Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 124 of 444
Found at i:32106640 original size:39 final size:39
Alignment explanation
Indices: 32106581--32106719 Score: 197
Period size: 39 Copynumber: 3.6 Consensus size: 39
32106571 TCGTGATCTA
* ** *
32106581 AAGCCCGAAGTCTAGTTGAAGCACATAAGTGCTAAACGG
1 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGG
* *
32106620 AAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACAG
1 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGG
* *
32106659 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATGA
1 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGG
*
32106698 AAGCCCGAAGGCTAATTGAAGC
1 AAGCCCGAAGGCTAACTGAAGC
32106720 TCATTAAAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.14
Consensus pattern (39 bp):
AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGG
Found at i:32106717 original size:19 final size:19
Alignment explanation
Indices: 32106659--32106717 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
32106649 TGTTAAACAG
*
32106659 AAGCCCGAAGGCTAACTG-
1 AAGCCCGAAGGCTAAATGA
32106677 AAGCACAC-AAGTGCTAAATGA
1 AAGC-C-CGAAG-GCTAAATGA
*
32106698 AAGCCCGAAGGCTAATTGA
1 AAGCCCGAAGGCTAAATGA
32106717 A
1 A
32106718 GCTCATTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.12
19 14 0.41
20 12 0.35
21 4 0.12
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.14
Consensus pattern (19 bp):
AAGCCCGAAGGCTAAATGA
Found at i:32106756 original size:21 final size:21
Alignment explanation
Indices: 32106732--32106782 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
32106722 ATTAAAGCTG
32106732 AACTGAAACCCCAAAAGGGTT
1 AACTGAAACCCCAAAAGGGTT
32106753 AACTGAAACCCCAAAAGGGTT
1 AACTGAAACCCCAAAAGGGTT
32106774 AACTGAAAC
1 AACTGAAAC
32106783 TCATATGAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.45, C:0.24, G:0.18, T:0.14
Consensus pattern (21 bp):
AACTGAAACCCCAAAAGGGTT
Found at i:32119869 original size:20 final size:20
Alignment explanation
Indices: 32119827--32119871 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
32119817 ATATGCCACG
*
32119827 AAGGCTAACAAAATGCCTTA
1 AAGGCTAACAAAATGCCTCA
32119847 AAGGCTAACAAAATG-CTACA
1 AAGGCTAACAAAATGCCT-CA
32119867 AAGGC
1 AAGGC
32119872 CCAATCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.16
Consensus pattern (20 bp):
AAGGCTAACAAAATGCCTCA
Found at i:32129281 original size:39 final size:39
Alignment explanation
Indices: 32129229--32129427 Score: 326
Period size: 39 Copynumber: 5.1 Consensus size: 39
32129219 AATTATATTA
*
32129229 CCAGCACAAAGCCTGCGGAACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
32129268 CCAACACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
**
32129307 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
32129346 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
32129385 CTAGCACAAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
32129424 CCAG
1 CCAG
32129428 TGTCTTGAAT
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 148 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:32135163 original size:64 final size:64
Alignment explanation
Indices: 32135062--32135192 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
32135052 AAACAACCCG
*
32135062 TACGCTGAGTATACACCCGGTGGTATTACTATAATTCAAATACTTATGGTAAAAACAATATATA
1 TACGCTGAGTATACACCCGGTAGTATTACTATAATTCAAATACTTATGGTAAAAACAATATATA
32135126 TACGCTGAGTATACACCCGGTAGTATTACTATAATTCAAATACTTATGGTAAAAACAATATATA
1 TACGCTGAGTATACACCCGGTAGTATTACTATAATTCAAATACTTATGGTAAAAACAATATATA
32135190 TAC
1 TAC
32135193 ACATTAAATC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (64 bp):
TACGCTGAGTATACACCCGGTAGTATTACTATAATTCAAATACTTATGGTAAAAACAATATATA
Found at i:32136147 original size:18 final size:17
Alignment explanation
Indices: 32136120--32136195 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 17
32136110 AAATTCACAT
32136120 TTCAAA-TCACTTTCAA
1 TTCAAATTCACTTTCAA
*
32136136 TGTCAATTTCACTTTCAA
1 T-TCAAATTCACTTTCAA
32136154 TTCAAATTCA----CAA
1 TTCAAATTCACTTTCAA
* *
32136167 -TC-AATTCTCATTCAA
1 TTCAAATTCACTTTCAA
32136182 TTCAAATTCACTTT
1 TTCAAATTCACTTT
32136196 TCCACTTTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
11 5 0.11
12 2 0.04
13 3 0.06
15 3 0.06
16 3 0.06
17 20 0.43
18 11 0.23
ACGTcount: A:0.34, C:0.24, G:0.01, T:0.41
Consensus pattern (17 bp):
TTCAAATTCACTTTCAA
Found at i:32136428 original size:86 final size:78
Alignment explanation
Indices: 32136356--32136503 Score: 179
Period size: 79 Copynumber: 1.8 Consensus size: 78
32136346 TCATATTTTT
* *
32136356 AATTCATTTTCCAATCAAATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAATACTC
1 AATTCAATTT-CAATC-AATTCAAATCACT-ATTACTTTCCAATCAATATAC-TTTCAAATACTC
**
32136421 ACATATTTTCTTCATTC
62 ACATATTTAATTCATTC
* * * * *
32136438 AATTCAATTTGATTCAATTCAAATCACTCTTAGTTTCCAATCAATATACTTTCAAATATTCACAT
1 AATTCAATTTCAATCAATTCAAATCACTATTACTTTCCAATCAATATACTTTCAAATACTCACAT
32136503 A
66 A
32136504 ATTCATAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
78 16 0.27
79 18 0.31
80 13 0.22
81 3 0.05
82 9 0.15
ACGTcount: A:0.37, C:0.21, G:0.01, T:0.41
Consensus pattern (78 bp):
AATTCAATTTCAATCAATTCAAATCACTATTACTTTCCAATCAATATACTTTCAAATACTCACAT
ATTTAATTCATTC
Found at i:32136429 original size:75 final size:76
Alignment explanation
Indices: 32136347--32136503 Score: 169
Period size: 78 Copynumber: 2.1 Consensus size: 76
32136337 TTATTTAATT
*
32136347 CATA-TTT-TTAATTC-ATT-TTCCAATCAAATTCAAATCACTAATTACTTTTCAATCAATATAC
1 CATATTTTCTTAATTCAATTATTCCAATC-AATTCAAATCACT-ATTACTTTCCAATCAATATAC
32136408 ATTTCAAATACTCA
64 -TTTCAAATACTCA
* ** * * *
32136422 CATATTTTCTTCATTCAATTCAATTTGATTCAATTCAAATCACTCTTAGTTTCCAATCAATATAC
1 CATATTTTCTTAATTCAATT--ATTCCAATCAATTCAAATCACTATTACTTTCCAATCAATATAC
*
32136487 TTTCAAATATTCA
64 TTTCAAATACTCA
32136500 CATA
1 CATA
32136504 ATTCATAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
75 4 0.06
76 3 0.04
77 6 0.09
78 19 0.28
79 18 0.26
80 13 0.19
81 5 0.07
ACGTcount: A:0.36, C:0.20, G:0.01, T:0.42
Consensus pattern (76 bp):
CATATTTTCTTAATTCAATTATTCCAATCAATTCAAATCACTATTACTTTCCAATCAATATACTT
TCAAATACTCA
Found at i:32137540 original size:3 final size:3
Alignment explanation
Indices: 32137532--32137626 Score: 110
Period size: 3 Copynumber: 33.0 Consensus size: 3
32137522 TAATTTATTT
32137532 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
32137580 TCA TAA T-T TAA TAA T-T TAA T-A TAA -AA CT-A TAA TAA TAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
32137621 TAA TAA
1 TAA TAA
32137627 ATATCTATTT
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
2 7 0.09
3 71 0.91
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:32137930 original size:24 final size:25
Alignment explanation
Indices: 32137902--32137948 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
32137892 AATAACATTA
*
32137902 ATAATAATATTTA-AATAAAAAACC
1 ATAATAATAATTATAATAAAAAACC
32137926 ATAATAATAATTATAATAAAAAA
1 ATAATAATAATTATAATAAAAAA
32137949 TTGATAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (25 bp):
ATAATAATAATTATAATAAAAAACC
Found at i:32137957 original size:20 final size:21
Alignment explanation
Indices: 32137930--32137976 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
32137920 AAAACCATAA
32137930 TAATAATTATAATA-AAAAAT
1 TAATAATTATAATAGAAAAAT
* * *
32137950 TGATAATTGTTATAGAAAAAT
1 TAATAATTATAATAGAAAAAT
32137971 TAATAA
1 TAATAA
32137977 AACAATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (21 bp):
TAATAATTATAATAGAAAAAT
Found at i:32142964 original size:20 final size:20
Alignment explanation
Indices: 32142939--32142979 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32142929 GAAAAGAGAT
32142939 AGAATTTTAGGTTGGTGATA
1 AGAATTTTAGGTTGGTGATA
32142959 AGAATTTTAGGTTGGTGATA
1 AGAATTTTAGGTTGGTGATA
32142979 A
1 A
32142980 AGTATTCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (20 bp):
AGAATTTTAGGTTGGTGATA
Found at i:32147510 original size:50 final size:49
Alignment explanation
Indices: 32147435--32147563 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 49
32147425 ATTTGTGTGC
* *
32147435 CAGTGTAAGA-CATGTCTAGGACATGGCATCGGCAC-GGATATGT-GAAAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-T-TCGAAAGT
* * *
32147483 CTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAAAGT
32147533 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
32147564 AACTTGATGG
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
48 2 0.03
49 43 0.62
50 24 0.35
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAAAGT
Found at i:32153115 original size:25 final size:25
Alignment explanation
Indices: 32153084--32153167 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 25
32153074 TTAGCGCGCA
* *
32153084 CTCTGATTTTTAACACGTTAGTGCT
1 CTCTGATTATTAGCACGTTAGTGCT
* *
32153109 CTTTGATTATTAGCACGTTATTGCT
1 CTCTGATTATTAGCACGTTAGTGCT
