Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 122 of 444
Found at i:31469963 original size:45 final size:46
Alignment explanation
Indices: 31469895--31470002 Score: 123
Period size: 45 Copynumber: 2.4 Consensus size: 46
31469885 TAAATGAATA
* *
31469895 ATTTCTCATTT-TC-ATTTTTGAGAAAACCACATTCATTTCCAAATG
1 ATTTCT-ATTTCTCTATTTTGGAGAAAACCACAATCATTTCCAAATG
* **
31469940 ATTT-TATTTCTCTATTTTGGAGAAAACCATAATCATTTCTGAATG
1 ATTTCTATTTCTCTATTTTGGAGAAAACCACAATCATTTCCAAATG
* *
31469985 TTTTCTATTTCTTTATTT
1 ATTTCTATTTCTCTATTT
31470003 CTATTCATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
43 4 0.08
44 3 0.06
45 34 0.64
46 12 0.23
ACGTcount: A:0.28, C:0.16, G:0.07, T:0.49
Consensus pattern (46 bp):
ATTTCTATTTCTCTATTTTGGAGAAAACCACAATCATTTCCAAATG
Found at i:31475362 original size:15 final size:14
Alignment explanation
Indices: 31475342--31475371 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
31475332 ACCATGTCCC
31475342 TAAACCCTAAAACCT
1 TAAACCCT-AAACCT
31475357 TAAACCCTAAACCT
1 TAAACCCTAAACCT
31475371 T
1 T
31475372 TATCTCTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:31478464 original size:31 final size:31
Alignment explanation
Indices: 31478423--31478486 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31478413 CCTTTTCATA
*
31478423 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
31478454 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
31478485 TT
1 TT
31478487 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:31478733 original size:24 final size:24
Alignment explanation
Indices: 31478680--31478813 Score: 146
Period size: 25 Copynumber: 5.4 Consensus size: 24
31478670 GCTTTATCAT
*
31478680 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* *
31478704 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
31478729 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
31478754 ACAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
*
31478779 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
31478804 ATAACTGGGG
1 ATAACTGGGG
31478814 TATCATACAT
Statistics
Matches: 98, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
24 29 0.30
25 69 0.70
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:31478839 original size:20 final size:20
Alignment explanation
Indices: 31478814--31478870 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
31478804 ATAACTGGGG
31478814 TATCATACATATCATGTGCA
1 TATCATACATATCATGTGCA
*
31478834 TATCATACATGTCATGTGCA
1 TATCATACATATCATGTGCA
31478854 TATCATACATATCATGT
1 TATCATACATATCATGT
31478871 TTATCAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
TATCATACATATCATGTGCA
Found at i:31479999 original size:27 final size:27
Alignment explanation
Indices: 31479957--31480194 Score: 192
Period size: 27 Copynumber: 8.7 Consensus size: 27
31479947 TTCATCCTAC
* * * *
31479957 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** *
31479984 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** * *
31480011 AATGGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
* *
31480039 CAAGGGTATTTCTGTAACTTTGTA-AATC-
1 -AAGGGTATTTCGGTAA-TTT-TACAAACT
* * *
31480067 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * *
31480094 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
*
31480121 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
31480148 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
**
31480175 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTCGGTAATTTT
31480195 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
25 2 0.01
26 5 0.03
27 133 0.79
28 7 0.04
29 19 0.11
30 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:31480127 original size:54 final size:54
Alignment explanation
Indices: 31479956--31480194 Score: 228
Period size: 54 Copynumber: 4.4 Consensus size: 54
31479946 TTTCATCCTA
* * * * * **
31479956 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * * * * * ** *
31480010 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCGGTAATTTTACAAAC
* * *
31480066 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * *
31480120 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* *
31480174 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
31480195 GTAAATCGAG
Statistics
Matches: 150, Mismatches: 31, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
54 99 0.66
55 16 0.11
56 35 0.23
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
Found at i:31480207 original size:81 final size:80
Alignment explanation
Indices: 31479956--31480208 Score: 226
Period size: 81 Copynumber: 3.1 Consensus size: 80
31479946 TTTCATCCTA
* * * * ** ** * *
31479956 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
31480021 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT--AAA-T
* * *
31480039 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTA
** ** *
31480101 TTTCGGTAATTTCACAAAC
63 TTTTAGTAATTT-TTAAAT
31480120 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
31480185 TAGTAATTTTGTAAAT
66 TAGTAATTTT-TAAAT
*
31480201 CGAGGGTA
1 CAAGGGTA
31480209 AAATAGTAAT
Statistics
Matches: 134, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 67 0.50
82 3 0.02
83 48 0.36
84 5 0.04
85 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTTTAAAT
Found at i:31480215 original size:27 final size:27
Alignment explanation
Indices: 31480185--31480310 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
31480175 AAGGGTATTT
*
31480185 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
31480212 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
*
31480239 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* *
31480266 TGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
31480293 CGGTAATTCTATAAATCG
1 TAGTAATTCTGTAAATCG
31480311 GAAGTACTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
26 2 0.02
27 86 0.96
28 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:31480218 original size:54 final size:54
Alignment explanation
Indices: 31480069--31480273 Score: 139
Period size: 54 Copynumber: 3.8 Consensus size: 54
31480059 TGTAAATCAG
* ** * ** * *
31480069 GGGTATTTTGGTAATTTTACAAATTGAGGGT-ATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT-GGTAATTTTACAAACTAA
* ** * ***
31480123 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTAGTAATTTTGTAAATCGA-GGGTAAAATGGTAATTTTACAAACTAA
* * ** *
31480177 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGA
1 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTACAAACTAA
** *
31480231 GGGTA--AAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGGTATTTTA-G-TAATTTTGTAAATCGAGGGTAAAATGGTAATT
31480274 CTATAAATCG
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 117 0.94
55 5 0.04
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTACAAACTAA
Found at i:31480228 original size:81 final size:82
Alignment explanation
Indices: 31480059--31480233 Score: 183
Period size: 81 Copynumber: 2.2 Consensus size: 82
31480049 TCTGTAACTT
* * *
31480059 TGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 TGTAAACTCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAA
*** * *
31480123 GGGTATTTTGGTAATTT
66 GGGTAAAATAGTAATTC
** * *** * *
31480140 TACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGA
1 TGTAAACTCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAA
31480204 GGGTAAAATAGTAATTC
66 GGGTAAAATAGTAATTC
*
31480221 TGTAAACTGAGGG
1 TGTAAACTCAGGG
31480234 TAAAACGATA
Statistics
Matches: 74, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 69 0.93
82 5 0.07
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (82 bp):
TGTAAACTCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAA
GGGTAAAATAGTAATTC
Found at i:31480274 original size:54 final size:54
Alignment explanation
Indices: 31480188--31480310 Score: 185
Period size: 54 Copynumber: 2.3 Consensus size: 54
31480178 GGTATTTTAG
* *
31480188 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATC-GAGGGTAAAACGA
* *
31480242 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGA
*
31480296 TAATTCTATAAATCG
1 TAATTCTGTAAATCG
31480311 GAAGTACTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGA
Found at i:31480339 original size:54 final size:54
Alignment explanation
Indices: 31480196--31480341 Score: 143
Period size: 54 Copynumber: 2.7 Consensus size: 54
31480186 AGTAATTTTG
* * ** *
31480196 TAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGAGTAAAATGGTAATTCTACAAATC-GAGGGTAAAACGATAATTCTA
* * *
31480250 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGAGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGATAATTCTA
*** * *
31480304 TAAATCG-GAAGTACTTTGGTAATTTTACAAGTCGAGGG
1 TAAATCGAG-AGTAAAATGGTAATTCTACAAATCGAGGG
31480342 CATTTCAGTA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 77 0.97
55 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (54 bp):
TAAATCGAGAGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGATAATTCTA
Found at i:31484678 original size:180 final size:179
Alignment explanation
Indices: 31484369--31484727 Score: 700
Period size: 180 Copynumber: 2.0 Consensus size: 179
31484359 TATTAAGATA
*
31484369 TACATAGCATATATTGAAGATGAATAAGCAAAATATACGAACATACAAAGTAATAATTAATTTAA
