Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 114 of 444
Found at i:28936693 original size:49 final size:50
Alignment explanation
Indices: 28936605--28936704 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
28936595 AATTGAAAAG
*
28936605 TAAGAGGAATTGCTTCTTATTTTCCTTTTTTTCACTCCAATTTGAATGAT
1 TAAGAGGAATTGCTTCTTATTTTCCTTTTTATCACTCCAATTTGAATGAT
28936655 TAAGAGGAATTGCTTCTTATTTTCC-TTTTATCACTCCAATTTGAATGAT
1 TAAGAGGAATTGCTTCTTATTTTCCTTTTTATCACTCCAATTTGAATGAT
28936704 T
1 T
28936705 TATTTTTATT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 24 0.49
50 25 0.51
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (50 bp):
TAAGAGGAATTGCTTCTTATTTTCCTTTTTATCACTCCAATTTGAATGAT
Found at i:28938570 original size:20 final size:20
Alignment explanation
Indices: 28938531--28938570 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
28938521 AATATTAAAA
* *
28938531 ATATTTTTATATTAATATTT
1 ATATTTTTATAATAAAATTT
28938551 ATATTTTTATAATAAAATTT
1 ATATTTTTATAATAAAATTT
28938571 TTAAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTTTTATAATAAAATTT
Found at i:28945772 original size:40 final size:39
Alignment explanation
Indices: 28945687--28945839 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
28945677 GGATATAACG
* * * * ***
28945687 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATGGGA
* * *
28945727 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATGGGA
* **
28945767 ACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGA-CTTAGCCCGGATATGGGA
*
28945807 ACTTAGCACAAA-GCCTTCAGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTC-GGACTTAGCCCGGA
28945840 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGACTTAGCCCGGATATGGGA
Found at i:28957477 original size:15 final size:15
Alignment explanation
Indices: 28957431--28957477 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
28957421 ACAAAATAAT
*
28957431 AACATAAATGACTAA
1 AACATAAATTACTAA
*
28957446 AACATAATATT--TTA
1 AACATAA-ATTACTAA
28957460 AACATAAATTACTAA
1 AACATAAATTACTAA
28957475 AAC
1 AAC
28957478 GCAACCTGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
13 3 0.12
14 9 0.35
15 12 0.46
16 2 0.08
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (15 bp):
AACATAAATTACTAA
Found at i:28959837 original size:63 final size:61
Alignment explanation
Indices: 28959684--28959840 Score: 205
Period size: 63 Copynumber: 2.6 Consensus size: 61
28959674 ATGATTATTG
* * * * *
28959684 TTATTAAATAT-AATT-A-AATAATAATAACAAATAATTTAATCATATTTTAATATAATTA
1 TTATTAAATATGAATTAATAAAAATAATAATATATAATTTAATAACATTTTAATATAATTA
*
28959742 TTATTAAATA-GAATTTAATAAAAATAAAAATATATAATTTAATAACATTCTTAATATAATTA
1 TTATTAAATATGAA-TTAATAAAAATAATAATATATAATTTAATAACATT-TTAATATAATTA
28959804 TTATTAAAATATGAATTAATAAAAATAATAATATATA
1 TTATT-AAATATGAATTAATAAAAATAATAATATATA
28959841 GCCTACTTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
58 12 0.14
59 2 0.02
60 1 0.01
61 24 0.28
62 17 0.20
63 26 0.31
64 3 0.04
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (61 bp):
TTATTAAATATGAATTAATAAAAATAATAATATATAATTTAATAACATTTTAATATAATTA
Found at i:28961978 original size:93 final size:93
Alignment explanation
Indices: 28961866--28962037 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
28961856 CGCCCATAAG
* *
28961866 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
28961931 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
28961959 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
28962024 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
28962038 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:28962034 original size:46 final size:46
Alignment explanation
Indices: 28961859--28962034 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
28961849 TGTAACCCGC
* * *
28961859 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
28961905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
28961955 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
28961998 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
28962035 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:28965081 original size:46 final size:46
Alignment explanation
Indices: 28965031--28965159 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
28965021 TGGTTGAGCA
*
28965031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
28965077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
28965123 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
28965160 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:28972609 original size:46 final size:46
Alignment explanation
Indices: 28972559--28972687 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
28972549 TGGTTGAGCA
*
28972559 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
28972605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
28972651 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
28972688 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:28976463 original size:30 final size:30
Alignment explanation
Indices: 28976408--28976538 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
28976398 ATAGTGAATC
*
28976408 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
* *
28976437 CGCACACTTAGTGCTGTATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
28976467 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
28976495 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
28976525 CGCACACTTAGTGC
1 CGCACACTTAGTGC
28976539 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 18 0.20
30 47 0.52
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:28976512 original size:58 final size:58
Alignment explanation
Indices: 28976407--28976538 Score: 185
Period size: 58 Copynumber: 2.3 Consensus size: 58
28976397 TATAGTGAAT
* * * * *
28976407 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTGTACAATTTTAAAC
*
28976466 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTGTACAATTTTAAAC
28976524 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
28976539 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 43 0.66
59 20 0.31
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTGTACAATTTTAAAC
Found at i:28987708 original size:17 final size:18
Alignment explanation
Indices: 28987686--28987719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
28987676 CACATTGAAG
28987686 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
28987703 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
28987720 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:29002512 original size:12 final size:12
Alignment explanation
Indices: 29002487--29002536 Score: 64
Period size: 12 Copynumber: 4.0 Consensus size: 12
29002477 TCAATCATTG
29002487 CATTTCTCATTTTT
1 CATTTC-CA-TTTT
29002501 CATTTCCATTTT
1 CATTTCCATTTT
**
29002513 CATTTCCATTCC
1 CATTTCCATTTT
29002525 CATTTCCATTTT
1 CATTTCCATTTT
29002537 GAGAAAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
12 24 0.75
13 2 0.06
14 6 0.19
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTCCATTTT
Found at i:29002531 original size:7 final size:6
Alignment explanation
Indices: 29002487--29002535 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
29002477 TCAATCATTG
* * *
29002487 CATTTC TCATTTTT CATTTC CATTTT CATTTC CATTCC CATTTC CATTT
1 CATTTC -CA-TTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
29002536 TGAGAAAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
6 28 0.80
7 4 0.11
8 3 0.09
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (6 bp):
CATTTC
Found at i:29006404 original size:15 final size:16
Alignment explanation
Indices: 29006364--29006410 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
29006354 TTGATAAACT
29006364 AAAAATTAAGTATTGA
1 AAAAATTAAGTATTGA
29006380 AAAAA-TAAGTA-T-A
1 AAAAATTAAGTATTGA
*
29006393 AAAAATTGAAGTGTTGA
1 AAAAATT-AAGTATTGA
29006410 A
1 A
29006411 TTTAAGTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
13 6 0.23
14 2 0.08
15 10 0.38
16 6 0.23
17 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (16 bp):
AAAAATTAAGTATTGA
Found at i:29014040 original size:19 final size:20
Alignment explanation
Indices: 29014013--29014055 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
29014003 TCTTTTTGCA
* * *
29014013 TTCATTCATTTGTATTACAT
1 TTCATTCATATGCATTAAAT
29014033 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCATTAAAT
29014052 TTCA
1 TTCA
29014056 CGAAAGACCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.16, G:0.05, T:0.49
Consensus pattern (20 bp):
TTCATTCATATGCATTAAAT
Found at i:29016510 original size:46 final size:46
Alignment explanation
Indices: 29016351--29016524 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
29016341 GGTTGAGCAT
*
29016351 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
29016396 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
29016441 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
29016489 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29016525 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.02
45 28 0.26
46 46 0.43
47 27 0.25
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:29025184 original size:45 final size:45
Alignment explanation
Indices: 29024927--29025184 Score: 170
Period size: 44 Copynumber: 5.8 Consensus size: 45
29024917 CACCATGGTG
* * *
29024927 AATCTTGTCTCCCTGAAGTTGCAGT-AGATCAAATTGAAG-TCA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTGA-AGCAGATTGAAGAT-AGCA
* * * * * * *
29024971 AATCTTATCTCCTTGAAGTTACAGAGGAGTATATTGAAGTTA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATAGCA
* * * * * * *
29025015 GATCTCATCTCCCTAAAGTGGCAGCGGAA-TAGATCGAAGAATAGCA
1 AATCTTATCTCCCTGAAGTTGCAG-TGAAGCAGATTGAAG-ATAGCA
* * * * * *
29025061 AACCTTATCTCCCTGAGGTTGCAGTGGAGCAGGTTAAAAATA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATAGCA
* * *
29025105 AGTCTTATTTCCCTGAAGTTGCAGTGGAA-TAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTGAAGATAGCA
* *
29025150 AATCTTATCTCTCTGAAGTTGCAGTAAAGCAGATT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATT
