Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 126 of 444
Found at i:32879856 original size:2 final size:2
Alignment explanation
Indices: 32879849--32879875 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32879839 AACTTAAGTG
32879849 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32879876 GTTAGTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32881015 original size:21 final size:21
Alignment explanation
Indices: 32880989--32881031 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32880979 TTCAAGTCTG
32880989 ACTCAGGTTAATAGGGAACTA
1 ACTCAGGTTAATAGGGAACTA
32881010 ACTCAGGTTAATAGGGAACTA
1 ACTCAGGTTAATAGGGAACTA
32881031 A
1 A
32881032 AATGAAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (21 bp):
ACTCAGGTTAATAGGGAACTA
Found at i:32884540 original size:27 final size:27
Alignment explanation
Indices: 32884524--32884774 Score: 312
Period size: 27 Copynumber: 9.3 Consensus size: 27
32884514 CGACTTGTAA
32884524 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32884551 AATTACCATTTTACCCTC-ACTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
32884578 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32884605 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32884632 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
32884659 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32884686 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32884713 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
32884740 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32884767 AATTACCA
1 AATTACCA
32884775 AAATACCCTT
Statistics
Matches: 199, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:32884781 original size:27 final size:27
Alignment explanation
Indices: 32884535--32884863 Score: 102
Period size: 27 Copynumber: 12.2 Consensus size: 27
32884525 ATTACCATTT
* ***
32884535 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
32884562 TACCCTCACTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32884589 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
32884616 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * *****
32884643 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
32884670 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
32884697 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32884724 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
32884751 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
32884778 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
32884805 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
32884832 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
32884859 TACCC
1 TACCC
32884864 CTGGTTTGTA
Statistics
Matches: 248, Mismatches: 52, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:32884790 original size:54 final size:54
Alignment explanation
Indices: 32884524--32884773 Score: 392
Period size: 54 Copynumber: 4.6 Consensus size: 54
32884514 CGACTTGTAA
* * *
32884524 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCACTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
32884578 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
32884632 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
32884686 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
32884740 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
32884774 AAAATACCCT
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 179 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:32884792 original size:81 final size:81
Alignment explanation
Indices: 32884524--32884774 Score: 362
Period size: 81 Copynumber: 3.1 Consensus size: 81
32884514 CGACTTGTAA
*
32884524 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCACTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32884589 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * *
32884605 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
32884668 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
32884686 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32884751 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
32884767 AATTACCA
1 AATTACCA
32884775 AAATACCCTT
Statistics
Matches: 148, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 145 0.98
82 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:32884868 original size:27 final size:27
Alignment explanation
Indices: 32884767--32884916 Score: 201
Period size: 27 Copynumber: 5.6 Consensus size: 27
32884757 CAATTTACAG
32884767 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
32884794 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32884821 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32884848 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32884875 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
32884902 AATTACCGAAATACC
1 AATTACCAAAATACC
32884917 GTTGTAGGGT
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:32884933 original size:81 final size:80
Alignment explanation
Indices: 32884765--32884936 Score: 193
Period size: 81 Copynumber: 2.1 Consensus size: 80
32884755 TTCAATTTAC
* * *
32884765 AGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAA
1 AGAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCAA
**
32884830 AATACCCTTGGTTTA
66 AATACCCTTGGGGTA
* * * * * * *
32884845 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCG
1 -AGAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCA
*
32884910 AAATACCGTTGTAGGGT-
65 AAATACCCTTG--GGGTA
32884927 AGAATTACCA
1 AGAATTACCA
32884937 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 73 0.97
83 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
AGAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCAA
AATACCCTTGGGGTA
Found at i:32884934 original size:54 final size:54
Alignment explanation
Indices: 32884767--32884916 Score: 246
Period size: 54 Copynumber: 2.8 Consensus size: 54
32884757 CAATTTACAG
* *
32884767 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
32884821 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
32884875 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACC
32884917 GTTGTAGGGT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:32888396 original size:27 final size:27
Alignment explanation
Indices: 32888380--32888630 Score: 312
Period size: 27 Copynumber: 9.3 Consensus size: 27
32888370 CGACTTGTAA
32888380 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32888407 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
32888434 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32888461 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32888488 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
32888515 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32888542 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32888569 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
32888596 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32888623 AATTACCA
1 AATTACCA
32888631 AAATACCCTT
Statistics
Matches: 199, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:32888637 original size:27 final size:27
Alignment explanation
Indices: 32888391--32888719 Score: 102
Period size: 27 Copynumber: 12.2 Consensus size: 27
32888381 ATTACCATTT
* ***
32888391 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
32888418 TACCCTCAGTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32888445 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
32888472 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * *****
32888499 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
32888526 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
32888553 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32888580 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
32888607 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
32888634 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
32888661 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
32888688 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
32888715 TACCC
1 TACCC
32888720 CTGGTTTGTA
Statistics
Matches: 248, Mismatches: 52, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:32888646 original size:54 final size:54
Alignment explanation
Indices: 32888380--32888629 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
32888370 CGACTTGTAA
* *
32888380 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
32888434 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
32888488 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
32888542 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
32888596 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
32888630 AAAATACCCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:32888648 original size:81 final size:81
Alignment explanation
Indices: 32888380--32888630 Score: 371
Period size: 81 Copynumber: 3.1 Consensus size: 81
32888370 CGACTTGTAA
32888380 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32888445 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * *
32888461 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
32888524 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
32888542 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32888607 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
32888623 AATTACCA
1 AATTACCA
32888631 AAATACCCTT
Statistics
Matches: 149, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
80 2 0.01
81 145 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:32888724 original size:27 final size:27