1 TACATAACATATATTGAAGATGAATAAGCAAAATATACGAACATACAAAGTAATAATTAATTTAA
31484434 AAAACGATGCATGATATACAATTAGACATATAAATATATATACAAAACAAATGTGATACTATATA
66 AAAACGATGCATGATATACAATTAGACATATAAATATATATACAAAACAAATGTGATACTATATA
31484499 AATAATAATAATAATGTAGCAACATATATATCAAACAAACAACACTTAAT
131 AA-AATAATAATAATGTAGCAACATATATATCAAACAAACAACACTTAAT
31484549 TACATAACATATATTGAAGATGAATAAGCAAAATATACGAACATACAAAGTAATAATTAATTTAA
1 TACATAACATATATTGAAGATGAATAAGCAAAATATACGAACATACAAAGTAATAATTAATTTAA
31484614 AAAACGATGCATGATATACAATTAGACATATAAATATATATACAAAACAAATGTGATACTATATA
66 AAAACGATGCATGATATACAATTAGACATATAAATATATATACAAAACAAATGTGATACTATATA
31484679 AAAATAATAATAATGTAGCAACATATATATCAAACAAACAACACTTAAT
131 AAAATAATAATAATGTAGCAACATATATATCAAACAAACAACACTTAAT
31484728 AATTATGAAA
Statistics
Matches: 178, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
179 47 0.26
180 131 0.74
ACGTcount: A:0.54, C:0.11, G:0.08, T:0.27
Consensus pattern (179 bp):
TACATAACATATATTGAAGATGAATAAGCAAAATATACGAACATACAAAGTAATAATTAATTTAA
AAAACGATGCATGATATACAATTAGACATATAAATATATATACAAAACAAATGTGATACTATATA
AAAATAATAATAATGTAGCAACATATATATCAAACAAACAACACTTAAT
Found at i:31484824 original size:16 final size:16
Alignment explanation
Indices: 31484805--31484853 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
31484795 ATAATTTACA
31484805 AATAAAAATATATAAT
1 AATAAAAATATATAAT
*
31484821 AATATAAATTATATAAT
1 AATA-AAAATATATAAT
31484838 -ATAAAAATAATATAAT
1 AATAAAAAT-ATATAAT
31484854 GTATGTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.14
16 14 0.48
17 11 0.38
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAAAAATATATAAT
Found at i:31484839 original size:5 final size:5
Alignment explanation
Indices: 31484819--31484952 Score: 52
Period size: 5 Copynumber: 27.2 Consensus size: 5
31484809 AAAATATATA
* * * *
31484819 ATAAT ATAA- ATTAT ATAAT ATAAAA ATAAT ATAAT GT-AT GTAAT ATAATGT
1 ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAA--T
* * * *
31484870 ATAA- A-AAT AAAAT ATTAT GAT-AT ATAGT AAAAT ATAAT ATGTAAT
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT A--TAAT
* *
31484915 A-AAT A-CAT A-AAT AGAAT ATAAT GA-AAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT A
31484953 AGGGACATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
3 2 0.02
4 22 0.22
5 59 0.59
6 7 0.07
7 10 0.10
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:31484852 original size:25 final size:25
Alignment explanation
Indices: 31484818--31484866 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
31484808 AAAAATATAT
31484818 AATAATATAAAT-TATATAATATAAA
1 AATAATAT-AATGTATATAATATAAA
*
31484843 AATAATATAATGTATGTAATATAA
1 AATAATATAATGTATATAATATAA
31484867 TGTATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (25 bp):
AATAATATAATGTATATAATATAAA
Found at i:31484867 original size:14 final size:14
Alignment explanation
Indices: 31484845--31484871 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31484835 AATATAAAAA
31484845 TAATATAATGTATG
1 TAATATAATGTATG
31484859 TAATATAATGTAT
1 TAATATAATGTAT
31484872 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
TAATATAATGTATG
Found at i:31484895 original size:30 final size:29
Alignment explanation
Indices: 31484830--31484895 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
31484820 TAATATAAAT
*
31484830 TATATAATATAAAAATAATATAATGTATG
1 TATATAATATAAAAATAAAATAATGTATG
31484859 TAATATAATGTATAAAAATAAAAT-AT-TATG
1 T-ATATAA--TATAAAAATAAAATAATGTATG
31484889 ATATATA
1 -TATATA
31484896 GTAAAATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 1 0.03
30 15 0.47
31 3 0.09
32 13 0.41
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (29 bp):
TATATAATATAAAAATAAAATAATGTATG
Found at i:31487219 original size:88 final size:88
Alignment explanation
Indices: 31487085--31487395 Score: 241
Period size: 88 Copynumber: 3.6 Consensus size: 88
31487075 TGCCCAAATA
* * * * * *
31487085 ATCTTGGATCTGC-TTCA-GT-ATAAACACCTGAAGGTTAGACCTGCTATGTACCTACTCTCCGT
1 ATCTTGGATCTGCTTTGATGTGA-AAACATCTGAAAGTCAGATCTGCTATATACCTACTCTCCGT
*
31487147 CGAAATGGAGATGCGAGATCTGTT
65 CGAAATGGAGATGCCAGATCTGTT
* * * *
31487171 ATCTTGGATCTGCTTTGATGTGAAAGCATCTGAAAGTCAGATCTGCTATAT-CTTCGATTTGTTC
1 ATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTATATAC--CTA-CT-CTC
* *** *
31487235 C-TTGTAAACACAAGAATGCCCAAATC----
62 CGTCG-AAA-TGGAG-ATG-CCAGATCTGTT
* * * * * *
31487261 ATCTTGGATCTGC-TTCA-GT-ATAAACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGT
1 ATCTTGGATCTGCTTTGATGTGA-AAACATCTGAAAGTCAGATCTGCTATATACCTACTCTCCGT
31487323 CGAAATGGAGATGCCAGATCTGTT
65 CGAAATGGAGATGCCAGATCTGTT
*
31487347 ATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTAT
1 ATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTAT
31487396 GTCTTCAATT
Statistics
Matches: 167, Mismatches: 37, Indels: 40
0.68 0.15 0.16
Matches are distributed among these distances:
82 6 0.04
83 3 0.02
84 2 0.01
85 6 0.04
86 29 0.17
87 9 0.05
88 72 0.43
89 8 0.05
90 16 0.10
91 6 0.04
92 2 0.01
93 3 0.02
94 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (88 bp):
ATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTATATACCTACTCTCCGTC
GAAATGGAGATGCCAGATCTGTT
Found at i:31487361 original size:86 final size:86
Alignment explanation
Indices: 31487085--31487361 Score: 253
Period size: 88 Copynumber: 3.2 Consensus size: 86
31487075 TGCCCAAATA
* *
31487085 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGTCGA
*
31487150 AATGGAGATGCGAGATCTGTT
66 AATGGAGATGCCAGATCTGTT
* * * * * * * * *
31487171 ATCTTGGATCTGCTTTGATGTGA-AAGCATCTGAAAGTCAGATCTGCTATAT-CTTCGATTTGTT
1 ATCTTGGATCTGC-TTCA-GT-ATAAACACCTGAAGGTTAGACCTGCTATATACCT-G--CT-CT
* *** *
31487234 CC-TTGTAAACACAAGAATGCCCAAATC----
59 CCGTCG-AAA-TGGAG-ATG-CCAGATCTGTT
31487261 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGTCGA
31487326 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGATCTGTT
31487347 ATCTTGGATCTGCTT
1 ATCTTGGATCTGCTT
31487362 TGATGTGAAA
Statistics
Matches: 142, Mismatches: 31, Indels: 36
0.68 0.15 0.17
Matches are distributed among these distances:
82 6 0.04
83 3 0.02
84 2 0.01
85 6 0.04
86 31 0.22
87 6 0.04
88 50 0.35
89 6 0.04
90 16 0.11
91 6 0.04
92 2 0.01
93 3 0.02
94 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (86 bp):
ATCTTGGATCTGCTTCAGTATAAACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGTCGA
AATGGAGATGCCAGATCTGTT
Found at i:31487436 original size:176 final size:176
Alignment explanation
Indices: 31486868--31487406 Score: 821
Period size: 176 Copynumber: 3.1 Consensus size: 176
31486858 AAATCTGTTG
* * * * * *
31486868 TGTCTTCAATTTGCTCATTGTGAACACAAGGATG-CCAAATCATCTTGGATCTGCTTTAGTA-AA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTTCAGTATAA
* * * * *
31486931 ATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGATATGCTAGATCTGTTA
66 A-CACCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTA
* * * * * *
31486996 TCTTGGATCTACTTTGGTGTGAGAACATCCAAAAGTCAAATCTACTA
130 TCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTA
* *
31487043 TGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCCAAATAATCTTGGATCTGCTTCAGTATAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTTCAGTATAA
* *
31487108 ACACCTGAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGAGATGCGAGATCTGTTAT
66 ACACCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTAT
* *
31487173 CTTGGATCTGCTTTGATGTGAAAGCATCTGAAAGTCAGATCTGCTA
131 CTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTA
*
31487219 TATCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTTCAGTATAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTTCAGTATAA
*
31487284 ACACCTGAAGGTTAGACCTGCTATATACCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTAT
66 ACACCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTAT
31487349 CTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTA
131 CTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTA
*
31487395 TGTCTTCAATTT
1 TGTCTTCGATTT
31487407 ACTTCTCGTT
Statistics
Matches: 330, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
175 28 0.08
176 299 0.91
177 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (176 bp):
TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTGCTTCAGTATAA
ACACCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTAT
CTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGCTA
Found at i:31499397 original size:14 final size:14
Alignment explanation
Indices: 31499380--31499427 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
31499370 AAAATATATA
31499380 ATAATATAAATTAT
1 ATAATATAAATTAT
31499394 ATAATATAAA--A-
1 ATAATATAAATTAT
31499405 ATAATAT-AATGTAT
1 ATAATATAAAT-TAT
*
31499419 GTAATATAA
1 ATAATATAA
31499428 TGTATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
10 2 0.07
11 7 0.25
12 1 0.04
13 1 0.04
14 16 0.57
15 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
ATAATATAAATTAT
Found at i:31499407 original size:25 final size:25
Alignment explanation
Indices: 31499379--31499427 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
31499369 AAAAATATAT
31499379 AATAATATAAAT-TATATAATATAAA
1 AATAATAT-AATGTATATAATATAAA
*
31499404 AATAATATAATGTATGTAATATAA