29025185 AAGGCTATAA
Statistics
Matches: 159, Mismatches: 46, Indels: 17
0.72 0.21 0.08
Matches are distributed among these distances:
44 93 0.58
45 41 0.26
46 25 0.16
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGATAGCA
Found at i:29025197 original size:89 final size:90
Alignment explanation
Indices: 29025024--29025357 Score: 250
Period size: 89 Copynumber: 3.7 Consensus size: 90
29025014 AGATCTCATC
* * * * * * * *
29025024 TCCCTAAAGTGGCAGCGGAATAGATCGAAGAATAGCAAACCTTATCTCCCTGAGGTTGCAGTGGA
1 TCCCTGAAGTTGCAGTGGAATAGATTGAAG-ATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGA
* ** *
29025089 GCAGGTTAAAAATACAAGTC-TTATT
65 GCAGATTAAAGCTATAAGTCATTATT
*
29025114 TCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAAAG
1 TCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAG
* *
29025179 CAGATTAAGGCTATAAGTCATATACT
66 CAGATTAAAGCTATAAGTCAT-TATT
* * * ** * *
29025205 T--CTGAAGTTGCAGTGGGTCGGATCAAATTTACCATGGCAAATCTTATCTCTCTGAAGTTGTAG
1 TCCCTGAAGTTGCAGT--G--GAAT-AGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAG
* * *
29025268 TAGAGCAAATTAAAGCCATTAA--CATTATC
61 TAGAGCAGATTAAAGCTA-TAAGTCATTATT
* * ** * *
29025297 TCCCTGAAGATGCAGTGGAGTACTTTGAA-ATTACCAAGTCTTATCTC-CTTGAAGTTGCAGT
1 TCCCTGAAGTTGCAGTGGAATAGATTGAAGA-TAGCAAATCTTATCTCTC-TGAAGTTGCAGT
29025358 GGAATAGACT
Statistics
Matches: 193, Mismatches: 39, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
88 2 0.01
89 85 0.44
90 29 0.15
91 5 0.03
92 4 0.02
93 6 0.03
94 59 0.31
95 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (90 bp):
TCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAG
CAGATTAAAGCTATAAGTCATTATT
Found at i:29025387 original size:227 final size:226
Alignment explanation
Indices: 29025059--29025540 Score: 617
Period size: 227 Copynumber: 2.1 Consensus size: 226
29025049 CGAAGAATAG
* * * * *
29025059 CAAACCTTATCTCCCTGAGGTTGCAGTGGAGCAGGTTAAAAATACAAGTCTTATTTCCCTGAAGT
1 CAAACATTATCTCCCTGAAGATGCAGTGGAGCACGTTAAAAATACAAGTCTTATCTCCCTGAAGT
* * * *
29025124 TGCAGTGGAATAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTA-AAGCAGATTAAG
66 TGCAGTGGAATAGACTAAAAATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAA-CAGATTAAG
* * * ** * *
29025188 GCTATAAGTCATATACTTCTGAAGTTGCAGTGGGTCGGATCAAATTTACCATGGCAAATCTTATC
130 GCTATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATC-AAGTTACCATGACAAATCTTATC
* *
29025253 TCTCTGAAGTTGTAGTAGAGCAAATTAAAGCCA
194 TCTCTGAAATTGCAGTAGAGCAAATTAAAGCCA
** * * * * *
29025286 TTAACATTATCTCCCTGAAGATGCAGTGGAGTACTTTGAAATTACCAAGTCTTATCTCCTTGAAG
1 CAAACATTATCTCCCTGAAGATGCAGTGGAGCACGTTAAAAATA-CAAGTCTTATCTCCCTGAAG
*
29025351 TTGCAGTGGAATAGACTAAAAATAGTAAA-CTTATCTCTCTAAAGTTGCAGTAGAACAGATTAAG
65 TTGCAGTGGAATAGACTAAAAATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAACAGATTAAG
* *
29025415 GCTATAAATCCTATACCTCTGAAGTTGCAGTAGGTCAAATCAAGTTACCATGACGAATCTTATCT
130 GCTATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAGTTACCATGACAAATCTTATCT
* * * *
29025480 CTCTGAAATTGCAGTGGAGCAGATTGAAGTCA
195 CTCTGAAATTGCAGTAGAGCAAATTAAAGCCA
* *
29025512 CAAACCTTATCCCCCTGAAGATGCAGTGG
1 CAAACATTATCTCCCTGAAGATGCAGTGG
29025541 GATAGAACGA
Statistics
Matches: 217, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
226 72 0.33
227 100 0.46
228 45 0.21
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (226 bp):
CAAACATTATCTCCCTGAAGATGCAGTGGAGCACGTTAAAAATACAAGTCTTATCTCCCTGAAGT
TGCAGTGGAATAGACTAAAAATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAACAGATTAAGG
CTATAAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAGTTACCATGACAAATCTTATCTC
TCTGAAATTGCAGTAGAGCAAATTAAAGCCA
Found at i:29036847 original size:15 final size:15
Alignment explanation
Indices: 29036827--29036856 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29036817 TATTAGTATC
*
29036827 TTTCCTAACTTAGAG
1 TTTCCTAAATTAGAG
29036842 TTTCCTAAATTAGAG
1 TTTCCTAAATTAGAG
29036857 ACATAGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (15 bp):
TTTCCTAAATTAGAG
Found at i:29041317 original size:125 final size:126
Alignment explanation
Indices: 29041054--29041487 Score: 676
Period size: 126 Copynumber: 3.5 Consensus size: 126
29041044 ATTAACTATT
*
29041054 AATTACGGAAAAAAGCT-TCCACGTGGACGCTCTTTTGCTACAGTACTATCTG-AAAAATAATTT
1 AATTACGGAAAAAAGCTCT-CACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTT
** * *
29041117 TGAGAAGATGTTTCTGAATGAATAGTGTCAAAAATGCTTTAACAAGGATGCACTGTCAGCAA
65 TGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* * *
29041179 AATTATGGAAAAAAGCTGC-CACGTGGATGCTCTTTTGCTACAGTAGTATCTGAAAAAATGATTT
1 AATTACGGAAAAAAGCT-CTCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTT
29041243 TGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
65 TGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* * * *
29041305 AATTACGGAAAAAAGCTCTTACGTGGATGCTCTTTTGCTACAGTGGTATCTGAAAAAATAAATTT
1 AATTACGGAAAAAAGCTCTCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
** *
29041370 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATACACTGTCAGCAA
66 GAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
* *
29041431 AATTACGGAAAAAAGCTCTTACGTAGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
1 AATTACGGAAAAAAGCTCTCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
29041488 GCCTTAGACT
Statistics
Matches: 286, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
125 48 0.17
126 238 0.83
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCTCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
GAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:29043296 original size:21 final size:20
Alignment explanation
Indices: 29043261--29043300 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
29043251 AAAATTGACT
*
29043261 TTTAGCGGCATTTTTTAAGCC
1 TTTAGCGGCA-CTTTTAAGCC
*
29043282 TTTAGCGGCGCTTTTAAGC
1 TTTAGCGGCACTTTTAAGC
29043301 GCCTCTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (20 bp):
TTTAGCGGCACTTTTAAGCC
Found at i:29043459 original size:43 final size:42
Alignment explanation
Indices: 29043398--29043575 Score: 207
Period size: 43 Copynumber: 4.2 Consensus size: 42
29043388 AAAAAAAATA
* * *
29043398 CCGCTAAAGAGCATGACCTTTAGCGGTGCTTTTGCCACAAACG
1 CCGCTAAAGAACATGACCTTTAGCGGCGCTTCT-CCACAAACG
* * *
29043441 CCGCTAAAGAGCATGACCTTTAGCGACGCTTCTCCCACAAACA
1 CCGCTAAAGAACATGACCTTTAGCGGCGCTTCT-CCACAAACG
* *
29043484 CC-CTAAAGAACATGACCTTTAGCGGCACTTCTCTCACAGACG
1 CCGCTAAAGAACATGACCTTTAGCGGCGCTTCTC-CACAAACG
* * *
29043526 CTGCTAAAGAACATGGCCTTTAGTGGCGCTTTCTCCAC-AACG
1 CCGCTAAAGAACATGACCTTTAGCGGCGC-TTCTCCACAAACG
29043568 CCGCTAAA
1 CCGCTAAA
29043576 AGTTGTTCTT
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 44 0.38
43 66 0.57
44 5 0.04
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (42 bp):
CCGCTAAAGAACATGACCTTTAGCGGCGCTTCTCCACAAACG
Found at i:29043575 original size:85 final size:86
Alignment explanation
Indices: 29043397--29043575 Score: 213
Period size: 85 Copynumber: 2.1 Consensus size: 86
29043387 AAAAAAAAAT
* ** * *
29043397 ACCGCTAAAGAGCATGACCTTTAGCGGTGCTTTTGCCACAAACGCCGCTAAAGAGCATGACCTTT
1 ACCGCTAAAGAACATGACCTTTAGCGGCACTTCTGCCACAAACGCCGCTAAAGAACATGACCTTT
29043462 AGCGACGCTTCTCCCACAAAC
66 AGCGACGCTTCTCCCACAAAC
* * *
29043483 ACC-CTAAAGAACATGACCTTTAGCGGCACTTCT-CTCACAGACGCTGCTAAAGAACATGGCCTT
1 ACCGCTAAAGAACATGACCTTTAGCGGCACTTCTGC-CACAAACGCCGCTAAAGAACATGACCTT
* *
29043546 TAGTGGCGCTT-TCTCCAC-AAC
65 TAGCGACGCTTCTC-CCACAAAC
*
29043567 GCCGCTAAA
1 ACCGCTAAA
29043576 AGTTGTTCTT
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
84 8 0.10
85 68 0.86
86 3 0.04
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (86 bp):
ACCGCTAAAGAACATGACCTTTAGCGGCACTTCTGCCACAAACGCCGCTAAAGAACATGACCTTT
AGCGACGCTTCTCCCACAAAC
Found at i:29048617 original size:29 final size:29
Alignment explanation
Indices: 29048584--29048743 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
29048574 GTGACGAGAT
29048584 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
29048613 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
29048642 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
29048671 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
29048700 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
29048729 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
29048744 GAAATCAAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:29051463 original size:14 final size:13
Alignment explanation
Indices: 29051414--29051464 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
29051404 TTTCTAACAA
29051414 TAAACCCTTAACCT
1 TAAACCC-TAACCT
* *
29051428 TAAACCCCAAACCA
1 TAAA-CCCTAACCT
29051442 TAAA-CCTACACCT
1 TAAACCCTA-ACCT
29051455 TAAACCCTAA
1 TAAACCCTAA
29051465 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
12 3 0.10
13 8 0.27
14 16 0.53
15 3 0.10
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAACCCTAACCT
Found at i:29051691 original size:21 final size:21
Alignment explanation
Indices: 29051652--29051691 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
29051642 CTCTAAACCA
*
29051652 TAAACCTTAAATTAAAAACTC
1 TAAACCTTAAAATAAAAACTC
29051673 TAAACC-TAAAATAATAAAC
1 TAAACCTTAAAATAA-AAAC
29051692 ATTATACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAACCTTAAAATAAAAACTC
Found at i:29051721 original size:43 final size:43
Alignment explanation
Indices: 29051673--29051846 Score: 108
Period size: 43 Copynumber: 4.1 Consensus size: 43
29051663 TTAAAAACTC
* * *
29051673 TAAACCTAAAATAATAAACATTATACCATAAACCCTAAACCCT
1 TAAACCTAAAATAATAAACATTAAATCATAAACCATAAACCCT
** * * * * *
29051716 TAAACC-ATGGATATTAAACCTTAAATCTTAAATCATAAA-CTT
1 TAAACCTA-AAATAATAAACATTAAATCATAAACCATAAACCCT
* * * * * *
29051758 TAAACCCCAAAATAATAAATATTATATCATAACCCCT-ATCCCT
1 TAAA-CCTAAAATAATAAACATTAAATCATAAACCATAAACCCT
*
29051801 TAAACTCTAAACCAT-A-AAACA-TAAAACATAAACCATAAACCCT
1 TAAAC-CTAAA--ATAATAAACATTAAATCATAAACCATAAACCCT
29051844 TAA
1 TAA
29051847 CCCCAACCCT
Statistics
Matches: 94, Mismatches: 29, Indels: 16
