Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 118 of 444
Found at i:30157743 original size:21 final size:21
Alignment explanation
Indices: 30157717--30157769 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
30157707 CTTACCTTAT
30157717 GTTGATTCACTTGAATTATGA
1 GTTGATTCACTTGAATTATGA
*
30157738 GTTGATTCACGTGAATTATGA
1 GTTGATTCACTTGAATTATGA
30157759 GTTGATTCACT
1 GTTGATTCACT
30157770 AACATGTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (21 bp):
GTTGATTCACTTGAATTATGA
Found at i:30169435 original size:29 final size:29
Alignment explanation
Indices: 30169374--30169463 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
30169364 CACATACCTG
* *
30169374 TATATGGTCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
30169402 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
30169431 TATATGGCCCATCAGACCCAATTCATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
30169460 TATA
1 TATA
30169464 GTCATGATCA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 17 0.31
29 38 0.69
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:30169733 original size:16 final size:16
Alignment explanation
Indices: 30169676--30169734 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
30169666 ATAGTCAAAC
* *
30169676 TTTCGGCTTTTCGGTA
1 TTTCGGCTTTTCAGCA
*
30169692 TTTCAGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
*
30169708 TTTCGACTTTTCAGCA
1 TTTCGGCTTTTCAGCA
*
30169724 TTTTGGCTTTT
1 TTTCGGCTTTT
30169735 GCCGATCTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.12, C:0.20, G:0.17, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:30194473 original size:29 final size:29
Alignment explanation
Indices: 30194434--30194521 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
30194424 CAAAGATAAC
*
30194434 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
30194463 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
30194492 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
30194522 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:30194492 original size:15 final size:15
Alignment explanation
Indices: 30194434--30194512 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
30194424 CAAAGATAAC
*
30194434 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
30194448 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
30194463 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
30194477 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
30194492 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
30194507 AAGAAA
1 AAGAAA
30194513 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:30194521 original size:15 final size:15
Alignment explanation
Indices: 30194445--30194521 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
30194435 AGAAAACCGA
30194445 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
30194460 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
30194474 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
30194488 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
30194504 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
30194519 ATA
1 ATA
30194522 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:30197582 original size:93 final size:93
Alignment explanation
Indices: 30197470--30197640 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
30197460 GCCCATAAGT
* *
30197470 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30197535 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
30197563 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30197628 CGAGTTCGGATGC
66 CGAGTTCGGATGC
30197641 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:30197656 original size:46 final size:46
Alignment explanation
Indices: 30197462--30197642 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
30197452 TGTAACCCGC
* * *
30197462 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
30197508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
* ***
30197554 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
30197601 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
30197643 AACCATCCTA
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
46 77 0.68
47 37 0.32
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:30203459 original size:25 final size:25
Alignment explanation
Indices: 30203431--30203502 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 25
30203421 GAGTTATGAT
*
30203431 CAGTAAGCTCCTCCTGAGCTGATAA
1 CAGTAAGCTCCTACTGAGCTGATAA
*
30203456 CAGTAAGCT-CTAATGAGCTGGA-AA
1 CAGTAAGCTCCTACTGAGCT-GATAA
*
30203480 CAGTAAGCTCTTAC-GAGCTGATA
1 CAGTAAGCTCCTACTGAGCTGATA
30203503 TATCGGTAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 2 0.05
24 25 0.62
25 13 0.32
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
CAGTAAGCTCCTACTGAGCTGATAA
Found at i:30204642 original size:28 final size:28
Alignment explanation
Indices: 30204609--30204677 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
30204599 TGTGAATCTT
* * * * *
30204609 GCACTAAGTTTGTGAGTGTGATTATTGA
1 GCACTAAGTGTGCGAGTGTAAATATCGA
*
30204637 GCACTAAGTGTGCGAGTTTAAATATCGA
1 GCACTAAGTGTGCGAGTGTAAATATCGA
30204665 GCACTAAGTGTGC
1 GCACTAAGTGTGC
30204678 AAACTATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTGTAAATATCGA
Found at i:30211664 original size:64 final size:64
Alignment explanation
Indices: 30211583--30211766 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
30211573 AGACATTATG
* *
30211583 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACTATGTAGACAAGAGAGCTACGGGATAA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
30211647 ATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
30211712 AA
63 AA
* * * *
30211714 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
30211767 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:30217186 original size:29 final size:29
Alignment explanation
Indices: 30217144--30217212 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
30217134 ACAGAGATCA
30217144 CCACAAAGGC-TTTCCTCTCTAGA-GTTTG
1 CCACAAAGGCATTTCCTCTC-AGAGGTTTG
* * *
30217172 CCACAGAGGCATTTCGTTTCAGAGGTTTG
1 CCACAAAGGCATTTCCTCTCAGAGGTTTG
*
30217201 CCATAAAGGCAT
1 CCACAAAGGCAT
30217213 CCTTTTCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 12 0.35
29 22 0.65
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (29 bp):
CCACAAAGGCATTTCCTCTCAGAGGTTTG
Found at i:30217424 original size:60 final size:60
Alignment explanation
Indices: 30217285--30217429 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 60
30217275 TTTTAGTCAA
* * * * *
30217285 TACTTGCCACAAAGGCTTTCCTTCCAAGAGTTTTTCCACAAAGGTATCTTTTTCATTTAG
1 TACTTACCACTAAGGCTTTCCTTCCAAGAGATTTTCCACAAAGGCATCTTTTTCAATTAG
** * * * * * *
30217345 TACTCCCCA-TAAAGACTTTCCTT-TAAGAGATTTTCTATAAGGGCATCCTTTTTTAATTAG
1 TACTTACCACT-AAGGCTTTCCTTCCAAGAGATTTTCCACAAAGGCAT-CTTTTTCAATTAG
30217405 TACTTACCACTAAGGCTTTCCTTCC
1 TACTTACCACTAAGGCTTTCCTTCC
30217430 TAGATTTTTC
Statistics
Matches: 65, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
59 17 0.26
60 47 0.72
61 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.39
Consensus pattern (60 bp):
TACTTACCACTAAGGCTTTCCTTCCAAGAGATTTTCCACAAAGGCATCTTTTTCAATTAG
Found at i:30221408 original size:44 final size:42
Alignment explanation
Indices: 30221255--30221498 Score: 163
Period size: 44 Copynumber: 5.7 Consensus size: 42
30221245 AGCTCATACA
* * * * *
30221255 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATC-AAATATTG
1 ATGCCAACGTCCCAGACATAGTCTTACACG-AATCTCAA-ATCG
* ** * *
30221298 ATGCC-ACTGTCCTAGACAGGGTCTTACATGAA-ATCAAATACG
1 ATGCCAAC-GTCCCAGACATAGTCTTACACGAATCTCAAAT-CG
* * *
30221340 ATGCCGATGTCCCAGACATAGTCTTACACGTGAATCTCAAATCA
1 ATGCCAACGTCCCAGACATAGTCTTACAC--GAATCTCAAATCG
* * **
30221384 ATGCCAACGTCCCAAACATTGTCTTACAC-AAAATCAAATACG
1 ATGCCAACGTCCCAGACATAGTCTTACACGAATCTCAAAT-CG
** * *
30221426 ATGCCATTGTCCCAGGCATGGTCTTACACGAAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATAGTCTTACACG--AATCTCAAATCG
* * *
30221470 ATGCCAACGTCCTAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATAGTCTTACAC
30221499 AAAATCATAT
Statistics
Matches: 158, Mismatches: 32, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
41 10 0.06
42 54 0.34
43 25 0.16
44 55 0.35
45 14 0.09
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATAGTCTTACACGAATCTCAAATCG
Found at i:30221421 original size:86 final size:86
Alignment explanation
Indices: 30221317--30221505 Score: 263
Period size: 86 Copynumber: 2.2 Consensus size: 86
30221307 TCCTAGACAG
** **
30221317 GGTCTTACATGAAATCAAATACGATGCCGA-TGTCCCAGACATAGTCTTACACGTGAATCTCAAA
1 GGTCTTACACAAAATCAAATACGATGCC-ATTGTCCCAGACATAGTCTTACACGAAAATCTCAAA
30221381 TCAATGCCAACGTCCCAAACAT
65 TCAATGCCAACGTCCCAAACAT
* * *
30221403 TGTCTTACACAAAATCAAATACGATGCCATTGTCCCAGGCATGGTCTTACACGAAAATCTCAAAT
1 GGTCTTACACAAAATCAAATACGATGCCATTGTCCCAGACATAGTCTTACACGAAAATCTCAAAT
* * * *
30221468 CGATGCCAACGTCCTAGACGT
66 CAATGCCAACGTCCCAAACAT
30221489 GGTCTTACACAAAATCA
1 GGTCTTACACAAAATCA
30221506 TATATCGAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 89 0.99
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (86 bp):
GGTCTTACACAAAATCAAATACGATGCCATTGTCCCAGACATAGTCTTACACGAAAATCTCAAAT
CAATGCCAACGTCCCAAACAT
Found at i:30223834 original size:43 final size:41
Alignment explanation
Indices: 30223771--30223924 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 41
30223761 TACCACACTA
* * *
30223771 ATGCCAAATCCCAGATATGGTCTTACATGTAATCTCATATTG
1 ATGCCATATCCTAGATATGGTCTTACAAG-AATCTCATATTG
* * * * * * *
30223813 CTGCCAATAGCCTAGCTATGGTGTTACACGAAATGTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACAAG-AATCTCATATTG
* * * *
30223856 ATGTCATATCCCAAATATGGTCTTACACAGAATCTCATAATG
1 ATGCCATATCCTAGATATGGTCTTACA-AGAATCTCATATTG