1 AATAATATAATGTATATAATATAA
31499428 TGTATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (25 bp):
AATAATATAATGTATATAATATAAA
Found at i:31499428 original size:14 final size:14
Alignment explanation
Indices: 31499406--31499432 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31499396 AATATAAAAA
31499406 TAATATAATGTATG
1 TAATATAATGTATG
31499420 TAATATAATGTAT
1 TAATATAATGTAT
31499433 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
TAATATAATGTATG
Found at i:31499456 original size:30 final size:29
Alignment explanation
Indices: 31499391--31499456 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
31499381 TAATATAAAT
*
31499391 TATATAATATAAAAATAATATAATGTATG
1 TATATAATATAAAAATAAAATAATGTATG
31499420 TAATATAATGTATAAAAATAAAAT-AT-TATG
1 T-ATATAA--TATAAAAATAAAATAATGTATG
31499450 ATATATA
1 -TATATA
31499457 GTAAATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 1 0.03
30 15 0.47
31 3 0.09
32 13 0.41
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (29 bp):
TATATAATATAAAAATAAAATAATGTATG
Found at i:31499466 original size:32 final size:31
Alignment explanation
Indices: 31499391--31499466 Score: 75
Period size: 32 Copynumber: 2.4 Consensus size: 31
31499381 TAATATAAAT
*
31499391 TATATAATATAAAAATAATATAATGTATGTAA
1 TATA-AATATAAAAATAAAATAATGTATGTAA
*
31499423 TATAATGTATAAAAATAAAAT-AT-TATGATATA
1 TATAA-ATATAAAAATAAAATAATGTATG-TA-A
31499455 TAGTAAATATAA
1 TA-TAAATATAA
31499467 TATGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
30 4 0.11
31 5 0.14
32 25 0.68
33 3 0.08
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (31 bp):
TATAAATATAAAAATAAAATAATGTATGTAA
Found at i:31499955 original size:16 final size:16
Alignment explanation
Indices: 31499934--31499975 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
31499924 TATTAGGGCT
*
31499934 AAATTAGAAATAAATA
1 AAATTAGAAATAAAAA
*
31499950 AAATTAG-ATTAAAAA
1 AAATTAGAAATAAAAA
31499965 AAATTAGAAAT
1 AAATTAGAAAT
31499976 GTGAGAGGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AAATTAGAAATAAAAA
Found at i:31501327 original size:3 final size:3
Alignment explanation
Indices: 31501321--31501407 Score: 70
Period size: 3 Copynumber: 29.0 Consensus size: 3
31501311 CTTATATCTT
* *
31501321 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TATT TAA TAA TCA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * * * * *
31501366 CAA TAA TAA TAC TTA TAA TATT TAA TAG TAA T-A CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
31501408 AAAATATGCT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
2 2 0.03
3 59 0.91
4 4 0.06
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:31501340 original size:33 final size:33
Alignment explanation
Indices: 31501301--31501407 Score: 144
Period size: 33 Copynumber: 3.2 Consensus size: 33
31501291 TATGTTGAAT
* *
31501301 AATAATAATACTTAT-ATCTTTAATAATAATAAT
1 AATAATAATACTTATAATATTTAATAATAAT-AC
* * *
31501334 AATAATAATAATAATAATATTTAATAATCATAC
1 AATAATAATACTTATAATATTTAATAATAATAC
*
31501367 AATAATAATACTTATAATATTTAATAGTAATAC
1 AATAATAATACTTATAATATTTAATAATAATAC
31501400 AATAATAA
1 AATAATAA
31501408 AAAATATGCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 51 0.80
34 13 0.20
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (33 bp):
AATAATAATACTTATAATATTTAATAATAATAC
Found at i:31501372 original size:11 final size:11
Alignment explanation
Indices: 31501322--31501407 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
31501312 TTATATCTTT
31501322 AATAATAAT--
1 AATAATAATAC
*
31501331 AATAATAATAAT
1 AATAATAAT-AC
*
31501343 AATAATAATATTT
1 AATAATAATA--C
*
31501356 AATAATCATAC
1 AATAATAATAC
31501367 AATAATAATAC
1 AATAATAATAC
* **
31501378 TTATAAT-ATTT
1 -AATAATAATAC
*
31501389 AATAGTAATAC
1 AATAATAATAC
31501400 AATAATAA
1 AATAATAA
31501408 AAAATATGCT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
9 9 0.15
10 4 0.07
11 22 0.37
12 14 0.24
13 10 0.17
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (11 bp):
AATAATAATAC
Found at i:31502168 original size:11 final size:11
Alignment explanation
Indices: 31502154--31502179 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
31502144 TAAGTTTTAA
31502154 TTTTTTTTTGT
1 TTTTTTTTTGT
31502165 TTTTTTTTTGT
1 TTTTTTTTTGT
31502176 TTTT
1 TTTT
31502180 CCGTTGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:31503726 original size:28 final size:27
Alignment explanation
Indices: 31503681--31503734 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
31503671 TAGTCAAACC
31503681 ATTAATTAGTTTTTATATGAA-ATTTTA
1 ATTAATTAGTTTTTATAT-AATATTTTA
31503708 ATTAATATA-TTTATTATATAATATTTT
1 ATTAAT-TAGTTT-TTATATAATATTTT
31503735 CCACTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (27 bp):
ATTAATTAGTTTTTATATAATATTTTA
Found at i:31504837 original size:19 final size:19
Alignment explanation
Indices: 31504788--31504854 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
31504778 TATAAAAACT
*
31504788 ATTTGAAAACTATAAAAT--
1 ATTT-AAAAATATAAAATAA
*
31504806 ATTATAAATATATAAAATAA
1 ATT-TAAAAATATAAAATAA
* *
31504826 ATTTAAAAATATGAAACAA
1 ATTTAAAAATATAAAATAA
31504845 ATTTATAAAA
1 ATTTA-AAAA
31504855 CCCAAAACTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 14 0.35
19 19 0.47
20 7 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
ATTTAAAAATATAAAATAA
Found at i:31505080 original size:30 final size:30
Alignment explanation
Indices: 31505044--31505102 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
31505034 AATAGTTTAT
31505044 ATTTTTA-TAATTTTTAAATAA-TTAAATTAA
1 ATTTTTAGT-ATTTTT-AATAAGTTAAATTAA
31505074 ATTTTTAGTATTTTTAATAAGTTAAATTA
1 ATTTTTAGTATTTTTAATAAGTTAAATTA
31505103 TTTTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 5 0.19
30 21 0.78
31 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
ATTTTTAGTATTTTTAATAAGTTAAATTAA
Found at i:31526727 original size:15 final size:15
Alignment explanation
Indices: 31526707--31526736 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31526697 AAAAGTTGGT
31526707 AGAATACTTGCTCTC
1 AGAATACTTGCTCTC
31526722 AGAATACTTGCTCTC
1 AGAATACTTGCTCTC
31526737 TTTCACGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (15 bp):
AGAATACTTGCTCTC
Found at i:31552205 original size:47 final size:48
Alignment explanation
Indices: 31552150--31552376 Score: 239
Period size: 47 Copynumber: 4.8 Consensus size: 48
31552140 TGGGTAAGGT
*
31552150 GCTGATGCCATGTCCCAGACACGGCCTTACACTGGCTCACATCTC-AA
1 GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCGAA
* * *
31552197 GTTGATGCCATGTCCCAGACACGGTCTTACACTGACT-ATCATCTCGTA
1 GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCA-CATCTCGAA
* * * * *
31552245 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAG
1 GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCGAA
* * * * * * *
31552293 GCCGATG-CATGTCCCAGGCA-TGTCTTACATTAGCTCTCGTCTC-AA
1 GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCGAA
* *
31552338 TGCTGATGCCATGTCCCAGAGATGGTCTTACACTGGCTC
1 -GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTC
31552377 TCATAATGTG
Statistics
Matches: 150, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 25 0.17
47 63 0.42
48 60 0.40
49 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCGAA
Found at i:31552334 original size:46 final size:48
Alignment explanation
Indices: 31552153--31552422 Score: 225
Period size: 47 Copynumber: 5.7 Consensus size: 48
31552143 GTAAGGTGCT
* * * * * * **
31552153 GATGCCATGTCCCAGACACGGCCTTACACTGGCTCACATCTC-AAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCGAGGCC
* * *
31552200 GATGCCATGTCCCAGACACGGTCTTACACT-GACTATCATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCGTCTCG-AGGCC
*
31552248 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGTCTCGAGGCC
* * * * *
31552296 GATG-CATGTCCCAGGCAT-GTCTTACATTAGCTCTCGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCGAGGCC
* * * * * *
31552342 GATGCCATGTCCCAGAGATGGTCTTACACTGGCTCTCATAAT-GTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-CTCGAGGCC
*
31552390 GATG-CATGTCCCAGACAT-GTATTACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
31552423 ACAAACAAAT
Statistics
Matches: 186, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
46 39 0.21
47 78 0.42
48 66 0.35
49 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCGAGGCC
Found at i:31552393 original size:94 final size:94
Alignment explanation
Indices: 31552149--31552422 Score: 270
Period size: 94 Copynumber: 2.9 Consensus size: 94
31552139 GTGGGTAAGG
* * * * * **
31552149 TGCTGATGCCATGTCCCAGACACGGCCTTACACTGGCTCACATCTC-AAGTTGATGCCATGTCCC
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGGCCGATG-CATGTCCC
* * * * *
31552213 AGACACGGTCTTACACT-GACTATCATCTC-G
65 AGACA-TGTATTACACTAG-CTCTCGTCTCAA
* * *
31552243 TAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCC
1 T-GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCC
* * *
31552308 AGGCATGTCTTACATTAGCTCTCGTCTCAA
65 AGACATGTATTACACTAGCTCTCGTCTCAA
* * *
31552338 TGCTGATGCCATGTCCCAGAGATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATGCATGTCC
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCC
31552401 CAGACATGTATTACACTAGCTC
64 CAGACATGTATTACACTAGCTC