0.68 0.21 0.12
Matches are distributed among these distances:
42 20 0.21
43 70 0.74
44 2 0.02
45 2 0.02
ACGTcount: A:0.49, C:0.24, G:0.01, T:0.26
Consensus pattern (43 bp):
TAAACCTAAAATAATAAACATTAAATCATAAACCATAAACCCT
Found at i:29051818 original size:7 final size:7
Alignment explanation
Indices: 29051808--29051841 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
29051798 CCTTAAACTC
29051808 TAAACCA
1 TAAACCA
*
29051815 TAAAACA
1 TAAACCA
*
29051822 TAAAACA
1 TAAACCA
29051829 TAAACCA
1 TAAACCA
29051836 TAAACC
1 TAAACC
29051842 CTTAACCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCA
Found at i:29052314 original size:7 final size:7
Alignment explanation
Indices: 29052302--29052345 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
29052292 CCATATTCAC
29052302 CCCTAAA
1 CCCTAAA
29052309 CCCTAAA
1 CCCTAAA
*
29052316 CTCTAAA
1 CCCTAAA
29052323 CCCTAAA
1 CCCTAAA
**
29052330 TACTAAA
1 CCCTAAA
*
29052337 CACTAAA
1 CCCTAAA
29052344 CC
1 CC
29052346 ATAAGTCATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
CCCTAAA
Found at i:29052323 original size:14 final size:15
Alignment explanation
Indices: 29052304--29052344 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
29052294 ATATTCACCC
29052304 CTAAACCCTAAACT-
1 CTAAACCCTAAACTA
29052318 CTAAACCCTAAA-TA
1 CTAAACCCTAAACTA
*
29052332 CTAAACACTAAAC
1 CTAAACCCTAAAC
29052345 CATAAGTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 1 0.04
14 23 0.96
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
CTAAACCCTAAACTA
Found at i:29052327 original size:21 final size:21
Alignment explanation
Indices: 29052302--29052345 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
29052292 CCATATTCAC
* *
29052302 CCCTAAACCCTAAACTCTAAA
1 CCCTAAACACTAAACACTAAA
*
29052323 CCCTAAATACTAAACACTAAA
1 CCCTAAACACTAAACACTAAA
29052344 CC
1 CC
29052346 ATAAGTCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (21 bp):
CCCTAAACACTAAACACTAAA
Found at i:29052479 original size:39 final size:40
Alignment explanation
Indices: 29052379--29052481 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
29052369 TTTTACAGCA
*
29052379 TTTTTCAAAAAGCGCCCCTAATGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCG
* * * *
29052419 TTTTTCAGAAAGTGCCGCTAATGCTTGATCTATAGC-GCG
1 TTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCG
29052458 TTTTTCAAAAAG-GACCACTAATGC
1 TTTTTCAAAAAGCG-CCACTAATGC
29052482 CACTAAAGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.02
39 23 0.41
40 32 0.57
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCG
Found at i:29052633 original size:152 final size:143
Alignment explanation
Indices: 29052363--29052697 Score: 359
Period size: 153 Copynumber: 2.3 Consensus size: 143
29052353 ATAAACTAAA
* * * * * * * * *
29052363 TTAATTTTTTACAGCATTTTTCAAAAAGCGCCCCTAAT-GCTCGATCTATAGCGGCGTTTTTCAG
1 TTAATTTTTTACGGCGTTTTTTAGAAAGCGCCGCTAATAG-TCAACCTATAGCGGCG--TTTGAA
** * *
29052427 AAAGTGCCGCTAATGCTTGATCTATAGCGCGTTTTTCAAAAAGGACCACTAATGCCACTAAAGGT
63 AAAACGCCGCTAATGCTCGATCTATAGCGCGTTTTTCAAAAAGGACCACTAATGCCACTAAAGCT
29052492 CACATAAAACGACGGCGTTGTGC
128 CAC-----ACGA--GCGTTGTGC
*
29052515 TTAATTTTTTTGCGGCGTTTTTTAGAAAGCGCCGCTAATAGTCAACCTATAGCGGCGTTTGAAAA
1 TTAA-TTTTTTACGGCGTTTTTTAGAAAGCGCCGCTAATAGTCAACCTATAGCGGCGTTTGAAAA
* * *
29052580 AACGCCGCTGATGCTCGATCTATAGTGGCGTTTTTCAAAAAGCG-CCGCTAATGCCACTAAAGCT
65 AACGCCGCTAATGCTCGATCTATAG-CGCGTTTTTCAAAAAG-GACCACTAATGCCACTAAAGCT
*
29052644 CACACTAGCGTTGTGC
128 CACACGAGCGTTGTGC
* *
29052660 TTAATTTTTTACTGTGTTTTTTAGAAAGCGCCGCTAAT
1 TTAATTTTTTACGGCGTTTTTTAGAAAGCGCCGCTAAT
29052698 GCTCGATCTA
Statistics
Matches: 158, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
144 31 0.20
145 13 0.08
147 3 0.02
151 27 0.17
152 40 0.25
153 43 0.27
154 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (143 bp):
TTAATTTTTTACGGCGTTTTTTAGAAAGCGCCGCTAATAGTCAACCTATAGCGGCGTTTGAAAAA
ACGCCGCTAATGCTCGATCTATAGCGCGTTTTTCAAAAAGGACCACTAATGCCACTAAAGCTCAC
ACGAGCGTTGTGC
Found at i:29052728 original size:30 final size:30
Alignment explanation
Indices: 29052692--29052750 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
29052682 AGAAAGCGCC
* *
29052692 GCTAATGCTCGATCTATAGCGGTGTTTTTT
1 GCTAATGCTCAATCTATAGCGGCGTTTTTT
*
29052722 GCTAATGCTCAATCTATAGTGGCGTTTTT
1 GCTAATGCTCAATCTATAGCGGCGTTTTT
29052751 GGTCCTAGCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (30 bp):
GCTAATGCTCAATCTATAGCGGCGTTTTTT
Found at i:29054144 original size:39 final size:38
Alignment explanation
Indices: 29054060--29054144 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 38
29054050 ATATAAAAAA
*
29054060 TATTAAAAATACTGCCAAATTCAAAATAACATTTATTT
1 TATTAAAAATACTGCCAAATTCAAAATAACATTTATTG
* * * * * *
29054098 TAATAAAAATTATTGGCTAATTCAAAATAACGTTTGTTG
1 TATTAAAAA-TACTGCCAAATTCAAAATAACATTTATTG
29054137 TATTAAAA
1 TATTAAAA
29054145 TTAAAAAAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
38 8 0.21
39 30 0.79
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (38 bp):
TATTAAAAATACTGCCAAATTCAAAATAACATTTATTG
Found at i:29054306 original size:130 final size:123
Alignment explanation
Indices: 29054098--29054462 Score: 496
Period size: 130 Copynumber: 3.0 Consensus size: 123
29054088 ACATTTATTT
* * * * * *
29054098 TAATAAAAATTATTGGCTAATTCAAAATAACGTTTGTTGTATTAAAATTAAAAAAGTAAAGTACA
1 TAATAAAAA-TATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACA
29054163 ATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
65 ATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAA-AAA-AT---AA
29054227 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAAGTAAAGTAC
1 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATT--AAAAAAGTAAAGTAC
29054292 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATAT-----AAAAATAA
64 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAAAAAATAA
*
29054347 T-A-AAAAATATTGTCTAATTTAAAAGAACATTTATTTTAATAAAATTTAAAAAAGTAAAGTACA
1 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAA-TTAAAAAAGTAAAGTACA
* *
29054410 GTTAAAATATTAAAAACAAC-TTTATTTTATT-ATATGAAACTATATAAAAAAAA
65 ATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TAAAACTATATAAAAAAAA
29054463 GTTTCTACAA
Statistics
Matches: 218, Mismatches: 9, Indels: 26
0.86 0.04 0.10
Matches are distributed among these distances:
115 2 0.01
116 21 0.10
117 35 0.16
118 41 0.19
119 3 0.01
120 3 0.01
121 3 0.01
123 2 0.01
124 3 0.01
125 1 0.00
128 33 0.15
129 9 0.04
130 62 0.28
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (123 bp):
TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACAA
TTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAAAAAATAA
Found at i:29054424 original size:54 final size:56
Alignment explanation
Indices: 29054249--29054438 Score: 172
Period size: 54 Copynumber: 3.3 Consensus size: 56
29054239 TGGCTAATTT
* *
29054249 AAAAGAACATTTATTTTAATAAAATTAAAAAAAAGTAAAGTACAATTAAAATATTA
1 AAAACAACATTTATTTTAATAAAATTATAAAAAAGTAAAGTACAATTAAAATATTA
* * ** * * **
29054305 AAAACAACTTTTATTTTATTAATTAAAACTATATAAAAATAATAAAAAATATTGTCTAAT-TT-
1 AAAACAACATTTA--TT-TTAA-TAAAA-T-TATAAAAA-AGTAAAGTACAAT-TAAAATATTA
* *
29054367 AAAAGAACATTTATTTTAATAAAATT-TAAAAAAGTAAAGTACAGTTAAAATATTA
1 AAAACAACATTTATTTTAATAAAATTATAAAAAAGTAAAGTACAATTAAAATATTA
29054422 AAAACAAC-TTTATTTTA
1 AAAACAACATTTATTTTA
29054439 TTATATGAAA
Statistics
Matches: 104, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
53 4 0.04
54 19 0.18
55 13 0.12
56 12 0.12
57 1 0.01
58 7 0.07
59 8 0.08
60 7 0.07
61 1 0.01
62 18 0.17
63 10 0.10
64 4 0.04
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.35
Consensus pattern (56 bp):
AAAACAACATTTATTTTAATAAAATTATAAAAAAGTAAAGTACAATTAAAATATTA
Found at i:29054461 original size:118 final size:117
Alignment explanation
Indices: 29054218--29054459 Score: 409
Period size: 117 Copynumber: 2.1 Consensus size: 117
29054208 TAAAAAATAA
29054218 ATATAAAAATAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAA
1 ATATAAAAATAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAA
29054283 GTAAAGTACAATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACT
66 GTAAAGTACAATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACT
* *
29054335 ATATAAAAATAATAAAAAATATTGTCTAATTTAAAAGAACATTTATTTTAATAAAATT-TAAAAA
1 ATATAAAAATAAT-AAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAA
* *
29054399 AGTAAAGTACAGTTAAAATATTAAAAACAAC-TTTATTTTATT-ATATGAAACT
65 AGTAAAGTACAATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TAAAACT
29054451 ATATAAAAA
1 ATATAAAAA
29054460 AAAGTTTCTA
Statistics
Matches: 119, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
115 2 0.02
116 26 0.22
117 48 0.40
118 43 0.36
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (117 bp):
ATATAAAAATAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAA
GTAAAGTACAATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACT
Found at i:29054893 original size:18 final size:18
Alignment explanation
Indices: 29054867--29054909 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
29054857 GACTAGGAAA
* *
29054867 AGGAAACATAAAAGGGTT
1 AGGATACATAAAAGGGCT
*
29054885 AGGATACATATAAGGGCT
1 AGGATACATAAAAGGGCT
29054903 AGGATAC
1 AGGATAC
29054910 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:29055008 original size:30 final size:30
Alignment explanation
Indices: 29054972--29055028 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
29054962 TTCGGCCAAG
*
29054972 TGGTTGTGTGGGCACTGTTGATGGGCCCGA
1 TGGTTGTGTGGGCACTGCTGATGGGCCCGA
* *
29055002 TGGTTGTGTGGGCGCTGCTGGTGGGCC
1 TGGTTGTGTGGGCACTGCTGATGGGCC
29055029 TTCATCGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.05, C:0.18, G:0.47, T:0.30
Consensus pattern (30 bp):
TGGTTGTGTGGGCACTGCTGATGGGCCCGA
Found at i:29055539 original size:7 final size:7
Alignment explanation
Indices: 29055527--29055566 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
29055517 TTATATAGGT
29055527 AATACTA
1 AATACTA
*
29055534 AATACTT
1 AATACTA
*
29055541 AATACTT
1 AATACTA