30223898 ATGCCATATCCTAGATATGGTCTTACA
1 ATGCCATATCCTAGATATGGTCTTACA
30223925 CATAGCCTCG
Statistics
Matches: 86, Mismatches: 24, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
42 54 0.63
43 32 0.37
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCTAGATATGGTCTTACAAGAATCTCATATTG
Found at i:30229390 original size:28 final size:29
Alignment explanation
Indices: 30229326--30229395 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
30229316 TTTAAAACCC
*
30229326 TAGGGGT-ATATCGGTAATTTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTTACTCTT
*
30229354 TAGGGGTAATTTCGGTAA-TTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTTACTCTT
30229382 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
30229396 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 30 0.77
29 9 0.23
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.44
Consensus pattern (29 bp):
TAGGGGTAATTTCGGTAATTTTTACTCTT
Found at i:30230046 original size:27 final size:27
Alignment explanation
Indices: 30230016--30230077 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
30230006 GGGCAAAATG
30230016 GTAATTTTACCCCACAAGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTTA
* *
30230043 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTTA
30230070 GTAATTTT
1 GTAATTTT
30230078 TCAAACCATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTTA
Found at i:30230074 original size:54 final size:55
Alignment explanation
Indices: 30230016--30230158 Score: 134
Period size: 54 Copynumber: 2.7 Consensus size: 55
30230006 GGGCAAAATG
** **
30230016 GTAATTTTACCCCA-CAAGGGTATTTTAGTAATTTTACCCTAC-AGGGGTATTTTA
1 GTAATTTTACCAAACCAAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTTTA
* * * *
30230070 GTAATTTT-TCAAACCATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACCAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
***
30230124 GTAATTTTA-CAAATTGAGGGTATTTCT-GTAATTTT
1 GTAATTTTACCAAACCAAGGGTATTT-TAGTAATTTT
30230159 GTAAATCGAG
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
53 5 0.07
54 67 0.92
55 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (55 bp):
GTAATTTTACCAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
Found at i:30230090 original size:27 final size:27
Alignment explanation
Indices: 30230033--30230136 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
30230023 TACCCCACAA
**
30230033 GGGTATTTTAGTAATTTTACCCTA-CAG
1 GGGTATTTTAGTAATTTTA-CAAACCAG
* *
30230060 GGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTTAGTAATTTTACAAACCAG
* *
30230087 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACCAG
*
30230114 GGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTAGTAATTTTACAAA
30230137 TTGAGGGTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.03
27 66 0.97
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACCAG
Found at i:30230144 original size:27 final size:28
Alignment explanation
Indices: 30230033--30230170 Score: 117
Period size: 27 Copynumber: 5.1 Consensus size: 28
30230023 TACCCCACAA
* **
30230033 GGGTATTTTAGTAATTTTAC-CCTAC-AG
1 GGGTATTTTGGTAATTTTACAAAT-CGAG
* * * *
30230060 GGGTATTTTAGTAATTTTTCAAA-CCAT
1 GGGTATTTTGGTAATTTTACAAATCGAG
*
30230087 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATCGAG
*
30230114 GGGTATTTTGGTAATTTTACAAATTGA-
1 GGGTATTTTGGTAATTTTACAAATCGAG
**
30230141 GGGTATTTCT-GTAATTTTGTAAATCGAG
1 GGGTATTT-TGGTAATTTTACAAATCGAG
30230169 GG
1 GG
30230171 TAATATAGTA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 88 0.95
28 4 0.04
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.42
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTACAAATCGAG
Found at i:30230171 original size:27 final size:27
Alignment explanation
Indices: 30230124--30230415 Score: 214
Period size: 27 Copynumber: 10.8 Consensus size: 27
30230114 GGGTATTTTG
** * ** *
30230124 GTAATTTTACAAATTGAGGGTATTTCT
1 GTAATTTTGTAAATCGAGGGTAAATCA
30230151 GTAATTTTGTAAATCGAGGGTAATAT-A
1 GTAATTTTGTAAATCGAGGGTAA-ATCA
* ** **
30230178 GTAATTCTGTAAATTAAGAGAAAAAT-A
1 GTAATTTTGTAAATCGAG-GGTAAATCA
* * * *
30230205 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAATCA
*
30230231 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAATCA
* * * *
30230259 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCA
* *
30230286 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAATCA
* * *
30230313 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCA
* * * *
30230340 GTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAATCA
* * *
30230367 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAATCA
* *
30230393 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
30230416 CTTTGGTAAT
Statistics
Matches: 220, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.03
27 209 0.95
28 5 0.02
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAATCA
Found at i:30230426 original size:27 final size:27
Alignment explanation
Indices: 30230205--30230415 Score: 215
Period size: 27 Copynumber: 7.8 Consensus size: 27
30230195 GAGAAAAATA
* * **
30230205 GTAATTCTATAAATCGACGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACG
* * * *
30230232 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGGGGGTAAAACG
* **
30230259 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACG
* * * *
30230286 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGGGGGTAAAACG
* *
30230313 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACG
* * * *
30230340 GTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACG
30230367 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACG
* *
30230394 ATAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGGGGGTA
30230416 CTTTGGTAAT
Statistics
Matches: 159, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTATGTAAATCGGGGGTAAAACG
Found at i:30230426 original size:54 final size:54
Alignment explanation
Indices: 30230151--30230415 Score: 309
Period size: 54 Copynumber: 4.9 Consensus size: 54
30230141 GGGTATTTCT
* * * ** * * *
30230151 GTAATTTTGTAAATCGAGGGTAATATA-G-TAATTCTGTAAATTAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAA-A-ACGATAATTTTATAAATCGAGGGTAAAACA
* * *
30230205 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
* *
30230259 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
* * *
30230313 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
* * * * *
30230367 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTA
30230416 CTTTGGTAAT
Statistics
Matches: 185, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
52 1 0.01
53 2 0.01
54 182 0.98
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACA
Found at i:30230429 original size:81 final size:81
Alignment explanation
Indices: 30230152--30230415 Score: 305
Period size: 81 Copynumber: 3.3 Consensus size: 81
30230142 GGTATTTCTG
* * ** * * * * * ** *
30230152 TAATTTTGTAAATCGAGGGTAATATAGTAATTCTGTAAATTAAGAGAAAAATAGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGGTAATTATATAA
*
30230217 ATCGACGGTAAAACGA
66 ATCGAGGGTAAAACGA
* * * * *
30230233 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGGTAATTATATAA
30230298 ATCGAGGGTAAAAC-A
66 ATCGAGGGTAAAACGA
** *
30230313 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAACGGTAATTATGTA
1 -TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGGTAATTATATA
*
30230378 AATCGGGGGTAAAACGA
65 AATCGAGGGTAAAACGA
*
30230395 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
30230416 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 160 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGGTAATTATATAA
ATCGAGGGTAAAACGA
Found at i:30230442 original size:27 final size:26
Alignment explanation
Indices: 30230412--30230510 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
30230402 GTAAATCGGG
* *
30230412 GGTACTTTGGTAATTTTACAAGTCAAA
1 GGTA-TTTAGTAATTTTACAAATCAAA
* *
30230439 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTT-AGTAATTTTACAAATCAAA
* *
30230466 GGTATTTTAGTATTTTTACAAA-CTAAG
1 GGTA-TTTAGTAATTTTACAAATC-AAA
*
30230493 GGTATTTCGGTAATTTTA
1 GGTATTT-AGTAATTTTA
30230511 GTAAACTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 7 0.12
27 50 0.83
28 3 0.05
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
GGTATTTAGTAATTTTACAAATCAAA
Found at i:30230497 original size:54 final size:54
Alignment explanation
Indices: 30230404--30230510 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
30230394 ATAATTCTGT
* * *
30230404 AAATCGGGGGTACTTTGGTAATTTTACAAGTCAAAGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTACTTTAGTAATTTTACAACTCAAAGGTATTTCAGTAATTTTAC
* * * *
30230458 AAATCGAGGGTATTTTAGTATTTTTACAAACT-AAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTACTTTAGTAATTTTAC-AACTCAAAGGTATTTCAGTAATTTTA
30230511 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTACTTTAGTAATTTTACAACTCAAAGGTATTTCAGTAATTTTAC
Found at i:30232848 original size:42 final size:42
Alignment explanation
Indices: 30232783--30232880 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
30232773 ATAGCCCAAC
* * *
30232783 TATGGTCTTACATAAAATGTCAT-ATCGATGCCATATCCTAGA
1 TATGGTCTTACACAAAATCTCATAAT-GATGCCATATCCCAGA
* *
30232825 TATGGTCTTACGCAATATCTCATAATGATGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATGATGCCATATCCCAGA
30232867 TATGGTCTTACACA
1 TATGGTCTTACACA
30232881 TAGCCTCTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 47 0.96
43 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATAATGATGCCATATCCCAGA
Found at i:30236407 original size:15 final size:15
Alignment explanation
Indices: 30236383--30236412 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
30236373 CTAATGTATT
30236383 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
30236398 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
