60 38 0.57
61 8 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (59 bp):
ATATGGGCAAGGCCCAATATACTCTGTATTGTAAGGGGCTACGGCCCAGATTAATATTG
Found at i:26940251 original size:14 final size:14
Alignment explanation
Indices: 26940232--26940258 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26940222 AACATGGATT
26940232 TTAAATAAAAATTG
1 TTAAATAAAAATTG
26940246 TTAAATAAAAATT
1 TTAAATAAAAATT
26940259 ATAAAACCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
TTAAATAAAAATTG
Found at i:26944125 original size:13 final size:13
Alignment explanation
Indices: 26944107--26944140 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26944097 GGGACACACG
26944107 CCCGTGTGACCTT
1 CCCGTGTGACCTT
26944120 CCCGTGTGACCTT
1 CCCGTGTGACCTT
26944133 CCCGTGTG
1 CCCGTGTG
26944141 CTTCACATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.38, G:0.26, T:0.29
Consensus pattern (13 bp):
CCCGTGTGACCTT
Found at i:26945951 original size:29 final size:29
Alignment explanation
Indices: 26945861--26946020 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
26945851 ACTCGATTTC
* * **
26945861 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
26945890 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
26945918 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
26945948 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26945977 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26946006 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
26946021 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:26947342 original size:25 final size:23
Alignment explanation
Indices: 26947307--26947354 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
26947297 ATCCACACTC
26947307 TTTTTTTTTTCATCATTTTCCTT
1 TTTTTTTTTTCATCATTTTCCTT
* *
26947330 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
26947355 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTTTCATCATTTTCCTT
Found at i:26954047 original size:29 final size:29
Alignment explanation
Indices: 26953957--26954116 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
26953947 ACTCGATTTC
* * **
26953957 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
26953986 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
26954014 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
26954044 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26954073 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26954102 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
26954117 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:26965801 original size:50 final size:49
Alignment explanation
Indices: 26965575--26965802 Score: 212
Period size: 50 Copynumber: 4.6 Consensus size: 49
26965565 CTAATACGCA
* * *
26965575 TAGTAGCCTGCACATAGTACTACACATGCGATCAACA-ATCCAGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCAACATAT-GAGTACACG
* * * *
26965624 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCATCTGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA--TCAACATATGAGTACACG
* * * * * *
26965674 TAGTAGCCTGCAATTAGTACTACACACGTGATCGAA-GTGATTGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGATC-AACAT-A-TGAGTACACG
* *
26965725 TAGTAGCATGCACTTAGTACTACACATGCGACTTAACAGTATGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACA-TATGAGTACACG
*
26965775 TAGTAGCCTACACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
26965803 TGTATTCACA
Statistics
Matches: 146, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
48 3 0.02
49 29 0.20
50 68 0.47
51 42 0.29
52 3 0.02
53 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGATCAACATATGAGTACACG
Found at i:26973201 original size:51 final size:50
Alignment explanation
Indices: 26973063--26973255 Score: 219
Period size: 50 Copynumber: 3.8 Consensus size: 50
26973053 AGCCGAAGCT
**
26973063 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCATC
1 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAATC
* * *
26973113 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-TC
* * * **
26973164 AT-TGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGAGACTTAA-C
1 ATCTGA-TACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAATC
* * * *
26973213 AGTATGATACACGTAGTAGCCTACACTTAGTACTACACACGTG
1 A-TCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTG
26973256 TATTCATAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.02
50 77 0.64
51 41 0.34
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAATC
Found at i:26973231 original size:101 final size:101
Alignment explanation
Indices: 26973072--26973255 Score: 298
Period size: 101 Copynumber: 1.8 Consensus size: 101
26973062 TATCTGATAC
* * * *
26973072 GCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACACGAGACCTCAACATATGATACACGTAGTAGCCTACA
26973137 CTTAGTACTACACACGTGATCGAAGTCATTGAGTAT
66 CTTAGTACTACACACGTGATCGAAGTCATTGAGTAT
* *
26973173 GCATAGTAGCCTGCACTTAGTACTACACATGAGA-CTTAACAGTATGATACACGTAGTAGCCTAC
1 GCATAGTAGCCTGCACTTAGTACTACACACGAGACCTCAACA-TATGATACACGTAGTAGCCTAC
26973237 ACTTAGTACTACACACGTG
65 ACTTAGTACTACACACGTG
26973256 TATTCATAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 5 0.07
101 71 0.93
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
GCATAGTAGCCTGCACTTAGTACTACACACGAGACCTCAACATATGATACACGTAGTAGCCTACA
CTTAGTACTACACACGTGATCGAAGTCATTGAGTAT
Found at i:26974792 original size:19 final size:19
Alignment explanation
Indices: 26974768--26974807 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26974758 ATATATATAA
26974768 ACATAACATTTTAGTCATC
1 ACATAACATTTTAGTCATC
26974787 ACATAACATTTTAGTCATC
1 ACATAACATTTTAGTCATC
26974806 AC
1 AC
26974808 CATTACCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (19 bp):
ACATAACATTTTAGTCATC
Found at i:26976072 original size:11 final size:11
Alignment explanation
Indices: 26976052--26976086 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26976042 GAAAGATGAC
*
26976052 CACTTTATTTT
1 CACTTAATTTT
*
26976063 CACTTAATTTA
1 CACTTAATTTT
26976074 CACTTAATTTT
1 CACTTAATTTT
26976085 CA
1 CA
26976087 ATCTACCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (11 bp):
CACTTAATTTT
Found at i:26987998 original size:19 final size:19
Alignment explanation
Indices: 26987974--26988015 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26987964 TTGAAAAATG
* *
26987974 GAAAAAAATGGGAAAGGAGA
1 GAAAAAAA-GAGAAAAGAGA
26987994 GAAAAAAAGAGAAAAGAGA
1 GAAAAAAAGAGAAAAGAGA
26988013 GAA
1 GAA
26988016 GAATGGATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (19 bp):
GAAAAAAAGAGAAAAGAGA
Found at i:26990830 original size:80 final size:80
Alignment explanation
Indices: 26990746--26990894 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
26990736 TATGGTAACC
* * * *
26990746 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
26990810 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
26990826 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
26990891 CCGG
66 CCGG
26990895 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:26990836 original size:40 final size:38
Alignment explanation
Indices: 26990787--26990894 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
26990777 ATCACGATTT
*
26990787 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
26990827 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
26990867 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
26990895 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Done.