* *
32153134 CTCTAATTATTAGCATGTTAGTGCT
1 CTCTGATTATTAGCACGTTAGTGCT
*
32153159 CTCCGATTA
1 CTCTGATTA
32153168 GCACATTTGT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.44
Consensus pattern (25 bp):
CTCTGATTATTAGCACGTTAGTGCT
Found at i:32174051 original size:2 final size:2
Alignment explanation
Indices: 32174044--32174092 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
32174034 ACTCGGTATC
32174044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32174086 AT AT AT A
1 AT AT AT A
32174093 CACCAAACCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32174608 original size:11 final size:12
Alignment explanation
Indices: 32174578--32174612 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32174568 AAAAACAAGG
32174578 GAGAAAGAAAAA
1 GAGAAAGAAAAA
32174590 GAGAAAGAAAAA
1 GAGAAAGAAAAA
*
32174602 GA-CAAGAAAAA
1 GAGAAAGAAAAA
32174613 TTAGGTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (12 bp):
GAGAAAGAAAAA
Found at i:32175220 original size:27 final size:25
Alignment explanation
Indices: 32175164--32175225 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
32175154 ACCTTAGCGC
32175164 GCTCTCTGATTATTAGCACGTAAGT
1 GCTCTCTGATTATTAGCACGTAAGT
*
32175189 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACGTAAGT
*
32175214 GCTCTCTAATTA
1 GCTCTCTGATTA
32175226 GCACATCTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTAAGT
Found at i:32182613 original size:40 final size:40
Alignment explanation
Indices: 32182548--32182632 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
32182538 TCGTGCCCTG
* *
32182548 CACACGGCCATGCATTCATCGATCACACGACCGTGTCTCA
1 CACACGGCCATGCATTCATCAATCACACGACCATGTCTCA
* * * *
32182588 CACACGGCCATGCCTTCGTTAATCACACGGCCATGTCTCA
1 CACACGGCCATGCATTCATCAATCACACGACCATGTCTCA
*
32182628 TACAC
1 CACAC
32182633 AACCAACCAC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.38, G:0.16, T:0.21
Consensus pattern (40 bp):
CACACGGCCATGCATTCATCAATCACACGACCATGTCTCA
Found at i:32205151 original size:14 final size:14
Alignment explanation
Indices: 32205134--32205161 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32205124 CTATTTTGTT
32205134 TCTATTTCCTTCCA
1 TCTATTTCCTTCCA
32205148 TCTATTTCCTTCCA
1 TCTATTTCCTTCCA
32205162 AAGAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.36, G:0.00, T:0.50
Consensus pattern (14 bp):
TCTATTTCCTTCCA
Found at i:32207151 original size:21 final size:21
Alignment explanation
Indices: 32207101--32207152 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
32207091 TAGCTTATTA
*
32207101 GCATGATTAAATTGTCTTAAT
1 GCATGATTTAATTGTCTTAAT
32207122 GCATG-TTTAATGTGTCTTAA-
1 GCATGATTTAAT-TGTCTTAAT
*
32207142 GGATGATTTAA
1 GCATGATTTAA
32207153 GGCAAATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (21 bp):
GCATGATTTAATTGTCTTAAT
Found at i:32210868 original size:46 final size:45
Alignment explanation
Indices: 32210713--32210933 Score: 207
Period size: 46 Copynumber: 4.8 Consensus size: 45
32210703 CATTGCTGTT
* **
32210713 ATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCATATT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACC-TAAG
* * * *
32210759 ATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ATGTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CTAAG
* * *
32210807 ACG-AGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAG
1 ATGTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCT-AAG
* * *
32210853 ATGTAAGCCAGTGTAAGACATGTTTGAGACATGCATCG-GCTATGAG
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTA--AG
* *
32210899 ATGT--GCTAGTGTAAGACATGTTTGGGACATGCATC
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATC
32210934 TACACAGGTG
Statistics
Matches: 146, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
44 30 0.21
45 3 0.02
46 62 0.42
47 30 0.21
48 21 0.14
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTAAG
Found at i:32223624 original size:15 final size:17
Alignment explanation
Indices: 32223599--32223630 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32223589 TTAATGCATG
32223599 ACTTAATTAAA-TGAAA
1 ACTTAATTAAATTGAAA
32223615 ACTT-ATTAAATTGAAA
1 ACTTAATTAAATTGAAA
32223631 TAACACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (17 bp):
ACTTAATTAAATTGAAA
Found at i:32225720 original size:23 final size:26
Alignment explanation
Indices: 32225689--32225737 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
32225679 TGTAAATTAA
32225689 AAAAATATCTC-T-AGA-AATTTTCT
1 AAAAATATCTCTTCAGAGAATTTTCT
*
32225712 AAAATTATCTCTTCAGAGAATTTTCT
1 AAAAATATCTCTTCAGAGAATTTTCT
32225738 CTCTACAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 1 0.05
25 3 0.14
26 8 0.36
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (26 bp):
AAAAATATCTCTTCAGAGAATTTTCT
Found at i:32225986 original size:11 final size:11
Alignment explanation
Indices: 32225970--32226046 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
32225960 AGATAATCAC
32225970 ATTAATATTAA
1 ATTAATATTAA
32225981 ATTAATA--AA
1 ATTAATATTAA
*
32225990 A-TACTATTAA
1 ATTAATATTAA
*
32226000 GATAAATATTAA
1 -ATTAATATTAA
32226012 ATTACAT-TTAA
1 ATTA-ATATTAA
32226023 TATTAAAATATTAA
1 -ATT--AATATTAA
*
32226037 AATAATATTA
1 ATTAATATTA
32226047 TTTTTGGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 2 0.04
11 22 0.42
12 12 0.23
13 4 0.08
14 5 0.10
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (11 bp):
ATTAATATTAA
Found at i:32238010 original size:17 final size:18
Alignment explanation
Indices: 32237985--32238018 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32237975 AAATTCTCTA
*
32237985 TTTACTTTAATTGTTTTT
1 TTTACTTTAATTATTTTT
32238003 TTTA-TTTAATTATTTT
1 TTTACTTTAATTATTTT
32238019 ATAACACGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTACTTTAATTATTTTT
Found at i:32240596 original size:20 final size:20
Alignment explanation
Indices: 32240571--32240611 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32240561 AAATCTCTTA
32240571 TCACATTCTTCTCTTCTTCT
1 TCACATTCTTCTCTTCTTCT
* * *
32240591 TCACATTTTTTTCTTTTTCT
1 TCACATTCTTCTCTTCTTCT
32240611 T
1 T
32240612 TTAATCTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.27, G:0.00, T:0.63
Consensus pattern (20 bp):
TCACATTCTTCTCTTCTTCT
Found at i:32246058 original size:18 final size:20
Alignment explanation
Indices: 32246023--32246059 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32246013 TTAAAGTTGG
32246023 TTTAAATATGTTTGTTAAAA
1 TTTAAATATGTTTGTTAAAA
*
32246043 TTTATATAT-TTT-TTAAA
1 TTTAAATATGTTTGTTAAA
32246060 TTCTGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 3 0.19
20 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
TTTAAATATGTTTGTTAAAA
Found at i:32246113 original size:27 final size:24
Alignment explanation
Indices: 32246083--32246148 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 24
32246073 TGTAATGTAC
32246083 AAAACATTCTTCAAAATAATTTAATTT
1 AAAA-ATT-TTCAAAATAA-TTAATTT
32246110 -AAAATTTT-AAACAT-ATTAATTT
1 AAAAATTTTCAAA-ATAATTAATTT
32246132 AAAATATTTTCAAAATA
1 AAAA-ATTTTCAAAATA
32246149 TTGACAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
22 7 0.21
23 7 0.21
24 11 0.32
25 6 0.18
26 3 0.09
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (24 bp):
AAAAATTTTCAAAATAATTAATTT
Found at i:32247643 original size:24 final size:25
Alignment explanation
Indices: 32247615--32247666 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
32247605 ATAAAAGAAA
32247615 ATTTTTACTAAAAA-CTAATAAATT
1 ATTTTTACTAAAAACCTAATAAATT
*
32247639 ATTTTTACTAAAAACCTAATAATTT
1 ATTTTTACTAAAAACCTAATAAATT
32247664 ATT
1 ATT
32247667 AAAATAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (25 bp):
ATTTTTACTAAAAACCTAATAAATT
Found at i:32252447 original size:59 final size:57
Alignment explanation
Indices: 32252329--32252465 Score: 161
Period size: 59 Copynumber: 2.4 Consensus size: 57
32252319 TTAATTCATA
* *
32252329 TAATAATTATTTTATTAAGAATGTTATTAAATTATATAATATTTTATTAAATTGAATT
1 TAATAATTATTTTATTAAAAATG-TATTAAATTATATAATATTTTATTAAAATGAATT
* **
32252387 TAATAATTATTATATTAAAAATG-ATTAAATTATTTATTTTTATTTTATTAAAAT-ATATT
1 TAATAATTATTTTATTAAAAATGTATTAAATTA--TA-TAATATTTTATTAAAATGA-ATT
*
32252446 TAATAATAATTTTATTAAAA
1 TAATAATTATTTTATTAAAA
32252466 TTTAATAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
56 9 0.13
58 24 0.35
59 35 0.51
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (57 bp):
TAATAATTATTTTATTAAAAATGTATTAAATTATATAATATTTTATTAAAATGAATT
Found at i:32252459 original size:26 final size:25
Alignment explanation
Indices: 32252428--32252479 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
32252418 ATTTATTTTT
*
32252428 ATTTTATTAAAATATATTTAATAATA
1 ATTTTATTAAAATATA-ATAATAATA
*
32252454 ATTTTATTAAAATTTAATAATAATA
1 ATTTTATTAAAATATAATAATAATA
32252479 A
1 A
32252480 CAATAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTTTATTAAAATATAATAATAATA
Found at i:32253559 original size:16 final size:16
Alignment explanation
Indices: 32253538--32253591 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
32253528 TGAATTACTT
*
32253538 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
32253554 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCC
32253570 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
32253586 ATTACA
1 ATTACA
32253592 TTGAACCAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:32259606 original size:22 final size:21
Alignment explanation
Indices: 32259567--32259607 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32259557 GTAAGTTCCA
* *
32259567 TTTTTTCCCCTTCTTTTTGGC
1 TTTTTTCCCCCTCATTTTGGC
32259588 TTTTTTCCCCCTCAATTTTG
1 TTTTTTCCCCCTC-ATTTTG
32259608 TGTATTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.05, C:0.29, G:0.07, T:0.59
Consensus pattern (21 bp):
TTTTTTCCCCCTCATTTTGGC
Found at i:32262966 original size:17 final size:17
Alignment explanation
Indices: 32262912--32262973 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 17
32262902 TGAAAGGTGA
32262912 GAAGTAAAAGTTTAGGG
1 GAAGTAAAAGTTTAGGG
* *
32262929 AGAATATAAAAAGTTTTGGG
1 -GAA-GT-AAAAGTTTAGGG
32262949 GAA-TAAAAGTTTGAGGG
1 GAAGTAAAAGTTT-AGGG
32262966 GAAGTAAA
1 GAAGTAAA
32262974 TTGGGGGAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 8 0.22
17 7 0.19
18 7 0.19
19 4 0.11
20 11 0.30
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (17 bp):
GAAGTAAAAGTTTAGGG
Found at i:32263334 original size:9 final size:9
Alignment explanation
Indices: 32263320--32263365 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
32263310 TATAGTTTGA
32263320 TATTCGAAT
1 TATTCGAAT
32263329 TATTCGAAT
1 TATTCGAAT
*
32263338 TATTCGAGT
1 TATTCGAAT
*
32263347 TATTCGAGT
1 TATTCGAAT
32263356 TATTCGAAT
1 TATTCGAAT
32263365 T
1 T
32263366 TGAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32263431 original size:9 final size:9
Alignment explanation
Indices: 32263417--32263449 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
32263407 ATTCGAGTTG
32263417 ACTCGAATA
1 ACTCGAATA
32263426 ACTCGAATA
1 ACTCGAATA
32263435 ACTCGAATA
1 ACTCGAATA
32263444 ACTCGA
1 ACTCGA
32263450 TTCGTTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.21
Consensus pattern (9 bp):
ACTCGAATA
Found at i:32268592 original size:11 final size:11
Alignment explanation
Indices: 32268576--32268622 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
32268566 ATACGCGTAA
32268576 TTTAAAACAAG
1 TTTAAAACAAG
*
32268587 TTTAAAACACATA
1 TTTAAAACA-A-G
*
32268600 TTTAACACAAG
1 TTTAAAACAAG
32268611 TTTAAAACAAG
1 TTTAAAACAAG
32268622 T
1 T
32268623 GATCCAATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 20 0.67
12 2 0.07
13 8 0.27
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (11 bp):
TTTAAAACAAG
Found at i:32276672 original size:25 final size:25
Alignment explanation
Indices: 32276643--32276696 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
32276633 ATATGTTTTA
32276643 ATTTTAAAAATTCATT-AATAG-TAAC
1 ATTTTAAAAA-T-ATTAAATAGTTAAC
*
32276668 ATTTTAATAATATTAAATAGTTAAC
1 ATTTTAAAAATATTAAATAGTTAAC
32276693 ATTT
1 ATTT
32276697 GCTCATCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 6 0.23
25 17 0.65
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (25 bp):
ATTTTAAAAATATTAAATAGTTAAC
Found at i:32280692 original size:17 final size:17
Alignment explanation
Indices: 32280670--32280708 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
32280660 AACCACATTT
*
32280670 ATTTCTA-AATGTTTCTC
1 ATTTCTATAA-GTTTATC
32280687 ATTTCTATAAGTTTATC
1 ATTTCTATAAGTTTATC
32280704 ATTTC
1 ATTTC
32280709 CATCCATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (17 bp):
ATTTCTATAAGTTTATC
Found at i:32286521 original size:37 final size:36
Alignment explanation
Indices: 32286471--32286557 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
32286461 TGCGAAGTCT
32286471 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
32286507 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
32286544 TCACCCGGAACATA
1 T-ACCCGG-ACATA
32286558 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:32286696 original size:49 final size:49
Alignment explanation
Indices: 32286626--32286770 Score: 263
Period size: 49 Copynumber: 3.0 Consensus size: 49
32286616 TTTGCCACAT
* * *
32286626 ATATATATACACTTTCGCATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
32286675 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
32286724 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
32286771 TCACATCGGC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 93 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:32286777 original size:24 final size:24
Alignment explanation
Indices: 32286747--32286800 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
32286737 TTCACATTCA
32286747 TCACATCGGCCATTAGGCCTTATC
1 TCACATCGGCCATTAGGCCTTATC
32286771 TCACATCGGCCATTAGGCCTTATC
1 TCACATCGGCCATTAGGCCTTATC
*
32286795 ACACAT
1 TCACAT
32286801 ATACACACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (24 bp):
TCACATCGGCCATTAGGCCTTATC
Found at i:32286783 original size:73 final size:73
Alignment explanation
Indices: 32286698--32286849 Score: 286
Period size: 73 Copynumber: 2.1 Consensus size: 73
32286688 TTCACATTCA
*
32286698 TCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
32286763 GCCTTATC
66 GCCTTATC
32286771 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
32286836 GCCTTATC
66 GCCTTATC
*
32286844 ACACAT
1 TCACAT
32286850 ATACACACTT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (73 bp):
TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATC
Found at i:32286815 original size:122 final size:122
Alignment explanation
Indices: 32286649--32286892 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
32286639 TTCGCATTCA
* *
32286649 TCACGTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
*
32286714 GCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
32286771 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
32286836 GCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
32286893 ACATATATAC
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (122 bp):
TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:32286825 original size:49 final size:49
Alignment explanation
Indices: 32286771--32286903 Score: 257
Period size: 49 Copynumber: 2.7 Consensus size: 49
32286761 AGGCCTTATC
32286771 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCA
32286820 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCA
*
32286869 TCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATCGGCCATTAGGCCTTATCACACATATACA
32286904 TCTCATACAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 83 1.00
ACGTcount: A:0.31, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
TCACATCGGCCATTAGGCCTTATCACACATATACACACTTTCACATTCA
Found at i:32290295 original size:14 final size:14
Alignment explanation
Indices: 32290276--32290320 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
32290266 AACTCATCTT
*
32290276 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
32290290 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
32290303 AATTTAATTTAATG
1 AGTTTAATTTAATG
32290317 AGTT
1 AGTT
32290321 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:32291334 original size:29 final size:28
Alignment explanation
Indices: 32291296--32291354 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 28
32291286 ATAACCAAAC
*
32291296 CTACAAAACTTTATATCCATAAACCCAT
1 CTACAAAACTTCATATCCATAAACCCAT
32291324 CTACATAAACTTCATATCCATAAACCCAT
1 CTACA-AAACTTCATATCCATAAACCCAT
32291353 CT
1 CT
32291355 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.29
Consensus pattern (28 bp):
CTACAAAACTTCATATCCATAAACCCAT
Found at i:32291347 original size:15 final size:15
Alignment explanation
Indices: 32291301--32291348 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
32291291 CAAACCTACA
*
32291301 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
32291316 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
32291330 AAACTTCATATCCAT
1 AAACTTCATATCCAT
32291345 AAAC
1 AAAC
32291349 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:32292591 original size:30 final size:29
Alignment explanation
Indices: 32292499--32292594 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 29
32292489 AATAATAAAA
* *
32292499 TTAAAAATATATCAAAATAAA-AAAATTT
1 TTAAAAATATATAAAAATAAATAAAAATT
* **
32292527 ATTACAAAA-A-ATAATAATGTATAAAAA-T
1 -TTA-AAAATATATAAAAATAAATAAAAATT
32292555 TT-AAAATATATAAAAATAAATAAATAATT
1 TTAAAAATATATAAAAATAAATAAA-AATT
32292584 TTAAAAATATA
1 TTAAAAATATA
32292595 ATAATTTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
25 4 0.08
26 1 0.02
27 14 0.27
28 10 0.19
29 11 0.21
30 12 0.23
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (29 bp):