Alignment explanation
Indices: 32888623--32888776 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
32888613 CAATTTACAG
32888623 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
32888650 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32888677 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32888704 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32888731 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
32888758 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
32888777 TAGGGTAGAA
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:32888776 original size:81 final size:81
Alignment explanation
Indices: 32888616--32888776 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
32888606 TTACCTTCAA
* * *
32888616 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
32888681 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * *
32888697 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
32888762 ACCGAAATACCCTTG
66 ACCAAAATACCCTTG
32888777 TAGGGTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
ACCAAAATACCCTTGG
Found at i:32888790 original size:54 final size:54
Alignment explanation
Indices: 32888623--32888773 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
32888613 CAATTTACAG
* *
32888623 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
32888677 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
32888731 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
32888774 TTGTAGGGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:32890604 original size:42 final size:42
Alignment explanation
Indices: 32890532--32890650 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
32890522 TTGGGGTGTT
* * * * * *
32890532 ACACGGCTAGGGACATAGGCATGTGCCTAGGCCATGTGAGTC
1 ACACGGCAAAGGACATGGGCGTGTGTCTAGGCCATGTGAGCC
* *
32890574 ATACGAG-AAAGGACATGGGCGTGTGTCTAGGCCGTGTGAGCC
1 ACACG-GCAAAGGACATGGGCGTGTGTCTAGGCCATGTGAGCC
** * *
32890616 ACACGGCCTAGGACATGGACGTGTGTCCAGGCCAT
1 ACACGGCAAAGGACATGGGCGTGTGTCTAGGCCAT
32890651 ATGGCATATG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (42 bp):
ACACGGCAAAGGACATGGGCGTGTGTCTAGGCCATGTGAGCC
Found at i:32892017 original size:28 final size:28
Alignment explanation
Indices: 32891977--32892030 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
32891967 TCTATATCAG
* **
32891977 TCAATATCTTTCAATGTCAATCAATTTA
1 TCAATATCGTTCAATAACAATCAATTTA
32892005 TCAATATCGTTCAATAACAATCAATT
1 TCAATATCGTTCAATAACAATCAATT
32892031 ATTCTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39
Consensus pattern (28 bp):
TCAATATCGTTCAATAACAATCAATTTA
Found at i:32892214 original size:18 final size:18
Alignment explanation
Indices: 32892199--32892340 Score: 140
Period size: 18 Copynumber: 7.9 Consensus size: 18
32892189 CATCAGTATT
*
32892199 AATCAGTTATTCAGTAAT
1 AATCAGTTATTCAGTAAC
*
32892217 AATCATTTATTCAGTAAC
1 AATCAGTTATTCAGTAAC
* * *
32892235 AGTCATTTATTCAGTCAC
1 AATCAGTTATTCAGTAAC
* * *
32892253 AGTCAATTATTCAGTAAT
1 AATCAGTTATTCAGTAAC
32892271 AATCAGTTATTCAGTAAC
1 AATCAGTTATTCAGTAAC
** * * *
32892289 AGCCATTTATTCAGTCAT
1 AATCAGTTATTCAGTAAC
* *
32892307 AATCAATTATTCAGTAGC
1 AATCAGTTATTCAGTAAC
*
32892325 AGTCAGTTATTCAGTA
1 AATCAGTTATTCAGTA
32892341 CCTTTATTTT
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 101 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (18 bp):
AATCAGTTATTCAGTAAC
Found at i:32892231 original size:36 final size:36
Alignment explanation
Indices: 32892191--32892340 Score: 183
Period size: 36 Copynumber: 4.2 Consensus size: 36
32892181 CGGTCAGTCA
* * *
32892191 TCAGTATTAATCAGTTATTCAGTAATAATCATTTAT
1 TCAGTAATAATCAGTTATTCAGTAACAGTCATTTAT
* * * * *
32892227 TCAGTAACAGTCATTTATTCAGTCACAGTCAATTAT
1 TCAGTAATAATCAGTTATTCAGTAACAGTCATTTAT
*
32892263 TCAGTAATAATCAGTTATTCAGTAACAGCCATTTAT
1 TCAGTAATAATCAGTTATTCAGTAACAGTCATTTAT
* * * *
32892299 TCAGTCATAATCAATTATTCAGTAGCAGTCAGTTAT
1 TCAGTAATAATCAGTTATTCAGTAACAGTCATTTAT
32892335 TCAGTA
1 TCAGTA
32892341 CCTTTATTTT
Statistics
Matches: 94, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 94 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (36 bp):
TCAGTAATAATCAGTTATTCAGTAACAGTCATTTAT
Found at i:32892263 original size:54 final size:54
Alignment explanation
Indices: 32892199--32892340 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
32892189 CATCAGTATT
* * *
32892199 AATCAGTTATTCAGTAATAATCATTTATTCAGTAACAGTCATTTATTCAGTCAC
1 AATCAATTATTCAGTAATAATCAGTTATTCAGTAACAGCCATTTATTCAGTCAC
* *
32892253 AGTCAATTATTCAGTAATAATCAGTTATTCAGTAACAGCCATTTATTCAGTCAT
1 AATCAATTATTCAGTAATAATCAGTTATTCAGTAACAGCCATTTATTCAGTCAC
** *
32892307 AATCAATTATTCAGTAGCAGTCAGTTATTCAGTA
1 AATCAATTATTCAGTAATAATCAGTTATTCAGTA
32892341 CCTTTATTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (54 bp):
AATCAATTATTCAGTAATAATCAGTTATTCAGTAACAGCCATTTATTCAGTCAC
Found at i:32892562 original size:45 final size:46
Alignment explanation
Indices: 32892468--32892576 Score: 121
Period size: 45 Copynumber: 2.3 Consensus size: 46
32892458 CAGTAACGGT
* *
32892468 AACAGTAACAGTAGCGGTACACAAAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTA-AGGTA-ACAAAGTACCTCATCAGAACAAATCCGG
* * ** *
32892516 AACAGTAACAGTAAGGT-ACAGAGTACCTCTTCAGAATGAATTCGG
1 AACAGTAACAGTAAGGTAACAAAGTACCTCATCAGAACAAATCCGG
*
32892561 AACAGTAACAATAAGG
1 AACAGTAACAGTAAGG
32892577 CGACACTTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
45 37 0.70
47 3 0.06
48 13 0.25
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.17
Consensus pattern (46 bp):
AACAGTAACAGTAAGGTAACAAAGTACCTCATCAGAACAAATCCGG
Found at i:32892762 original size:17 final size:18
Alignment explanation
Indices: 32892728--32892762 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32892718 TCAACTAATC
*
32892728 ATATATATTTTCAGTTCA
1 ATATATATTTTCAATTCA
32892746 ATATATA-TTTCAATTCA
1 ATATATATTTTCAATTCA
32892763 CTTTACATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (18 bp):
ATATATATTTTCAATTCA
Found at i:32893591 original size:19 final size:20
Alignment explanation
Indices: 32893562--32893602 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
32893552 AATCCTTATT
*
32893562 TTTCTTTTTTCTTTCTTTCC
1 TTTCTTTTTTCCTTCTTTCC
32893582 TTTC-TTTTTCCTTCTTTCC
1 TTTCTTTTTTCCTTCTTTCC
32893601 TT
1 TT
32893603 CCCCTGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTCTTTTTTCCTTCTTTCC
Found at i:32893663 original size:2 final size:2
Alignment explanation
Indices: 32893656--32893697 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
32893646 CTTTTTATTT
32893656 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32893698 ATCTATTAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32893742 original size:15 final size:16
Alignment explanation
Indices: 32893717--32893758 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
32893707 CAATAAAGAT
32893717 ATCTA-TTAATAA-AA
1 ATCTATTTAATAACAA
32893731 ATCTATTTAATAACAA
1 ATCTATTTAATAACAA
32893747 ATACTTATTTAA
1 AT-C-TATTTAA
32893759 CACTTGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.21
15 7 0.29
16 4 0.17
17 1 0.04
18 7 0.29
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (16 bp):
ATCTATTTAATAACAA
Found at i:32895931 original size:18 final size:18
Alignment explanation
Indices: 32895873--32896064 Score: 125
Period size: 18 Copynumber: 10.1 Consensus size: 18
32895863 AGCAATTAAT
*
32895873 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
32895893 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* *
32895910 CAATTACTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
32895928 CAATCAGTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* *
32895946 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
*
32895964 TAATCAGTTATTCAGTATCGA
1 CAATCAGTTATTCAGTA---A
* *
32895985 TCAATTGATTGGTTATCCAGTAA
1 -CAA-TCA---GTTATTCAGTAA
*
32896008 CAATCAATTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* ** *
32896026 AAATCAGACATACAGTAA
1 CAATCAGTTATTCAGTAA
* *
32896044 CAATTAAATTATTCAGTAA
1 CAA-TCAGTTATTCAGTAA
32896063 CA
1 CA
32896065 GTTGATCTTT
Statistics
Matches: 131, Mismatches: 31, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
17 13 0.10
18 77 0.59
19 12 0.09
20 8 0.06
21 3 0.02
22 5 0.04
23 3 0.02
26 10 0.08
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:32896248 original size:53 final size:53
Alignment explanation
Indices: 32896186--32896287 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
32896176 CCGGAACAGT
* *
32896186 AATAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATTTGG
1 AATAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTTGG
* *
32896239 AATAGTAACATTAACAGTACGGTACACAGAGTATCTCATCGGAACAAAT
1 AATAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAAT
32896288 CCAAAACAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.23
Consensus pattern (53 bp):
AATAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATTTGG
Found at i:32896299 original size:53 final size:53
Alignment explanation
Indices: 32896189--32896306 Score: 155
Period size: 53 Copynumber: 2.2 Consensus size: 53
32896179 GAACAGTAAT
* * **** *
32896189 AGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATTTGGAAT
1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAAAAC
* *
32896242 AGTAACATTAACAGTACGGTACACAGAGTATCTCATCGGAACAAATCCAAAAC
1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAAAAC
32896295 AGTAACAGTAAC
1 AGTAACAGTAAC
32896307 GGTAACAGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (53 bp):
AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAAAAC
Found at i:32896313 original size:59 final size:58
Alignment explanation