31552423 ACAAACAAAT
Statistics
Matches: 151, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
94 89 0.59
95 56 0.37
96 6 0.04
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (94 bp):
TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCA
GACATGTATTACACTAGCTCTCGTCTCAA
Found at i:31559949 original size:46 final size:46
Alignment explanation
Indices: 31559804--31560074 Score: 230
Period size: 46 Copynumber: 5.8 Consensus size: 46
31559794 TGGGTAAGGT
* * *
31559804 GCCGATGCTATGTCCCAGACATGGTCTTACACTAG--CTCATATCTCAA
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCGTATC-GAG
* * * * * *
31559851 GTCGATGCCATGTCTCAGACACGGTCTTACACT-GACTATCATTTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCGTATCG-AG
* * *
31559899 GCCGATACATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTATCGAG
* * * *
31559945 GCCGATGCATGTCCCAGACATGTCATACACTAGCTCTCGTTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCGAG
* * *
31559991 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-ATCGAG
31560039 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
31560075 AGAAACAACT
Statistics
Matches: 185, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.01
46 78 0.42
47 67 0.36
48 30 0.16
49 8 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCGAG
Found at i:31560065 original size:140 final size:141
Alignment explanation
Indices: 31559804--31560069 Score: 362
Period size: 140 Copynumber: 1.9 Consensus size: 141
31559794 TGGGTAAGGT
* * * *
31559804 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCTCAG
1 GCCGATGCTATGTCCCAGACATGGTCATACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAA
*
31559869 ACACGGTCTTACACTGACTATCATTTCGTAGCCGATACATGTCCCAGACATGTCTTACACTGGCT
66 ACACGGTCTTACACTGACTATCATATCGTAGCCGATACATGTCCCAGACATGTCTTACACTGGCT
31559934 TACGTCTCGAG
131 TACGTCTCGAG
* *
31559945 GCCGATGC-ATGTCCCAGACAT-GTCATACACTAGCTC-TCGTTTCAATGCCGATGCCATGTCCC
1 GCCGATGCTATGTCCCAGACATGGTCATACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCC
* * * *
31560007 AAACATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
64 AAACACGGTCTTACACTGA-CTATCAT-ATCGTAGCCGATACATGTCCCAGACATGTCTTACACT
31560070 AGCTCAGAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.18
140 80 0.73
141 9 0.08
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCTATGTCCCAGACATGGTCATACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAA
ACACGGTCTTACACTGACTATCATATCGTAGCCGATACATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:31569245 original size:84 final size:83
Alignment explanation
Indices: 31569098--31569262 Score: 204
Period size: 84 Copynumber: 2.0 Consensus size: 83
31569088 AAACACATAT
* ** * * **
31569098 ATCAAATACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATGTCAATGCCTCTGTCCC
1 ATCAAATACAATGCCATATCCCAGACATGGTCTTACACATAATCACATATCAATGCCAATGTCCC
31569163 AGACAGGGTCTTACACAA
66 AGACAGGGTCTTACACAA
* * * *
31569181 ATCATATACGATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATATCAATGCCAATGTCC
1 ATCAAATACAATGCC-ATATCCCAGACATGGTCTTACACATAATCACATATCAATGCCAATGTCC
* *
31569246 CGGACATGGTCTTACAC
65 CAGACAGGGTCTTACAC
31569263 GAATTCAGGC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
83 13 0.19
84 55 0.81
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
ATCAAATACAATGCCATATCCCAGACATGGTCTTACACATAATCACATATCAATGCCAATGTCCC
AGACAGGGTCTTACACAA
Found at i:31569252 original size:43 final size:43
Alignment explanation
Indices: 31569106--31569262 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
31569096 ATATCAAATA
* * ** * * *
31569106 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATGT
1 CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
** *
31569148 CAATGCCTCTGTCCCAGACAGGGTCTTACACA-AA--TCATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
*
31569188 ACGATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
*
31569232 CAATGCCAATGTCCCGGACATGGTCTTACAC
1 CAATGCCAATGTCCCAGACATGGTCTTACAC
31569263 GAATTCAGGC
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
40 4 0.04
41 28 0.29
42 10 0.11
43 47 0.49
44 6 0.06
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
Found at i:31577973 original size:36 final size:36
Alignment explanation
Indices: 31577926--31577998 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
31577916 AATCGGACAA
31577926 TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAG
1 TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAG
31577962 TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAG
1 TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAG
31577998 T
1 T
31577999 AATGTTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (36 bp):
TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAG
Found at i:31584151 original size:34 final size:34
Alignment explanation
Indices: 31584063--31584144 Score: 137
Period size: 34 Copynumber: 2.4 Consensus size: 34
31584053 TCCAATGCTT
* *
31584063 AATTAAATTCGGCAACATATATATTTATATATAA
1 AATTCAATTCGGTAACATATATATTTATATATAA
*
31584097 AATTCAATTCGGTAACATATATATTTATATATAC
1 AATTCAATTCGGTAACATATATATTTATATATAA
31584131 AATTCAATTCGGTA
1 AATTCAATTCGGTA
31584145 TTATATAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (34 bp):
AATTCAATTCGGTAACATATATATTTATATATAA
Found at i:31586975 original size:17 final size:17
Alignment explanation
Indices: 31586955--31586987 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
31586945 TGAGTGATTT
31586955 ATTCAAAATAGCCGGTC
1 ATTCAAAATAGCCGGTC
31586972 ATTCAAAATAGCCGGT
1 ATTCAAAATAGCCGGT
31586988 GTGACTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (17 bp):
ATTCAAAATAGCCGGTC
Found at i:31597130 original size:2 final size:2
Alignment explanation
Indices: 31597123--31597148 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
31597113 GATATGGAAA
31597123 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
31597149 CCGGAAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31600085 original size:46 final size:46
Alignment explanation
Indices: 31600018--31600189 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
31600008 AACCCGCCCC
* *
31600018 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* ** *
31600064 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAAAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
31600112 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
31600157 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
31600190 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 28 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:31600130 original size:93 final size:93
Alignment explanation
Indices: 31600023--31600193 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
31600013 GCCCCTAAGT
* * *
31600023 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
31600088 CGAGTTCGGATGCCTAGTTAAATTTCAC
66 CGAGTTCGGATGCCTAGTTAAATTTCAC
*
31600116 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
31600181 CGAGTTCGGATGC
66 CGAGTTCGGATGC
31600194 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTAAATTTCAC
Found at i:31604084 original size:27 final size:27
Alignment explanation
Indices: 31603501--31604083 Score: 762
Period size: 27 Copynumber: 21.6 Consensus size: 27
31603491 AAAGTACTCC
*
31603501 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31603528 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
31603555 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31603582 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
31603609 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31603636 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31603663 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
31603690 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31603717 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
31603744 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31603771 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
31603798 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31603825 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31603852 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
31603879 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
31603905 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
31603933 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31603960 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31603987 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31604014 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31604041 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31604068 TGATTTACAAAATTAC
1 CGATTTACAGAATTAC
31604084 TAAAATACCC
Statistics
Matches: 497, Mismatches: 49, Indels: 20
0.88 0.09 0.04
Matches are distributed among these distances:
26 5 0.01
27 487 0.98
28 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:31604092 original size:27 final size:27
Alignment explanation
Indices: 31604035--31604096 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
31604025 ATTACTGTTT
* ****
31604035 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
31604062 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
31604089 TACCCTTG
1 TACCCTTG
