Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 127 of 444
Found at i:33114002 original size:79 final size:80
Alignment explanation
Indices: 33113858--33114021 Score: 249
Period size: 79 Copynumber: 2.1 Consensus size: 80
33113848 CGAATACACG
* * *
33113858 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
33113923 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * *
33113938 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGGTACATCACTAGCACGAATGCTCTTTGGGA
1 TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* *
33114002 CTTAGCCCGGGTATA
66 CTTAGCCCGGATACA
33114017 TCACT
1 TCACT
33114022 CTCAATTCTC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
79 49 0.64
80 27 0.36
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:33115524 original size:47 final size:47
Alignment explanation
Indices: 33115446--33115904 Score: 688
Period size: 47 Copynumber: 9.8 Consensus size: 47
33115436 CCCTTCGGAA
* * * * *
33115446 CTTATCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33115493 CCTACCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
33115540 CTTATCACTTATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
33115587 CTTATCACATATATACGCTTCCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33115634 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33115681 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33115728 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33115775 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33115822 CTTATCACACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
33115869 CTTATCACATATATGCA-TGTTCACATTCATCACATT
1 CTTATCACATATATACACT-TTCACATTCATCACATT
33115905 AAATCCTAAA
Statistics
Matches: 378, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
46 1 0.00
47 377 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:33118431 original size:22 final size:20
Alignment explanation
Indices: 33118391--33118431 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
33118381 AGTCCTATTA
*
33118391 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
33118411 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
33118432 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:33119679 original size:23 final size:26
Alignment explanation
Indices: 33119639--33119688 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
33119629 GGAATTCGCA
33119639 CACACACACAGTGCCTC-TAATCATT
1 CACACACACAGTGCCTCTTAATCATT
*
33119664 CACACACA-AGTG-CTCTTATTCATT
1 CACACACACAGTGCCTCTTAATCATT
33119688 C
1 C
33119689 GTTATTACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 3 0.13
24 12 0.52
25 8 0.35
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (26 bp):
CACACACACAGTGCCTCTTAATCATT
Found at i:33119982 original size:39 final size:40
Alignment explanation
Indices: 33119852--33120015 Score: 240
Period size: 40 Copynumber: 4.1 Consensus size: 40
33119842 CGAATACACG
* * * *
33119852 TCACTAGCATGATTGCTCTTTGGGACCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
33119892 TTACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
33119932 TCACTAGCACGAATGCTCTTCAGGACTTAG-CCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
33119971 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
33120011 TCACT
1 TCACT
33120016 CTCAATTCTC
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 37 0.33
40 76 0.67
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:33119988 original size:79 final size:80
Alignment explanation
Indices: 33119852--33120015 Score: 240
Period size: 79 Copynumber: 2.1 Consensus size: 80
33119842 CGAATACACG
* * ** *
33119852 TCACTAGCATGATTGCTCTTTGGGACCTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCAGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
33119917 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* *
33119932 TCACTAGCACGAATGCTCTTCAGGACTTAG-CCGGGTACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCAGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* *
33119996 CTTAGCCCGGGTATA
66 CTTAGCCCGGATACA
33120011 TCACT
1 TCACT
33120016 CTCAATTCTC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 50 0.67
80 25 0.33
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
TCACTAGCACGAATGCTCTTCAGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:33121522 original size:47 final size:47
Alignment explanation
Indices: 33121444--33121901 Score: 679
Period size: 47 Copynumber: 9.8 Consensus size: 47
33121434 CCCTTCGGAA
* * * * *
33121444 CTTATCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33121491 CCTACCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
33121538 CTTATCACTTATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
33121585 CTTATCACATA-ATACGCTTCCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33121631 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33121678 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
33121725 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33121772 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33121819 CTTATCACACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
33121866 CTTATCACATATATGCA-TGTTCACATTCATCACATT
1 CTTATCACATATATACACT-TTCACATTCATCACATT
33121902 AAATCCTAAA
Statistics
Matches: 376, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 42 0.11
47 334 0.89
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:33124429 original size:22 final size:20
Alignment explanation
Indices: 33124389--33124429 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
33124379 AGTCCTATTA
*
33124389 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
33124409 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
33124430 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:33128338 original size:43 final size:45
Alignment explanation
Indices: 33128253--33128339 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 45
33128243 CTCCTATAAA
* * **
33128253 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTTG
*
33128298 AAAAAAGAATTT-AAAAAGA-GGAGAAGATAAACATAAGTTGTT
1 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTT
33128340 AGATTTACCC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 19 0.51
44 6 0.16
45 12 0.32
ACGTcount: A:0.53, C:0.02, G:0.22, T:0.23
Consensus pattern (45 bp):
AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTTG
Found at i:33133950 original size:39 final size:39
Alignment explanation
Indices: 33133891--33133973 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
33133881 TTCACACTTG
*
33133891 CATAGTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
1 CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
*
33133930 CATACTTTAGCCAAAACTCAACCAACTTATACCTAAGTT