30236413 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:30239550 original size:22 final size:22
Alignment explanation
Indices: 30239525--30239567 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
30239515 TCTTCCTATT
30239525 TTGCAACCATTTTATTATTATG
1 TTGCAACCATTTTATTATTATG
* * *
30239547 TTGCTACTATTTTGTTATTAT
1 TTGCAACCATTTTATTATTAT
30239568 TGTTTGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (22 bp):
TTGCAACCATTTTATTATTATG
Found at i:30239939 original size:30 final size:30
Alignment explanation
Indices: 30239903--30239965 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
30239893 ACTTAACAAG
30239903 CAAATGCCTTTAAAACAATAACAAAATTAA
1 CAAATGCCTTTAAAACAATAACAAAATTAA
*
30239933 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAACAATAACAAAATTAA
30239963 CAA
1 CAA
30239966 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTTAAAACAATAACAAAATTAA
Found at i:30240461 original size:11 final size:11
Alignment explanation
Indices: 30240445--30240475 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
30240435 TATATATATT
30240445 TAAAAATTATA
1 TAAAAATTATA
*
30240456 TAAAAATAATA
1 TAAAAATTATA
30240467 TAAAAATTA
1 TAAAAATTA
30240476 ATACGGGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:30245049 original size:20 final size:19
Alignment explanation
Indices: 30245024--30245061 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
30245014 AAAAAACATA
*
30245024 AAAAAGTATTGGTACATTTC
1 AAAAAGTATCGGTA-ATTTC
30245044 AAAAAGTATCGGTAATTT
1 AAAAAGTATCGGTAATTT
30245062 TGTCTCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (19 bp):
AAAAAGTATCGGTAATTTC
Found at i:30247434 original size:8 final size:8
Alignment explanation
Indices: 30247421--30247450 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
30247411 CTAGATCGGC
30247421 AAAAGCCG
1 AAAAGCCG
30247429 AAAAGCCG
1 AAAAGCCG
*
30247437 AAATGCCG
1 AAAAGCCG
30247445 AAAAGC
1 AAAAGC
30247451 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:30247736 original size:28 final size:27
Alignment explanation
Indices: 30247696--30247759 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
30247686 ATGTACTAGA
*
30247696 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACC-TT
30247724 ATACCCCTATGTATGCAAAATGACCTT
1 ATACCCCTATGTATGCAAAATGACCTT
30247751 ATACCCCTA
1 ATACCCCTA
30247760 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACCTT
Found at i:30247965 original size:29 final size:28
Alignment explanation
Indices: 30247865--30247954 Score: 130
Period size: 27 Copynumber: 3.2 Consensus size: 28
30247855 AGGAAGCGTC
30247865 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
30247893 CTGGTGGCCCTGCCACAAATTAT-TGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
30247920 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
30247949 CTGGTG
1 CTGGTG
30247955 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 25 0.45
28 24 0.43
29 7 0.12
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:30249063 original size:11 final size:10
Alignment explanation
Indices: 30249035--30249068 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
30249025 AGCCTGTAAG
30249035 TATTCTGAAT
1 TATTCTGAAT
*
30249045 TTTTCTGAAT
1 TATTCTGAAT
30249055 ATATTCTGAAT
1 -TATTCTGAAT
30249066 TAT
1 TAT
30249069 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:30255576 original size:28 final size:28
Alignment explanation
Indices: 30255540--30255600 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
30255530 TACTAGAATA
*
30255540 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
*
30255568 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
30255596 CCCTA
1 CCCTA
30255601 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCTATGTATGCAAAATGACCATTATAC
Found at i:30255747 original size:28 final size:28
Alignment explanation
Indices: 30255706--30255795 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
30255696 AGGAAGCGTC
30255706 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
30255734 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
30255762 CT-GTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
30255790 CTGGTG
1 CTGGTG
30255796 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 22 0.39
28 31 0.55
29 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:30256281 original size:18 final size:18
Alignment explanation
Indices: 30256242--30256282 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
30256232 TAATAAGGCC
* *
30256242 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
30256260 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
30256278 TTTTA
1 TTTTA
30256283 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:30263536 original size:46 final size:44
Alignment explanation
Indices: 30263469--30263633 Score: 120
Period size: 46 Copynumber: 3.5 Consensus size: 44
30263459 GCTAGTATAG
*
30263469 GACATGTCTGGAACATACATCGGCCACATTATGAGAGCCAGTGTAA
1 GACATGTCTGG-ACATGCATCGGCC-CATTATGAGAGCCAGTGTAA
* *
30263515 GACATGTCTGAGACATGCATCGG--CATTGAGACGAGAGCCAGTGTGA
1 GACATGTCTG-GACATGCATCGGCCCATT---ATGAGAGCCAGTGTAA
* * * *
30263561 GACATGTGTGGGACATGCATTGGCCTCGAGATATGCA-AGCTAGTGTAA
1 GACATGTCT-GGACATGCATCGGCC-C-A-TTATG-AGAGCCAGTGTAA
*
30263609 GACCTGTCTTGGACATGGCATCGGC
1 GACATGTC-TGGACAT-GCATCGGC
30263634 TTGACATGTG
Statistics
Matches: 94, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
43 4 0.04
46 53 0.56
47 2 0.02
48 23 0.24
49 10 0.11
50 1 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (44 bp):
GACATGTCTGGACATGCATCGGCCCATTATGAGAGCCAGTGTAA
Found at i:30263713 original size:49 final size:48
Alignment explanation
Indices: 30263651--30263824 Score: 133
Period size: 49 Copynumber: 3.6 Consensus size: 48
30263641 GTGTTAGTTC
*
30263651 AAGACCTGTCTGGGACATGGCATCGACACCGATAGATAAGAGCCAGTGT
1 AAGACTTGTCTGGGACATGGCATCGACACC-ATAGATAAGAGCCAGTGT
* * * ** *
30263700 AAGACTTGTCTGGGACGTGGCATCGGC-CCTAATATATGAA-AGAAAATGT
1 AAGACTTGTCTGGGACATGGCATCGACACC--ATAGAT-AAGAGCCAGTGT
* * *
30263749 AAGACTTGTCTGCGACATGGCATC-A-A-CTTAGATATGTGAGCCAGTGT
1 AAGACTTGTCTGGGACATGGCATCGACACCATAGATA--AGAGCCAGTGT
* * *
30263796 AAGACCATGTTTGGAACATGGCATCGACA
1 AAGA-CTTGTCTGGGACATGGCATCGACA
30263825 TTGTACGCTA
Statistics
Matches: 95, Mismatches: 21, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
47 11 0.12
48 18 0.19
49 58 0.61
50 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (48 bp):
AAGACTTGTCTGGGACATGGCATCGACACCATAGATAAGAGCCAGTGT
Found at i:30266552 original size:43 final size:41
Alignment explanation
Indices: 30266480--30266571 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 41
30266470 TGTGTCCTCT
* * * *
30266480 TGTAAGACTATGTCTGGGACGTTGGCATCGATATGTGATTACG
1 TGTAAGACTATGTCTGGGACATCGACATCG-TATGTCATT-CG
*
30266523 TGTAAGA-TCATGTCTGGGACATCGACATCGTATTTCATTCG
1 TGTAAGACT-ATGTCTGGGACATCGACATCGTATGTCATTCG
30266564 TGTAAGAC
1 TGTAAGAC
30266572 CTTGTCTAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
41 9 0.21
42 8 0.19
43 25 0.60
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
TGTAAGACTATGTCTGGGACATCGACATCGTATGTCATTCG
Found at i:30274725 original size:41 final size:43
Alignment explanation
Indices: 30274626--30274728 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
30274616 ATGTGTTCTT
* * * *
30274626 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTAC
* *
30274669 GTGTAACACCATGTCTGGGACATCGGCATCG-TATTTGATT-C
1 GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTAC
*
30274710 GTGTAAGACCTTGTCTGGG
1 GTGTAAGACCATGTCTGGG
30274729 GCAGTGGCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 18 0.35
42 8 0.15
43 26 0.50
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTAC
Found at i:30274738 original size:41 final size:42
Alignment explanation
Indices: 30274626--30274738 Score: 113
Period size: 41 Copynumber: 2.7 Consensus size: 42
30274616 ATGTGTTCTT
* * * *
30274626 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTAC
1 GTGTAACACCATGTCTGGGAC-ATGGCATCGATATGTGATTAC
*
30274669 GTGTAACACCATGTCTGGGACATCGGCATCG-TATTTGATT-C
1 GTGTAACACCATGTCTGGGACAT-GGCATCGATATGTGATTAC
* * *
30274710 GTGTAAGACCTTGTCTGGGGCAGTGGCAT
1 GTGTAACACCATGTCTGGGACA-TGGCAT
30274739 TGATTTATCG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
41 25 0.42
42 10 0.17
43 25 0.42
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
GTGTAACACCATGTCTGGGACATGGCATCGATATGTGATTAC
Found at i:30277945 original size:13 final size:13
Alignment explanation
Indices: 30277927--30277990 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
30277917 AGTTTGGCAA
30277927 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
30277940 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
30277953 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
30277966 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
30277979 TGCTTTTGAAAA
1 TGCTTTTGAAAA
30277991 ATTTGGTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:30277956 original size:26 final size:26
Alignment explanation
Indices: 30277927--30277990 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
30277917 AGTTTGGCAA
30277927 TGCTTTTGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
* *
30277953 TGCTGTGGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
30277979 TGCTTTTGAAAA
1 TGCTTTTGAAAA
30277991 ATTTGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAGAAG
Found at i:30282929 original size:17 final size:17
Alignment explanation
Indices: 30282896--30282929 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
30282886 GTATATAAAA
*
30282896 CAAAAGAAATTATTTTT
1 CAAAAAAAATTATTTTT
30282913 CAAAAAAAAGTTATTTT
1 CAAAAAAAA-TTATTTT
30282930 GGAAAATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAAAAAATTATTTTT
Found at i:30285213 original size:26 final size:26
Alignment explanation