31604097 GTTTGTGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:31605338 original size:25 final size:25
Alignment explanation
Indices: 31605309--31605356 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31605299 TTATAATATG
* * *
31605309 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
31605334 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
31605357 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:31605444 original size:20 final size:20
Alignment explanation
Indices: 31605399--31605457 Score: 102
Period size: 19 Copynumber: 3.0 Consensus size: 20
31605389 ATAAATATGG
31605399 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
31605419 -ATGTATGCTATGCACATGA
1 TATGTATGATATGCACATGA
31605438 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
31605458 GGTAATCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:31605552 original size:23 final size:24
Alignment explanation
Indices: 31605508--31605625 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
31605498 GAGGAAGTGA
*
31605508 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
31605532 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
31605555 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
31605578 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31605602 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
31605626 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
22 12 0.14
23 19 0.22
24 43 0.51
25 11 0.13
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:31605576 original size:46 final size:47
Alignment explanation
Indices: 31605509--31605604 Score: 158
Period size: 46 Copynumber: 2.1 Consensus size: 47
31605499 AGGAAGTGAA
31605509 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
31605555 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
31605602 AAA
1 AAA
31605605 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 33 0.72
47 13 0.28
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:31605850 original size:30 final size:31
Alignment explanation
Indices: 31605816--31605878 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
31605806 CGTTTACAGT
31605816 AAAGGCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
31605846 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31605877 AA
1 AA
31605879 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31608745 original size:27 final size:27
Alignment explanation
Indices: 31608712--31609294 Score: 737
Period size: 27 Copynumber: 21.6 Consensus size: 27
31608702 AAAGTACTCC
*
31608712 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31608739 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
31608766 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31608793 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
31608820 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31608847 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31608874 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
31608901 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31608928 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
31608955 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31608982 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
31609009 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31609036 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
31609063 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
31609090 CGATTTAAAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
31609116 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
31609144 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
31609171 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
31609198 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
31609225 CGATTTATAGAATTATCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
31609251 CTAATTTACATAATTACCATTTTACCCT
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
31609279 TGATTTACAAAATTAC
1 CGATTTACAGAATTAC
31609295 TAAAATACCC
Statistics
Matches: 490, Mismatches: 54, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.01
27 479 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:31614131 original size:93 final size:93
Alignment explanation
Indices: 31614019--31614189 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
31614009 GCCCATAAGT
* *
31614019 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
31614084 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
31614112 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
31614177 CGAGTTCGGATGC
66 CGAGCTCGGATGC
31614190 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:31614186 original size:46 final size:46
Alignment explanation
Indices: 31614011--31614186 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
31614001 TGTAACCCGC
* *
31614011 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
31614057 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
31614103 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
31614150 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
31614187 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:31616580 original size:28 final size:28
Alignment explanation
Indices: 31616546--31616609 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
31616536 CAAAGATAAC
31616546 AAGAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCAGAATAAAGAAATCC-AGATA
*
31616574 GAGAAACCAGAATAAAGAAATCCAGATA
1 AAGAAACCAGAATAAAGAAATCCAGATA
31616602 AAGAAACC
1 AAGAAACC
31616610 CAAGATACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 19 0.58
29 14 0.42
ACGTcount: A:0.59, C:0.16, G:0.16, T:0.09
Consensus pattern (28 bp):
AAGAAACCAGAATAAAGAAATCCAGATA
Found at i:31616602 original size:14 final size:14
Alignment explanation
Indices: 31616556--31616607 Score: 70
Period size: 14 Copynumber: 3.6 Consensus size: 14
31616546 AAGAAACCGA
31616556 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
*
31616571 ATAGAGAAA-CCAG
1 ATAAAGAAATCCAG
31616584 AATAAAGAAATCCAG
1 -ATAAAGAAATCCAG
31616599 ATAAAGAAA
1 ATAAAGAAA
31616608 CCCAAGATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 2 0.06
14 19 0.58
15 12 0.36
ACGTcount: A:0.62, C:0.12, G:0.15, T:0.12
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:31619155 original size:46 final size:46
Alignment explanation
Indices: 31619088--31619259 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
31619078 AACCCGCCCC
* *
31619088 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
31619134 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
31619182 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
31619227 TAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
31619260 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:31619200 original size:93 final size:93
Alignment explanation
Indices: 31619093--31619263 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
31619083 GCCCCTAAGT
* * * *
31619093 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
31619158 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
31619186 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
31619251 CGAGTTCGGATGC
66 CGAGTTCGGATGC
31619264 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:31623031 original size:2 final size:2
Alignment explanation
Indices: 31623024--31623066 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
31623014 GATTATTATG
31623024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31623066 A
1 A
31623067 CACATGTGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31624770 original size:93 final size:93
Alignment explanation
Indices: 31624658--31624829 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
31624648 CGCCCATAAG
* *
31624658 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31624723 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
31624751 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31624816 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
31624830 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:31624826 original size:46 final size:46
Alignment explanation
Indices: 31624651--31624826 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
31624641 TGTAACCCGC
* * *
31624651 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
31624697 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
31624747 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
31624790 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
31624827 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:31632292 original size:93 final size:93
Alignment explanation
Indices: 31632180--31632351 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
31632170 CGCCCATAAG
* *
31632180 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31632245 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
31632273 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31632338 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
31632352 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:31632348 original size:46 final size:46
Alignment explanation
Indices: 31632173--31632348 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