29055548 AATACTA
1 AATACTA
29055555 AATACTA
1 AATACTA
29055562 AATAC
1 AATAC
29055567 GAAACGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.33
Consensus pattern (7 bp):
AATACTA
Found at i:29055552 original size:21 final size:21
Alignment explanation
Indices: 29055526--29055566 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
29055516 GTTATATAGG
*
29055526 TAATACTAAATACTTAATACT
1 TAATACTAAATACTAAATACT
29055547 TAATACTAAATACTAAATAC
1 TAATACTAAATACTAAATAC
29055567 GAAACGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (21 bp):
TAATACTAAATACTAAATACT
Found at i:29056732 original size:21 final size:21
Alignment explanation
Indices: 29056708--29056747 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
29056698 CAAAGCTTTT
29056708 TTTG-CAAAAATTAGAGAGAGC
1 TTTGACAAAAATT-GAGAGAGC
29056729 TTTGACAAAAATTGAGAGA
1 TTTGACAAAAATTGAGAGA
29056748 AATTTGAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (21 bp):
TTTGACAAAAATTGAGAGAGC
Found at i:29056753 original size:21 final size:22
Alignment explanation
Indices: 29056708--29056754 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
29056698 CAAAGCTTTT
**
29056708 TTTG-CAAAAATTAGAGAGAGC
1 TTTGACAAAAATTAGAGAGAAA
29056729 TTTGACAAAAATT-GAGAGAAA
1 TTTGACAAAAATTAGAGAGAAA
29056750 TTTGA
1 TTTGA
29056755 GCGAATTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.28
Consensus pattern (22 bp):
TTTGACAAAAATTAGAGAGAAA
Found at i:29056782 original size:22 final size:20
Alignment explanation
Indices: 29056744--29056783 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
29056734 CAAAAATTGA
*
29056744 GAGAAATTTGAGCGAATTTG
1 GAGAAATTTGAGAGAATTTG
29056764 GAGATAATTTAGAGAGAATT
1 GAGA-AATTT-GAGAGAATT
29056784 GTGAGAGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.40, C:0.03, G:0.28, T:0.30
Consensus pattern (20 bp):
GAGAAATTTGAGAGAATTTG
Found at i:29056789 original size:22 final size:20
Alignment explanation
Indices: 29056738--29056789 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
29056728 CTTTGACAAA
* *
29056738 AATTGAGAGAAATTTGAGCG
1 AATTGTGAGAAATTTGAGAG
29056758 AATT-TGGAGATAATTTAGAGAG
1 AATTGT-GAGA-AATTT-GAGAG
29056780 AATTGTGAGA
1 AATTGTGAGA
29056790 GGACTATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 8 0.31
21 5 0.19
22 12 0.46
23 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29
Consensus pattern (20 bp):
AATTGTGAGAAATTTGAGAG
Found at i:29072586 original size:17 final size:16
Alignment explanation
Indices: 29072555--29072588 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
29072545 AAATATTATG
29072555 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
29072571 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
29072588 A
1 A
29072589 CGCCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:29080147 original size:47 final size:45
Alignment explanation
Indices: 29080096--29080259 Score: 131
Period size: 47 Copynumber: 3.5 Consensus size: 45
29080086 AGGCCGGTGT
29080096 ATGTCCCAGACAT-GTCTTACACAGGTACTCATCTCTGTATCGATGCC
1 ATGTCCCAGACATGGTCTTACACAGG-ACTCAT-T-TGTATCGATGCC
* * * * *
29080143 ATGTCCCAGACATGGTCTTACACTGGCAATCATAAT-AAGGCTGATG-C
1 ATGTCCCAGACATGGTCTTACACAGG-ACTCAT-TTGTA-TC-GATGCC
* *
29080190 ATGTCCCAGACAT-GTCTTACACTA-GCCTTCATTTGGATGTCGATGCC
1 ATGTCCCAGACATGGTCTTACAC-AGGAC-TCATTT-G-TATCGATGCC
29080237 ATGTCCCAGACATGGTCTTACAC
1 ATGTCCCAGACATGGTCTTACAC
29080260 TGGCTCTCAT
Statistics
Matches: 93, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
45 1 0.01
46 19 0.20
47 44 0.47
48 29 0.31
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (45 bp):
ATGTCCCAGACATGGTCTTACACAGGACTCATTTGTATCGATGCC
Found at i:29080194 original size:94 final size:94
Alignment explanation
Indices: 29080096--29080305 Score: 259
Period size: 94 Copynumber: 2.2 Consensus size: 94
29080086 AGGCCGGTGT
29080096 ATGTCCCAGACATGTCTTACAC-AGGTAC-TCATCTCT-G-TATCGATGCCATGTCCCAGACATG
1 ATGTCCCAGACATGTCTTACACTA-G-ACTTCAT-T-TGGATATCGATGCCATGTCCCAGACATG
** *
29080157 GTCTTACACTGGCAATCATAATAAGGCTGATGC
62 GTCTTACACTGGCAATCATAATAAGGCCAAAGC
* *
29080190 ATGTCCCAGACATGTCTTACACTAGCCTTCATTTGGATGTCGATGCCATGTCCCAGACATGGTCT
1 ATGTCCCAGACATGTCTTACACTAGACTTCATTTGGATATCGATGCCATGTCCCAGACATGGTCT
** **
29080255 TACACTGGCTCTCATAATGTGGCCAAAGC
66 TACACTGGCAATCATAATAAGGCCAAAGC
*
29080284 ATGTCCCAGATATGT-TTACACT
1 ATGTCCCAGACATGTCTTACACT
29080306 GGCGCACAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 9
0.84 0.08 0.07
Matches are distributed among these distances:
92 1 0.01
93 10 0.10
94 90 0.88
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (94 bp):
ATGTCCCAGACATGTCTTACACTAGACTTCATTTGGATATCGATGCCATGTCCCAGACATGGTCT
TACACTGGCAATCATAATAAGGCCAAAGC
Found at i:29080287 original size:47 final size:44
Alignment explanation
Indices: 29080136--29080308 Score: 152
Period size: 47 Copynumber: 3.7 Consensus size: 44
29080126 ATCTCTGTAT
* *
29080136 CGATGCCATGTCCCAGACATGGTCTTACACTGGCAATCATAATAAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC-CTCATAAT-GGGC
* * * *
29080184 TGATGCATGTCCCAGACATGTCTTACACTAGCCTTCAT-TTGGATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCC-TCATAATGG--GC
29080230 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC-CTCATAATG-GGC
* * *
29080278 CAAAGCATGTCCCAGATATGT-TTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
29080309 GCACAATTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
44 1 0.01
45 11 0.11
46 23 0.22
47 41 0.39
48 24 0.23
49 3 0.03
50 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCCTCATAATGGGC
Found at i:29085135 original size:25 final size:25
Alignment explanation
Indices: 29085106--29085155 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
29085096 GCATATTTGT
29085106 TGAGTTTCACAAACTCCCGCTCATA
1 TGAGTTTCACAAACTCCCGCTCATA
29085131 TGAGTTTCACAAACTCCCGCTCATA
1 TGAGTTTCACAAACTCCCGCTCATA
29085156 CTCTGTCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28
Consensus pattern (25 bp):
TGAGTTTCACAAACTCCCGCTCATA
Found at i:29089453 original size:35 final size:35
Alignment explanation
Indices: 29089407--29089477 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
29089397 ATACAATAGT
29089407 TCGTTTGTGCTGCTTGAGAATGTGAGTCAATTTCC
1 TCGTTTGTGCTGCTTGAGAATGTGAGTCAATTTCC
*
29089442 TCGTTTGTGCTGTTTGAGAATGTGAGTCAATTTCC
1 TCGTTTGTGCTGCTTGAGAATGTGAGTCAATTTCC
29089477 T
1 T
29089478 TTCTTATGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.42
Consensus pattern (35 bp):
TCGTTTGTGCTGCTTGAGAATGTGAGTCAATTTCC
Found at i:29106978 original size:18 final size:18
Alignment explanation
Indices: 29106955--29106998 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
29106945 TTGGATATAT
*
29106955 TATTTATAATTGTGA-TTA
1 TATTTATAATTAT-ATTTA
*
29106973 TATTTATATTTATATTTA
1 TATTTATAATTATATTTA
29106991 TATTTATA
1 TATTTATA
29106999 GATAGAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (18 bp):
TATTTATAATTATATTTA
Found at i:29106981 original size:6 final size:6
Alignment explanation
Indices: 29106970--29106998 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
29106960 ATAATTGTGA
29106970 TTATAT TTATAT TTATAT TTATAT TTATA
1 TTATAT TTATAT TTATAT TTATAT TTATA
29106999 GATAGAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTATAT
Found at i:29107455 original size:7 final size:7
Alignment explanation
Indices: 29107439--29107481 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
29107429 ATTATAATAC
29107439 TTTT-AA
1 TTTTAAA
29107445 TTTTAAA
1 TTTTAAA
29107452 TTTTAAA
1 TTTTAAA
*
29107459 TTTTTTAA
1 -TTTTAAA
29107467 TTTTAAA
1 TTTTAAA
29107474 TTTTAAA
1 TTTTAAA
29107481 T
1 T
29107482 CAATTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
6 4 0.12
7 23 0.70
8 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (7 bp):
TTTTAAA
Found at i:29107465 original size:22 final size:22
Alignment explanation
Indices: 29107439--29107481 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
29107429 ATTATAATAC
29107439 TTTTAATTTTAAATTTTAAATT
1 TTTTAATTTTAAATTTTAAATT
29107461 TTTTAATTTTAAATTTTAAAT
1 TTTTAATTTTAAATTTTAAAT
29107482 CAATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTAATTTTAAATTTTAAATT
Found at i:29107468 original size:15 final size:15
Alignment explanation
Indices: 29107445--29107481 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
29107435 ATACTTTTAA
29107445 TTTTAAATTTTAAAT
1 TTTTAAATTTTAAAT
*
29107460 TTTTTAATTTTAAA-
1 TTTTAAATTTTAAAT
29107474 TTTTAAAT
1 TTTTAAAT
29107482 CAATTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAAATTTTAAAT
Found at i:29114147 original size:28 final size:28
Alignment explanation
Indices: 29114090--29114163 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
29114080 TACCAGAATA
*
29114090 TGTGGCACAGCCACCAG-AACAGATATT
1 TGTGGCATAGCCACCAGAAACAGATATT
*
29114117 TGTGGCGTAGCCACCAGAAACAGATATT
1 TGTGGCATAGCCACCAGAAACAGATATT
29114145 TGTGGCATAGCCACCAGAA
1 TGTGGCATAGCCACCAGAA
29114164 CGATTCCTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (28 bp):
TGTGGCATAGCCACCAGAAACAGATATT
Found at i:29129137 original size:53 final size:52
Alignment explanation
Indices: 29129011--29129221 Score: 197
Period size: 52 Copynumber: 4.1 Consensus size: 52
29129001 CACATTGTCA
* * *
29129011 CACATCACACACTGAAGCCATAGCCCTA-CCATGGTCTTACACGG-ATCACATAT
1 CACATCACAC-C-GATGCCATAGCCC-AGCTATGGTCTTATACGGAATCACATAT
* * *
29129064 --CAT---ATCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TAT
*
29129112 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACTAGAA-CACGA-AT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATAT
*** * *
29129164 CACATTGTACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCATATAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATAT
29129216 CACATC
1 CACATC
29129222 TTTTCCGTCA
Statistics
Matches: 129, Mismatches: 17, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
45 1 0.01
46 24 0.19
47 7 0.05
48 4 0.03
50 3 0.02
51 7 0.05
52 47 0.36
53 32 0.25
54 4 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (52 bp):
CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATAT
Found at i:29135171 original size:49 final size:49
Alignment explanation
Indices: 29135099--29135459 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
29135089 ATCAAGATTC
* * *
29135099 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
29135148 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
29135197 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
29135246 GGGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
29135295 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
29135344 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29135393 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29135442 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
29135460 ATGTGGTAAA
Statistics
Matches: 297, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 297 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:29135583 original size:37 final size:37
Alignment explanation
Indices: 29135528--29135611 Score: 143
Period size: 37 Copynumber: 2.2 Consensus size: 37
29135518 AACTTGGAAA
29135528 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTGAGACCCGATGACTACGTGTGGAGAT
29135566 TATGTCCGGGT-ACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTGA-GACCCGATGACTACGTGTGGAGAT
29135603 TATGTCCGG
1 TATGTCCGG
29135612 TAAGACTTCG
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.89
38 4 0.09
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
Found at i:29139923 original size:20 final size:20
Alignment explanation
Indices: 29139898--29139970 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
29139888 AGGGGCACAC
29139898 GCCCGTGTGGCCTAGAACAT
1 GCCCGTGTGGCCTAGAACAT
*
29139918 GCCCGTGTGGCCTAGAACAC
1 GCCCGTGTGGCCTAGAACAT
29139938 GCCCGTGTGGCCTAGAACAT
1 GCCCGTGTGGCCTAGAACAT
*
29139958 GCTCGTGTGGCCT
1 GCCCGTGTGGCCT
29139971 GCCCATTGGC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGGCCTAGAACAT
Found at i:29139938 original size:40 final size:40
Alignment explanation
Indices: 29139894--29139970 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
29139884 AGATAGGGGC
29139894 ACACGCCCGTGTGGCCTAGAACATGCCCGTGTGGCCTAGA
1 ACACGCCCGTGTGGCCTAGAACATGCCCGTGTGGCCTAGA
*
29139934 ACACGCCCGTGTGGCCTAGAACATGCTCGTGTGGCCT
1 ACACGCCCGTGTGGCCTAGAACATGCCCGTGTGGCCT
29139971 GCCCATTGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (40 bp):
ACACGCCCGTGTGGCCTAGAACATGCCCGTGTGGCCTAGA
Found at i:29140017 original size:13 final size:13
Alignment explanation
Indices: 29139996--29140027 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
29139986 CTGACTTTTC
29139996 CACACGGCCTGGG
1 CACACGGCCTGGG
*
29140009 CACATGGCCTGGG
1 CACACGGCCTGGG
29140022 CACACG
1 CACACG
29140028 CCCATGTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.38, G:0.34, T:0.09
Consensus pattern (13 bp):
CACACGGCCTGGG
Found at i:29140928 original size:52 final size:52
Alignment explanation
Indices: 29140732--29140931 Score: 177
Period size: 52 Copynumber: 4.0 Consensus size: 52
29140722 CACATCACAC
* * *
29140732 ACCGAAGCCATAGCCCTA-CCATGGTCTTACACGG-ATCACATAT----T-AT
1 ACCGATGCCATAGCCC-AGCTATGGTCTTATACGGAATCACATATCACATCAT
* * * * *
29140778 ACCGATGCCATATCTCAGATATGGTCTTATACGGAATCACATTATCATATCAC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCAT
* **
29140831 ACCGATG-CATAGCCCAGCTATGGTCTTATACTAGAA-CACGA-ATCACATTGT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCAT
* *
29140882 ACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCATATATCACATC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
29140932 TTTTCCGTCA
Statistics
Matches: 122, Mismatches: 19, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 26 0.21
47 6 0.05
48 3 0.02
51 17 0.14
52 57 0.47
53 12 0.10
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (52 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAT
Found at i:29160227 original size:47 final size:47
Alignment explanation
Indices: 29160176--29160269 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
29160166 GTTTAAAAGT
29160176 AGAAATAACATATTTTTTGATTAAGCAAGTGACGTGTTACCAGGGAA
1 AGAAATAACATATTTTTTGATTAAGCAAGTGACGTGTTACCAGGGAA
29160223 AGAAATAACATATTTTTTGATTAAGCAAGTGACGTGTTACCAGGGAA
1 AGAAATAACATATTTTTTGATTAAGCAAGTGACGTGTTACCAGGGAA
29160270 TTTTGAGGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (47 bp):
AGAAATAACATATTTTTTGATTAAGCAAGTGACGTGTTACCAGGGAA
Found at i:29165761 original size:30 final size:30
Alignment explanation
Indices: 29165725--29165798 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
29165715 ATAAATTGGG
*
29165725 AAAATGACCATTTTGTCCCTAGACTTTTAC
1 AAAATGACCATTTTGTCCCTAGACTTTCAC
29165755 AAAATGACCATTTTGTCCCTAGACTTTCAC
1 AAAATGACCATTTTGTCCCTAGACTTTCAC
*
29165785 AAAATGACTATTTT
1 AAAATGACCATTTT
29165799 ACCCTTAGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (30 bp):
AAAATGACCATTTTGTCCCTAGACTTTCAC
Found at i:29171352 original size:346 final size:347
Alignment explanation
Indices: 29170682--29171382 Score: 1278
Period size: 346 Copynumber: 2.0 Consensus size: 347
29170672 ATAATATAGC
*
29170682 AGTGGAAATGTGATATTTAACTCAGTTTTAATTAAGAAAAAATCAAAATTATTTTATGTGTATTT
1 AGTGG-AATGTGATATTCAACTCAGTTTTAATTAAGAAAAAATCAAAATTATTTTATGTGTATTT
29170747 AATTCTAAATCTATGTTTCAATATCTATTTGCAAATTAAATACCATGGATGCTATATAAACCCAA
65 AATTCTAAATCTATGTTTCAATATCTATTTGCAAATTAAATACCATGGATGCTATATAAACCCAA
*
29170812 AACCTAAGCCCCATGCCACAGTTCAAATAAAATAATACAGTCTTTGAATAACTAAAATTTCAAAT
130 AACCTAAGCCCCATGCCACAGTTCAAATAAAATAATACAATCTTTGAATAACTAAAATTTCAAAT
* * *
29170877 AATAGTCTAAAATACTTTTATGTAAAAACAATATGTGTCGAGTCCTCGAAATGTCGAGCACGCAT
195 AATAGTCTAAAATACTTTTATGTAAAAACAATATGTGTCAAGTCCTCCAAATGTCAAGCACGCAT
* *
29170942 CCTAAACTGGTGGGTTATCTGTAAAGATGAAAATAAAAAGAGGGAGCGAGCTTATGAAGCTCAGT
260 CCTAAACTGGTGGGCTATCTGTAAAAATGAAAATAAAAAGAGGGAGCGAGCTTATGAAGCTCAGT
29171007 GTGAATCTTATCACAAGTAAGTT
325 GTGAATCTTATCACAAGTAAGTT
29171030 AGTGGAATGTGATATTCAACTCAGTTTTAATTAAG-AAAAATCAAAATTATTTTATGTGTATTTA
1 AGTGGAATGTGATATTCAACTCAGTTTTAATTAAGAAAAAATCAAAATTATTTTATGTGTATTTA
*
29171094 ATTCTAAATTTATGTTTCAATATCTATTTGCAAATTAAATACCATGGATGCTATATAAACCCAAA
66 ATTCTAAATCTATGTTTCAATATCTATTTGCAAATTAAATACCATGGATGCTATATAAACCCAAA
*
29171159 ACCTAAGCCCCATGCCACAGTTCAAATAAAATAATACAATCTTTGAATAACTGAAATTTCAAATA
131 ACCTAAGCCCCATGCCACAGTTCAAATAAAATAATACAATCTTTGAATAACTAAAATTTCAAATA
* *
29171224 ATAGTCTAAAATACTTTTATGTAAAAACAATATGTGTCAAGTCCTCCCAATGTCAAGCCCGCATC
196 ATAGTCTAAAATACTTTTATGTAAAAACAATATGTGTCAAGTCCTCCAAATGTCAAGCACGCATC
*
29171289 CTAAACTGGTGGGCTATCTGTAAAAATGAAAATAAAAAGAGGGAGTGAGCTTATGAAGCTCAGTG
261 CTAAACTGGTGGGCTATCTGTAAAAATGAAAATAAAAAGAGGGAGCGAGCTTATGAAGCTCAGTG
29171354 TGAATCTTATCACAAGTAAGTT
326 TGAATCTTATCACAAGTAAGTT
29171376 AGTGGAA
1 AGTGGAA
29171383 ACAGTAGATG
Statistics
Matches: 341, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
346 307 0.90
347 29 0.09
348 5 0.01
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (347 bp):
AGTGGAATGTGATATTCAACTCAGTTTTAATTAAGAAAAAATCAAAATTATTTTATGTGTATTTA
ATTCTAAATCTATGTTTCAATATCTATTTGCAAATTAAATACCATGGATGCTATATAAACCCAAA
ACCTAAGCCCCATGCCACAGTTCAAATAAAATAATACAATCTTTGAATAACTAAAATTTCAAATA
ATAGTCTAAAATACTTTTATGTAAAAACAATATGTGTCAAGTCCTCCAAATGTCAAGCACGCATC
CTAAACTGGTGGGCTATCTGTAAAAATGAAAATAAAAAGAGGGAGCGAGCTTATGAAGCTCAGTG
TGAATCTTATCACAAGTAAGTT
Found at i:29171731 original size:96 final size:96
Alignment explanation
Indices: 29171598--29171806 Score: 249
Period size: 96 Copynumber: 2.2 Consensus size: 96
29171588 TTAGACTACG
* * ** * *
29171598 TTGTGGATAAACCACTGATCGTTACAGCTGAAATGCTAACGATAAAAATATTGGTGGATGAATCA
1 TTGTGGATGAACCACTGATCATTACAAATGAAATGCTAACGATAAAAATATTGGTGGATAAACCA
*
29171663 TCCATCAGTGCAGATAA-AAGATGCTAATACA
66 TCCATCAGTGAAGATAACAA-ATGCTAATACA
* * *
29171694 TTGTGGATGAACCACTGATCATTGCAAATGAACTGCTAACGATAAAACTATTGGTGGATAAACCA
1 TTGTGGATGAACCACTGATCATTACAAATGAAATGCTAACGATAAAAATATTGGTGGATAAACCA
* ** * * *
29171759 TCCTTTGGTGAAGATAACAACTGCTAGTACG
66 TCCATCAGTGAAGATAACAAATGCTAATACA
*
29171790 TTGTGGATGAACTACTG
1 TTGTGGATGAACCACTG
29171807 GTCGTACTGA
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 93 0.98
97 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (96 bp):
TTGTGGATGAACCACTGATCATTACAAATGAAATGCTAACGATAAAAATATTGGTGGATAAACCA
TCCATCAGTGAAGATAACAAATGCTAATACA
Found at i:29174538 original size:14 final size:14
Alignment explanation
Indices: 29174519--29174549 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
29174509 CAACCCCTAG
*
29174519 TTTACTGACCCAAT
1 TTTACTAACCCAAT
29174533 TTTACTAACCCAAT
1 TTTACTAACCCAAT
29174547 TTT
1 TTT
29174550 CGGGATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.42
Consensus pattern (14 bp):
TTTACTAACCCAAT
Found at i:29176549 original size:57 final size:58
Alignment explanation
Indices: 29176429--29176551 Score: 140
Period size: 57 Copynumber: 2.1 Consensus size: 58
29176419 TTACAGAAAG
* * * * * * * *
29176429 GATTTAGCCTGGACTGGTAATCCTGATATAAGCCCTGTTGAGCATATGTTATAGATAG
1 GATTTAGCCCGGACGGGTAATCCTGATATAAACCCTGATGAGCATATGTTAGAAACAA
* * *
29176487 GATTTAGCCCGGACGGGTAATCTTGAT-TAAACTCTGATGAGCATATGTTGGAAACAA
1 GATTTAGCCCGGACGGGTAATCCTGATATAAACCCTGATGAGCATATGTTAGAAACAA
29176544 GATTTAGC
1 GATTTAGC
29176552 TTGGACAAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
57 30 0.56
58 24 0.44
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (58 bp):
GATTTAGCCCGGACGGGTAATCCTGATATAAACCCTGATGAGCATATGTTAGAAACAA
Found at i:29179454 original size:45 final size:45
Alignment explanation
Indices: 29179379--29179591 Score: 216
Period size: 45 Copynumber: 4.8 Consensus size: 45
29179369 TTCATATTAT
* * ** *
29179379 GTGATATATGTGA-AGCATCCGAGCACGTTGAGTTAGTCCGAGTTC
1 GTGATATATGTGAGA-AATCCGAACTTGTTGAGTTAGTCCAAGTTC
* *
29179424 GTGATATATGTGAGAAATCCAAATTTGTTGAGTTAGTCCAAGTTC
1 GTGATATATGTGAGAAATCCGAACTTGTTGAGTTAGTCCAAGTTC
* * * * **
29179469 GTGATATATGTGA-AGCATCCGAGCTCGTTGAGTTGGTCTGAGTTC
1 GTGATATATGTGAGA-AATCCGAACTTGTTGAGTTAGTCCAAGTTC
* *
29179514 GTGATATATGTGAGAAATCCGAACTTGTTGATTTGGTCCAAGTTC