Indices: 32896180--32896316 Score: 140
Period size: 53 Copynumber: 2.4 Consensus size: 58
32896170 CCGAAGCCGG
* * * ****
32896180 AACAGTAATAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATTTGG
1 AACAGTAACAGTAAC-GTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAA
* *
32896239 AATAGTAACA-T----TAACAGTACGGTACACAGAGTATCTCATCGGAACAAATCCAA
1 AACAGTAACAGTAACGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAA
32896292 AACAGTAACAGTAACGGTAACAGTA
1 AACAGTAACAGTAAC-GTAACAGTA
32896317 ACAATATCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
53 44 0.71
54 1 0.02
58 1 0.02
59 16 0.26
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.20
Consensus pattern (58 bp):
AACAGTAACAGTAACGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAA
Found at i:32896865 original size:2 final size:2
Alignment explanation
Indices: 32896860--32896891 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
32896850 TCACACACAC
32896860 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32896892 ATTCAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:32897705 original size:2 final size:2
Alignment explanation
Indices: 32897698--32897741 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
32897688 TTTGTTTTGT
32897698 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32897740 TA
1 TA
32897742 ATAACAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32899383 original size:19 final size:19
Alignment explanation
Indices: 32899361--32899398 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32899351 TAAAAAAAAA
32899361 TTATTTTTTATTTTTAAAT
1 TTATTTTTTATTTTTAAAT
32899380 TTATTTTTTATTTTTAAAT
1 TTATTTTTTATTTTTAAAT
32899399 GATGCTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TTATTTTTTATTTTTAAAT
Found at i:32901610 original size:68 final size:68
Alignment explanation
Indices: 32901501--32901638 Score: 276
Period size: 68 Copynumber: 2.0 Consensus size: 68
32901491 CGAAATCTAG
32901501 AAAACTGAGAGCCAAAGCAACGGGGTAAGCATTTTTTTTATGCTTAGTAAGTCTCAAGGAATATA
1 AAAACTGAGAGCCAAAGCAACGGGGTAAGCATTTTTTTTATGCTTAGTAAGTCTCAAGGAATATA
32901566 ATC
66 ATC
32901569 AAAACTGAGAGCCAAAGCAACGGGGTAAGCATTTTTTTTATGCTTAGTAAGTCTCAAGGAATATA
1 AAAACTGAGAGCCAAAGCAACGGGGTAAGCATTTTTTTTATGCTTAGTAAGTCTCAAGGAATATA
32901634 ATC
66 ATC
32901637 AA
1 AA
32901639 CTCTAATTAC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (68 bp):
AAAACTGAGAGCCAAAGCAACGGGGTAAGCATTTTTTTTATGCTTAGTAAGTCTCAAGGAATATA
ATC
Found at i:32901953 original size:40 final size:40
Alignment explanation
Indices: 32901908--32902075 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
32901898 CGGAATATAA
32901908 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * **
32901948 CCGGATAGAAT-ATCTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32901988 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32902028 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
32902068 CCGGATAT
1 CCGGATAT
32902076 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 99 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32902058 original size:80 final size:80
Alignment explanation
Indices: 32901924--32902073 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
32901914 ATAATCACGT
*
32901924 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCATGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCATGAATGCCTTCGGGAT-TTAGC
32901988 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
32902004 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCAT-AATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCATGAA-TGCCTTCGGGATTTAG
32902067 CCCGGAT
64 CCCGGAT
32902074 ATCATTCAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
79 3 0.05
80 58 0.94
81 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCATGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:32909174 original size:40 final size:40
Alignment explanation
Indices: 32909129--32909259 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
32909119 CGGAATATAA
32909129 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
32909169 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32909209 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32909249 CCGGATATAAT
1 CCGGATATAAT
32909260 TTCCAGCATA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32909273 original size:40 final size:40
Alignment explanation
Indices: 32909145--32909296 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32909135 ATAATCACGT
* *
32909145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATC-CA
* ** *
32909185 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATATCCA
* *
32909225 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
* * *
32909265 GCATAATTGTCTTCAGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTC-GGGTCTTAGCCCGGATAT
32909297 CATTCCATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 83 0.91
41 6 0.07
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
Found at i:32911783 original size:32 final size:32
Alignment explanation
Indices: 32911747--32911841 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
32911737 CAATTGAATC
* *
32911747 TTCGTACATACATGTACCATATTGTACTAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
32911779 TTCGTACATACCTGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* * * * *
32911811 TCCGTAGATACCTGTATCATCTCGTACCAAT
1 TTCGTACATACCTGTACCATATTGTACCAAT
32911842 CTCATACTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:32911950 original size:28 final size:28
Alignment explanation
Indices: 32911919--32912014 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
32911909 CCTATACCTT
* *
32911919 GCACACTAAGTGTCGTTTTGGATGTTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* * * **
32911947 GCACACTAAGTGTCATCCTCGTTACTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* *
32911975 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGTCATTCTGGATGTTTC
32912003 GCACACTAAGTG
1 GCACACTAAGTG
32912015 CCATCCCCGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTGGATGTTTC
Found at i:32911979 original size:56 final size:56
Alignment explanation
Indices: 32911884--32912045 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
32911874 TGAATATTCA
* ** * * * *
32911884 ATGTATCGCACA-TTAGATGCCATATCCTATACCTT-GCACACTAAGTGTCGTTTTGG
1 ATGTATCGCACACTAAG-TGCCATCCCCGATA-CTTCGCACACTAAGTGCCATTCTGG
* * * *
32911940 ATGTTTCGCACACTAAGTGTCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
*
32911996 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACATTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCA
32912046 CATATAATTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 3 0.03
56 82 0.93
57 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:32912032 original size:28 final size:28
Alignment explanation
Indices: 32911944--32912045 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
32911934 TTTTGGATGT
* *
32911944 TTCGCACACTAAGTGTCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
32911972 TTCGCACACTAAGTGCCATTCTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
32911999 TATCGCACACTAAGTGCCATCCCCGATAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
*
32912028 TTCGCACATTAAGTGCCA
1 TTCGCACACTAAGTGCCA
32912046 CATATAATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:32913816 original size:2 final size:2
Alignment explanation
Indices: 32913809--32913833 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32913799 AATAATCATA
32913809 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
32913834 GGGAAAGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32918417 original size:40 final size:40
Alignment explanation
Indices: 32918372--32918502 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
32918362 CGGAATATAA
32918372 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
32918412 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32918452 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32918492 CCGGATATAAT
1 CCGGATATAAT
32918503 TTCCAGCATA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32918516 original size:40 final size:40
Alignment explanation
Indices: 32918388--32918538 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32918378 ATAATCACGT
* *
32918388 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATC-CA
* ** *
32918428 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATATCCA
* *
32918468 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
* *
32918508 GCATAATTGTCTTCAGGG--TTAGCCCGGATAT
1 GCACAATTGCCTTC-GGGTCTTAGCCCGGATAT
32918539 CATTCATTTC
Statistics
Matches: 91, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 14 0.15
40 71 0.78
41 6 0.07
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
Found at i:32921025 original size:32 final size:32
Alignment explanation
Indices: 32920989--32921083 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
32920979 CAATTGAATC
* *
32920989 TTCGTACATACATGTACCATATTGTACTAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
32921021 TTCGTACATACCTGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* * * * *
32921053 TCCGTAGATACCTGTATCATCTCGTACCAAT
1 TTCGTACATACCTGTACCATATTGTACCAAT
32921084 CTCATACTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:32921192 original size:28 final size:28
Alignment explanation
Indices: 32921161--32921256 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
32921151 CCTATACCTT
* *
32921161 GCACACTAAGTGTCGTTTTGGATGTTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* * * **
32921189 GCACACTAAGTGTCATCCTCGTTACTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* *