31632163 TGTAACCCGC
* * *
31632173 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
31632219 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
31632269 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
31632312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
31632349 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:31640285 original size:57 final size:58
Alignment explanation
Indices: 31640146--31640295 Score: 173
Period size: 58 Copynumber: 2.6 Consensus size: 58
31640136 CAACTAGCTT
* * * * *
31640146 GTTATAGAAAGGATTTAGCCTGGACGGGTAATCCTAATATAATACCTGTCGAGCATAC
1 GTTATATAAAGGATTTAGCATGGACTGGTAATCCTAATAAAATACCTCTCGAGCATAC
* *
31640204 GTTATGAT-TAGGGTTTAGCATGGACTGGTAATCCTAATAGAAAT-CCTCT-GAGC-TAAC
1 GTTAT-ATAAAGGATTTAGCATGGACTGGTAATCCTAATA-AAATACCTCTCGAGCAT-AC
*
31640261 GTTATATAAAGGATTTAGCTTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCATGGACTGGTAATCCT
31640296 GTTATACGAT
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
56 3 0.04
57 35 0.45
58 36 0.46
59 4 0.05
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCATGGACTGGTAATCCTAATAAAATACCTCTCGAGCATAC
Found at i:31648412 original size:134 final size:138
Alignment explanation
Indices: 31648267--31648523 Score: 326
Period size: 137 Copynumber: 1.9 Consensus size: 138
31648257 TTCATTATCT
* **
31648267 TTTTTCCCTTTCTCT-A-ATCTTTGTT-ATTTTCACTCGGCTTTTGTTTTTG-TTCTTATTCATT
1 TTTTTCCCTTTCTCTAATATCTTTGTTAATTTTCACTCGACTTTTGAGTTTGTTTCTTATTCATT
* * ** * * * *
31648328 CTATTATTTTTTTTGTGGTTGTTGGGTGGTTCAATATCTTTTGTTTTTACGGATTTAAGTTTCGG
66 CTATTA-ATTTCTTGCAGTTGGTGGGTGGTGCAATATCTGTTGTTTTCACGGATTTAAGTTTCGG
31648393 CTAATTGAG
130 CTAATTGAG
* * * *
31648402 TTTTT-CCTTTCTCTAATATTTTTTTTAATTTTCACTCGACTTTTGAGTTTGTTTCTTGTTGATT
1 TTTTTCCCTTTCTCTAATATCTTTGTTAATTTTCACTCGACTTTTGAGTTTGTTTCTTATTCATT
*
31648466 CTATTAATTTCTTGCAGTTGGTGGGTGGTGCAATCTCTGTTGTTTTCACGGATTTAAG
66 CTATTAATTTCTTGCAGTTGGTGGGTGGTGCAATATCTGTTGTTTTCACGGATTTAAG
31648524 CTTTAGGTAA
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
134 9 0.09
135 6 0.06
136 7 0.07
137 64 0.63
138 16 0.16
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (138 bp):
TTTTTCCCTTTCTCTAATATCTTTGTTAATTTTCACTCGACTTTTGAGTTTGTTTCTTATTCATT
CTATTAATTTCTTGCAGTTGGTGGGTGGTGCAATATCTGTTGTTTTCACGGATTTAAGTTTCGGC
TAATTGAG
Found at i:31657124 original size:5 final size:5
Alignment explanation
Indices: 31657114--31657146 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
31657104 AAATTTTTGT
31657114 TAAAA TAAAA TAAAA TAAAA TAAAA -AAAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
31657147 GAACACACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:31661567 original size:5 final size:5
Alignment explanation
Indices: 31661557--31661581 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
31661547 ACCAGTTTGT
31661557 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
31661582 ACAAAGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:31665687 original size:28 final size:27
Alignment explanation
Indices: 31665619--31665690 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 27
31665609 TTATTATTTT
31665619 AAAATTAAAAATATATAAAATTTTAAA
1 AAAATTAAAAATATATAAAATTTTAAA
*
31665646 AATTATTTAAAAATATAT-AAATTTATAAA
1 AA--AATTAAAAATATATAAAATTT-TAAA
*
31665675 AGAAATTATAAATATA
1 A-AAATTAAAAATATA
31665691 ATTCCATGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 2 0.05
28 17 0.45
29 18 0.47
30 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (27 bp):
AAAATTAAAAATATATAAAATTTTAAA
Found at i:31666027 original size:20 final size:20
Alignment explanation
Indices: 31665973--31666028 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
31665963 TTTTGTAATT
31665973 TTATATATTTT-AATTTTTCA
1 TTAT-TATTTTAAATTTTTCA
** * *
31665993 -TAAAATATTACATTTTTCA
1 TTATTATTTTAAATTTTTCA
31666012 TTATTATTTTAAATTTT
1 TTATTATTTTAAATTTT
31666029 AAAATATATA
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
18 4 0.15
19 10 0.38
20 12 0.46
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATTATTTTAAATTTTTCA
Found at i:31680867 original size:46 final size:47
Alignment explanation
Indices: 31680800--31680972 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 47
31680790 AACCCGCCCC
*
31680800 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GACCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCGTTCGCATCCA
*
31680846 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CC--GTTCGCATCCA
* * *
31680894 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCGTTCGCATCCA
*
31680939 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
31680973 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 59 0.54
47 31 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCGTTCGCATCCA
Found at i:31680917 original size:93 final size:93
Alignment explanation
Indices: 31680805--31680975 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
31680795 GCCCCTAAGT
*
31680805 GAACTCGGACTCAACTCAACGAGCTC-GACCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31680869 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
31680898 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
31680963 CGAGTTCGGATGC
66 CGAGTTCGGATGC
31680976 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:31683165 original size:3 final size:3
Alignment explanation
Indices: 31683157--31683196 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
31683147 CCAAATCTAA
31683157 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
31683197 GGATTTTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:31687837 original size:44 final size:43
Alignment explanation
Indices: 31687743--31687863 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 43
31687733 GATGCCTCTT
* *
31687743 TCCCAGACAGGGTCTTACACGAAA--TCAGATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCTCAGAT-CGAGGCCAATG
* **
31687785 TCCCAGACATGGTCTTACACGTAAATCTCAAATCGAGGCCTGTG
1 TCCCAGACATGGTCTTACACG-AAATCTCAGATCGAGGCCAATG
*
31687829 TCCCAGACATGGTCTTACACGATATCTCAGATCGA
1 TCCCAGACATGGTCTTACACGAAATCTCAGATCGA
31687864 TGTCAACGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 20 0.29
43 15 0.22
44 29 0.42
45 5 0.07
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCTCAGATCGAGGCCAATG
Found at i:31706239 original size:24 final size:24
Alignment explanation
Indices: 31706172--31706239 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 24
31706162 GGTTTGGCAA
*
31706172 CAGAAGCAATTTCAG-TTCATATT
1 CAGAAGCAATTTCAGTTTCATATG
*
31706195 CA-AAACAGA--TCAGTTAT-ATATG
1 CAGAAGCA-ATTTCAGTT-TCATATG
31706217 CAGAAGCAATTTCAGTTTCATAT
1 CAGAAGCAATTTCAGTTTCATAT
31706240 ACAAAACAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
21 4 0.11
22 12 0.34
23 9 0.26
24 10 0.29
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (24 bp):
CAGAAGCAATTTCAGTTTCATATG
Found at i:31706264 original size:46 final size:45
Alignment explanation
Indices: 31706172--31706266 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 45
31706162 GGTTTGGCAA
* * *
31706172 CAGAAGCAATTTCAGTTCATATTCAAAACAGATCAGTTATATATG
1 CAGAAGCAATTTCAGTTCATATACAAAACAGATCAGTTACAGATG
*
31706217 CAGAAGCAATTTCAGTTTCATATACAAAACAGATGAGATT-CAGATG
1 CAGAAGCAATTTCAG-TTCATATACAAAACAGATCAG-TTACAGATG
31706263 CAGA
1 CAGA
31706267 TATTCCTACC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 15 0.34
46 27 0.61
47 2 0.05
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (45 bp):
CAGAAGCAATTTCAGTTCATATACAAAACAGATCAGTTACAGATG
Found at i:31706841 original size:42 final size:42
Alignment explanation
Indices: 31706759--31706867 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
31706749 ATATGCCACT
* * *
31706759 CGGCCTGGACACATGCCCATGTCCTTGCCTATATGCCTCACA
1 CGGCCTGGACACACGCCCATGTCCTTACCCATATGCCTCACA
* *
31706801 CGGCCTAGACACACGCCCATGTCCTTACCCA-AGTGTCTCACA
1 CGGCCTGGACACACGCCCATGTCCTTACCCATA-TGCCTCACA
* ** *
31706843 CGACCTGGATGCACGCCTATGTCCT
1 CGGCCTGGACACACGCCCATGTCCT
31706868 CTACTTATGT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 55 0.98
ACGTcount: A:0.20, C:0.39, G:0.19, T:0.22
Consensus pattern (42 bp):
CGGCCTGGACACACGCCCATGTCCTTACCCATATGCCTCACA
Found at i:31707705 original size:14 final size:13
Alignment explanation
Indices: 31707682--31707711 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
31707672 AGACAAGAAA
31707682 AAAGATAAAAATG
1 AAAGATAAAAATG
31707695 AAAGAATAAAAATG
1 AAAG-ATAAAAATG
31707709 AAA
1 AAA
31707712 AACTAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAGATAAAAATG
Found at i:31707713 original size:22 final size:23
Alignment explanation
Indices: 31707679--31707726 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
31707669 TAAAGACAAG
31707679 AAAAAAGATAAAAAT-GAAAGAAT
1 AAAAAAGATAAAAATAGAAA-AAT
* *
31707702 AAAAATGA-AAAACTAGAAAAAT
1 AAAAAAGATAAAAATAGAAAAAT
31707724 AAA
1 AAA
31707727 TTAAAAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.12
Consensus pattern (23 bp):
AAAAAAGATAAAAATAGAAAAAT
Found at i:31714422 original size:68 final size:70
Alignment explanation
Indices: 31714350--31714547 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
31714340 ACACCCTGTA
* * * *