Indices: 30285184--30285292 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
30285174 TGGTACAAAT
*
30285184 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
30285210 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30285236 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30285262 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30285288 TGATA
1 TGATA
30285293 GGCATTTCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:30292271 original size:26 final size:26
Alignment explanation
Indices: 30292240--30292321 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
30292230 TGGTACAAAT
30292240 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
30292266 TTATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30292292 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
30292318 TGAT
1 TGAT
30292322 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:30298342 original size:15 final size:15
Alignment explanation
Indices: 30298324--30298356 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
30298314 TTATTTTTCA
30298324 TTTATTTACTT-TTAT
1 TTTATTT-CTTATTAT
30298339 TTTATTTCTTATTAT
1 TTTATTTCTTATTAT
30298354 TTT
1 TTT
30298357 TATTATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATTTCTTATTAT
Found at i:30305854 original size:22 final size:21
Alignment explanation
Indices: 30305824--30305864 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
30305814 GTGACAGCCA
*
30305824 CTTTGATTTGGGTTTAATCTTT
1 CTTTGATTT-GATTTAATCTTT
*
30305846 CTTTTATTTGATTTAATCT
1 CTTTGATTTGATTTAATCT
30305865 GAAAATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (21 bp):
CTTTGATTTGATTTAATCTTT
Found at i:30310329 original size:42 final size:42
Alignment explanation
Indices: 30310270--30310356 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
30310260 CAATGCCGGA
** * *
30310270 ATAGGGTTAAGGAGCATTACTGGACTTACAACATAATTATAC
1 ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
*
30310312 ATAGGGTTAGGGAGCATTACCAGACATACAACACAATTATAC
1 ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
30310354 ATA
1 ATA
30310357 CTTTTAGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (42 bp):
ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
Found at i:30311672 original size:27 final size:27
Alignment explanation
Indices: 30311634--30311745 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
30311624 AGCATGGCTG
* *
30311634 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
30311660 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
30311688 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
30311715 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
30311742 CCAG
1 CCAG
30311746 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:30311727 original size:54 final size:54
Alignment explanation
Indices: 30311634--30311745 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
30311624 AGCATGGCTG
* * *
30311634 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
30311688 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
30311742 CCAG
1 CCAG
30311746 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:30314810 original size:57 final size:56
Alignment explanation
Indices: 30314691--30314837 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 56
30314681 TACATACATG
* * *
30314691 CATATGGCCC-TCTAGGCCCAATCTCATTTAGATGCCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCTAGGCCCAATCACA-TTATATGCCCCATCAGGCCCAATTCAC-TT
* *
30314748 CATATGGCCCATC-AGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCTAGGCCCAA-TCACATT-ATATGCCCCATCAGGCCCAAT-TCACTT
* *
30314805 TATATGACCCATCTA-GCCCAAATCACATTATAT
1 CATATGGCCCATCTAGGCCC-AATCACATTATAT
30314838 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 13
0.79 0.07 0.13
Matches are distributed among these distances:
56 4 0.05
57 44 0.57
58 26 0.34
59 3 0.04
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (56 bp):
CATATGGCCCATCTAGGCCCAATCACATTATATGCCCCATCAGGCCCAATTCACTT
Found at i:30314835 original size:28 final size:30
Alignment explanation
Indices: 30314686--30314837 Score: 140
Period size: 29 Copynumber: 5.3 Consensus size: 30
30314676 ACGCCTACAT
*
30314686 ACATGCATATGGCCC-TCTAGGCCC-AATC
1 ACATTCATATGGCCCATCTAGGCCCAAATC
* * * * * *
30314714 TCATTTAGATGCCCCATC-CGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAAATC
* *
30314743 ACGTTCATATGGCCCATC-AGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAAATC
30314772 ACATTCATATGGCCCAT-TAGGCCC-AATC
1 ACATTCATATGGCCCATCTAGGCCCAAATC
* * *
30314800 TCATTTATATGACCCATCTA-GCCCAAATC
1 ACATTCATATGGCCCATCTAGGCCCAAATC
30314829 ACATT-ATAT
1 ACATTCATAT
30314838 TCATGCTCAC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
28 40 0.40
29 60 0.60
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAAATC
Found at i:30315062 original size:8 final size:8
Alignment explanation
Indices: 30315049--30315087 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
30315039 GTGGCCAAAC
*
30315049 TTTCGGCT
1 TTTCGGCA
30315057 TTTCGGCA
1 TTTCGGCA
*
30315065 TTTCGGCT
1 TTTCGGCA
*
30315073 TTTTGGCA
1 TTTCGGCA
30315081 TTTCGGC
1 TTTCGGC
30315088 CTTTGCCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.05, C:0.23, G:0.26, T:0.46
Consensus pattern (8 bp):
TTTCGGCA
Found at i:30315070 original size:16 final size:16
Alignment explanation
Indices: 30315049--30315087 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
30315039 GTGGCCAAAC
30315049 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
30315065 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
30315081 TTTCGGC
1 TTTCGGC
30315088 CTTTGCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.23, G:0.26, T:0.46
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:30318097 original size:94 final size:95
Alignment explanation
Indices: 30317892--30318108 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 95
30317882 TATGTGTGCT
30317892 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA-GAGAGCTAGTGTAAGACATGTCTG
* * * *
30317955 GGACATGCATCGGCCACGCGATATATAAGAT
65 GGACATGCATCGGACACGCAATAGATAAGAC
* * * * * *
30317986 AGTGTAAGACC-TGTCTGGGACATGGCCTCAGC-TTGTG-GTGTGTTAGTGTAAGACCTGTCTGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAGAGAGCTAGTGTAAGACATGTCTGG
* *
30318048 GAGATGGCATC-GACAC-CAATAGATGAGAGCC
66 GACAT-GCATCGGACACGCAATAGAT-A-AGAC
30318079 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
30318109 GGCTTCTTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
91 6 0.06
92 30 0.29
93 18 0.17
94 42 0.40
95 8 0.08
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAGAGAGCTAGTGTAAGACATGTCTGG
GACATGCATCGGACACGCAATAGATAAGAC
Found at i:30319599 original size:14 final size:14
Alignment explanation
Indices: 30319580--30319623 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
30319570 GTTAACCAAA
30319580 TATTTATCAAAATC
1 TATTTATCAAAATC
* *
30319594 TATTTAACCAAA--
1 TATTTATCAAAATC
30319606 TATTTATCAAAATC
1 TATTTATCAAAATC
30319620 TATT
1 TATT
30319624 CCATTTCAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 10 0.42
14 14 0.58
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
TATTTATCAAAATC
Found at i:30319607 original size:26 final size:26
Alignment explanation
Indices: 30319571--30319623 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30319561 TTGACACAAG
30319571 TTAACCAAATATTTATCAAAATCTAT
1 TTAACCAAATATTTATCAAAATCTAT
30319597 TTAACCAAATATTTATCAAAATCTAT
1 TTAACCAAATATTTATCAAAATCTAT
30319623 T
1 T
30319624 CCATTTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (26 bp):
TTAACCAAATATTTATCAAAATCTAT
Found at i:30326178 original size:40 final size:40
Alignment explanation
Indices: 30326076--30326226 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
30326066 AAATTGAATG
* * * * * *
30326076 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
30326116 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
30326156 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
30326196 AAATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
30326227 AAATCGTGAT
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:30326241 original size:39 final size:39
Alignment explanation
Indices: 30326076--30326248 Score: 145
Period size: 40 Copynumber: 4.4 Consensus size: 39
30326066 AAATTGAATG
* * * *
30326076 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAA--ATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTAGT
* * * *
30326116 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAG-T
* *
30326156 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAG-T
* * *
30326196 AAATCCGGGCTAAGA-CCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGT
*
30326234 GATATCCGGGTTAAG
1 -ATATCCGGGCTAAG
30326249 TCCTGTAGGC
Statistics
Matches: 108, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 34 0.31
40 68 0.63
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGT
Found at i:30334266 original size:40 final size:40
Alignment explanation
Indices: 30334164--30334347 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
30334154 AAATTGAATG
* * * * * *
30334164 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
30334204 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
30334244 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
30334284 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
30334324 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
30334348 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 116 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:30339998 original size:40 final size:40
Alignment explanation
Indices: 30339953--30340120 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
30339943 CGGAATATAA
*
30339953 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