TTAAAAATATATAAAAATAAATAAAAATT
Found at i:32292601 original size:17 final size:18
Alignment explanation
Indices: 32292495--32292599 Score: 63
Period size: 20 Copynumber: 5.7 Consensus size: 18
32292485 GTAAAATAAT
* *
32292495 AAAAT-TAAAAATATATC
1 AAAATATAATAATATATA
* * *
32292512 AAAATAAAAAAATTTATTA
1 AAAATATAATAATATA-TA
* *
32292531 CAAAAAATAATAATGTATA
1 -AAAATATAATAATATATA
*
32292550 AAAATTTAA-AATATATA
1 AAAATATAATAATATATA
*
32292567 AAAATA-AATAAATAATTTTA
1 AAAATATAAT-AAT-A-TATA
32292587 AAAATATAATAAT
1 AAAATATAATAAT
32292600 TTAAAATTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
16 2 0.03
17 17 0.25
18 18 0.26
19 4 0.06
20 24 0.35
21 3 0.04
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATATAATAATATATA
Found at i:32292611 original size:17 final size:17
Alignment explanation
Indices: 32292546--32292625 Score: 64
Period size: 14 Copynumber: 5.0 Consensus size: 17
32292536 AATAATAATG
*
32292546 TATAAAAATTTAAAATA
1 TATAATAATTTAAAATA
*
32292563 TATAA-AA-AT-AAATA
1 TATAATAATTTAAAATA
*
32292577 AATAAT--TTTAAAA-A
1 TATAATAATTTAAAATA
*
32292591 TATAATAATTTAAAATT
1 TATAATAATTTAAAATA
*
32292608 TATATTAATATTAAAATA
1 TATAATAAT-TTAAAATA
32292626 AAATAAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
14 16 0.33
15 4 0.08
16 9 0.18
17 13 0.27
18 7 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TATAATAATTTAAAATA
Found at i:32292624 original size:53 final size:52
Alignment explanation
Indices: 32292442--32292632 Score: 167
Period size: 55 Copynumber: 3.6 Consensus size: 52
32292432 TTAATTTTAA
* *
32292442 AAAATTTAAAAAATATATTAAAATACATAAAT-ATTTCTAAAAAGTAAAATAA--T
1 AAAATTT--AAAATATATTAAAATAAATAAATAATTT-TAAAAA-TATAATAATTT
* * * *
32292495 AAAATTAAAAATATATCAAAATAAA-AAA-ATTTATTACAAAAAATAATAATGTAT
1 AAAATTTAAAATATATTAAAATAAATAAATAATT-TTA-AAAATATAATAAT-T-T
*
32292549 AAAAATTTAAAATATATAAAAATAAATAAATAATTTTAAAAATATAATAATTT
1 -AAAATTTAAAATATATTAAAATAAATAAATAATTTTAAAAATATAATAATTT
* *
32292602 AAAATTTATATTAATATTAAAATAAAATAAA
1 AAAATTTAAAAT-ATATTAAAAT-AAATAAA
32292633 AATCCCTGAA
Statistics
Matches: 113, Mismatches: 13, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
50 13 0.12
51 21 0.19
52 10 0.09
53 16 0.14
54 9 0.08
55 35 0.31
56 6 0.05
57 3 0.03
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (52 bp):
AAAATTTAAAATATATTAAAATAAATAAATAATTTTAAAAATATAATAATTT
Found at i:32293190 original size:20 final size:19
Alignment explanation
Indices: 32293165--32293203 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32293155 TTATTTAATA
*
32293165 TTATATAAATTATATTTATT
1 TTATATAAA-TATAATTATT
*
32293185 TTATATTAATATAATTATT
1 TTATATAAATATAATTATT
32293204 AATTTCTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATATAAATATAATTATT
Found at i:32293219 original size:28 final size:25
Alignment explanation
Indices: 32293150--32293202 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
32293140 GATGGGATTT
*
32293150 TTAT-TTTATTTAATATTATATAAA
1 TTATATTTATTTTATATTATATAAA
32293174 TTATATTTATTTTATATTA-ATATAA
1 TTATATTTATTTTATATTATATA-AA
32293199 TTAT
1 TTAT
32293203 TAATTTCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTATATTTATTTTATATTATATAAA
Found at i:32307086 original size:63 final size:63
Alignment explanation
Indices: 32306987--32307112 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
32306977 CCAATTTTGG
* *
32306987 GTTATTACAGCCATCTTGTATGGAGCAATAGAGATAGGCATCGTTCCCGGTACTAGCTCAATA
1 GTTATTACAGCCATCCTGTATGGAGCAATAGAGATAGGCATCATTCCCGGTACTAGCTCAATA
**
32307050 GTTATTACAGCCATCCTGTATGGAGTGATAGAGATAGGCATCATTCCCGGTACTAGCTCAATA
1 GTTATTACAGCCATCCTGTATGGAGCAATAGAGATAGGCATCATTCCCGGTACTAGCTCAATA
32307113 CCAAACTCCA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (63 bp):
GTTATTACAGCCATCCTGTATGGAGCAATAGAGATAGGCATCATTCCCGGTACTAGCTCAATA
Found at i:32308666 original size:27 final size:27
Alignment explanation
Indices: 32308635--32308688 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32308625 AACTCTTCAT
32308635 CCCCATATTTCCTAAGTTTGTCAACCG
1 CCCCATATTTCCTAAGTTTGTCAACCG
32308662 CCCCATATTTCCTAAGTTTGTCAACCG
1 CCCCATATTTCCTAAGTTTGTCAACCG
32308689 GAGCCTTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (27 bp):
CCCCATATTTCCTAAGTTTGTCAACCG
Found at i:32312264 original size:23 final size:22
Alignment explanation
Indices: 32312238--32312281 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32312228 AAATGGTTAT
32312238 ATGTTAGGCATTAT-GTTTGATGG
1 ATGTTAGG-ATT-TGGTTTGATGG
*
32312261 ATGTTTGGATTTGGTTTGATG
1 ATGTTAGGATTTGGTTTGATG
32312282 CATAATATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (22 bp):
ATGTTAGGATTTGGTTTGATGG
Found at i:32313156 original size:25 final size:25
Alignment explanation
Indices: 32313127--32313189 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
32313117 AATAATATGC
32313127 CACAAAGGCTTCT-CAAAGAGTTC-T
1 CACAAAGGCTT-TACAAAGAGTTCGT
* *
32313151 CTACAAGGGCTTTACAGAGAGTTCGT
1 C-ACAAAGGCTTTACAAAGAGTTCGT
*
32313177 CACAAAGACTTTA
1 CACAAAGGCTTTA
32313190 GATAAAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
24 2 0.06
25 28 0.88
26 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (25 bp):
CACAAAGGCTTTACAAAGAGTTCGT
Found at i:32320468 original size:21 final size:22
Alignment explanation
Indices: 32320439--32320484 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
32320429 TGTTTTCAAT
32320439 TTTCACAAAAAGTATCGATACC
1 TTTCACAAAAAGTATCGATACC
*
32320461 TTTC-CAAAAAGTATCGATTCC
1 TTTCACAAAAAGTATCGATACC
32320482 TTT
1 TTT
32320485 ACCAGGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.35
Consensus pattern (22 bp):
TTTCACAAAAAGTATCGATACC
Found at i:32322884 original size:265 final size:265
Alignment explanation
Indices: 32322542--32323071 Score: 934
Period size: 265 Copynumber: 2.0 Consensus size: 265
32322532 GCTTTGAGTC
* *
32322542 AGAAATCATTCTTTGTTTTAAGAGCTTTAAATACTCGTTTGATGCTTGTTGATGATGGTTATATT
1 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGATGGTTATATT
* *
32322607 TTAGCTGAACTAAAAACTAAACCGACGTTTCTGCAACAAATCTATGAAGCTCAGAAAACTAATCT
66 TTAGCTGAACTAAAAACTAAACCAACGTTTCTACAACAAATCTATGAAGCTCAGAAAACTAATCT
* * *
32322672 CGAGTTTATTGCTAAACAAGGATAGATTGAAAAGTTATCAGATTTAGATTTTCACATTGGTACAG
131 CGAGTTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
32322737 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCAAAGAATTCTTAAGTTAAGTAGAACATT
196 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCAAAGAATTCTTAAGTTAAGTAGAACATT
32322802 ATGCG
261 ATGCG
32322807 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGATGGTTATATT
1 AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGATGGTTATATT
* * * *
32322872 TTAGCTGAACTAAAAACTAAACCAATGTTTCTACAACAAATCTGTGAGGCTCAGAAAACTGATCT
66 TTAGCTGAACTAAAAACTAAACCAACGTTTCTACAACAAATCTATGAAGCTCAGAAAACTAATCT
*
32322937 CGAGTTTATTGCTAAACAAGAATAGATTGAAAAGTCATTAGATTCAGATTTTCACATTGGTACAG
131 CGAGTTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
* *
32323002 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCGAAGAATTCTTATGTTAAGTAGAACATT
196 ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCAAAGAATTCTTAAGTTAAGTAGAACATT
32323067 ATGCG
261 ATGCG
32323072 GGAAGCTCAT
Statistics
Matches: 251, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
265 251 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (265 bp):
AGAAATCATTATTTGTTTTAAGAGCTTTAAATACTCGTTTGACGCTTGTTGATGATGGTTATATT
TTAGCTGAACTAAAAACTAAACCAACGTTTCTACAACAAATCTATGAAGCTCAGAAAACTAATCT
CGAGTTTATTGCTAAACAAGAATAGATTGAAAAGTCATCAGATTCAGATTTTCACATTGGTACAG
ATGATAGTTTGTATTTCCGGAACAAAATATGTGTTTCAAAGAATTCTTAAGTTAAGTAGAACATT
ATGCG
Found at i:32325128 original size:29 final size:29
Alignment explanation
Indices: 32325095--32325156 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
32325085 TTAAGATCAT
32325095 TTGTATGCTCTTTTAAAAGTTAGTAATGG
1 TTGTATGCTCTTTTAAAAGTTAGTAATGG
*
32325124 TTGTATGCTCTTTTAGAAGTTAGTAATGG
1 TTGTATGCTCTTTTAAAAGTTAGTAATGG
32325153 TTGT
1 TTGT
32325157 TTTGCTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.24, C:0.06, G:0.23, T:0.47
Consensus pattern (29 bp):
TTGTATGCTCTTTTAAAAGTTAGTAATGG
Found at i:32327436 original size:17 final size:17
Alignment explanation
Indices: 32327414--32327446 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32327404 CACTAACATT
32327414 AAAATGCAATGAAAATA
1 AAAATGCAATGAAAATA
32327431 AAAATGCAATGAAAAT
1 AAAATGCAATGAAAAT
32327447 GTGCACTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATGCAATGAAAATA
Found at i:32330549 original size:100 final size:100
Alignment explanation
Indices: 32330372--32330559 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
32330362 TATTGTGAGG
32330372 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
32330437 AAATGCAAGCTACTATGCGTACCCGAAAACTATGA
66 AAATGCAAGCTACTATGCGTACCCGAAAACTATGA
*