1 GTGATATATGTGAGAAATCCGAACTTGTTGAGTTAGTCCAAGTTC
* * * *
29179559 ATGATATATGTG-GAGATCTGAGCTTGTTGAGTT
1 GTGATATATGTGAGAAATCCGAACTTGTTGAGTT
29179592 GGTCTGAGTT
Statistics
Matches: 139, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
44 18 0.13
45 119 0.86
46 2 0.01
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (45 bp):
GTGATATATGTGAGAAATCCGAACTTGTTGAGTTAGTCCAAGTTC
Found at i:29179532 original size:90 final size:90
Alignment explanation
Indices: 29179379--29179602 Score: 342
Period size: 90 Copynumber: 2.5 Consensus size: 90
29179369 TTCATATTAT
* * *
29179379 GTGATATATGTGAAGCATCCGAGCACGTTGAGTTAGTCCGAGTTCGTGATATATGTGAGAAATCC
1 GTGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCGTGATATATGTGAGAAATCC
*
29179444 AAATTTGTTGAGTTAGTCCAAGTTC
66 AAACTTGTTGAGTTAGTCCAAGTTC
29179469 GTGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCGTGATATATGTGAGAAATCC
1 GTGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCGTGATATATGTGAGAAATCC
* * *
29179534 GAACTTGTTGATTTGGTCCAAGTTC
66 AAACTTGTTGAGTTAGTCCAAGTTC
* * * *
29179559 ATGATATATGTGGAG-ATCTGAGCTTGTTGAGTTGGTCTGAGTTC
1 GTGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTC
29179603 ATAATGGATG
Statistics
Matches: 123, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 27 0.22
90 96 0.78
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (90 bp):
GTGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCGTGATATATGTGAGAAATCC
AAACTTGTTGAGTTAGTCCAAGTTC
Found at i:29190599 original size:16 final size:16
Alignment explanation
Indices: 29190558--29190599 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
29190548 ATTTTGACAA
29190558 TATATCTTGG-ATTTC
1 TATATCTTGGAATTTC
* *
29190573 TAAATCATGGAATTTC
1 TATATCTTGGAATTTC
*
29190589 TTTATCTTGGA
1 TATATCTTGGA
29190600 TATCTCTATC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (16 bp):
TATATCTTGGAATTTC
Found at i:29193303 original size:48 final size:48
Alignment explanation
Indices: 29193232--29193519 Score: 396
Period size: 48 Copynumber: 6.0 Consensus size: 48
29193222 ACTGTGCTGA
29193232 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
29193280 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * * *
29193328 GTGTGCCAGTGTAAGACTATGTCTGGGATATGGCATCAGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
29193376 GTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
** * * * *
29193424 GCGTGTCAGTGTAAGAACATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
29193472 ATATGCCTATGTAAGACCATATCTGGGACATGGCATCAGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
29193520 GTGGATTCAT
Statistics
Matches: 213, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 213 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:29193394 original size:96 final size:96
Alignment explanation
Indices: 29193233--29193551 Score: 428
Period size: 96 Copynumber: 3.3 Consensus size: 96
29193223 CTGTGCTGAA
* *
29193233 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACC
1 TGTGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACC
29193298 ATGTCTGGGACATGGCATCGGCGATGATATG
66 ATGTCTGGGACATGGCATCGGCGATGATATG
* * * *
29193329 TGTGCCAGTGTAAGACTATGTCTGGGATATGGCATCAGCAATGATATGTGTGCCTGTGTAAGACC
1 TGTGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACC
* *
29193394 ATGTCTGGGACATGGCATTGGCAATGATATG
66 ATGTCTGGGACATGGCATCGGCGATGATATG
* * * * *
29193425 CGTGTCAGTGTAAGAAC-ATGTCTGGGACATGGCATCGGTGATGATATATATGCCTATGTAAGAC
1 TGTGCCAGTGTAAG-ACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGAC
* * *
29193489 CATATCTGGGACATGGCATCAGTGATGATATG
65 CATGTCTGGGACATGGCATCGGCGATGATATG
* *
29193521 TG-GATTCA-TGTAAGACTATGCCTGGGACATG
1 TGTG--CCAGTGTAAGACTATGTCTGGGACATG
29193552 ACATTGGTAC
Statistics
Matches: 195, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
95 3 0.02
96 187 0.96
97 5 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (96 bp):
TGTGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACC
ATGTCTGGGACATGGCATCGGCGATGATATG
Found at i:29193497 original size:144 final size:144
Alignment explanation
Indices: 29193233--29193558 Score: 431
Period size: 144 Copynumber: 2.3 Consensus size: 144
29193223 CTGTGCTGAA
* * * * *
29193233 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACC
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGATATACGTGCCAGTGTAAGAAC
* * * * *
29193298 ATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACTATGTCTGGGATATGGCA
66 ATGTCTGGGACATGGCATCGGCGATGATATATATGCCAGTGTAAGACCATATCTGGGACATGGCA
29193363 TCAGCAATGATATG
131 TCAGCAATGATATG
* *
29193377 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGATATGCGTGTCAGTGTAAGAAC
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGATATACGTGCCAGTGTAAGAAC
*
29193442 ATGTCTGGGACATGGCATCGGTGATGATATATATGCCTA-TGTAAGACCATATCTGGGACATGGC
66 ATGTCTGGGACATGGCATCGGCGATGATATATATGCC-AGTGTAAGACCATATCTGGGACATGGC
**
29193506 ATCAGTGATGATATG
130 ATCAGCAATGATATG
** * * * *
29193521 TG-GATTCATGTAAGACTATGCCTGGGACATGACATTGG
1 TGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATTGG
29193559 TACTTTAATT
Statistics
Matches: 159, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
143 2 0.01
144 156 0.98
145 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (144 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCAATGATATACGTGCCAGTGTAAGAAC
ATGTCTGGGACATGGCATCGGCGATGATATATATGCCAGTGTAAGACCATATCTGGGACATGGCA
TCAGCAATGATATG
Found at i:29193532 original size:48 final size:48
Alignment explanation
Indices: 29193241--29193551 Score: 319
Period size: 48 Copynumber: 6.5 Consensus size: 48
29193231 AATGTGCCTG
* * *
29193241 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATAT-GTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTC-A
*
29193289 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT-GTGCCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTCA
* * * * * *
29193336 GTGTAAGACTATGTCTGGGATATGGCATCAGCAATGATATGT-GTGCCTG
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTC-A
* * *
29193385 TGTAAGACCATGTCTGGGACATGGCATTGGCAATGATATG-CGTGTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTCA
* * * * *
29193432 GTGTAAGAACATGTCTGGGACATGGCATCGGTGATGATATAT-ATGCCTA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTC-A
* * *
29193481 TGTAAGACCATATCTGGGACATGGCATCAGTGATGATATGTGGAT-TCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGG-TGTCA
* *
29193529 TGTAAGACTATGCCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
29193552 ACATTGGTAC
Statistics
Matches: 226, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
48 223 0.99
49 2 0.01
50 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGTGTCA
Found at i:29194702 original size:15 final size:15
Alignment explanation
Indices: 29194682--29194730 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
29194672 GACTTAGTTT
29194682 TTATGATAGATGTTG
1 TTATGATAGATGTTG
*
29194697 TTATGAT-TA-GTT-
1 TTATGATAGATGTTG
*
29194709 TTATGAGAGATGTTG
1 TTATGATAGATGTTG
29194724 TTATGAT
1 TTATGAT
29194731 TAGCCAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 6 0.22
13 4 0.15
14 4 0.15
15 13 0.48
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (15 bp):
TTATGATAGATGTTG
Found at i:29194714 original size:27 final size:28
Alignment explanation
Indices: 29194675--29194733 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
29194665 GCATAGAGAC
*
29194675 TTAGTTTTTATGATAGATGTTGTTATGA
1 TTAGTTTTTATGAGAGATGTTGTTATGA
29194703 TTAG-TTTTATGAGAGATGTTGTTATGA
1 TTAGTTTTTATGAGAGATGTTGTTATGA
29194730 TTAG
1 TTAG
29194734 CCAAATGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (28 bp):
TTAGTTTTTATGAGAGATGTTGTTATGA
Found at i:29195933 original size:24 final size:24
Alignment explanation
Indices: 29195906--29195952 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
29195896 AGTATGGTAT
29195906 TGGAAATATATACATAGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
29195930 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
29195953 GTTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.17, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:29196120 original size:25 final size:23
Alignment explanation
Indices: 29196064--29196147 Score: 60
Period size: 25 Copynumber: 3.4 Consensus size: 23
29196054 CACATACAAA
*
29196064 AATACAATATTAAAAAAATACAT
1 AATATAATATTAAAAAAATACAT
* *
29196087 ATATGTAATATATAAAAAAATTGCAT
1 A-ATATAATAT-TAAAAAAA-TACAT
* * **
29196113 AATATAATGTTTAAATATTTACAT
1 AATATAAT-ATTAAAAAAATACAT
29196137 AATATATATAT
1 AATATA-ATAT
29196148 GCATAATAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
23 1 0.02
24 18 0.39
25 21 0.46
26 6 0.13
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.37
Consensus pattern (23 bp):
AATATAATATTAAAAAAATACAT
Found at i:29196684 original size:3 final size:3
Alignment explanation
Indices: 29196678--29196730 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
29196668 AAACATAAGC
* *
29196678 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29196726 TAA TA
1 TAA TA
29196731 TTATAAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29209309 original size:68 final size:68
Alignment explanation
Indices: 29209230--29209367 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
29209220 AAAATAACAG
* *
29209230 GATTATTATTGAAAGTTGTAACTTACTTGGAGATTTTATTTTGCAAGTGCGTGACATTCAAGATT
1 GATTATTATTGAAAGTTGTAACTTACTTGGACATTTTATTTTGCAAGTGCGTGACATTCAAGATC
29209295 AAT
66 AAT
*
29209298 GATTATTATTGAAAGTTGTAACTTACTTGGACATTTTATTTTGTAAGTGCGTGACATTCAAGATC
1 GATTATTATTGAAAGTTGTAACTTACTTGGACATTTTATTTTGCAAGTGCGTGACATTCAAGATC
29209363 AAT
66 AAT
29209366 GA
1 GA
29209368 AATCTTTAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (68 bp):
GATTATTATTGAAAGTTGTAACTTACTTGGACATTTTATTTTGCAAGTGCGTGACATTCAAGATC
AAT
Found at i:29209641 original size:2 final size:2
Alignment explanation
Indices: 29209634--29209664 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
29209624 CAAATAAATT