32921217 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGTCATTCTGGATGTTTC
32921245 GCACACTAAGTG
1 GCACACTAAGTG
32921257 CCATCCCCGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTGGATGTTTC
Found at i:32921221 original size:56 final size:56
Alignment explanation
Indices: 32921126--32921287 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
32921116 TGAATATTCA
* ** * * * *
32921126 ATGTATCGCACA-TTAGATGCCATATCCTATACCTT-GCACACTAAGTGTCGTTTTGG
1 ATGTATCGCACACTAAG-TGCCATCCCCGATA-CTTCGCACACTAAGTGCCATTCTGG
* * * *
32921182 ATGTTTCGCACACTAAGTGTCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
*
32921238 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACATTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCA
32921288 CATATAATTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 3 0.03
56 82 0.93
57 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:32921274 original size:28 final size:28
Alignment explanation
Indices: 32921186--32921287 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
32921176 TTTTGGATGT
* *
32921186 TTCGCACACTAAGTGTCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
32921214 TTCGCACACTAAGTGCCATTCTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
32921241 TATCGCACACTAAGTGCCATCCCCGATAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
*
32921270 TTCGCACATTAAGTGCCA
1 TTCGCACACTAAGTGCCA
32921288 CATATAATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:32927721 original size:40 final size:40
Alignment explanation
Indices: 32927613--32927822 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32927603 CGGGATTTAA
* * * * *
32927613 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
32927653 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32927693 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32927733 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32927773 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32927813 CCGGATATAT
1 CCGGATATAT
32927823 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:32948063 original size:39 final size:39
Alignment explanation
Indices: 32947945--32948127 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
32947935 TCGTTCAAAC
* * ** * **
32947945 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
32947985 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
32948025 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
32948064 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
32948103 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
32948128 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:32955507 original size:38 final size:39
Alignment explanation
Indices: 32955369--32955550 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
32955359 TCGTTCAAAC
* * ** * **
32955369 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
32955409 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
32955449 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
32955488 GCCTTC-GGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
32955526 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
32955551 CTCGAACATT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 37 0.30
39 49 0.40
40 38 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:32957875 original size:25 final size:26
Alignment explanation
Indices: 32957847--32957896 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32957837 ATAAACTATT
* * *
32957847 AATAATTCAA-AAATTTTAAATTTTA
1 AATAATTAAATAAAATTAAAATTTTA
32957872 AATAATTAAATAAAATTAAAATTTT
1 AATAATTAAATAAAATTAAAATTTT
32957897 GGAGAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AATAATTAAATAAAATTAAAATTTTA
Found at i:32958727 original size:30 final size:30
Alignment explanation
Indices: 32958670--32958728 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
32958660 GCCTTTTGAA
* * *
32958670 AATATTTACAAAAAGGGGCATCTAATTTTT
1 AATATTTACAAAAAGGAGCACCAAATTTTT
32958700 AATATTTACAAAAA-GAGCAACCAAATTTT
1 AATATTTACAAAAAGGAGC-ACCAAATTTT
32958729 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGGAGCACCAAATTTTT
Found at i:32966052 original size:21 final size:20
Alignment explanation
Indices: 32966027--32966077 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 20
32966017 AAATTAATAA
*
32966027 TAATTTATATAACTCAAAAT
1 TAATTTATATAAATCAAAAT
* *
32966047 TCAATTGGATATAAATTAAAAT
1 T-AATT-TATATAAATCAAAAT
32966069 TAA-TTATAT
1 TAATTTATAT
32966078 TATGAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 4 0.16
20 2 0.08
21 6 0.24
22 13 0.52
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (20 bp):
TAATTTATATAAATCAAAAT
Found at i:32966058 original size:22 final size:21
Alignment explanation
Indices: 32966033--32966073 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32966023 ATAATAATTT
*
32966033 ATATAACTCAAAATTCAATTGG
1 ATATAAATCAAAATT-AATTGG
*
32966055 ATATAAATTAAAATTAATT
1 ATATAAATCAAAATTAATT
32966074 ATATTATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATAAATCAAAATTAATTGG
Found at i:32968415 original size:24 final size:24
Alignment explanation
Indices: 32968383--32968467 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
32968373 AATCTCAAAT
*
32968383 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
32968407 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
** *
32968431 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
32968455 GCACTATGTGTGC
1 GCACTATGTGTGC
32968468 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
24 51 0.91
25 5 0.09
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:32976243 original size:24 final size:24
Alignment explanation
Indices: 32976211--32976297 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
32976201 AATCTCAAAT
32976211 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
32976235 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
32976259 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32976283 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32976298 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:32976263 original size:48 final size:48
Alignment explanation
Indices: 32976211--32976319 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
32976201 AATCTCAAAT
** *
32976211 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
32976259 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
32976307 GCACTATGTGTGC
1 GCACTATGTGTGC
32976320 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:32976310 original size:24 final size:24
Alignment explanation
Indices: 32976211--32976319 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
32976201 AATCTCAAAT
*
32976211 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
32976235 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
32976259 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
32976283 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
32976307 GCACTATGTGTGC
1 GCACTATGTGTGC
32976320 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:32978278 original size:2 final size:2
Alignment explanation
Indices: 32978271--32978306 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32978261 AATGATTTTC
32978271 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32978307 TTCATATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32979340 original size:367 final size:367
Alignment explanation
Indices: 32978669--32979767 Score: 2013
Period size: 367 Copynumber: 3.0 Consensus size: 367
32978659 ATAATAGGGA
32978669 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
* * * *
32978734 TTGTGTCTGCAGTAAATGCTGG--CTCAATCGATCGATTCATGTAACATGATGCTCACAAAGAGC
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
*
32978797 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCGGGAACTATATAACAG
131 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
32978862 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
196 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
32978927 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
261 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
32978992 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
326 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
* * *
32979034 TTTCAAGCAAGCCATGTCAGAAAGATCATAAAAGCCTATATCAGCATACTCACGAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
*
32979099 TTGTGTCCGCAGTAAATCCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
*
32979164 TATGGTAGTGTGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
131 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
*
32979229 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCTGAGCTATAATGTCCACAACATATGCAGGA
196 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
*
32979294 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTTATTCTTCAAAAGGGACTTATCAATT
261 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
32979359 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
326 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
32979401 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
* *
32979466 TTGTGTCCACAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAGGATGCTCACAAAGAGC
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
* * *
32979531 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTTGTAGGAACTATATAATAG
131 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
32979596 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
196 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
* *
32979661 CTATAATCAATATGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGAGACTTATCAATT
261 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
32979726 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
326 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
32979768 ACTTATGCAA
Statistics
Matches: 706, Mismatches: 26, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
365 82 0.12
367 624 0.88
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (367 bp):
TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
Found at i:32986523 original size:18 final size:18
Alignment explanation
Indices: 32986502--32986539 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
32986492 TCATAATTGG
32986502 AAATGTATTTAAAATGTT
1 AAATGTATTTAAAATGTT
32986520 AAATGTATTTAAAATGTT
1 AAATGTATTTAAAATGTT
32986538 AA
1 AA
32986540 GTTCCGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (18 bp):
AAATGTATTTAAAATGTT
Found at i:32994123 original size:3 final size:3
Alignment explanation
Indices: 32994117--32994181 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
32994107 AATTTCATAA
32994117 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
32994165 AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AA
32994182 TTTTTTGGTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:32995830 original size:3 final size:3
Alignment explanation
Indices: 32995822--32995854 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32995812 CAATCACTCT
32995822 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32995855 TTACCATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:32997992 original size:21 final size:21
Alignment explanation
Indices: 32997968--32998010 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32997958 TTATAATTAT
32997968 GATTGATTGAATTAAAAAAAA
1 GATTGATTGAATTAAAAAAAA
32997989 GATTGATTGAATTAAAAAAAA
1 GATTGATTGAATTAAAAAAAA
32998010 G
1 G
32998011 TAAAAGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (21 bp):
GATTGATTGAATTAAAAAAAA
Found at i:32999944 original size:29 final size:28
Alignment explanation
Indices: 32999922--33000001 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 28
32999912 AAATTTAATC
*
32999922 AAATTAAAATTTCATATATAAATTATATA
1 AAATCAAAATTT-ATATATAAATTATATA
* *
32999951 AAATCAAAGTTTATATATAATATTAATTATT
1 AAATCAAAATTTATATATAA-ATT-A-TATA
**
32999982 GTATCAAAATTTATATATAA
1 AAATCAAAATTTATATATAA
33000002 TTTTGATATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 8 0.19
29 13 0.31
30 1 0.02
31 20 0.48
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (28 bp):
AAATCAAAATTTATATATAAATTATATA
Found at i:33000323 original size:3 final size:3
Alignment explanation
Indices: 33000315--33000357 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
33000305 AGTTTAATTG
33000315 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
33000358 TAGAGAATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:33000493 original size:6 final size:6
Alignment explanation
Indices: 33000482--33000512 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
33000472 TTTAAGTAAA
33000482 TAGAAT TAGAAT TAGAAT TAGAAT TA-AAT TA
1 TAGAAT TAGAAT TAGAAT TAGAAT TAGAAT TA
33000513 TCATGAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (6 bp):
TAGAAT
Found at i:33000683 original size:10 final size:10
Alignment explanation
Indices: 33000668--33000703 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
33000658 TAATATGTAC
33000668 AAATTTATCT
1 AAATTTATCT
33000678 AAATTTA--T
1 AAATTTATCT
33000686 AAATTTATCT
1 AAATTTATCT
33000696 AAATTTAT
1 AAATTTAT
33000704 ATTACTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.33
10 16 0.67
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (10 bp):
AAATTTATCT
Found at i:33000691 original size:18 final size:18
Alignment explanation
Indices: 33000668--33000704 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
33000658 TAATATGTAC
33000668 AAATTTATCTAAATTTAT
1 AAATTTATCTAAATTTAT
33000686 AAATTTATCTAAATTTAT
1 AAATTTATCTAAATTTAT
33000704 A
1 A
33000705 TTACTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (18 bp):
AAATTTATCTAAATTTAT
Found at i:33001486 original size:30 final size:30
Alignment explanation
Indices: 33001450--33001548 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
33001440 CTAGCCTTTG
33001450 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
33001480 CCACCACCAACTTCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
33001510 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
33001540 CCACCACCA
1 CCACCACCA
33001549 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:33002060 original size:23 final size:23
Alignment explanation
Indices: 33002023--33002152 Score: 86
Period size: 25 Copynumber: 5.5 Consensus size: 23
33002013 CTTTTTTTGT
*
33002023 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
33002046 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
33002068 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
33002091 TATTACATATATATATATT-ATACTA
1 TATT--ATATATAT-TCTTAATACTA
* *
33002116 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
33002141 TATTATTTATAT
1 TATTATATATAT
33002153 ATATATATTT
Statistics
Matches: 82, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
22 17 0.21
23 27 0.33
24 6 0.07
25 30 0.37
26 2 0.02
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:33002171 original size:25 final size:26
Alignment explanation
Indices: 33002097--33002198 Score: 84
Period size: 25 Copynumber: 3.9 Consensus size: 26
33002087 TCTATATTAC
* *
33002097 ATATATATATATTATACTATTTTATGT
1 ATATATATATATT-TACTATATTATTT
* * *
33002124 ATATATCTTTA-ATACTATATTATTT
1 ATATATATATATTTACTATATTATTT
*
33002149 ATATATATATATTTAC-ATGTTATCTT
1 ATATATATATATTTACTATATTAT-TT
* *
33002175 ATGTATATAT-TTTAATTATATTAT
1 ATATATATATATTT-ACTATATTAT
33002199 GTATGTATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
25 29 0.49
26 15 0.25
27 15 0.25
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (26 bp):
ATATATATATATTTACTATATTATTT
Found at i:33002193 original size:22 final size:23
Alignment explanation
Indices: 33002142--33002233 Score: 89
Period size: 24 Copynumber: 3.9 Consensus size: 23
33002132 TTAATACTAT
*
33002142 ATTAT-TTATATATATATATTTAC
1 ATTATATTATGTATATAT-TTTAC
*
33002165 ATGTTATCTTATGTATATATTTTA-
1 A--TTATATTATGTATATATTTTAC
*
33002189 ATTATATTATGTATGTATTTTTAC
1 ATTATATTATGTATATA-TTTTAC
* *
33002213 ACTATATTATGTACATATTTT
1 ATTATATTATGTATATATTTT
33002234 TAATATTATC
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
22 14 0.24
23 10 0.17
24 15 0.26
25 8 0.14
26 11 0.19
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (23 bp):
ATTATATTATGTATATATTTTAC
Found at i:33002239 original size:20 final size:20
Alignment explanation
Indices: 33002216--33002274 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
33002206 TTTTTACACT
33002216 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
33002236 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
33002259 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
33002275 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:33002417 original size:16 final size:15
Alignment explanation
Indices: 33002393--33002427 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
33002383 TAATTATTAT
33002393 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
33002409 TATTTTAATATTTTA
1 TATTCTAATATTTTA
33002424 TATT
1 TATT
33002428 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:33008509 original size:43 final size:41
Alignment explanation
Indices: 33008419--33008521 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 41
33008409 AAAAAAAATC
33008419 GATGAAAACCCGAAAAGG-GTCTTGAAAAAAAAAGATCAAG
1 GATGAAAACCCGAAAAGGCGTCTTGAAAAAAAAAGATCAAG
* *
33008459 G-TGAAAACCCGAAAAGGCGTCTTGATTAACACAAAAGAT-TAG
1 GATGAAAACCCGAAAAGGCGTCTTGA--AA-AAAAAAGATCAAG
*
33008501 GATGAAAACCCGAAAGGGCGT
1 GATGAAAACCCGAAAAGGCGT
33008522 TCTAATGAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
39 16 0.29
40 8 0.15
42 5 0.09
43 26 0.47
ACGTcount: A:0.46, C:0.16, G:0.24, T:0.15
Consensus pattern (41 bp):
GATGAAAACCCGAAAAGGCGTCTTGAAAAAAAAAGATCAAG
Found at i:33009502 original size:73 final size:73
Alignment explanation
Indices: 33009382--33009548 Score: 253
Period size: 73 Copynumber: 2.3 Consensus size: 73
33009372 CAATTTCTTT
*
33009382 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
33009447 CTGAGGTAA
65 CCGAGGTAA
* *
33009456 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
33009521 CGAGGTAT
66 CGAGGTAA
* * *
33009529 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
33009549 TTTCTGCTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 67 0.79
74 18 0.21
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
CGAGGTAA
Found at i:33009572 original size:13 final size:13
Alignment explanation
Indices: 33009528--33009572 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
33009518 CGCCGAGGTA
33009528 TTTTTAATTTCTG
1 TTTTTAATTTCTG
33009541 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
33009555 CTTTTAATTTCTG
1 TTTTTAATTTCTG
33009568 TTTTT
1 TTTTT
33009573 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:33009595 original size:100 final size:100
Alignment explanation
Indices: 33009459--33009749 Score: 435
Period size: 100 Copynumber: 2.9 Consensus size: 100
33009449 GAGGTAATTT
* * * *
33009459 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
33009524 GGTATTTTTAATTTCTGTTTTTCAATTTCTG-CTTT
66 GGTATTTTCAATTTCT-TTTTTCAATTTCTGCCTTA
* *
33009559 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
33009624 GGTATTTTCAATTTCTTTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTTTTTTCAATTTCTGCCTTA
* *
33009659 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
33009722 GGTATTTTCAATTTTCTTTTTTTAATTT
66 GGTATTTTCAA-TTTCTTTTTTCAATTT
33009750 ATGTTTCAAA
Statistics
Matches: 175, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
98 58 0.33
99 28 0.16
100 89 0.51
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.40
Consensus pattern (100 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTTTTTTCAATTTCTGCCTTA
Found at i:33009993 original size:75 final size:70
Alignment explanation
Indices: 33009741--33010009 Score: 330
Period size: 76 Copynumber: 3.7 Consensus size: 70
33009731 AATTTTCTTT
* *
33009741 TTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCTG
1 TTTTAATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCTG
33009806 AGGTAA
66 AGGT-A
*
33009812 TTTTAATTTTTGTTTTCAAAAATCAACTCATATTCATATTGCGAGAAGTGAGTTGAGCCTCAAGA
1 TTTTAATTTTT-TTTTCAAAAA--AA-TCA-ACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGA
33009877 CGCTGAGGTA
61 CGCTGAGGTA
* * * *
33009887 ATTTAA-TTTTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGC
*
33009949 TGAGATA
64 TGAGGTA
*
33009956 TTTTCAATTCTATTTTTTCAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAG
1 TTTT-AATT-T-TTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
33010010 TCTCGGGCCA
Statistics
Matches: 174, Mismatches: 11, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
67 29 0.17
68 3 0.02
69 16 0.09
70 2 0.01
71 14 0.08
72 10 0.06
73 10 0.06
74 18 0.10
75 30 0.17
76 42 0.24
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (70 bp):
TTTTAATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCTG
AGGTA
Found at i:33010048 original size:75 final size:75
Alignment explanation
Indices: 33009753--33010048 Score: 260
Period size: 76 Copynumber: 4.0 Consensus size: 75
33009743 TTAATTTATG
* * * * *
33009753 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATACTTTC
* *
33009816 AATTTTTG-T
66 AATTCTAGTT
* * * * *
33009825 TTTCAAAAATCAACTCATATTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAA
1 TTTCAAAAA--AA-TCA-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAC
33009888 TTT-AATT-T--TT
62 TTTCAATTCTAGTT
* *
33009898 TGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATACTTTC
*
33009961 AATTCTATTT
66 AATTCTAGTT
* * * *
33009971 TTTCAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGTCTCGGGCCACACG-TCGAGGTCCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGATACT
33010034 TTCAATTCT-GTT
63 TTCAATTCTAGTT
33010046 TTT
1 TTT
33010049 AATTTCTTTT
Statistics
Matches: 194, Mismatches: 14, Indels: 29
0.82 0.06 0.12
Matches are distributed among these distances:
67 29 0.15
68 3 0.02
69 16 0.08
70 4 0.02
71 4 0.02
72 9 0.05
73 9 0.05
74 20 0.10
75 34 0.18
76 66 0.34
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATACTTTC
AATTCTAGTT
Found at i:33010133 original size:87 final size:85
Alignment explanation
Indices: 33010059--33010229 Score: 218
Period size: 87 Copynumber: 2.0 Consensus size: 85
33010049 AATTTCTTTT
* * *
33010059 TTTTTAATTTATGTGTTTCA-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTATGT-TTTAATAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
*
33010123 CTGAGGTGTTTTCCATTTCTA
65 CTGAGGTGTTTTCAATTTCTA
*
33010144 TTTTCAATTTCTGTTTTAATTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTC
1 TTTTCAATTTATGTTTTAA-T-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
** *
33010209 ACATTGAGGTATTTTCAATTT
62 ACGCTGAGGTGTTTTCAATTT
33010230 ATTCAAAAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 4 0.05
85 12 0.16
87 40 0.55
89 17 0.23
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (85 bp):
TTTTCAATTTATGTTTTAATAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGC
TGAGGTGTTTTCAATTTCTA
Found at i:33010402 original size:76 final size:76
Alignment explanation
Indices: 33010234--33010592 Score: 447
Period size: 76 Copynumber: 4.9 Consensus size: 76
33010224 CAATTTATTC
*
33010234 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC----TCACATGCTGAGGT-GTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTGAGGTAGTTTTCAATT
33010294 TCTGTTTTTCA
66 TCTGTTTTTCA
* *
33010305 AAAAATCAACTCATATTGCGAGAGGTGAGTTGATGCCTTGGTTACACGCTGAGGTATTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTTGGTCACACGCTGAGGTAGTTTTCAAT
*
33010370 TTCTGTTTGTC-
65 TTCTGTTTTTCA
* * * *
33010381 AAAAATCAACTCATATTGCGAGAGGTAAGCTGAGCCTCGGTCACACGTCTGAGGT-GTTTTCAAC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACG-CTGAGGTAGTTTTCAAT
33010445 TTCTGTTTTTCA
65 TTCTGTTTTTCA
* * *
33010457 AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGTTGAGGTAGTTTT-AAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTGAGGTAGTTTTCAAT
**
33010519 TTCTGTTCATCA
65 TTCTGTTTTTCA
** **
33010531 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC-TGG-GGCACGCTGAGGTA-TTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTGAGGTAGTTTTCAATT
33010593 AATTTTTTTT
Statistics
Matches: 251, Mismatches: 25, Indels: 22
0.84 0.08 0.07
Matches are distributed among these distances:
71 33 0.13
72 9 0.04
73 15 0.06
74 51 0.20
75 39 0.16
76 84 0.33
77 20 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTGAGGTAGTTTTCAATT
TCTGTTTTTCA
Found at i:33010720 original size:82 final size:83
Alignment explanation
Indices: 33010531--33010732 Score: 232
Period size: 85 Copynumber: 2.4 Consensus size: 83
33010521 CTGTTCATCA
* * *
33010531 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTGGGGCACGCTGAGGTATTTTCAATTAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCACACAGAGGTATTTTCAA-TAA-
* *
33010596 TTTTTTTCAATTTATGCTTT
64 TTGTTTACAATTTATGCTTT
** * * *
33010616 TCAAATCAACTTATATTACGAGAAATGAGTTGAGCCTCGGTCACAACAGAGGTATTTTCAA-AA-
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCAC-ACAGAGGTATTTTCAATAAT
33010679 TGTTTACAAATTT-TG-TTT
65 TGTTTAC-AATTTATGCTTT
*
33010697 GAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 -AAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
33010733 TTGGCTCACG
Statistics
Matches: 99, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
81 3 0.03
82 37 0.37
83 5 0.05
84 2 0.02
85 38 0.38
86 14 0.14
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (83 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCACACAGAGGTATTTTCAATAATT
GTTTACAATTTATGCTTT
Found at i:33011506 original size:30 final size:30
Alignment explanation
Indices: 33011471--33011566 Score: 174
Period size: 30 Copynumber: 3.2 Consensus size: 30
33011461 CTAGCCTTTG
33011471 CCACCAACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
33011501 CCACCAACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
* *
33011531 CTACCTACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
33011561 CCACCA
1 CCACCA
33011567 CTTGTACCTA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCAACTCCACTAGCCACACTTGCTCCA
Found at i:33012217 original size:22 final size:22
Alignment explanation
Indices: 33012187--33012292 Score: 67
Period size: 22 Copynumber: 4.9 Consensus size: 22
33012177 TATTTACATG
* *
33012187 TTATCTTATTTATATATTTTAA
1 TTATATTATGTATATATTTTAA
* *
33012209 TTCTATTATGTATGTATTTTTACA
1 TTATATTATGTATATA-TTTTA-A
* *
33012233 CTATATTATGTACATATTTTAA
1 TTATATTATGTATATATTTTAA
* * *
33012255 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
33012275 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
33012293 ATGTAGTATT
Statistics
Matches: 64, Mismatches: 16, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
19 9 0.14
20 2 0.03
21 4 0.06
22 26 0.41
23 10 0.16
24 13 0.20
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:33012431 original size:16 final size:15
Alignment explanation
Indices: 33012407--33012441 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
33012397 TAATTATTAT
33012407 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
33012423 TATTTTAATATTTTA
1 TATTCTAATATTTTA
33012438 TATT
1 TATT
33012442 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:33017124 original size:12 final size:12
Alignment explanation
Indices: 33017109--33017146 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
33017099 AACCTAAACT
33017109 AAAAATGAAAAG
1 AAAAATGAAAAG
33017121 AAAAATG-AAAG
1 AAAAATGAAAAG
*
33017132 GAAAA-GAAAAG
1 AAAAATGAAAAG
33017143 AAAA
1 AAAA
33017147 CCTAACCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 1 0.04
11 15 0.65
12 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (12 bp):
AAAAATGAAAAG
Found at i:33021384 original size:46 final size:48
Alignment explanation
Indices: 33021278--33021399 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 48
33021268 TGTCTTCGAC
** * *
33021278 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATA-CTAAT
* * *
33021328 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATATA-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATACTAAT
*
33021374 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
33021400 CTGTCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 27 0.43
48 7 0.11
50 29 0.46
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATACTAAT
Found at i:33021411 original size:10 final size:10
Alignment explanation
Indices: 33021396--33021424 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
33021386 GGCTCATTTC
33021396 TGTCCTGTCT
1 TGTCCTGTCT
33021406 TGTCCTGTCT
1 TGTCCTGTCT
33021416 TGTCCTGTC
1 TGTCCTGTC
33021425 AACCCCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.21, T:0.48
Consensus pattern (10 bp):
TGTCCTGTCT
Found at i:33023113 original size:46 final size:45
Alignment explanation