31714350 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
31714412 ATAAAT
65 ATAAAT
*
31714418 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
31714483 ATAAAT
65 ATAAAT
*
31714489 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
31714548 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:31714461 original size:41 final size:41
Alignment explanation
Indices: 31714416--31714533 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
31714406 TGAAAGATAA
31714416 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
31714457 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31714487 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31714528 ATGTAG
1 ATGTAG
31714534 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:31714473 original size:71 final size:71
Alignment explanation
Indices: 31714384--31714547 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
31714374 GAGATGTATC
31714384 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31714449 AGGACA
66 AGGACA
31714455 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31714520 AGGACA
66 AGGACA
31714526 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
31714548 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:31721989 original size:68 final size:70
Alignment explanation
Indices: 31721917--31722114 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
31721907 ACACCCTGTA
* * * *
31721917 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
31721979 ATAAAT
65 ATAAAT
*
31721985 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
31722050 ATAAAT
65 ATAAAT
*
31722056 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
31722115 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:31722028 original size:41 final size:41
Alignment explanation
Indices: 31721983--31722100 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
31721973 TGAAAGATAA
31721983 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
31722024 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31722054 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
31722095 ATGTAG
1 ATGTAG
31722101 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:31722040 original size:71 final size:71
Alignment explanation
Indices: 31721951--31722114 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
31721941 GAGATGTATC
31721951 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31722016 AGGACA
66 AGGACA
31722022 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
31722087 AGGACA
66 AGGACA
31722093 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
31722115 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:31725121 original size:93 final size:93
Alignment explanation
Indices: 31724962--31725134 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
31724952 CGCCCATAAG
* * * *
31724962 CGAACTCAGACTCAACTCGACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31725027 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
31725055 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
31725120 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
31725135 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:31725130 original size:46 final size:46
Alignment explanation
Indices: 31724955--31725130 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
31724945 TGTAACCCGC
* * * * * *
31724955 CCATAAGCGAACTCAGACTCAACTCGACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
31725001 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
31725051 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
31725094 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
31725131 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:31725149 original size:46 final size:47
Alignment explanation
Indices: 31725006--31725149 Score: 140
Period size: 46 Copynumber: 3.1 Consensus size: 47
31724996 CGCATCCATG
* * *
31725006 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* *
31725054 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
31725099 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
31725145 AGTGA
1 AGTGA
31725150 CATGTCACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 35 0.44
47 30 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:31727400 original size:16 final size:16
Alignment explanation
Indices: 31727373--31727416 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
31727363 AATCAAGTAT
31727373 AAAAATAAGAAAAAAG
1 AAAAATAAGAAAAAAG
*
31727389 ATAAAA-AAGAAAGAAG
1 A-AAAATAAGAAAAAAG
31727405 AAAAATGAAGAA
1 AAAAAT-AAGAA
31727417 CTAGAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 4 0.17
16 11 0.46
17 9 0.38
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAATAAGAAAAAAG
Found at i:31727768 original size:14 final size:14
Alignment explanation
Indices: 31727749--31727776 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31727739 TAATTACTGC
31727749 AAATTCTCAAAATT
1 AAATTCTCAAAATT
31727763 AAATTCTCAAAATT
1 AAATTCTCAAAATT
31727777 TTGGGGCGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATTCTCAAAATT
Found at i:31728163 original size:21 final size:21
Alignment explanation
Indices: 31728137--31728177 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
31728127 TTAAGAGATG
*
31728137 TTACTTGAATAGTTGTATCTC
1 TTACTTGAATAGTTATATCTC
*
31728158 TTACTTTAATAGTTATATCT
1 TTACTTGAATAGTTATATCT
31728178 ATTTAAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
TTACTTGAATAGTTATATCTC
Found at i:31729121 original size:16 final size:17
Alignment explanation
Indices: 31729100--31729133 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
31729090 AAAAAATAGC
31729100 TTTAATTTTT-GGGTTT
1 TTTAATTTTTGGGGTTT
31729116 TTTAATTTTTGGGGTTT
1 TTTAATTTTTGGGGTTT
31729133 T
1 T
31729134 CACATGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.12, C:0.00, G:0.21, T:0.68
Consensus pattern (17 bp):
TTTAATTTTTGGGGTTT
Found at i:31729219 original size:21 final size:20
Alignment explanation
Indices: 31729174--31729220 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
31729164 GGTTGATGAG
*
31729174 AAAAAATTAAATATAAATTA
1 AAAAAATTAAACATAAATTA
31729194 GAAAAAATTAAACATTAAATGTA
1 -AAAAAATTAAACA-TAAAT-TA
31729217 AAAA
1 AAAA
31729221 TATTTTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 9 0.39
23 2 0.09
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAAATTAAACATAAATTA
Found at i:31729526 original size:17 final size:17
Alignment explanation
Indices: 31729462--31729526 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 17
31729452 ACTATTCTTA
31729462 TAAC-TTCTTATACTTG
1 TAACTTTCTTATACTTG
31729478 TAACTTTCTT-TCCACCTTATG
1 TAACTTTCTTAT--A-C-T-TG
*
31729499 TATAATTTCTTATACTTG
1 TA-ACTTTCTTATACTTG
31729517 TAACTTTCTT
1 TAACTTTCTT
31729527 TCTTTCCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 15
0.70 0.04 0.27
Matches are distributed among these distances:
16 5 0.13
17 12 0.31
18 5 0.13
19 2 0.05
20 2 0.05
21 5 0.13
22 7 0.18
23 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.05, T:0.52
Consensus pattern (17 bp):
TAACTTTCTTATACTTG
Found at i:31732119 original size:16 final size:16
Alignment explanation
Indices: 31732098--31732129 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
31732088 AAATAAGAAT
31732098 ACCATCAAGAATGCCC
1 ACCATCAAGAATGCCC
31732114 ACCATCAAGAATGCCC
1 ACCATCAAGAATGCCC
31732130 TAGACTTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (16 bp):
ACCATCAAGAATGCCC
Found at i:31736277 original size:18 final size:18
Alignment explanation
Indices: 31736256--31736295 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
31736246 AAAATATGAG
31736256 ATTAATGATAGTAATAAT
1 ATTAATGATAGTAATAAT
31736274 ATTAATGATAGTAATAAT
1 ATTAATGATAGTAATAAT
31736292 ATTA
1 ATTA
31736296 TATAAATAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
ATTAATGATAGTAATAAT
Found at i:31741699 original size:16 final size:15
Alignment explanation
Indices: 31741674--31741721 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
31741664 CTATTTTAAG
31741674 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
31741689 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
31741706 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
31741721 T
1 T
31741722 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:31742633 original size:17 final size:18
Alignment explanation
Indices: 31742606--31742649 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
31742596 TATTTTATTA
*
31742606 TTTATTTTTATTTCATCT
1 TTTACTTTTATTTCATCT
31742624 TTTA-TTTTATTTCATCT
1 TTTACTTTTATTTCATCT
31742641 TTTACTTTT
1 TTTACTTTT
31742650 TACTTTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTACTTTTATTTCATCT
Found at i:31752062 original size:17 final size:16
Alignment explanation
Indices: 31752014--31752068 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
31752004 TAGGAAATTC
*
31752014 TATTTTAAATTTAT-T
1 TATTTTAATTTTATAT
*
31752029 TATTTTTAATTAT-TAT
1 TA-TTTTAATTTTATAT
31752045 TATTTTAGATTTTATAT
1 TATTTTA-ATTTTATAT
31752062 TAATTTT
1 T-ATTTT
31752069 CTTAAGCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 8 0.25
16 15 0.47
17 4 0.12