30339993 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
30340033 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
30340073 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
30340113 CCGGATAT
1 CCGGATAT
30340121 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:30340103 original size:80 final size:80
Alignment explanation
Indices: 30339969--30340120 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
30339959 ATAAGCATGT
* *
30339969 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
30340034 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
30340049 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
30340112 CCCGGATAT
64 CCCGGATAT
30340121 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:30344295 original size:34 final size:33
Alignment explanation
Indices: 30344240--30344311 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
30344230 GTATGCATTT
* *
30344240 CTGATACTGTACTGAATTGGGCTAAGGCCCAGA
1 CTGATACTGTACTGAATTGGGCTAAGACCCACA
30344273 CTGATACTGCTACTGTAA-TGGGCTAAGACCCACA
1 CTGATACTG-TACTG-AATTGGGCTAAGACCCACA
30344307 CTGAT
1 CTGAT
30344312 TTTACTACTG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
33 9 0.26
34 24 0.69
35 2 0.06
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (33 bp):
CTGATACTGTACTGAATTGGGCTAAGACCCACA
Found at i:30344320 original size:34 final size:34
Alignment explanation
Indices: 30344240--30344330 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
30344230 GTATGCATTT
* * *
30344240 CTGATACT-GTACTG-AATTGGGCTAAGGCCCAGA
1 CTGATACTACTACTGTAA-TGGGCTAAGACCCACA
*
30344273 CTGATACTGCTACTGTAATGGGCTAAGACCCACA
1 CTGATACTACTACTGTAATGGGCTAAGACCCACA
**
30344307 CTGATTTTACTACTGTTAA-GGGCT
1 CTGATACTACTACTG-TAATGGGCT
30344331 TAGGTCGAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
33 8 0.16
34 36 0.73
35 5 0.10
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (34 bp):
CTGATACTACTACTGTAATGGGCTAAGACCCACA
Found at i:30357835 original size:27 final size:27
Alignment explanation
Indices: 30357753--30357837 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
30357743 TTAATCAAAT
30357753 TTTCTTAGCATCTCTCAATTTCAAACA
1 TTTCTTAGCATCTCTCAATTTCAAACA
** * *
30357780 TTTCACA-CAAT-TACCATCTATTT--AGCA
1 TTTCTTAGC-ATCT--C-TCAATTTCAAACA
30357807 TTTCTTAGCATCTCTCAATTTCAAACA
1 TTTCTTAGCATCTCTCAATTTCAAACA
30357834 TTTC
1 TTTC
30357838 CCACAATTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
25 6 0.14
26 3 0.07
27 24 0.57
28 3 0.07
29 6 0.14
ACGTcount: A:0.29, C:0.26, G:0.04, T:0.41
Consensus pattern (27 bp):
TTTCTTAGCATCTCTCAATTTCAAACA
Found at i:30357835 original size:54 final size:54
Alignment explanation
Indices: 30357753--30357857 Score: 192
Period size: 54 Copynumber: 1.9 Consensus size: 54
30357743 TTAATCAAAT
*
30357753 TTTCTTAGCATCTCTCAATTTCAAACATTTCACACAATTACCATCTATTTAGCA
1 TTTCTTAGCATCTCTCAATTTCAAACATTTCACACAATTACCATATATTTAGCA
*
30357807 TTTCTTAGCATCTCTCAATTTCAAACATTTCCCACAATTACCATATATTTA
1 TTTCTTAGCATCTCTCAATTTCAAACATTTCACACAATTACCATATATTTA
30357858 ACAAACTTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (54 bp):
TTTCTTAGCATCTCTCAATTTCAAACATTTCACACAATTACCATATATTTAGCA
Found at i:30359484 original size:16 final size:17
Alignment explanation
Indices: 30359460--30359492 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
30359450 CACAGGCCTT
30359460 CATGAAACA-ATATGGC
1 CATGAAACAGATATGGC
*
30359476 CATGTAACAGATATGGC
1 CATGAAACAGATATGGC
30359493 ACTCGACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (17 bp):
CATGAAACAGATATGGC
Found at i:30366742 original size:44 final size:44
Alignment explanation
Indices: 30366676--30367479 Score: 583
Period size: 44 Copynumber: 18.1 Consensus size: 44
30366666 TATTATGGCG
* * * ** *
30366676 AATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * *
30366720 AACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * * * *
30366764 AGTTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TA
* * *
30366809 AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A-TA
* * * * * *
30366858 TAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-T-CA--TAGCA
1 -A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TA
* * *
30366901 AACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * * *
30366945 AGTCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TA
* * * * *
30366990 AATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
*
30367034 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
*
30367078 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * * *
30367122 GATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATCT-AAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGTTA-TA
* * * * * *
30367167 AATCTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
** * * ** * *
30367211 AGCCTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * * **
30367255 GATCTTATCTCCCTAAAGTTGCAGTGGAGTATATCGAAGATGGTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTATA
** * * * *
30367300 AATCTTATCTCTTTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
** * * * *
30367344 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
* * * * * * * **
30367388 AGTCTTATCTCCCTGAAATTACAATAGAGCAGACTGAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TA
* * * * *
30367433 AATCTTATTTCCCTAAAATTGCAGTGGAACAGATTGAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
30367477 AAT
1 AAT
30367480 TAGAGATCTT
Statistics
Matches: 591, Mismatches: 152, Indels: 34
0.76 0.20 0.04
Matches are distributed among these distances:
41 25 0.04
42 2 0.00
43 3 0.01
44 356 0.60
45 174 0.29
47 1 0.00
49 3 0.01
50 2 0.00
51 25 0.04
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA
Found at i:30366846 original size:89 final size:89
Alignment explanation
Indices: 30366678--30367477 Score: 675
Period size: 89 Copynumber: 9.0 Consensus size: 89
30366668 TTATGGCGAA
* * * * ** * * *
30366678 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCCA-CAAACCTTATCTCCCTAAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* *
30366742 AGTGGAGCAGGTTGAAGTTACAAG
66 AGTGGAGCAGATTGAAGTTATAAG
* * * * * *
30366766 TTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* *
30366831 AGTGGAACAAATTGAAGCTATAAATTATAG
66 AGTGGAGCAGATTGAAG-T-T--A-TA-AG
* * * * * *
30366861 ATCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-T---CATAGCAAACCTTATCTCCCTAAAGTTG
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTG
*
30366922 CAGTGGAGCAGGTTGAAGTTATAAG
65 CAGTGGAGCAGATTGAAGTTATAAG
* * * * * *
30366947 TCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* * *
30367012 AGTAGAGCAGATTAAAGCTATAAG
66 AGTGGAGCAGATTGAAGTTATAAG
* * * *
30367036 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TAGATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
30367100 AGTGGAGCAGATTGAAGTTAT-AG
66 AGTGGAGCAGATTGAAGTTATAAG
* * * *
30367123 ATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATCT-AAGATAGCAAATCTTAACTCTCTGAAGTT
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT-TGAAGATAGCAAATCTTATCTCCCTGAAGTT
* * * *
30367187 GCAGTAGAGCAAATTAAAGCTATAAG
64 GCAGTGGAGCAGATTGAAGTTATAAG
* * * ** * * * * *
30367213 CCTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTA-TAGATCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* * * ** *
30367277 AGTGGAGTATATCGAAGATGGTAAA
66 AGTGGAGCAGATTGAAG-TTATAAG
** * * * * **
30367302 TCTTATCTCTTTGAAGTTGCAGTAGAGCAAATTAAAGCTA-TAAGCCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* * * *
30367366 AGTGGAGCAGGTTGAAATAACAAG
66 AGTGGAGCAGATTGAAGTTATAAG
* * * * * * * *
30367390 TCTTATCTCCCTGAAATTACAATAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTAAAATTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* *
30367455 AGTGGAACAGATTGAAGCTATAA
66 AGTGGAGCAGATTGAAGTTATAA
30367478 ATTAGAGATC
Statistics
Matches: 564, Mismatches: 129, Indels: 37
0.77 0.18 0.05
Matches are distributed among these distances:
85 30 0.05
86 3 0.01
87 4 0.01
88 170 0.30
89 283 0.50
90 4 0.01
91 2 0.00
92 39 0.07
93 1 0.00
94 1 0.00
95 3 0.01
96 24 0.04
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATTGAAGTTATAAG
Found at i:30367065 original size:133 final size:132
Alignment explanation
Indices: 30366678--30367477 Score: 631
Period size: 133 Copynumber: 6.0 Consensus size: 132
30366668 TTATGGCGAA
* * * ** * *
30366678 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTAAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTACA
* * * * * * * * * * *
30366743 GTGGAGCAGGTTGAAGTTACAAGTTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGC
66 GTAGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-T
*
30366808 AAA
130 AAG
* * * * *
30366811 TCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTATAGATCTTATCTCTCTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-ATCTTATCTCCCTGA
** * * * * * *
30366876 AGTTGTAGTAGAGTAGATCATAG---CAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGA
59 AGTTACAGTAGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
*
30366938 AGTTATAAG
124 AGCTATAAG
* * * *
30366947 TCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTAC
* * * *
30367012 AGTAGAGCAGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAT
65 AGTAGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAT
30367077 -AG
130 AAG
* * * **
30367079 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTGT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTAC
* * * * * *
30367144 AGTAGAGTAGATCT-AAGATAGCAAATCTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCT
65 AGTAGAGCAGAT-TAAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
30367208 ATAAG
128 ATAAG
* * * ** * * * * * * *
30367213 CCTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTACA
* * * ** ** ** * * *
30367278 GTGGAGTATATCGAAGATGGTAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAAATTAAAGCTAT
66 GTAGAGCAGATTAAAGAT-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAT
30367343 AAG
130 AAG
* * * *
30367346 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATAACAAGTCTTATCTCCCTGAAATTAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAATCTTATCTCCCTGAAGTTAC
* * * * * * * *
30367410 AATAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTAAAATTGCAGTGGAACAGATTGAAGCTA
65 AGTAGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
30367475 TAA
129 TAA
30367478 ATTAGAGATC
Statistics
Matches: 535, Mismatches: 114, Indels: 36
0.78 0.17 0.05
Matches are distributed among these distances:
130 33 0.06
131 1 0.00
132 40 0.07
133 359 0.67
134 4 0.01
136 33 0.06
137 36 0.07
138 1 0.00
139 1 0.00
140 27 0.05
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (132 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTACA
GTAGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTATA
AG
Found at i:30367140 original size:177 final size:178
Alignment explanation
Indices: 30366678--30367477 Score: 740
Period size: 177 Copynumber: 4.5 Consensus size: 178
30366668 TTATGGCGAA
* * * ** * * * *
30366678 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTAAAGTTACA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
* * * * * * *
30366743 GTGGAGCAGGTTGAAGTTACAAGTTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGC
66 GTGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGC
* * * *
30366808 AAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTATAG
131 AAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGC--T-AA-TA-AG
* ** * * * *
30366861 ATCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-TCATAG-CA-A-ACCTTATCTCCCTAAAGTTG
1 -TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGA-AGTTATAGATCTTATCTCCCTAAAGTTG
* * * * *
30366922 CAGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATA
64 CAGTGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA
* * *
30366987 GCAAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCT-ATAAG
129 GCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
* * *
30367036 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
* *
30367101 GTGGAGCAGATTGAAGTTAT-AGATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATCT-AAGATA
66 GTGGAGCAGATTGAAGTTATAAG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT-TGAAGATA
* *
30367164 GCAAATCTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCT-ATAAG
129 GCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
* * * * *
30367213 CCTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
* * * ** * ** * * *
30367278 GTGGAGTATATCGAAGATGGTAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAAATTAAAGCTA-
66 GTGGAGCAGATTGAAG-TTATAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAG
* ** * ** *
30367342 TAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAA--TAACAAG
130 CAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATT-AAAGCTAATAAG
* * * * ** * *
30367390 TCTTATCTCCCTGAAATTACAATAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTAAAATTGC
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTATAG-ATCTTATCTCCCTAAAGTTGC
* *
30367455 AGTGGAACAGATTGAAGCTATAA
65 AGTGGAGCAGATTGAAGTTATAA
30367478 ATTAGAGATC
Statistics
Matches: 517, Mismatches: 86, Indels: 33
0.81 0.14 0.05
Matches are distributed among these distances:
174 29 0.06
175 5 0.01
176 6 0.01
177 261 0.50
178 70 0.14
179 2 0.00
181 112 0.22
182 1 0.00
183 4 0.01
184 27 0.05
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (178 bp):
TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
GTGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGC
AAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
Found at i:30371411 original size:40 final size:39
Alignment explanation
Indices: 30371366--30371573 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
30371356 CGGAATACAA
*
30371366 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
30371406 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
30371446 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** * *
30371486 CCGGATGTGGTCACTAGCAC-AATGGCCTTCAGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
30371526 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
30371566 CCGGATAT
1 CCGGATAT
30371574 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:30371506 original size:80 final size:80
Alignment explanation
Indices: 30371366--30371572 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
30371356 CGGAATACAA
* * *
30371366 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
* *
30371430 GCCTTCGGGTATTAGC
65 GCCTTCAGGTATTAAC
* * **
30371446 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
30371510 GCCTTCAGGTCTTAAC
65 GCCTTCAGGTATTAAC
** * ** * *
30371526 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
30371573 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCAGGTATTAAC
Found at i:30375239 original size:29 final size:30
Alignment explanation
Indices: 30375189--30375245 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
30375179 TGGTCCTTTT
* *
30375189 ATTTTTTATTTTATTTCTAATTT-GCCCAA
1 ATTTTTCATTTCATTTCTAATTTAGCCCAA
30375218 ATTTTTCATTTCATTT-TCAATTTAGCCC
1 ATTTTTCATTTCATTTCT-AATTTAGCCC
30375246 TTTTTTTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.79
30 4 0.17
ACGTcount: A:0.23, C:0.18, G:0.04, T:0.56
Consensus pattern (30 bp):
ATTTTTCATTTCATTTCTAATTTAGCCCAA
Found at i:30375360 original size:35 final size:34
Alignment explanation
Indices: 30375316--30375383 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 34
30375306 ATATTTTTTT
*
30375316 ATTAATTTATCATTATCATT-CTATTATTATATTA
1 ATTAATTTAT-ATTATCATTACTATAATTATATTA
* *
30375350 ATTAATTTTATGTTATTATTACTATAATTATATT
1 ATTAA-TTTATATTATCATTACTATAATTATATT
30375384 TTCTTTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 12 0.41
35 17 0.59
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.57
Consensus pattern (34 bp):
ATTAATTTATATTATCATTACTATAATTATATTA
Found at i:30375413 original size:33 final size:34
Alignment explanation
Indices: 30375314--30375419 Score: 96
Period size: 33 Copynumber: 3.1 Consensus size: 34
30375304 TTATATTTTT
* *
30375314 TTATTAA-TTTATCATTATCATT-CTATTATTATA
1 TTATTAATTTTAT-GTTATTATTACTATTATTATA
*
30375347 TTAATTAATTTTATGTTATTATTACTATAATTATA
1 TT-ATTAATTTTATGTTATTATTACTATTATTATA
**
30375382 TT-TTCTTTTTATGCTTA-T-TTACTTATTATTATA
1 TTATTAATTTTATG-TTATTATTAC-TATTATTATA
30375415 TTATT
1 TTATT
30375420 GTATCCTTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
32 4 0.07
33 23 0.38
34 17 0.28
35 17 0.28
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (34 bp):
TTATTAATTTTATGTTATTATTACTATTATTATA
Found at i:30375581 original size:15 final size:15
Alignment explanation
Indices: 30375556--30375609 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 15
30375546 CTTTAGATTT
30375556 TTATT-ATATCATTA
1 TTATTAATATCATTA
30375570 TTATTAATATCACCATTA
1 TTATTAATAT---CATTA
*
30375588 TTATTAATATTATTA
1 TTATTAATATCATTA
*
30375603 TTCTTAA
1 TTATTAA
30375610 GTTGTTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 5 0.15
15 14 0.41
18 15 0.44
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTAATATCATTA
Found at i:30378230 original size:22 final size:22
Alignment explanation
Indices: 30378199--30378240 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
30378189 CAAGGAACAC
30378199 CCGTCCGGGCTAAATCCTTTCT
1 CCGTCCGGGCTAAATCCTTTCT
*
30378221 CCGTCTGGGCTAAATCCTTT
1 CCGTCCGGGCTAAATCCTTT
30378241 TCTGCAACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.33
Consensus pattern (22 bp):
CCGTCCGGGCTAAATCCTTTCT
Found at i:30378332 original size:29 final size:29
Alignment explanation
Indices: 30378299--30378358 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
30378289 TCGGATTTCC
30378299 CTTTCTATTTCAACCAGGACATTTATCAT
1 CTTTCTATTTCAACCAGGACATTTATCAT
30378328 CTTTCTATTTCAACCAGGACATTTATCAT
1 CTTTCTATTTCAACCAGGACATTTATCAT
30378357 CT
1 CT
30378359 CTTGAATGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.42
Consensus pattern (29 bp):
CTTTCTATTTCAACCAGGACATTTATCAT
Found at i:30384524 original size:20 final size:20
Alignment explanation
Indices: 30384499--30384545 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
30384489 GCCTCACATG
30384499 CCCGTGTGCTTGAGGACACA
1 CCCGTGTGCTTGAGGACACA
*
30384519 CCCGTGTGCTTGGGGACACA
1 CCCGTGTGCTTGAGGACACA
30384539 CCCGTGT
1 CCCGTGT
30384546 CCCTCACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (20 bp):
CCCGTGTGCTTGAGGACACA
Found at i:30384699 original size:102 final size:103
Alignment explanation
Indices: 30384514--30384717 Score: 302
Period size: 102 Copynumber: 2.0 Consensus size: 103
30384504 GTGCTTGAGG
* * *
30384514 ACACACCCGTGTGCTTGGGGACACACCCGTGTCCCTCACCCGTGTTGAATTATCTGGATTTATTT
1 ACACACCCATGTGCTTGGGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATTT
* *
30384579 TACGCTTCTAACCTACAAGGG-TTTTACACAGCCAAGC
66 TACACTTCGAACCTACAAGGGTTTTTACACAGCCAAGC
* * *
30384616 ACACGCCCATGTGCTTGGGGACACAGCTGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATTT
1 ACACACCCATGTGCTTGGGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATTT
* * *
30384681 TCCATTTCGAACCTACAAGGGTTTTTACACGGCCAAG
66 TACACTTCGAACCTACAAGGGTTTTTACACAGCCAAG
30384718 TACATGCTTG
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 76 0.84
103 14 0.16
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (103 bp):
ACACACCCATGTGCTTGGGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATTT
TACACTTCGAACCTACAAGGGTTTTTACACAGCCAAGC
Found at i:30387773 original size:20 final size:20
Alignment explanation
Indices: 30387750--30387788 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
30387740 TAAAATACAT
* *