32330472 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATTGGTCGCATGTGTAGTAC
* *
32330536 TAAGTGCAGGCTACTATGCGTACC
65 TAAATGCAAGCTACTATGCGTACC
32330560 AGATCGCTTC
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 1 0.01
100 83 0.99
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
AAATGCAAGCTACTATGCGTACCCGAAAACTATGA
Found at i:32330559 original size:49 final size:49
Alignment explanation
Indices: 32330377--32330563 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
32330367 TGAGGTCACG
*
32330377 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAATTGGTCGCA
* * * * * * * *
32330426 TGTGTAGTACTAAATGCAAGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* *
32330477 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
32330526 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
32330564 CGCTTCGGCT
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 74 0.64
50 3 0.03
51 38 0.33
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:32338611 original size:19 final size:19
Alignment explanation
Indices: 32338587--32338623 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32338577 ATAATAGAGA
* *
32338587 GTGGTTGGTTGATTTCCAT
1 GTGGTTGATTGAATTCCAT
32338606 GTGGTTGATTGAATTCCA
1 GTGGTTGATTGAATTCCA
32338624 AATTAAGCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.11, G:0.30, T:0.43
Consensus pattern (19 bp):
GTGGTTGATTGAATTCCAT
Found at i:32339740 original size:20 final size:20
Alignment explanation
Indices: 32339689--32339741 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
32339679 GAGGCAATGC
* *
32339689 ACACGCCCGTGTGCTTTGGG
1 ACACACCCGTGTGCTTTAGG
*
32339709 ACACTCCCGTGTGCTTTAGG
1 ACACACCCGTGTGCTTTAGG
*
32339729 ACACACCTGTGTG
1 ACACACCCGTGTG
32339742 GAATTAATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.26
Consensus pattern (20 bp):
ACACACCCGTGTGCTTTAGG
Found at i:32346856 original size:17 final size:17
Alignment explanation
Indices: 32346830--32346866 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
32346820 TCAATTTCCC
32346830 TTCAGAAGTTTTGGGTT
1 TTCAGAAGTTTTGGGTT
*
32346847 TTCAGGAGTTTTGGGTT
1 TTCAGAAGTTTTGGGTT
32346864 TTC
1 TTC
32346867 TTTATGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.30, T:0.49
Consensus pattern (17 bp):
TTCAGAAGTTTTGGGTT
Found at i:32352343 original size:47 final size:46
Alignment explanation
Indices: 32352274--32352543 Score: 235
Period size: 47 Copynumber: 5.8 Consensus size: 46
32352264 GGTGAGGTGC
* *
32352274 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCAAGT
* * *
32352321 CGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTC-AAGT
* * * *
32352369 CGATGCATGTCCCAGACATGTCTTACACTTGCTTA-CGTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTC-AAGT
* * * *
32352415 CGATGCATGTCCTAGACATGTCTTACACTAGC-CCTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAA-GT
* * ***
32352461 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCAT-CTCAAGT
**
32352509 CGATGCATGTCCCAGACATGTCTTATGCTAGCTCA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCA
32352544 CACACGAATG
Statistics
Matches: 185, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 75 0.41
47 79 0.43
48 28 0.15
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAAGT
Found at i:32352467 original size:140 final size:141
Alignment explanation
Indices: 32352274--32352533 Score: 375
Period size: 140 Copynumber: 1.9 Consensus size: 141
32352264 GGTGAGGTGC
* *
32352274 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
*
32352339 ATGGTCTTACACTAACTATCAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTT
66 ATGGTCTTACACTAACTATCATAAT-GTAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTT
32352403 ACGTCTCGAGGT
130 ACGTCTCGAGGT
* *
32352415 CGATG-CATGTCCTAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAG
** * * *
32352477 ACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACATGTCTTA
64 ACATGGTCTTACACTAACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTA
32352534 TGCTAGCTCA
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
138 2 0.02
139 18 0.17
140 80 0.75
141 6 0.06
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTTGCTTA
CGTCTCGAGGT
Found at i:32352540 original size:94 final size:92
Alignment explanation
Indices: 32352271--32352533 Score: 293
Period size: 94 Copynumber: 2.8 Consensus size: 92
32352261 TAGGGTGAGG
* * *
32352271 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGG--CTCATATCTCAAGTCGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT--GGTCGATG-CATGTCC
* * *
32352334 CAGACATGGTCTTACACTAACTATCATCTCG
63 CAGACAT-GTCTTACACTAGCCATCATCTCA
* * * *
32352365 TAGCCGATG-CATGTCCCAGACAT-GTCTTACACTTGCT-TACGTCTCGAGGTCGATGCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAT-GTGGTCGATGCATGTCC
* * *
32352427 TAGACATGTCTTACACTAGCCCTCGTCTCAA
63 CAGACATGTCTTACACTAGCCATCATCTC-A
32352458 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGTCGATGCATGTCCCA
32352523 GACATGTCTTA
65 GACATGTCTTA
32352534 TGCTAGCTCA
Statistics
Matches: 141, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
92 25 0.18
93 39 0.28
94 65 0.46
95 12 0.09
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGTCGATGCATGTCCCAG
ACATGTCTTACACTAGCCATCATCTCA
Found at i:32358591 original size:47 final size:47
Alignment explanation
Indices: 32358521--32358684 Score: 131
Period size: 46 Copynumber: 3.5 Consensus size: 47
32358511 GTGCCTGTAC
* * * * *
32358521 CATGTCCTAGACACGGTCTTACACTGTCTCAT-ATCTC-AAGTCAATG
1 CATGTCCCAGACATGGTCTTACACTGACT-ATCATCACGAAGCCAATG
* * *
32358567 CTATGTCCCAGACATGGTCTTACACTAACTATCATCACGTAGCCGATG
1 C-ATGTCCCAGACATGGTCTTACACTGACTATCATCACGAAGCCAATG
* * * * * *
32358615 CATGTCCCAGACAT-GTCTTACACTG-GTTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACTAT-CATCACGAAGCCAATG
*
32358661 CATGTCCTAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
32358685 AGCCTTCGTC
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 48 0.49
47 41 0.42
48 7 0.07
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGACTATCATCACGAAGCCAATG
Found at i:32358658 original size:46 final size:45
Alignment explanation
Indices: 32358608--32358774 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
32358598 TCATCACGTA
* * *
32358608 GCCGATGCATGTCCCAGACATGTCTTACACTGGTTTACGTCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTT-CGTCTCAAG
* *
32358654 GCCGATGCATGTCCTAGACATGTCTTACACTAGCCTTCGTCTCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACT-GGCTTCGTCTCAAG
* *
32358700 GCCGGTGCCATTTCCTAGACATGGTCTTACACTGGC-TC-TCAT-AATTG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTCGTC-TCAA--G
32358747 GCCGATGCATGTCCTAGACATGTCTTAC
1 GCCGATGCATGTCCTAGACATGTCTTAC
32358775 GCTAGCTCAC
Statistics
Matches: 104, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 11 0.11
46 59 0.57
47 24 0.23
48 10 0.10
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:32366500 original size:42 final size:42
Alignment explanation
Indices: 32366441--32366559 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
32366431 AGGTTATGTG
32366441 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
* * * * * *
32366483 TGATTTCATGTAAGACCATGTTTGGGACATGGCATTGATACG
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
* **
32366525 GGACATCGTGTAAGACCATATCTGGGATATGGCAT
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCAT
32366560 TGGCATCTTA
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
Found at i:32366879 original size:196 final size:196
Alignment explanation
Indices: 32366545--32366928 Score: 705
Period size: 196 Copynumber: 2.0 Consensus size: 196
32366535 TAAGACCATA
* **
32366545 TCTGGGATATGGCATTGGCATCTTACTATGTGTACAAGAATTCTTGGGTATCCTTTAGCATTCCA
1 TCTGGGAAATGGCATTGGCATCTTACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCA
* *
32366610 AGTGGTTCAACGGGTAATTTAAAGGTTATGTTAATGATGTGAAAGGCTATGATTACGTTATGAAG
66 AGTGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACATTATGAAG
32366675 TGGTACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTA
131 TGGTACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTA
32366740 C
196 C
*
32366741 TCTGGGAAATGGCATTGGCATCTTACTATGTGTACAAGATTTCCCGGGTATCCTTTAGCATTCCA
1 TCTGGGAAATGGCATTGGCATCTTACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCA
32366806 AGTGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACATTATGAAG
66 AGTGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACATTATGAAG
*
32366871 TGGTACAGGTATGTATGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATC
131 TGGTACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATC
32366929 GATAAGGATG
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 181 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (196 bp):
TCTGGGAAATGGCATTGGCATCTTACTATGTGTACAAGAATTCCCGGGTATCCTTTAGCATTCCA
AGTGGTTCAACGGGTAATTTAAAGATTATGTTAATGATGTGAAAGGCTATGATTACATTATGAAG