18 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TATTTTAATTTTATAT
Found at i:31752995 original size:19 final size:19
Alignment explanation
Indices: 31752948--31752987 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
31752938 TATTTTGTTA
31752948 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
31752967 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
31752986 TT
1 TT
31752988 AGTTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTCATCTT
Found at i:31756612 original size:13 final size:13
Alignment explanation
Indices: 31756596--31756621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31756586 TCATTACGCA
31756596 AACAAATGGTTTT
1 AACAAATGGTTTT
31756609 AACAAATGGTTTT
1 AACAAATGGTTTT
31756622 TTGAAACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:31759369 original size:15 final size:16
Alignment explanation
Indices: 31759344--31759373 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
31759334 TTTTATTACT
31759344 TTAATAAAAATATTTA
1 TTAATAAAAATATTTA
31759360 TTAA-AAAAATATTT
1 TTAATAAAAATATTT
31759374 TTTCTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAATAAAAATATTTA
Found at i:31760387 original size:39 final size:34
Alignment explanation
Indices: 31760348--31760415 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
31760338 TTATTCTAAA
31760348 ATAAAATAAAAGAAGTGTAATTCTATATGGATTT
1 ATAAAATAAAAGAAGTGTAATTCTATATGGATTT
31760382 ATAAAATAAAAGAAGTGTAATTCTATATGGATTT
1 ATAAAATAAAAGAAGTGTAATTCTATATGGATTT
31760416 TACTTTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (34 bp):
ATAAAATAAAAGAAGTGTAATTCTATATGGATTT
Found at i:31777720 original size:17 final size:19
Alignment explanation
Indices: 31777698--31777735 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
31777688 TTTCTGTTGG
31777698 TGACATT-TC-CAACTCTT
1 TGACATTGTCACAACTCTT
31777715 TGACATTGGTCACAACTCTT
1 TGACATT-GTCACAACTCTT
31777735 T
1 T
31777736 ACGTATGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (19 bp):
TGACATTGTCACAACTCTT
Found at i:31784165 original size:18 final size:19
Alignment explanation
Indices: 31784132--31784172 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
31784122 ATGTTCATAT
31784132 TTTTAACATAATTTAATTA
1 TTTTAACATAATTTAATTA
*
31784151 TTTTATCAT-ATTTAATTA
1 TTTTAACATAATTTAATTA
31784169 TTTT
1 TTTT
31784173 TTGACAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTAACATAATTTAATTA
Found at i:31789256 original size:46 final size:45
Alignment explanation
Indices: 31789198--31789464 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 45
31789188 TATGGGTTAT
* **
31789198 TGAGAGCTAGTGTAAGACATGTCTAAGACATGCATCGGCCACATTA
1 TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA
31789244 TGAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG--CATTGAGA
1 TGAGAGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCCATT---A
* * **
31789292 CGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GC
1 TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTA
* **
31789338 TGTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGA
1 TG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTA
* * ** *
31789382 -GATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACAGATATG
1 TGA-GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG--CCCAT-TA
*
31789432 TGAGAGCTAGTGTAAGACCATGTCTGGGACATG
1 TGAGAGCCAGTGTAAGA-CATGTCTGGGACATG
31789465 GCGTCAGCCT
Statistics
Matches: 180, Mismatches: 21, Indels: 37
0.76 0.09 0.16
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 12 0.07
45 19 0.11
46 63 0.35
47 29 0.16
48 22 0.12
49 3 0.02
50 27 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTA
Found at i:31789444 original size:94 final size:92
Alignment explanation
Indices: 31789199--31789464 Score: 292
Period size: 94 Copynumber: 2.8 Consensus size: 92
31789189 ATGGGTTATT
** * * *
31789199 GAGAGCTAGTGTAAGACATGTCTAAGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGAACA
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCAGATTGTGAGAGCCAGTGTAAG-ACA
*
31789264 TGTCTGGGACATGGCATCGGCATTGAGAC
65 TGTCTGGGACAT-GCATCGGCATCGAGAC
*
31789293 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GAGCTGT-A-AGCCAGTGTAAGA
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG--TCAGA-TTGTGAGAGCCAGTGTAAGA
*
31789355 CATGTCTGGGACATGCATCGGC-TACGAGAT
63 CATGTCTGGGACATGCATCGGCAT-CGAGAC
* * *
31789385 GTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGTACAGATATGTGAGAGCTAGTGTAAG
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGT-CAGAT-TGTGAGAGCCAGTGTAAG
31789448 ACCATGTCTGGGACATG
62 A-CATGTCTGGGACATG
31789465 GCGTCAGCCT
Statistics
Matches: 148, Mismatches: 12, Indels: 23
0.81 0.07 0.13
Matches are distributed among these distances:
90 10 0.07
91 17 0.11
92 26 0.18
93 16 0.11
94 59 0.40
95 17 0.11
96 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (92 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCAGATTGTGAGAGCCAGTGTAAGACAT
GTCTGGGACATGCATCGGCATCGAGAC
Found at i:31790575 original size:38 final size:38
Alignment explanation
Indices: 31790531--31790604 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
31790521 TTGATAAATT
31790531 GCTTATTATTTTCATACGGTCTTACTAAGCTATAAAAC
1 GCTTATTATTTTCATACGGTCTTACTAAGCTATAAAAC
31790569 GCTTATTATTTTCATACGGTCTTACTAAGCTATAAA
1 GCTTATTATTTTCATACGGTCTTACTAAGCTATAAA
31790605 GCTTAATCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.41
Consensus pattern (38 bp):
GCTTATTATTTTCATACGGTCTTACTAAGCTATAAAAC
Found at i:31796750 original size:18 final size:18
Alignment explanation
Indices: 31796729--31796763 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31796719 TCAGTAACAC
31796729 ATTCAGTCATAGTATCAT
1 ATTCAGTCATAGTATCAT
*
31796747 ATTCAGTCATGGTATCA
1 ATTCAGTCATAGTATCA
31796764 GTAGTTCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (18 bp):
ATTCAGTCATAGTATCAT
Found at i:31797492 original size:14 final size:14
Alignment explanation
Indices: 31797475--31797507 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
31797465 ATGTATATGT
31797475 ATGTATGTATGCAA
1 ATGTATGTATGCAA
*
31797489 ATGTATGTATGCAG
1 ATGTATGTATGCAA
31797503 ATGTA
1 ATGTA
31797508 CCAATTCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (14 bp):
ATGTATGTATGCAA
Found at i:31798633 original size:6 final size:6
Alignment explanation
Indices: 31798624--31798673 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
31798614 AATGAAGAAG
* * *
31798624 AATAAA AATAAAA AATAAA AGTAAA AATAAA TAATAAT AATAAT AATAAA
1 AATAAA AAT-AAA AATAAA AATAAA AATAAA -AATAAA AATAAA AATAAA
31798674 CAAATAAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 27 0.71
7 11 0.29
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
AATAAA
Found at i:31798649 original size:12 final size:13
Alignment explanation
Indices: 31798624--31798681 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
31798614 AATGAAGAAG
31798624 AATAAAAATAAAA
1 AATAAAAATAAAA
*
31798637 AATAAAAGT-AAA
1 AATAAAAATAAAA
*
31798649 AATAAATAAT-AAT
1 AATAAA-AATAAAA
*
31798662 AATAATAATAAACA
1 AATAAAAATAAA-A
31798676 AATAAA
1 AATAAA
31798682 CTAAATAACT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
12 12 0.33
13 19 0.53
14 5 0.14
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.21
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:31798650 original size:19 final size:18
Alignment explanation
Indices: 31798624--31798686 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 18
31798614 AATGAAGAAG
31798624 AATAAAAATAAAAAATAA
1 AATAAAAATAAAAAATAA
*
31798642 AAGTAAAAATAAATAATAA
1 AA-TAAAAATAAAAAATAA
*
31798661 TAATAATAATAAACAAATAA
1 -AATAAAAATAAA-AAATAA
*
31798681 ACTAAA
1 AATAAA
31798687 TAACTATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
18 2 0.05
19 28 0.76
20 7 0.19
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.21
Consensus pattern (18 bp):
AATAAAAATAAAAAATAA
Found at i:31807124 original size:22 final size:23
Alignment explanation
Indices: 31807098--31807141 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
31807088 CCTGATCAGA
31807098 ATACGACACAT-AAGTGCCTGAC
1 ATACGACACATAAAGTGCCTGAC
31807120 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
31807142 TCAGTAAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAC
Found at i:31807358 original size:23 final size:24
Alignment explanation
Indices: 31807332--31807426 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
31807322 AAATGTCCAA
31807332 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
31807355 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
31807383 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
31807412 CCAAAACACACCAGA
1 CCAAAACACACCAGA
31807427 ATAGCACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:31807428 original size:29 final size:28
Alignment explanation
Indices: 31807346--31807429 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
31807336 AACACACCAG
* *
31807346 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
31807374 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
31807402 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
31807430 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Done.