29209634 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29209665 TGTTCACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29211857 original size:2 final size:2
Alignment explanation
Indices: 29211850--29211894 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
29211840 TGTATCTTGT
29211850 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29211892 TA T
1 TA T
29211895 CTGTTTTCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29212302 original size:18 final size:19
Alignment explanation
Indices: 29212281--29212316 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
29212271 TAAAGCTTAT
*
29212281 ATATTT-TTTGAAAAAAAA
1 ATATTTGTTTCAAAAAAAA
29212299 ATATTTGTTTCAAAAAAA
1 ATATTTGTTTCAAAAAAA
29212317 CCAAAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (19 bp):
ATATTTGTTTCAAAAAAAA
Found at i:29213563 original size:23 final size:23
Alignment explanation
Indices: 29213537--29213595 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
29213527 ACAAAAGGTT
* *
29213537 AAAAATCTTT-ATTTATACAAAA
1 AAAAAACTTTAATTTACACAAAA
29213559 AAAAAACTTTAATTTACACAAAA
1 AAAAAACTTTAATTTACACAAAA
*
29213582 TATAAAACGTTTAA
1 -AAAAAAC-TTTAA
29213596 AGAAAACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.29
23 11 0.35
24 6 0.19
25 5 0.16
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAAAACTTTAATTTACACAAAA
Found at i:29214151 original size:16 final size:16
Alignment explanation
Indices: 29214130--29214172 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
29214120 GTGAAATTTA
29214130 AATATTTTATTAAAAT
1 AATATTTTATTAAAAT
*
29214146 AATATTTTAATTAAGAT
1 AATATTTT-ATTAAAAT
*
29214163 TAT-TTTTATT
1 AATATTTTATT
29214173 TAATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 12 0.50
17 9 0.38
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
AATATTTTATTAAAAT
Found at i:29214610 original size:31 final size:31
Alignment explanation
Indices: 29214575--29214634 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
29214565 CAAGAAGTCA
*
29214575 AACTAGTAGTGAAGAAAGAAGCAGGAAGTTG
1 AACTAATAGTGAAGAAAGAAGCAGGAAGTTG
29214606 AACTAATAGTGAAGAAAGAAGCAGGAAGT
1 AACTAATAGTGAAGAAAGAAGCAGGAAGT
29214635 CGAAAGTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.48, C:0.07, G:0.30, T:0.15
Consensus pattern (31 bp):
AACTAATAGTGAAGAAAGAAGCAGGAAGTTG
Found at i:29214800 original size:29 final size:29
Alignment explanation
Indices: 29214767--29214833 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
29214757 CTCATTCATG
*
29214767 ACAAACCCAACAATATCATCCCTCACCAA
1 ACAAACCCAACAACATCATCCCTCACCAA
29214796 ACAAACCCAACAACATCATCCCTCACCAA
1 ACAAACCCAACAACATCATCCCTCACCAA
*
29214825 ATAAACCCA
1 ACAAACCCA
29214834 CATTCAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.46, C:0.42, G:0.00, T:0.12
Consensus pattern (29 bp):
ACAAACCCAACAACATCATCCCTCACCAA
Found at i:29215548 original size:16 final size:16
Alignment explanation
Indices: 29215527--29215562 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
29215517 ATTTTATTTA
29215527 ATTTAAATAAAAAAAT
1 ATTTAAATAAAAAAAT
*
29215543 ATTT-AATAACAAAAT
1 ATTTAAATAAAAAAAT
29215558 ATTTA
1 ATTTA
29215563 TTATTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTTAAATAAAAAAAT
Found at i:29221239 original size:1 final size:1
Alignment explanation
Indices: 29221235--29221269 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
29221225 ACTGGATTTC
* *
29221235 TTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
29221270 GCTCGGAGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:29221246 original size:12 final size:11
Alignment explanation
Indices: 29221231--29221266 Score: 56
Period size: 10 Copynumber: 3.3 Consensus size: 11
29221221 TTTGACTGGA
29221231 TTTCTTTTTCTT
1 TTTCTTTTT-TT
29221243 TTTCTTTTTTT
1 TTTCTTTTTTT
29221254 TTT-TTTTTTT
1 TTTCTTTTTTT
29221264 TTT
1 TTT
29221267 TTTGCTCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.42
11 5 0.21
12 9 0.38
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:29226850 original size:41 final size:41
Alignment explanation
Indices: 29226805--29226890 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
29226795 CAAAGGAATG
*
29226805 TTAGAGTAACTGATTAAGTTAGTTAATTTGTCAGTTGTTAA
1 TTAGAGTAACTGATTAAGTCAGTTAATTTGTCAGTTGTTAA
*
29226846 TTAGAGTAACTGATTAAGTCAGTTAATTTGTTAGTTGTTAA
1 TTAGAGTAACTGATTAAGTCAGTTAATTTGTCAGTTGTTAA
29226887 TTAG
1 TTAG
29226891 CTGACAGTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (41 bp):
TTAGAGTAACTGATTAAGTCAGTTAATTTGTCAGTTGTTAA
Found at i:29233017 original size:41 final size:41
Alignment explanation
Indices: 29232972--29233088 Score: 125
Period size: 41 Copynumber: 3.0 Consensus size: 41
29232962 CGACATTGAG
* *
29232972 TCGATGAGACACTAGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAC
* * * *
29233013 TCGATGAGGCACTGGGTGCCAATTTACT--TT-GGTTTAGC
1 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAC
* * *
29233051 T-GATGAGACACTGGGTGTCAAATTATTACTTCGAATTA
1 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTA
29233089 TCCGGCGAGG
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
37 22 0.36
38 6 0.10
39 4 0.07
40 4 0.07
41 25 0.41
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (41 bp):
TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAC
Found at i:29241634 original size:49 final size:49
Alignment explanation
Indices: 29241377--29241685 Score: 184
Period size: 46 Copynumber: 6.6 Consensus size: 49
29241367 AGTGGTATGT
* * * *
29241377 GAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGC-CAC-AT-CATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-CGATAGATGA
* * * **
29241423 GTGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGTATTG--AGATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGA
* * * *
29241469 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCAGGATATA-CA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-C--GATAGATGA
* * * ** *
29241518 -AGCTAGTGTAAGACCTATCTGGGACATGGCATCAGC-TTG-TTG-T-A
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGA
* * * *
29241562 -TGTCAGTATAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGA
* * *
29241610 GAGCCAGTGTAAGACCTGTCTGGGACATGGTATCGGC-CTTGATATATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-CGATAGATGA
* * * *
29241659 AAGTCAGTGTAAGACTTGTCTAGGACA
1 GAGCCAGTGTAAGACCTGTCTGGGACA
29241686 CGACATCGAC
Statistics
Matches: 205, Mismatches: 42, Indels: 29
0.74 0.15 0.11
Matches are distributed among these distances:
44 30 0.15
45 2 0.01
46 72 0.35
47 1 0.00
48 28 0.14
49 70 0.34
50 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGA
Found at i:29241693 original size:98 final size:91
Alignment explanation
Indices: 29241522--29241736 Score: 214
Period size: 98 Copynumber: 2.3 Consensus size: 91
29241512 TATACAAGCT
* * * *
29241522 AGTGTAAGACCTATCTGGGACATGGCATCAGCTTGTTGTATGTCAGTATAAGACCTGTCTGGGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGAAAGTCAGTATAAGACCTGTCTAGGAC
* * *
29241587 ATGGCATCGACACCGATAGATGAGAGCC
66 ACGACATCGACACCAAT-G-TGAGAGCC
* * * *
29241615 AGTGTAAGACCTGTCTGGGACATGGTATCGGCCTTGATATATGAAAGTCAGTGTAAGACTTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTG---T-TGAAAGTCAGTATAAGACCTGTCT
** **
29241680 AGGACACGACATCGACATTAATGTGCTAGCC
61 AGGACACGACATCGACACCAATGTGAGAGCC
*
29241711 AGAGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
29241737 AGTCGGCATT
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 28 0.28
94 4 0.04
96 16 0.16
97 16 0.16
98 36 0.36
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (91 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGAAAGTCAGTATAAGACCTGTCTAGGAC
ACGACATCGACACCAATGTGAGAGCC
Found at i:29248366 original size:21 final size:22
Alignment explanation
Indices: 29248337--29248378 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
29248327 AGGTTCACAC
* *
29248337 GCCCGTGTGG-CCCAAGGGCAT
1 GCCCATGTGGTCCAAAGGGCAT
29248358 GCCCATGTGGTCCAAAGGGCA
1 GCCCATGTGGTCCAAAGGGCA
29248379 CACCTGTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.19, C:0.31, G:0.36, T:0.14
Consensus pattern (22 bp):
GCCCATGTGGTCCAAAGGGCAT
Found at i:29249286 original size:312 final size:311
Alignment explanation
Indices: 29248710--29249333 Score: 1212
Period size: 312 Copynumber: 2.0 Consensus size: 311
29248700 GACACACGCC
*
29248710 AGTGTGTCTGCCCGTGTGGACAAAATAAAGCTATTTCTAGCTTCATTTCTCACCTAAATTTTACC
1 AGTGTGTCTGACCGTGTGGACAAAATAAAGCTATTTCTAGCTTCATTTCTCACCTAAATTTTACC
29248775 ATTATCCTGCATTAAAACTTACATCCAAATACCAACAAATCCAAGCATTGATTTTAAACAAATAT
66 ATTATCCTGCATTAAAACTTACATCCAAATACCAACAAATCCAAGCATTGATTTTAAACAAATAT
29248840 TAACATCTAATATTATATAACATAGCATCCATACATGTTTAAATTCTTACCTTTGTTTAACCTAA
131 TAACATCTAATATTATATAACATAGCATCCATACATGTTTAAATTCTTACCTTTGTTTAACCTAA
*
29248905 ACATTGAACATCATTTGGTCATTAATATTTAACACATAAGTGTTTATCGTGACATTATGCTTTAT
196 ACATTGAACATCATTTGGTCATTAATATTTAACACATAAGTGTTTATCATGACATTATGCTTTAT
29248970 AAGTACATAAACATACCATTATTAGCCATTCCAATGGCTAGATTACAAATA
261 AAGTACATAAACATACCATTATTAGCCATTCCAATGGCTAGATTACAAATA
29249021 AGTGTGTCTAGACCGTGTGGACAAAATAAAGCTATTTCTAGCTTCATTTCTCACCTAAATTTTAC
1 AGTGTGTCT-GACCGTGTGGACAAAATAAAGCTATTTCTAGCTTCATTTCTCACCTAAATTTTAC
29249086 CATTATCCTGCATTAAAACTTACATCCAAATACCAACAAATCCAAGCATTGATTTTAAACAAATA
65 CATTATCCTGCATTAAAACTTACATCCAAATACCAACAAATCCAAGCATTGATTTTAAACAAATA
29249151 TTAACATCTAATATTATATAACATAGCATCCATACATGTTTAAATTCTTACCTTTGTTTAACCTA
130 TTAACATCTAATATTATATAACATAGCATCCATACATGTTTAAATTCTTACCTTTGTTTAACCTA
*
29249216 AACATTGAACATCATTTGGTCATTTATATTTAACACATAAGTGTTTATCATGACATTATGCTTTA
195 AACATTGAACATCATTTGGTCATTAATATTTAACACATAAGTGTTTATCATGACATTATGCTTTA
29249281 TAAGTACATAAACATACCATTATTAGCCATTCCAATGGCTAGATTACAAATA
260 TAAGTACATAAACATACCATTATTAGCCATTCCAATGGCTAGATTACAAATA
29249333 A
1 A
29249334 CATATTTAAG
Statistics
Matches: 309, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
311 9 0.03
312 300 0.97
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (311 bp):
AGTGTGTCTGACCGTGTGGACAAAATAAAGCTATTTCTAGCTTCATTTCTCACCTAAATTTTACC
ATTATCCTGCATTAAAACTTACATCCAAATACCAACAAATCCAAGCATTGATTTTAAACAAATAT