TGGTACAGGTATGTACGCAAAACTCATTGGAAATGAGCTCGATTTATGATGCATTATCATGTGTA
C
Found at i:32376475 original size:33 final size:36
Alignment explanation
Indices: 32376408--32376480 Score: 116
Period size: 33 Copynumber: 2.1 Consensus size: 36
32376398 AGCACATTAA
*
32376408 AAATGTTATATTAAAAAACACTACCATAAATATAAT
1 AAATGTTATATTAAAAAACACTACAATAAATATAAT
32376444 AAATGTT-TATTAAAAAACAC-A-AATAAATATAAT
1 AAATGTTATATTAAAAAACACTACAATAAATATAAT
32376477 AAAT
1 AAAT
32376481 ATTTTATTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 15 0.42
34 1 0.03
35 13 0.36
36 7 0.19
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (36 bp):
AAATGTTATATTAAAAAACACTACAATAAATATAAT
Found at i:32376663 original size:23 final size:23
Alignment explanation
Indices: 32376605--32376663 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
32376595 TTAGTGATTC
*
32376605 AATATAAATATAAATAATAATTAT
1 AATAT-AATATATATAATAATTAT
* * *
32376629 TATTTAACATATATAATTAA-TAT
1 AATATAATATATATAA-TAATTAT
32376652 AATATAATATAT
1 AATATAATATAT
32376664 TCGGGTCGAG
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AATATAATATATATAATAATTAT
Found at i:32383128 original size:20 final size:20
Alignment explanation
Indices: 32383103--32383141 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32383093 AAAACTGACT
*
32383103 TTTAGCGGCGTTTTTAGGCC
1 TTTAGCGGCGCTTTTAGGCC
32383123 TTTAGCGGCGCTTTTAGGC
1 TTTAGCGGCGCTTTTAGGC
32383142 GCCGTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.21, G:0.31, T:0.38
Consensus pattern (20 bp):
TTTAGCGGCGCTTTTAGGCC
Found at i:32383342 original size:35 final size:34
Alignment explanation
Indices: 32383275--32383342 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 34
32383265 CGGCGCTTTA
* * *
32383275 CCCACAAGCGCCGCTAAAGGTCATGGCTTTTAGT
1 CCCACAAACGCCGCTAAAAGTCATGGCCTTTAGT
*
32383309 CCCACAAACGCCGCTAAAAAGTCATGTCCTTTAG
1 CCCACAAACGCCGCT-AAAAGTCATGGCCTTTAG
32383343 CGGCGCTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (34 bp):
CCCACAAACGCCGCTAAAAGTCATGGCCTTTAGT
Found at i:32383389 original size:43 final size:43
Alignment explanation
Indices: 32383308--32383419 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
32383298 TGGCTTTTAG
* *
32383308 TCCCACAAACGCCGCTAAAAAGTCATGTCCTTTAGCGGCGCTTT
1 TCCCACAAACGCCGCT-AAAAGTCATGGCCTTTAGCGGCACTTT
* *
32383352 TTCCACAAACGCCGCTAAAGGTCATGGCCTTTAGCGGCACTTT
1 TCCCACAAACGCCGCTAAAAGTCATGGCCTTTAGCGGCACTTT
*
32383395 TCCCACAAACGCCGCTAAATGTCAT
1 TCCCACAAACGCCGCTAAAAGTCAT
32383420 AAATTCAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 47 0.76
44 15 0.24
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (43 bp):
TCCCACAAACGCCGCTAAAAGTCATGGCCTTTAGCGGCACTTT
Found at i:32383495 original size:26 final size:23
Alignment explanation
Indices: 32383450--32383498 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
32383440 AAATATTATA
32383450 AATGTCATGAAAAATATAAAAAT
1 AATGTCATGAAAAATATAAAAAT
32383473 AATGTCCATGATATAAATATAAAAAT
1 AATGT-CATGA-A-AAATATAAAAAT
32383499 TTTCTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 5 0.22
25 1 0.04
26 12 0.52
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (23 bp):
AATGTCATGAAAAATATAAAAAT
Found at i:32383717 original size:18 final size:19
Alignment explanation
Indices: 32383680--32383720 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
32383670 ATTTAGAATC
32383680 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
32383699 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
32383717 AAAA
1 AAAA
32383721 TATTAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:32383722 original size:31 final size:32
Alignment explanation
Indices: 32383646--32383719 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
32383636 TCAAATTATC
*
32383646 TTAAATATTAAAATAAA-AATAAAAATTTAGAA
1 TTAAATA-TAAAATAAATAATAAAAATCTAGAA
*
32383678 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAATAATAAAAATCTAGAA
32383708 TTAAATATAAAA
1 TTAAATATAAAA
32383720 ATATTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (32 bp):
TTAAATATAAAATAAATAATAAAAATCTAGAA
Found at i:32385744 original size:16 final size:17
Alignment explanation
Indices: 32385723--32385756 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32385713 CAGCAAGACC
32385723 CATGT-AAAATAAATTA
1 CATGTAAAAATAAATTA
32385739 CATGTAAAAATAAATTA
1 CATGTAAAAATAAATTA
32385756 C
1 C
32385757 CTCCTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (17 bp):
CATGTAAAAATAAATTA
Found at i:32389551 original size:18 final size:19
Alignment explanation
Indices: 32389514--32389552 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32389504 AAATCATATT
32389514 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
32389533 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
32389551 TA
1 TA
32389553 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:32390164 original size:24 final size:24
Alignment explanation
Indices: 32390136--32390184 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
32390126 CCAAAATAAC
*
32390136 AATTAATTTTTATATAAACTTTTA
1 AATTAAGTTTTATATAAACTTTTA
32390160 AATTAAGTTTTATATAAACTTTTA
1 AATTAAGTTTTATATAAACTTTTA
32390184 A
1 A
32390185 CAAATATACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTAAGTTTTATATAAACTTTTA
Found at i:32390720 original size:17 final size:18
Alignment explanation
Indices: 32390695--32390728 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32390685 GGGTTATAGT
*
32390695 TTAGTGTTTAG-GGTTTG
1 TTAGGGTTTAGCGGTTTG
32390712 TTAGGGTTTAGCGGTTT
1 TTAGGGTTTAGCGGTTT
32390729 ACTATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.03, G:0.35, T:0.50
Consensus pattern (18 bp):
TTAGGGTTTAGCGGTTTG
Found at i:32390893 original size:41 final size:40
Alignment explanation
Indices: 32390798--32390921 Score: 178
Period size: 41 Copynumber: 3.1 Consensus size: 40
32390788 GTTATATTAC
*
32390798 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAAT-ATCTGGT
1 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
**
32390838 TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
**
32390879 TTTTAGTGGCGTTTTACCAAAATTGCCGCTAATGCTCTGT
1 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
32390919 TTT
1 TTT
32390922 CCTGTAGTGA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
40 36 0.48
41 39 0.52
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (40 bp):
TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:32395785 original size:25 final size:24
Alignment explanation
Indices: 32395725--32395785 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
32395715 TGTCATATCA
* *
32395725 ATAAATAATTTTAAAATATAAAAAT
1 ATAAA-AAATTTAAAATAAAAAAAT
*
32395750 A-AAAATTATTTAAAATTAAAAAAAT
1 ATAAAA-AATTTAAAA-TAAAAAAAT
32395775 ATAAAAAATTT
1 ATAAAAAATTT
32395786 TATAAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 1 0.03
24 10 0.34
25 14 0.48
26 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAAAAAATTTAAAATAAAAAAAT
Found at i:32401178 original size:25 final size:25
Alignment explanation
Indices: 32401142--32401190 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
32401132 TAAAAAATGA
*
32401142 GTATGCTCTTCGATAGCCTTTTTTC
1 GTATGCTCTTCGATAGCATTTTTTC
* *
32401167 GTATGCTTTTCGGTAGCATTTTTT
1 GTATGCTCTTCGATAGCATTTTTT
32401191 TTTCTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.51
Consensus pattern (25 bp):
GTATGCTCTTCGATAGCATTTTTTC
Found at i:32405798 original size:46 final size:46
Alignment explanation
Indices: 32405731--32405822 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
32405721 TTGGCTAAAA
32405731 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
*
32405777 GTCTTTGATACGAACAATATATGGAGCTAGTTTGGTTTTCTCTTTC
1 GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
32405823 AGAAGAGCTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.43
Consensus pattern (46 bp):
GTCTTTGATACGAACAATATATGAAGCTAGTTTGGTTTTCTCTTTC
Found at i:32413275 original size:49 final size:49
Alignment explanation
Indices: 32413203--32413302 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
32413193 TAAGTGTGAG
32413203 GGAAGGGTTCAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAAT
1 GGAAGGGTTCAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAAT
*
32413252 GGAAGGGTTCCAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAAT
1 GGAAGGGTTCAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAAT
32413301 GG
1 GG
32413303 GTTAATAAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (49 bp):
GGAAGGGTTCAAAGGCTGAATGATTAATAATGTAGTCAAAATTAAGAAT
Found at i:32424870 original size:43 final size:43
Alignment explanation
Indices: 32424804--32424905 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
32424794 GCTGGTATTA
32424804 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
1 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
* *
32424847 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