30387750 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
30387770 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
30387789 CAATCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:30391877 original size:39 final size:40
Alignment explanation
Indices: 30391756--30391947 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
30391746 GGATATAACG
* **
30391756 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
30391796 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
30391836 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * * *
30391875 ACTCACACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
** *
30391915 ACTTAACACAAA-GCCTTCGAGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
30391948 CATCATTCAA
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 84 0.66
41 11 0.09
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:30393315 original size:242 final size:242
Alignment explanation
Indices: 30392890--30393374 Score: 952
Period size: 242 Copynumber: 2.0 Consensus size: 242
30392880 ATCATTATCA
30392890 AGCTTGATATTTAACATGCAATGGCATTAACACCACATCCACTTTGGCCGAATATCATTCCCATG
1 AGCTTGATATTTAACATGCAATGGCATTAACACCACATCCACTTTGGCCGAATATCATTCCCATG
30392955 ACATAGCAAAGATTTGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAACATGCATAAA
66 ACATAGCAAAGATTTGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAACATGCATAAA
30393020 TCTCATGGCACAACCTCAAACATACCTCAATCTGGATGCAAGTATAGCCAAACCCCTTCCTAATC
131 TCTCATGGCACAACCTCAAACATACCTCAATCTGGATGCAAGTATAGCCAAACCCCTTCCTAATC
30393085 CTCTTCCAAACCAAACATGAAGCAAAAATTCCCTCTTCTTCCTTAGG
196 CTCTTCCAAACCAAACATGAAGCAAAAATTCCCTCTTCTTCCTTAGG
30393132 AGCTTGATATTTAACATGCAATGGCATTAACACCACATCCACTTTGGCCGAATATCATTCCCATG
1 AGCTTGATATTTAACATGCAATGGCATTAACACCACATCCACTTTGGCCGAATATCATTCCCATG
30393197 ACATAGCAAAGATTTGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAACATGCATAAA
66 ACATAGCAAAGATTTGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAACATGCATAAA
* *
30393262 TCTCATGGCACAACCTCAAACATACCTTAATCTTGATGCAAGTATAGCCAAACCCCTTCCTAATC
131 TCTCATGGCACAACCTCAAACATACCTCAATCTGGATGCAAGTATAGCCAAACCCCTTCCTAATC
30393327 CTCTTCCAAACCAAACATGAAGCAAAAATTCCCTCTTCTTCCTTAGG
196 CTCTTCCAAACCAAACATGAAGCAAAAATTCCCTCTTCTTCCTTAGG
30393374 A
1 A
30393375 TTTTCGGTCA
Statistics
Matches: 241, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 241 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (242 bp):
AGCTTGATATTTAACATGCAATGGCATTAACACCACATCCACTTTGGCCGAATATCATTCCCATG
ACATAGCAAAGATTTGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAACATGCATAAA
TCTCATGGCACAACCTCAAACATACCTCAATCTGGATGCAAGTATAGCCAAACCCCTTCCTAATC
CTCTTCCAAACCAAACATGAAGCAAAAATTCCCTCTTCTTCCTTAGG
Found at i:30400051 original size:72 final size:72
Alignment explanation
Indices: 30399847--30400056 Score: 253
Period size: 72 Copynumber: 2.9 Consensus size: 72
30399837 CTCATGGGTC
* * * * * *
30399847 TATACACAAAGTCAGCACCCGGACCCGAAAGCATTATCATG-TAATGC-CTGCTCATTGAGCTAC
1 TATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGAT-ATGCTC-GCTCAATGAGTTAC
*
30399910 TCACGGGCT
64 TCACGAGCT
* ** *
30399919 TATACACAAAGTCAGTACCCAGACCTTAAAACATTAACATGATATGCTCGCTCAACGAGTTACTC
1 TATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCGCTCAATGAGTTACTC
*
30399984 ACGAGTT
66 ACGAGCT
* * *
30399991 TATACACAAAGTCAGTACCTGGACCCCAAAACATTAACATGATATGCTCACTCAGTGAGTTACTC
1 TATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCGCTCAATGAGTTACTC
30400056 A
66 A
30400057 TGGGCCTGAT
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
72 116 0.98
73 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (72 bp):
TATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCGCTCAATGAGTTACTC
ACGAGCT
Found at i:30409887 original size:26 final size:26
Alignment explanation
Indices: 30409858--30409909 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30409848 ATCAAAAGGG
30409858 GATATTGAAATGGTTTCTTTTTCTTT
1 GATATTGAAATGGTTTCTTTTTCTTT
*
30409884 GATATTGGAATGGTTTCTTTTTCTTT
1 GATATTGAAATGGTTTCTTTTTCTTT
30409910 TTCTTATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.08, G:0.17, T:0.58
Consensus pattern (26 bp):
GATATTGAAATGGTTTCTTTTTCTTT
Found at i:30411562 original size:42 final size:41
Alignment explanation
Indices: 30411516--30411611 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 41
30411506 TGAATTTTCA
30411516 CACACTAAGTGCCAAAACATA-TCCGAAGCTAT-TTCAATCTCG
1 CACACTAAGTGCCAAAACATAGT-CGAAGCTATCTTCAA--TCG
* *
30411558 CACACTAAGTGCC-ATACATAGTCGAAGCTATCTTGAATCG
1 CACACTAAGTGCCAAAACATAGTCGAAGCTATCTTCAATCG
*
30411598 CACACTAAATGCCA
1 CACACTAAGTGCCA
30411612 TACATAGCCG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
40 15 0.31
41 15 0.31
42 18 0.38
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (41 bp):
CACACTAAGTGCCAAAACATAGTCGAAGCTATCTTCAATCG
Found at i:30411611 original size:40 final size:40
Alignment explanation
Indices: 30411516--30411623 Score: 130
Period size: 40 Copynumber: 2.6 Consensus size: 40
30411506 TGAATTTTCA
*
30411516 CACACTAAGTGCCAAAACATA-TCCGAAGCTATTTCAATCTCG
1 CACACTAAGTGCC-ATACATAGT-CGAAGCTATTTCAA-CTCG
*
30411558 CACACTAAGTGCCATACATAGTCGAAGCTATCTTGAA-TCG
1 CACACTAAGTGCCATACATAGTCGAAGCTAT-TTCAACTCG
* *
30411598 CACACTAAATGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGTCGAA
30411624 TTATCGTCAA
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
40 27 0.45
41 15 0.25
42 18 0.30
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGTCGAAGCTATTTCAACTCG
Found at i:30422138 original size:21 final size:23
Alignment explanation
Indices: 30422112--30422158 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
30422102 AAATCCTAAT
30422112 AAAAATAGGCTTAAAA-A-AATA
1 AAAAATAGGCTTAAAATAGAATA
**
30422133 AAAAATATTCTTAAAATAGAATA
1 AAAAATAGGCTTAAAATAGAATA
30422156 AAA
1 AAA
30422159 CTAACAACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 1 0.05
23 7 0.32
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.23
Consensus pattern (23 bp):
AAAAATAGGCTTAAAATAGAATA
Found at i:30433406 original size:45 final size:45
Alignment explanation
Indices: 30433342--30433432 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
30433332 TAAAGAGTCT
30433342 AACATATCCCATAAGTGTAGCATAAAGCTAAACACTCTCCAACAC
1 AACATATCCCATAAGTGTAGCATAAAGCTAAACACTCTCCAACAC
30433387 AACATATCCCATAAGTGTAGCATAAAGCTAAACACTCTCCAACAC
1 AACATATCCCATAAGTGTAGCATAAAGCTAAACACTCTCCAACAC
30433432 A
1 A
30433433 CCAACATGTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.43, C:0.29, G:0.09, T:0.20
Consensus pattern (45 bp):
AACATATCCCATAAGTGTAGCATAAAGCTAAACACTCTCCAACAC
Found at i:30441512 original size:47 final size:47
Alignment explanation
Indices: 30441453--30441574 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
30441443 ACATTGGCAC
30441453 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
30441500 TAAGACAAGGATACCATGTAAAACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
30441547 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
30441575 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:30441682 original size:55 final size:54
Alignment explanation
Indices: 30441561--30441749 Score: 220
Period size: 55 Copynumber: 3.5 Consensus size: 54
30441551 ATAAGGATAT
* * * ** *
30441561 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATGAGGCAAAGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
* * *
30441615 CATCTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGTAC
** *
30441670 CATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-TAC
* *
30441723 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
30441750 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
52 4 0.04
53 32 0.28
54 34 0.30
55 44 0.39
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
Found at i:30445307 original size:35 final size:35
Alignment explanation
Indices: 30445261--30445327 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
30445251 TCTATTGCTG
*
30445261 CAAAAATATTGTTCCCTTCAAAACTAGAAGAGTTA
1 CAAAAATATTGTTCCCTTCAAAACTAAAAGAGTTA
*
30445296 CAAAAATATTGTTCCCTTCAAGACTAAAAGAG
1 CAAAAATATTGTTCCCTTCAAAACTAAAAGAG
30445328 AAGTAAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (35 bp):
CAAAAATATTGTTCCCTTCAAAACTAAAAGAGTTA
Found at i:30459159 original size:11 final size:11
Alignment explanation
Indices: 30459143--30459195 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
30459133 TCTAATACCA
30459143 AATCATAGTCG
1 AATCATAGTCG
* *
30459154 AATCAT-TTCA
1 AATCATAGTCG
*
30459164 AATCATTGTCG
1 AATCATAGTCG
*
30459175 AATCATTGTCG
1 AATCATAGTCG
30459186 AATCATAGTC
1 AATCATAGTC
30459196 AAACAAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
10 8 0.22
11 28 0.78
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (11 bp):
AATCATAGTCG
Found at i:30459167 original size:21 final size:22
Alignment explanation
Indices: 30459141--30459195 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
30459131 TTTCTAATAC
30459141 CAAATCATAGTCGAATCATT-T
1 CAAATCATAGTCGAATCATTGT
*
30459162 CAAATCATTGTCGAATCATTGT
1 CAAATCATAGTCGAATCATTGT
*
30459184 CGAATCATAGTC
1 CAAATCATAGTC
30459196 AAACAAGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (22 bp):
CAAATCATAGTCGAATCATTGT
Found at i:30466402 original size:33 final size:33
Alignment explanation
Indices: 30466352--30466418 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
30466342 TTCTGGGCTA
* *
30466352 GGCCATGTGATCGACACGGCTAAGGCTAATTTG
1 GGCCATGTGATCCACACGGCCAAGGCTAATTTG
*
30466385 GGCCCTGTGATCCACACGGCCAAGGCTAATTTG
1 GGCCATGTGATCCACACGGCCAAGGCTAATTTG
30466418 G
1 G
30466419 ACCGTGTGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.22
Consensus pattern (33 bp):
GGCCATGTGATCCACACGGCCAAGGCTAATTTG
Found at i:30472809 original size:16 final size:18
Alignment explanation