TAACATCTAATATTATATAACATAGCATCCATACATGTTTAAATTCTTACCTTTGTTTAACCTAA
ACATTGAACATCATTTGGTCATTAATATTTAACACATAAGTGTTTATCATGACATTATGCTTTAT
AAGTACATAAACATACCATTATTAGCCATTCCAATGGCTAGATTACAAATA
Found at i:29250031 original size:58 final size:57
Alignment explanation
Indices: 29249898--29250038 Score: 160
Period size: 57 Copynumber: 2.5 Consensus size: 57
29249888 TAACATAAAA
* **
29249898 CAGGATTACCAGTCCAGGCTAAATCGTTTTTGTAAAATATGCTCAGAAGAGTTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAAAATATGCTCAGAAGAGTTCAAT
* * * * * *
29249955 TATGATTACTAGTCCAGGCTGAATCCTAATTGTAACATATGCTCA-AGAGGGATT-ATAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAAAATATGCTCAGA-AGAG-TTCA-AT
29250013 CAGGATTACCAGTCCAGGCTAAATCC
1 CAGGATTACCAGTCCAGGCTAAATCC
29250039 CGTCAGCAAC
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
56 1 0.01
57 41 0.60
58 26 0.38
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAAAATATGCTCAGAAGAGTTCAAT
Found at i:29250863 original size:23 final size:23
Alignment explanation
Indices: 29250833--29250878 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
29250823 TAAGCCAAGA
29250833 AAGTTTCGTCTCTCTCTCCTAGG
1 AAGTTTCGTCTCTCTCTCCTAGG
29250856 AAGTTTCGTCTCTCTCTCCTAGG
1 AAGTTTCGTCTCTCTCTCCTAGG
29250879 GTTTCCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.30, G:0.17, T:0.39
Consensus pattern (23 bp):
AAGTTTCGTCTCTCTCTCCTAGG
Found at i:29256739 original size:32 final size:32
Alignment explanation
Indices: 29256703--29256766 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
29256693 AACCCTAGTT
29256703 AATATTAACTAGGGTTGCCACCACCTATACTC
1 AATATTAACTAGGGTTGCCACCACCTATACTC
29256735 AATATTAACTAGGGTTGCCACCACCTATACTC
1 AATATTAACTAGGGTTGCCACCACCTATACTC
29256767 CTAATTAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (32 bp):
AATATTAACTAGGGTTGCCACCACCTATACTC
Found at i:29258505 original size:2 final size:2
Alignment explanation
Indices: 29258492--29258528 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
29258482 GATAGTATTT
*
29258492 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29258529 TATTCATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:29259189 original size:26 final size:26
Alignment explanation
Indices: 29259139--29259189 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
29259129 CCTTAGTCTA
*
29259139 AAAATTATTATTTATATCATAATTTT
1 AAAATTATTATTTATATAATAATTTT
29259165 AAAATTATT-TTGTAT-TAATATATTT
1 AAAATTATTATT-TATATAATA-ATTT
29259190 ACCTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (26 bp):
AAAATTATTATTTATATAATAATTTT
Found at i:29259842 original size:6 final size:6
Alignment explanation
Indices: 29259831--29259864 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
29259821 GTAAAACATA
29259831 ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
29259865 AAAGTCACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:29261186 original size:40 final size:40
Alignment explanation
Indices: 29261142--29261221 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
29261132 TATCCACATG
*
29261142 CAACAAACCGACAGTTTCACCATCTAATAATGGATTCTCT
1 CAACAAACCGACAGATTCACCATCTAATAATGGATTCTCT
29261182 CAACAAACCGACAGATTCACCATCTAATAATGGATTCTCT
1 CAACAAACCGACAGATTCACCATCTAATAATGGATTCTCT
29261222 TTCTCATAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (40 bp):
CAACAAACCGACAGATTCACCATCTAATAATGGATTCTCT
Found at i:29261616 original size:14 final size:14
Alignment explanation
Indices: 29261578--29261620 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
29261568 CAAAATGTAC
29261578 AATATAATTAAA-T
1 AATATAATTAAATT
29261591 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
29261606 AA-ATAATTTAATT
1 AATATAATTAAATT
29261619 AA
1 AA
29261621 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:29267340 original size:40 final size:41
Alignment explanation
Indices: 29267296--29267378 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
29267286 ATAAGCTTTG
29267296 AAGCTTTCATATT-AAAAAATATAATAATATGATTGTCATC
1 AAGCTTTCATATTAAAAAAATATAATAATATGATTGTCATC
29267336 AAGCTTTCATATTAAAAAAATATAATAATATGATTGTCATC
1 AAGCTTTCATATTAAAAAAATATAATAATATGATTGTCATC
29267377 AA
1 AA
29267379 AGTAATTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 13 0.31
41 29 0.69
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (41 bp):
AAGCTTTCATATTAAAAAAATATAATAATATGATTGTCATC
Found at i:29270803 original size:20 final size:21
Alignment explanation
Indices: 29270753--29270804 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
29270743 ATTTTGAAAT
29270753 AAATAATATATAAGTCAATTTA
1 AAATAATATATAAG-CAATTTA
29270775 AAATAATATATAA-CAAGTTTA
1 AAATAATATATAAGCAA-TTTA
29270796 AAAT-ATATA
1 AAATAATATA
29270805 ATATGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.28
21 8 0.28
22 13 0.45
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (21 bp):
AAATAATATATAAGCAATTTA
Found at i:29276726 original size:4 final size:4
Alignment explanation
Indices: 29276719--29276744 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
29276709 TATGTATTTA
29276719 TTGT TTGT TTGT TTGT TTGT TTGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TT
29276745 ATTATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTGT
Found at i:29279367 original size:27 final size:27
Alignment explanation
Indices: 29279304--29279373 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
29279294 TTCTATAGTA
29279304 GTTTTTGAAAAAATAAATTAGAGAAGAC
1 GTTTTTG-AAAAATAAATTAGAGAAGAC
* * * * *
29279332 GTATCTGAAAAATAATTTTGAGAAGAT
1 GTTTTTGAAAAATAAATTAGAGAAGAC
29279359 GTTTTTGAACAAATA
1 GTTTTTGAA-AAATA
29279374 GTGTCAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 24 0.71
28 10 0.29
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (27 bp):
GTTTTTGAAAAATAAATTAGAGAAGAC
Found at i:29279653 original size:15 final size:15
Alignment explanation
Indices: 29279635--29279665 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29279625 ATAACTAAAG
*
29279635 AAAAAATATATAGAT
1 AAAAAATAGATAGAT
29279650 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
29279665 A
1 A
29279666 GATGAGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.23
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:29280543 original size:126 final size:126
Alignment explanation
Indices: 29280127--29280601 Score: 625
Period size: 125 Copynumber: 3.8 Consensus size: 126
29280117 TGGTTTGGCC
* * * * *
29280127 TCTGAACAAATAGTGTAAAAAACGCTTCAAGTAGGATACACTGTTAGCAAAAGCACTGAAAAAAA
1 TCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTG-AAAAAA
* ** * * * **
29280192 ACTCCCATATGGATGCACTTTTTCTATAGTAGTTTTTGAAAAAATAATTTTGAGAAGACATT
65 GCTCCCACGTGGATGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTT
* * *
29280254 TCTGAATAAATAGTGTCAAAAACGCTTCAAGCAGGATGTACTGTCAACAAAAGTACTGAAAAAAG
1 TCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAG
* * * * *
29280319 CTCCCACGCGGACT-TTTTTTTTCAATAGTAGTTTCTG-AAAAATAATTTTGAGAAGATGTT
66 CTCCCACGTGGA-TGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTT
*
29280379 TTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAG
1 TCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAG
*
29280444 CTCCCACGTGGATGCTCTTTTTCTACAGTTGTTTCTGAAAAAATAATTTTGAGAAGATGTT
66 CTCCCACGTGGATGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTT
* * * *
29280505 TCTAAACAACTAGTGTCAAAAACACTTCAAGCCA-GATGCACTGTTAGCAAAAGTACT-AAAAAA
1 TCTGAACAAATAGTGTCAAAAACGCTTCAAG-CAGGATGCACTGTCAGCAAAAGTACTGAAAAAA
* * *
29280568 GCTCTCATGTGGACGCTCTTTTTCTACAGTAGTT
65 GCTCCCACGTGGATGCTCTTTTTCTACAGTAGTT
29280602 CCTATTTGGC
Statistics
Matches: 306, Mismatches: 38, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
124 1 0.00
125 147 0.48
126 105 0.34
127 53 0.17
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
TCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAG
CTCCCACGTGGATGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTT
Found at i:29283732 original size:54 final size:54
Alignment explanation
Indices: 29283616--29283736 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 54
29283606 GCATTATTTA
* * * *
29283616 TATTTTATTAAAAATATAAAAATATTCAAAATATTTCTTTATTTAAAAGAACTTT
1 TATTTTATTAAAAATATAAAAAAATT-AAAATATTACTTTATTCAAAACAACTTT
*
29283671 TATTTTATTAAAAATATAAAAGTAAATT-ATA-ATTACTTTATTCAAAACAACTTT
1 TATTTTATTAAAAATATAAAA--AAATTAAAATATTACTTTATTCAAAACAACTTT
29283725 TATTTTATTAAA
1 TATTTTATTAAA
29283737 TGAAACAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
54 32 0.54
55 23 0.39
57 4 0.07
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (54 bp):
TATTTTATTAAAAATATAAAAAAATTAAAATATTACTTTATTCAAAACAACTTT
Found at i:29284186 original size:18 final size:18
Alignment explanation
Indices: 29284160--29284202 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
29284150 GACTGGAAAA
* * *
29284160 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
29284178 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
29284196 AGGATAC
1 AGGATAC
29284203 GCACCTAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:29284352 original size:30 final size:30
Alignment explanation
Indices: 29284256--29284345 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
29284246 GTTGAAGTGT
*
29284256 TGGGCCCGGTAACTGTGTGGGCGCTGTTGA
1 TGGGCCCGGTAATTGTGTGGGCGCTGTTGA
* * * * *
29284286 TGGGCCTGGTGATTGTATGGACCCT-TTGA
1 TGGGCCCGGTAATTGTGTGGGCGCTGTTGA
*
29284315 TGGGCCCGGTAATTGTGTGGGTGCTGTTGA
1 TGGGCCCGGTAATTGTGTGGGCGCTGTTGA
29284345 T
1 T
29284346 AAGCCCGCGT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 23 0.49
30 24 0.51
ACGTcount: A:0.11, C:0.17, G:0.40, T:0.32
Consensus pattern (30 bp):
TGGGCCCGGTAATTGTGTGGGCGCTGTTGA
Found at i:29290744 original size:3 final size:3
Alignment explanation
Indices: 29290736--29290786 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
29290726 CTACAATCTC
29290736 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
29290784 ATA
1 ATA
29290787 TAAAATCCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.