32424890 TATTTGGGCCTTCGTG
1 TATTTGGGCCTTCGTG
32424906 TGACACCCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.10, C:0.22, G:0.33, T:0.35
Consensus pattern (43 bp):
TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATG
Found at i:32427328 original size:49 final size:49
Alignment explanation
Indices: 32427273--32428270 Score: 1773
Period size: 49 Copynumber: 20.4 Consensus size: 49
32427263 TATTAAAATT
* *
32427273 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32427322 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32427371 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32427420 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32427469 TGTGAAAGTGTATGTATATGTGATAAGG-CTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32427517 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32427566 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32427615 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32427664 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32427713 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32427762 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32427811 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32427860 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32427909 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32427958 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32428007 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32428056 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32428105 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32428154 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32428203 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32428252 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
32428271 ATGTGGTAAA
Statistics
Matches: 906, Mismatches: 42, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
48 45 0.05
49 861 0.95
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:32427391 original size:27 final size:27
Alignment explanation
Indices: 32427361--32427443 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32427351 CTAATGGCCG
32427361 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32427388 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427411 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427437 ATGTGAT
1 ATGTGAT
32427444 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32427539 original size:27 final size:27
Alignment explanation
Indices: 32427507--32427589 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32427497 CTAATGGCCG
32427507 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32427534 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427557 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427583 ATGTGAT
1 ATGTGAT
32427590 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32427684 original size:27 final size:27
Alignment explanation
Indices: 32427654--32427736 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32427644 CTAATGGCCG
32427654 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32427681 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427704 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427730 ATGTGAT
1 ATGTGAT
32427737 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32427929 original size:27 final size:27
Alignment explanation
Indices: 32427899--32427981 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32427889 CTAATGGCCG
32427899 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32427926 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427949 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32427975 ATGTGAT
1 ATGTGAT
32427982 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32428076 original size:27 final size:27
Alignment explanation
Indices: 32428046--32428128 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
32428036 CTAATGGCCG
32428046 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
32428073 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
32428095 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32428122 ATGTGAT
1 ATGTGAT
32428129 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32430321 original size:40 final size:40
Alignment explanation
Indices: 32430266--32430777 Score: 952
Period size: 40 Copynumber: 12.8 Consensus size: 40
32430256 GAGAATTGAG
*
32430266 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430306 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430346 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430386 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430426 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430466 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430506 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32430546 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32430586 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32430626 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32430666 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32430706 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
32430746 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
32430778 ATCATGCTGG
Statistics
Matches: 466, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 466 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32434633 original size:49 final size:49
Alignment explanation
Indices: 32434578--32435575 Score: 1773
Period size: 49 Copynumber: 20.4 Consensus size: 49
32434568 TATTAAAATT
* *
32434578 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32434627 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32434676 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32434725 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32434774 TGTGAAAGTGTATGTATATGTGATAAGG-CTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32434822 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32434871 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32434920 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32434969 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435018 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32435067 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435116 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32435165 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32435214 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435263 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32435312 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435361 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32435410 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32435459 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435508 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32435557 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
32435576 ATGTGGTAAA
Statistics
Matches: 906, Mismatches: 42, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
48 45 0.05
49 861 0.95
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:32434696 original size:27 final size:27
Alignment explanation
Indices: 32434666--32434748 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32434656 CTAATGGCCG
32434666 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32434693 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32434716 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32434742 ATGTGAT
1 ATGTGAT
32434749 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32434844 original size:27 final size:27
Alignment explanation
Indices: 32434812--32434894 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32434802 CTAATGGCCG
32434812 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32434839 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32434862 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32434888 ATGTGAT
1 ATGTGAT
32434895 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32434989 original size:27 final size:27
Alignment explanation
Indices: 32434959--32435041 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32434949 CTAATGGCCG
32434959 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32434986 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32435009 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32435035 ATGTGAT
1 ATGTGAT
32435042 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32435234 original size:27 final size:27
Alignment explanation
Indices: 32435204--32435286 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32435194 CTAATGGCCG
32435204 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32435231 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32435254 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32435280 ATGTGAT