Indices: 33023041--33023215 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
33023031 TGTAACCCGC
*
33023041 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
33023087 CCATAAGTGAACTCGGACTCAGCTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * **
33023133 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
33023180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
33023216 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:33023160 original size:93 final size:93
Alignment explanation
Indices: 33023048--33023220 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
33023038 CGCCCATAAG
** * *
33023048 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33023113 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
33023141 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
33023206 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
33023221 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:33043492 original size:52 final size:51
Alignment explanation
Indices: 33043372--33043551 Score: 249
Period size: 52 Copynumber: 3.5 Consensus size: 51
33043362 AGTAACGACT
*
33043372 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
33043421 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAACTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
33043473 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATTGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA--GAAGATAGCTTTGGTC-A
* *
33043526 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
33043552 CGAGTATCCG
Statistics
Matches: 118, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
49 34 0.29
51 6 0.05
52 43 0.36
53 34 0.29
54 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:33058098 original size:11 final size:11
Alignment explanation
Indices: 33058077--33058105 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33058067 TCAAAAACGT
33058077 AAAAATC-ATC
1 AAAAATCAATC
33058087 AAAAATCAATC
1 AAAAATCAATC
33058098 AAAAATCA
1 AAAAATCA
33058106 TACCTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATCAATC
Found at i:33061637 original size:43 final size:42
Alignment explanation
Indices: 33061558--33061669 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
33061548 TATCGTACCA
* **
33061558 ATGCCATATCCCAGATATGTTCTTACATGTAATCTCATGTCC
1 ATGCCATAGCCCAGATATGTTCTTACATCAAATCTCATGTCC
* * **
33061600 ATGCCAATAGCCCAGCTATGTTCTTACA-CAAAGTCTCATATTG
1 ATGCC-ATAGCCCAGATATGTTCTTACATCAAA-TCTCATGTCC
* * *
33061643 ATGCCATATCCTAGATATGGTCTTACA
1 ATGCCATAGCCCAGATATGTTCTTACA
33061670 CGTAGTCTCA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGTTCTTACATCAAATCTCATGTCC
Found at i:33061712 original size:42 final size:42
Alignment explanation
Indices: 33061558--33061719 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
33061548 TATCGTACCA
* ** * * **
33061558 ATGCCATATCCCAGATATGTTCTTACATGTAATCTCATGTCC
1 ATGCCATATCCCAGATATGGTCTTACACATAGTCTCATATTG
* * * *
33061600 ATGCCAATAGCCCAGCTATGTTCTTACACAAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACATAGTCTCATATTG
* *
33061643 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACATAGTCTCATATTG
* *
33061685 ATGTCATATCCCAAATATGGTCTTACACATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACATAGTCT
33061720 TAATAACCCT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAGTCTCATATTG
Found at i:33066707 original size:46 final size:44
Alignment explanation
Indices: 33066657--33066786 Score: 161
Period size: 46 Copynumber: 2.8 Consensus size: 44
33066647 CACATCTTGT
*
33066657 AGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA
1 AGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTC-A
* *
33066703 AGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCA
1 AGCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCA
* *
33066748 ATGTCGATGCCATGTTCCAGACATGGTCTTACACTGGCT
1 A-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
33066787 CTCATAAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
45 2 0.03
46 45 0.62
47 14 0.19
48 12 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
AGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCA
Found at i:33074846 original size:19 final size:19
Alignment explanation
Indices: 33074823--33074868 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
33074813 TTTATTTAGG
33074823 TAAATAAAACTTATCTATCC
1 TAAATAAAACTTATCTA-CC
* *
33074843 -AAATAAGATTTATCTACC
1 TAAATAAAACTTATCTACC
33074861 TAAATAAA
1 TAAATAAA
33074869 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAATAAAACTTATCTACC
Found at i:33083513 original size:93 final size:94
Alignment explanation
Indices: 33083335--33083579 Score: 420
Period size: 93 Copynumber: 2.6 Consensus size: 94
33083325 CCCTTCGGGA
* *
33083335 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
33083400 CTTCACATCCATCACATCGGCCATTAGGT
66 CTTCACATCCATCACATCGGCCATTAGGC
*
33083429 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTC-GCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
33083493 TTTCACATTCATCACATCGGCCATTAGGC
66 CTTCACATCCATCACATCGGCCATTAGGC
*
33083522 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
33083580 CACATATCTT
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
93 88 0.62
94 54 0.38
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATCCATCACATCGGCCATTAGGC
Found at i:33083606 original size:53 final size:47
Alignment explanation
Indices: 33083335--33083579 Score: 384
Period size: 47 Copynumber: 5.2 Consensus size: 47
33083325 CCCTTCGGGA
* *
33083335 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
33083382 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33083429 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTC-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33083475 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33083522 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
33083569 CTTATCACATA
1 CTTATCACATA
33083580 CACATATCTT
Statistics
Matches: 179, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 42 0.23
47 137 0.77
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:33086676 original size:28 final size:28
Alignment explanation
Indices: 33086636--33086789 Score: 107
Period size: 28 Copynumber: 5.5 Consensus size: 28
33086626 AAACGAAATC
*
33086636 CGCACACACAGTGCCCACTGATCGATCT
1 CGCACACACAGTGCCCACTGAACGATCT
* * ** * *
33086664 CGCACACATAGTGCTCGGTTAAAGAAT-T
1 CGCACACACAGTGCCCACTGAACG-ATCT
*
33086692 CGCACACACAGTGTCCACTG-ACTGATCT
1 CGCACACACAGTGCCCACTGAAC-GATCT
* * ** * *
33086720 CGCACACATAGTGCTCGGTTAAAGAAT-T
1 CGCACACACAGTGCCCACTGAACG-ATCT
* *
33086748 CGCACACACAGTGTCCACTGACCGATCT
1 CGCACACACAGTGCCCACTGAACGATCT
*
33086776 CGCACACATAGTGC
1 CGCACACACAGTGC
33086790 TTGGTTAAAG
Statistics
Matches: 89, Mismatches: 31, Indels: 12
0.67 0.23 0.09
Matches are distributed among these distances:
27 5 0.06
28 79 0.89
29 5 0.06
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (28 bp):
CGCACACACAGTGCCCACTGAACGATCT
Found at i:33086697 original size:56 final size:55
Alignment explanation
Indices: 33086636--33086842 Score: 321
Period size: 56 Copynumber: 3.7 Consensus size: 55
33086626 AAACGAAATC
*
33086636 CGCACACACAGTGCCCACTGATCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGA-CGATCTCGCACACATAGTGCTCGGTTAAAGAATT
33086692 CGCACACACAGTGTCCACTGACTGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGAC-GATCTCGCACACATAGTGCTCGGTTAAAGAATT
*
33086748 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTTGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGA-CGATCTCGCACACATAGTGCTCGGTTAAAGAATT
* *
33086804 CGCACACACAGTGTCTCAAT-TC-AT-TCGCACACATAGTGC
1 CGCACACACAGTGTC-CACTGACGATCTCGCACACATAGTGC
33086843 CTATATTCAT
Statistics
Matches: 144, Mismatches: 4, Indels: 9
0.92 0.03 0.06
Matches are distributed among these distances:
53 15 0.10
54 2 0.01
55 2 0.01
56 121 0.84
57 4 0.03
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (55 bp):
CGCACACACAGTGTCCACTGACGATCTCGCACACATAGTGCTCGGTTAAAGAATT
Found at i:33086835 original size:25 final size:25
Alignment explanation
Indices: 33086801--33086855 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
33086791 TGGTTAAAGA
*
33086801 ATTCGCACACACAGTGTCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
33086826 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
33086851 ATTCG
1 ATTCG
33086856 TTATTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:33087084 original size:40 final size:40
Alignment explanation
Indices: 33087024--33087254 Score: 408
Period size: 40 Copynumber: 5.8 Consensus size: 40
33087014 CACATCATCG
* *
33087024 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
*
33087064 GCACGAATGCTCTTCGGGACTTAGCCTGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
33087104 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
* *
33087144 ACACAAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
33087184 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
*
33087224 GCACGAATGCTCTTCGGGACTTAACCCGGAT
1 GCACGAATGCTCTTCGGGACTTAGCCCGGAT
33087255 CATCGTCGAG
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
Found at i:33087337 original size:38 final size:38
Alignment explanation
Indices: 33087290--33087402 Score: 88
Period size: 38 Copynumber: 3.0 Consensus size: 38
33087280 GAAATCTCCA
*
33087290 CACAAAGCCAGCGAAT-TTTAATCCGGACATAATCTCTG
1 CACAAAGCCAGCGAATCTTT-ACCCGGACATAATCTCTG
* * * *
33087328 CACATAGCCATCGGATCTTTACCCGGGCATAATCTC--
1 CACAAAGCCAGCGAATCTTTACCCGGACATAATCTCTG
* * ** *
33087364 CACATATAGTCATCGGGTCTTTACCCGGACACAATCTCT
1 CACA-A-AGCCAGCGAATCTTTACCCGGACATAATCTCT