Indices: 30472783--30472816 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
30472773 TAGAATTGGG
30472783 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
30472800 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
30472817 AAAAGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:30475834 original size:19 final size:19
Alignment explanation
Indices: 30475810--30475851 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
30475800 TTCAAATGTT
30475810 ACACGGCCTGGGCTGTGTC
1 ACACGGCCTGGGCTGTGTC
30475829 ACACGGCCTGGGCTGTGTC
1 ACACGGCCTGGGCTGTGTC
30475848 ACAC
1 ACAC
30475852 AGCCGTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.14, C:0.33, G:0.33, T:0.19
Consensus pattern (19 bp):
ACACGGCCTGGGCTGTGTC
Found at i:30476205 original size:23 final size:23
Alignment explanation
Indices: 30476174--30476221 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
30476164 TAGCTTAAAA
*
30476174 GAATGTAGAATTATTTCAAAGAT
1 GAATATAGAATTATTTCAAAGAT
*
30476197 GAATATAGAGTTATTTCAAAGAT
1 GAATATAGAATTATTTCAAAGAT
30476220 GA
1 GA
30476222 GTAAGTGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (23 bp):
GAATATAGAATTATTTCAAAGAT
Found at i:30478391 original size:19 final size:19
Alignment explanation
Indices: 30478367--30478406 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
30478357 CTTATGGTGA
30478367 ATGAAATGTGGTGAAAATG
1 ATGAAATGTGGTGAAAATG
30478386 ATGAAATGTGGTGAAAATG
1 ATGAAATGTGGTGAAAATG
30478405 AT
1 AT
30478407 TTGTGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (19 bp):
ATGAAATGTGGTGAAAATG
Found at i:30484610 original size:22 final size:22
Alignment explanation
Indices: 30484584--30484630 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
30484574 TATCGATAAT
30484584 ATCTCAAAATAATCCATAGGTA
1 ATCTCAAAATAATCCATAGGTA
30484606 ATCTCAAAATAATCCATAGGTA
1 ATCTCAAAATAATCCATAGGTA
30484628 ATC
1 ATC
30484631 ATACATTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.28
Consensus pattern (22 bp):
ATCTCAAAATAATCCATAGGTA
Found at i:30487501 original size:18 final size:18
Alignment explanation
Indices: 30487478--30487512 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
30487468 GAGAAGAAAA
* *
30487478 CAAGAGTGGTTTGGCTAG
1 CAAGAGCGGTTCGGCTAG
30487496 CAAGAGCGGTTCGGCTA
1 CAAGAGCGGTTCGGCTA
30487513 AAGAAAACTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (18 bp):
CAAGAGCGGTTCGGCTAG
Found at i:30493917 original size:34 final size:33
Alignment explanation
Indices: 30493851--30493917 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
30493841 AGTATCAGTA
**
30493851 CAGTCTGGGCCAAAGCCCTATTCAGTAACAATG
1 CAGTCTGGGCCAAAGCCCTAAACAGTAACAATG
** *
30493884 CAGTCTGGGCCTTAGCCCTTAAACAGTAGCAATG
1 CAGTCTGGGCCAAAGCCC-TAAACAGTAACAATG
30493918 TGGGCCCAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 16 0.57
34 12 0.43
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (33 bp):
CAGTCTGGGCCAAAGCCCTAAACAGTAACAATG
Found at i:30495379 original size:18 final size:18
Alignment explanation
Indices: 30495356--30495392 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
30495346 CAGAGAAGAA
*
30495356 AGCAAGAGTGGTTTGGCT
1 AGCAAGAGTGGTTCGGCT
30495374 AGCAAGAGTGGTTCGGCT
1 AGCAAGAGTGGTTCGGCT
30495392 A
1 A
30495393 AAGAAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.14, G:0.38, T:0.24
Consensus pattern (18 bp):
AGCAAGAGTGGTTCGGCT
Found at i:30501586 original size:28 final size:28
Alignment explanation
Indices: 30501555--30501787 Score: 209
Period size: 28 Copynumber: 8.3 Consensus size: 28
30501545 ATAGATAAGG
* *
30501555 AAAGCCTTTGTTGTGAGTCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * ** *
30501583 AAAGACTTTATGGCAATTCATAAAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * **
30501611 GAAGTCTTTGAAGTGATTCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
*
30501639 TAAA-CCTTTATGGTGATTCATAAAAAGA
1 -AAAGCCTTTGTGGTGATTCATAAAAAGA
* * * *
30501667 ATAGCCTTTGTGGCGAATCATAAAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * *
30501695 AAAGCCTTTGTGATGATTCATAGAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * *
30501723 AAAGCATTTATGGTGAATCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * *
30501751 ATAGCCTTTGTGGCGAATT-ATAAAAAGG
1 AAAGCCTTTGTGGTG-ATTCATAAAAAGA
30501779 AAAGCCTTT
1 AAAGCCTTT
30501788 ATGGCGAATC
Statistics
Matches: 159, Mismatches: 43, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
27 2 0.01
28 153 0.96
29 4 0.03
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.28
Consensus pattern (28 bp):
AAAGCCTTTGTGGTGATTCATAAAAAGA
Found at i:30501704 original size:84 final size:84
Alignment explanation
Indices: 30501567--30501787 Score: 286
Period size: 84 Copynumber: 2.6 Consensus size: 84
30501557 AGCCTTTGTT
* * * * * *
30501567 GTGAGTCATAAAAAGAAAAGACTTTATGGC-AATTCATAAAAAGGGAAGTCTTTGA-AGTGATTC
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAA-TCATAAAAAGGAAAGCCTTTGAGA-TGATTC
*
30501630 ATA-AAAAGATAAACCTTTATG
64 ATAGAAAAGA-AAACATTTATG
* *
30501651 GTGATTCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCCTTTGTGATGATTCAT
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCCTTTGAGATGATTCAT
* *
30501716 AGAAAGGAAAGCATTTATG
66 AGAAAAGAAAACATTTATG
*
30501735 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATTATAAAAAGGAAAGCCTTT
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCCTTT
30501788 ATGGCGAATC
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
84 114 0.93
85 8 0.07
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (84 bp):
GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCCTTTGAGATGATTCAT
AGAAAAGAAAACATTTATG
Found at i:30505021 original size:23 final size:24
Alignment explanation
Indices: 30504994--30505054 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
30504984 CTTAATCGAT
*
30504994 CATGTTCACGAATAT-TAAATAAA
1 CATGTTCACGAACATATAAATAAA
* * * *
30505017 TATGTTCATGAACATATCATTAAA
1 CATGTTCACGAACATATAAATAAA
30505041 CATGTTCACGAACA
1 CATGTTCACGAACA
30505055 ATGTTAATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 12 0.40
24 18 0.60
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (24 bp):
CATGTTCACGAACATATAAATAAA
Found at i:30505476 original size:26 final size:26
Alignment explanation
Indices: 30505447--30505504 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
30505437 TTGCACCCCT
* *
30505447 ATTTTCAA-TATAATGTTTATTAATTA
1 ATTTTCAACTATAATATTT-TTAAGTA
* *
30505473 ATTTTAAACTATATTATTTTTAAGTA
1 ATTTTCAACTATAATATTTTTAAGTA
30505499 ATTTTC
1 ATTTTC
30505505 TTAATTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.55
Consensus pattern (26 bp):
ATTTTCAACTATAATATTTTTAAGTA
Found at i:30512769 original size:2 final size:2
Alignment explanation
Indices: 30512762--30512790 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
30512752 CTAAGATTCC
30512762 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
30512791 GGTGAATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30518835 original size:54 final size:54
Alignment explanation
Indices: 30518770--30518873 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
30518760 TTTTAATAAT
30518770 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
1 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
30518824 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTC
1 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTC
30518874 CACACTAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (54 bp):
TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
Found at i:30519268 original size:16 final size:16
Alignment explanation
Indices: 30519244--30519280 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
30519234 AGAAAAAACA
*
30519244 AATATAAGACTTTCAT
1 AATACAAGACTTTCAT
30519260 AATACAAGACTTTCAT
1 AATACAAGACTTTCAT
30519276 AATAC
1 AATAC
30519281 TTTTTACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (16 bp):
AATACAAGACTTTCAT
Found at i:30530258 original size:2 final size:2
Alignment explanation
Indices: 30530251--30530295 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
30530241 CCTTTTCTTC
*
30530251 TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30530293 TA T
1 TA T
30530296 TCAGATGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:30532433 original size:10 final size:9
Alignment explanation
Indices: 30532420--30532472 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
30532410 AAAAATTAGA
30532420 AAAATGATAT
1 AAAAT-ATAT
*
30532430 AAAAATTTAT
1 -AAAATATAT
*
30532440 AAAATTTAT
1 AAAATATAT
30532449 AAAATATAT
1 AAAATATAT
*
30532458 AGAAATATAA
1 A-AAATATAT
30532468 AAAAT
1 AAAAT
30532473 TATTAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 22 0.58
10 11 0.29
11 5 0.13
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAATATAT
Found at i:30532443 original size:9 final size:9
Alignment explanation
Indices: 30532431--30532488 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
30532421 AAATGATATA
30532431 AAAATTTAT
1 AAAATTTAT
30532440 AAAATTTAT
1 AAAATTTAT
*
30532449 AAAATATAT
1 AAAATTTAT
*
30532458 AGAAATATA-
1 A-AAATTTAT
*
30532467 AAAAATTATT
1 AAAATTTA-T
*
30532477 AAATTTTAT
1 AAAATTTAT
30532486 AAA
1 AAA
30532489 GTCATAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
8 5 0.12
9 23 0.56
10 13 0.32
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
AAAATTTAT
Found at i:30532741 original size:30 final size:29
Alignment explanation
Indices: 30532680--30532743 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
30532670 GGTCATTAAT
* **
30532680 TTTTTTATGATTTTTATAAAATTTTACAA
1 TTTTTTATGACTTTTATAAAAAATTACAA
30532709 TTTTTTATGACTTTTATTAAAAAATT-CTAA
1 TTTTTTATGACTTTTA-TAAAAAATTAC-AA
30532739 TTTTT
1 TTTTT
30532744 AATAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTTTATGACTTTTATAAAAAATTACAA
Done.