1 ATGTGAT
32435287 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32435381 original size:27 final size:27
Alignment explanation
Indices: 32435351--32435433 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
32435341 CTAATGGCCG
32435351 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
32435378 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
32435400 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32435427 ATGTGAT
1 ATGTGAT
32435434 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32437625 original size:40 final size:40
Alignment explanation
Indices: 32437570--32438041 Score: 872
Period size: 40 Copynumber: 11.8 Consensus size: 40
32437560 GAGAATTGAG
*
32437570 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437610 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437650 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437690 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437730 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437770 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32437810 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32437850 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32437890 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32437930 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32437970 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
32438010 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
32438042 ATCATGCTGG
Statistics
Matches: 426, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 426 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32441898 original size:49 final size:49
Alignment explanation
Indices: 32441843--32442791 Score: 1684
Period size: 49 Copynumber: 19.4 Consensus size: 49
32441833 TATTAAAATT
* *
32441843 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32441892 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32441941 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32441990 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442038 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32442087 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442136 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442185 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442234 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442283 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442332 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442381 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32442430 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442479 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442528 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442577 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32442626 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
32442675 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442724 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
32442773 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
32442792 ATGTGGTAAA
Statistics
Matches: 859, Mismatches: 40, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
48 46 0.05
49 813 0.95
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:32441961 original size:27 final size:27
Alignment explanation
Indices: 32441931--32442013 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32441921 CTAATGGCCG
32441931 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32441958 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32441981 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442007 ATGTGAT
1 ATGTGAT
32442014 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32442107 original size:27 final size:27
Alignment explanation
Indices: 32442077--32442159 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32442067 CTAATGGCCG
32442077 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32442104 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442127 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442153 ATGTGAT
1 ATGTGAT
32442160 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32442450 original size:27 final size:27
Alignment explanation
Indices: 32442420--32442502 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
32442410 CTAATGGCCG
32442420 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
32442447 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442470 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442496 ATGTGAT
1 ATGTGAT
32442503 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32442597 original size:27 final size:27
Alignment explanation
Indices: 32442567--32442649 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
32442557 CTAATGGCCG
32442567 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
32442594 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
32442616 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
32442643 ATGTGAT
1 ATGTGAT
32442650 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:32455455 original size:11 final size:11
Alignment explanation
Indices: 32455441--32455467 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32455431 TTAAAAAGGG
32455441 AAAATAAAGCC
1 AAAATAAAGCC
32455452 AAAATAAAGCC
1 AAAATAAAGCC
32455463 AAAAT
1 AAAAT
32455468 TTTGTCTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.15, G:0.07, T:0.11
Consensus pattern (11 bp):
AAAATAAAGCC
Found at i:32457096 original size:37 final size:37
Alignment explanation
Indices: 32457046--32457121 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
32457036 ACTTAGCCAT
*
32457046 TGGAATGGCTAAGGATGTTCAAGTAGTGCATGTATGA
1 TGGAATGGCTAAGGATGTTCAAGTAGTGCATATATGA
32457083 TGGAATGGCTAAGGATGTTCAAGTAGTGCATATATGA
1 TGGAATGGCTAAGGATGTTCAAGTAGTGCATATATGA
32457120 TG
1 TG
32457122 TTAACGTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (37 bp):
TGGAATGGCTAAGGATGTTCAAGTAGTGCATATATGA
Found at i:32466837 original size:24 final size:24
Alignment explanation
Indices: 32466801--32466846 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
32466791 TAAACTAAAA
*
32466801 ACAACTAACAATAAAAATAAAAGT
1 ACAACTAACAATAAAAAGAAAAGT
32466825 ACAACTGAA-AATAAAAAGAAAA
1 ACAACT-AACAATAAAAAGAAAA
32466847 AAAATAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.13
Consensus pattern (24 bp):
ACAACTAACAATAAAAAGAAAAGT
Found at i:32467105 original size:33 final size:33
Alignment explanation
Indices: 32467023--32467106 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
32467013 CCAAATGTAA
*
32467023 CTGCTTAAGGCGATCTATCCACACTGTCTGTTG
1 CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
** * *
32467056 CTATTCAAGGCAATCTATCCACTCTGTCTGTTG
1 CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
*
32467089 CTGCTCAATGCGATCTAT
1 CTGCTCAAGGCGATCTAT
32467107 TCGATCAGAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (33 bp):
CTGCTCAAGGCGATCTATCCACACTGTCTGTTG
Found at i:32468502 original size:20 final size:22
Alignment explanation
Indices: 32468465--32468504 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
32468455 GACTAATAAG
*
32468465 AAACACAATAATAGTAATAATA
1 AAACACAATAATAATAATAATA
32468487 AAACA-AAT-ATAATAATAA
1 AAACACAATAATAATAATAA
32468505 AATTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.68, C:0.07, G:0.03, T:0.23
Consensus pattern (22 bp):
AAACACAATAATAATAATAATA
Found at i:32470501 original size:29 final size:27
Alignment explanation
Indices: 32470467--32470569 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
32470457 TACTCGATCA
*
32470467 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
32470496 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
32470525 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
32470554 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32470570 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:32471908 original size:16 final size:18
Alignment explanation
Indices: 32471874--32471911 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
32471864 CATCCACACA
32471874 TTTTTTTTTCATCATTTTC
1 TTTTTTTTTCA-CATTTTC
32471893 TTTTTTTTTC-CA-TTTC
1 TTTTTTTTTCACATTTTC
32471909 TTT
1 TTT
32471912 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
19 10 0.53
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTTTTCACATTTTC
Found at i:32478233 original size:29 final size:27
Alignment explanation
Indices: 32478199--32478301 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
32478189 TACTCGATCA
*
32478199 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
32478228 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
32478257 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
32478286 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32478302 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Done.