33087403 ACTTATAGTC
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
36 4 0.07
38 54 0.89
39 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (38 bp):
CACAAAGCCAGCGAATCTTTACCCGGACATAATCTCTG
Found at i:33087410 original size:38 final size:38
Alignment explanation
Indices: 33087312--33087424 Score: 154
Period size: 38 Copynumber: 3.0 Consensus size: 38
33087302 GAATTTTAAT
* * * *
33087312 CCGGACATAATCTCTGCACATAGCCATCGGATCTTTAC
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
* *
33087350 CCGGGCATAATCTCCACATATAGTCATCGGGTCTTTAC
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
* *
33087388 CCGGACACAATCTCTACTTATAGTCATCGGGTCTTTA
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTA
33087425 AGCCCGGATT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (38 bp):
CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
Found at i:33087939 original size:15 final size:16
Alignment explanation
Indices: 33087919--33087948 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33087909 AAGATCTTAA
33087919 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
33087934 AATCATAACCTTACT
1 AATCATAACCTTACT
33087949 GAGGGCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:33088228 original size:42 final size:42
Alignment explanation
Indices: 33088161--33088280 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
33088151 TCTCGTGTCA
* *
33088161 ATGCCAATAGCCCAGCTATAGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
* * * *
33088204 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCATATTG
1 ATGCCATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
* * * *
33088246 ATGCCATATCCTAGATCTAGTCTTCCACGTAGTCT
1 ATGCCATATCCCAGATATAGTCTTACACGAAGTCT
33088281 TAGTAACCCT
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 61 0.92
43 5 0.08
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
Found at i:33095017 original size:2 final size:2
Alignment explanation
Indices: 33094968--33094998 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
33094958 TGATCTAAAT
33094968 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33094999 TACAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33100691 original size:8 final size:8
Alignment explanation
Indices: 33100678--33100704 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
33100668 TTTTATAAGT
33100678 TTTAGAAA
1 TTTAGAAA
33100686 TTTAGAAA
1 TTTAGAAA
33100694 TTTAGAAA
1 TTTAGAAA
33100702 TTT
1 TTT
33100705 TATATAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (8 bp):
TTTAGAAA
Found at i:33102207 original size:393 final size:395
Alignment explanation
Indices: 33101481--33102247 Score: 1200
Period size: 393 Copynumber: 1.9 Consensus size: 395
33101471 TTCTTCCAGC
* *
33101481 TGTAAGAGACCTTAATAATTTCCTCCAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCTGA
1 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCGA
* * * * *
33101546 TTCTTCCAAATTTGCCGAAGAAATTAAACCAAATAAACGGGCCCATATTGAACCTCTTGTGCTAT
66 TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAACAGGCCCATACTGAACCTCTCGTGCTAT
* * *
33101611 TATCTGACAGGTCACGAATATTAGAGAGTAACCATTTTGATAGATTACCATTGAAGAACCATCAA
131 TATCCGACAGGTCACGAAGATTAGAGAGTAACCATTATGATAGATTACCATTGAAGAACCATCAA
*
33101676 TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGCGAACGGGCAATCTCTAAGGACATG
196 TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGCGAACGGGCAATCTCTAAAGACATG
*
33101741 CAAAGCATCCTCAGTAGTATAACCACATAAGTGACATGACTTTTCTTGTCCAATCCCTCTCCGAA
261 CAAAGCATCCTCAGTAGTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCGAA
*
33101806 TTCTTTTAGAGTTAGTTAATAGTCTTT-TTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
326 CTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
33101870 CTAAA
391 CTAAA
* *
33101875 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGCTTTTCCTTGGAAGATATTCAAGTTCCGA
1 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCGA
* ** * *
33101940 TTCTTTCAAATTCGCCAAAG-AATTAAACTGAA-GAACTAGGCCTATACTGAACCTCTCGTGCTA
66 TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAAC-AGGCCCATACTGAACCTCTCGTGCTA
*** * * * * *
33102003 TTATCCGTTTGTTCACGCAGATTAGAGAGTAACCATTATGATAGGTTACCATTGAAGAACCGTCT
130 TTATCCGACAGGTCACGAAGATTAGAGAGTAACCATTATGATAGATTACCATTGAAGAACCATCA
* *
33102068 ATGTTGATTAGAAGGGATGACTTGATTCTAAATATCCTTCGTGAACGGGCAATCTCTAAAGACAT
195 ATGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGCGAACGGGCAATCTCTAAAGACAT
*
33102133 GCAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCC-A
260 GCAAAGCATCCTCAGTAGTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCGA
*
33102197 GACTCTTTTAGAGTTAGTTAATAGTTTTTATTTAAAGACCAACCAGATGAA
325 -ACTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAA
33102248 ATATTTGACT
Statistics
Matches: 338, Mismatches: 32, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
392 4 0.01
393 235 0.70
394 99 0.29
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (395 bp):
TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCGA
TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAACAGGCCCATACTGAACCTCTCGTGCTAT
TATCCGACAGGTCACGAAGATTAGAGAGTAACCATTATGATAGATTACCATTGAAGAACCATCAA
TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGCGAACGGGCAATCTCTAAAGACATG
CAAAGCATCCTCAGTAGTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCGAA
CTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
CTAAA
Found at i:33104501 original size:21 final size:21
Alignment explanation
Indices: 33104443--33104501 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
33104433 TTCGGGGCTA
* *
33104443 ATTTAAAAAATTTAAAGATCC
1 ATTTAAAATATTTAAAAATCC
* **
33104464 ATTAAAAATATGGAAAAATACC
1 ATTTAAAATATTTAAAAAT-CC
33104486 -TTTAAAATATTTAAAA
1 ATTTAAAATATTTAAAA
33104502 TTCCCTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (21 bp):
ATTTAAAATATTTAAAAATCC
Found at i:33105778 original size:28 final size:28
Alignment explanation
Indices: 33105738--33105793 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
33105728 GGGTTACAGA
33105738 GCATTACCGGACTTATCACTTAAACAAT
1 GCATTACCGGACTTATCACTTAAACAAT
*
33105766 GCATTACTGGACTTATCACTTAAACAAT
1 GCATTACCGGACTTATCACTTAAACAAT
33105794 CCTACATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (28 bp):
GCATTACCGGACTTATCACTTAAACAAT
Found at i:33106981 original size:30 final size:30
Alignment explanation
Indices: 33106935--33106991 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
33106925 ATCCCGAGCC
33106935 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATGCAAAAGTT
* * * *
33106965 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAATGTAAATATGCAAAA
33106992 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCAAAAGTT
Found at i:33107376 original size:116 final size:116
Alignment explanation
Indices: 33107172--33107405 Score: 459
Period size: 116 Copynumber: 2.0 Consensus size: 116
33107162 AGCATAATGG
*
33107172 TTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGTTTTG
1 TTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTG
33107237 TGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATATAA
66 TGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATATAA
33107288 TTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTG
1 TTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTG
33107353 TGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATATAA
66 TGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATATAA
33107404 TT
1 TT
33107406 GTTACCGAGT
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (116 bp):
TTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTG
TGGTTAATTTCAAATAATATGTAAATTATGTGAACTACTTGTTAAATATAA
Found at i:33107580 original size:46 final size:46
Alignment explanation
Indices: 33107530--33107704 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
33107520 TGGTTGAGCA
*
33107530 TCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * *
33107576 TCCGAACTCGTTGAGTTGAGTAAGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33107621 CATCCGAACTCGTTGAGTTGAGTCCG-GTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33107668 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33107705 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 25 0.24
46 41 0.39
47 25 0.24
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33107685 original size:92 final size:93
Alignment explanation
Indices: 33107527--33107697 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
33107517 GGATGGTTGA
* *
33107527 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33107592 TGAGTAAGAGTTCGTGAGATGTAACTAG
66 TGAGTAAGAGTTCGTGAGATGTAACTAG
* *
33107620 GCATCCGAACTCGTTGAGTTGAGTCCG-GTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
**
33107684 TGAGTCCGAGTTCG
66 TGAGTAAGAGTTCG
33107698 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 46 0.64
93 26 0.36
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTAAGAGTTCGTGAGATGTAACTAG
Found at i:33113988 original size:39 final size:40
Alignment explanation
Indices: 33113858--33114021 Score: 249
Period size: 40 Copynumber: 4.1 Consensus size: 40
33113848 CGAATACACG
* * *
33113858 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
33113898 TTACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
33113938 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
33113977 TCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGGTATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
33114017 TCACT
1 TCACT
33114022 CTCAATTCTC
Statistics
Matches: 115, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.32
40 78 0.68
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Done.