1 CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
33133969 CATAC
1 CATAC
33133974 CAAAACTTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.40, C:0.27, G:0.06, T:0.28
Consensus pattern (39 bp):
CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
Found at i:33147093 original size:25 final size:25
Alignment explanation
Indices: 33147047--33147095 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
33147037 AAGGAAATAA
* *
33147047 AGAAAAATGGAAGGGAATTGAAGAG
1 AGAAAAATGGAAGAGAAGTGAAGAG
33147072 AGAAAAAT-GAGAGAGAAGTGAAGA
1 AGAAAAATGGA-AGAGAAGTGAAGA
33147096 TATGAGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.35, T:0.10
Consensus pattern (25 bp):
AGAAAAATGGAAGAGAAGTGAAGAG
Found at i:33152558 original size:24 final size:25
Alignment explanation
Indices: 33152526--33152589 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
33152516 TTTAATTACT
33152526 GGGCAAAGCCCTTTT-GGTAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTG
33152550 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTG
33152575 GGGCAAAGCCCTTTT
1 GGGCAAAGCCCTTTT
33152590 TCACTTCCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGGTAAACTG
Found at i:33152660 original size:20 final size:20
Alignment explanation
Indices: 33152635--33152672 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
33152625 ATATATGAAT
*
33152635 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
33152655 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
33152673 GTCAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:33152668 original size:11 final size:11
Alignment explanation
Indices: 33152635--33152684 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
33152625 ATATATGAAT
33152635 ATATCATGTGC
1 ATATCATGTGC
* *
33152646 ATTTCA--TAC
1 ATATCATGTGC
33152655 ATATCATGTGC
1 ATATCATGTGC
33152666 ATATCATGT-C
1 ATATCATGTGC
*
33152676 AAATCATGT
1 ATATCATGT
33152685 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:33156600 original size:40 final size:38
Alignment explanation
Indices: 33156545--33156684 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 38
33156535 AGATATAACG
* *
33156545 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTC-GGACTAAGCCCGGTT-TAGTA
*
33156585 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC-GGAC-TAAGCCC-GGTTTAGTA
* * *
33156625 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGG-TTTAGTA
* * *
33156664 ATTCGCACGAACGCCTTCGGA
1 ACTCGCACAAATGCCTTCGGA
33156685 TCTTAGTCCG
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.05
39 29 0.35
40 45 0.54
41 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTAAGCCCGGTTTAGTA
Found at i:33156653 original size:79 final size:79
Alignment explanation
Indices: 33156545--33156736 Score: 192
Period size: 79 Copynumber: 2.4 Consensus size: 79
33156535 AGATATAACG
* * ** *
33156545 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATC
* *
33156608 TTAACCCGGGTTTAGTA
63 TTAACCCGGATATAGTA
* *
33156625 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTAATTCGCACGAACGCCTTCGGATCTTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
** *
33156690 GTCCGGATATAGTC
66 ACCCGGATATAGTA
**
33156704 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
33156737 CATCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.57
80 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
ACCCGGATATAGTA
Found at i:33164643 original size:40 final size:38
Alignment explanation
Indices: 33164588--33164727 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 38
33164578 AGATATAACG
* *
33164588 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTC-GGACTAAGCCCGGTT-TAGTA
*
33164628 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC-GGAC-TAAGCCC-GGTTTAGTA
* * *
33164668 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGG-TTTAGTA
* * *
33164707 ATTCGCACGAACGCCTTCGGA
1 ACTCGCACAAATGCCTTCGGA
33164728 TCTTAGTCCG
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.05
39 29 0.35
40 45 0.54
41 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTAAGCCCGGTTTAGTA
Found at i:33164696 original size:79 final size:79
Alignment explanation
Indices: 33164588--33164779 Score: 192
Period size: 79 Copynumber: 2.4 Consensus size: 79
33164578 AGATATAACG
* * ** *
33164588 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATC
* *
33164651 TTAACCCGGGTTTAGTA
63 TTAACCCGGATATAGTA
* *
33164668 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTAATTCGCACGAACGCCTTCGGATCTTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
** *
33164733 GTCCGGATATAGTC
66 ACCCGGATATAGTA
**
33164747 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
33164780 CATCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.57
80 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
ACCCGGATATAGTA
Found at i:33167126 original size:50 final size:50
Alignment explanation
Indices: 33167072--33167308 Score: 303
Period size: 50 Copynumber: 4.7 Consensus size: 50
33167062 CTGGTATGCA
* * *
33167072 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * *
33167122 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * *
33167172 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACG
* *
33167223 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* *
33167273 TAGAAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
33167309 AACCGTCTTA
Statistics
Matches: 156, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
50 117 0.75
51 39 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:33167246 original size:101 final size:100
Alignment explanation
Indices: 33167072--33167305 Score: 324
Period size: 101 Copynumber: 2.3 Consensus size: 100
33167062 CTGGTATGCA
* * * ** **
33167072 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACATGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCGGGTACACATAGTAGCCTACACTT
* * *
33167137 AGTACTACACATGTGACCTAACCATCTGATATACG
66 AGTACTACACATGCGACCTAACAATCTGATACACG
* * *
33167172 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCTATCGGGTACGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-CAATCGGGTACACATAGTAGCCTACACT
*
33167237 TAGTACTACACATGCGACCTAACAATCTGGTACACG
65 TAGTACTACACATGCGACCTAACAATCTGATACACG
*
33167273 TAGAAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
33167306 TAAAACCGTC
Statistics
Matches: 117, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 32 0.27
101 85 0.73
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCGGGTACACATAGTAGCCTACACTT
AGTACTACACATGCGACCTAACAATCTGATACACG
Found at i:33172873 original size:40 final size:40
Alignment explanation
Indices: 33172814--33173062 Score: 266
Period size: 40 Copynumber: 6.2 Consensus size: 40
33172804 CAATTGAACG
* * * * **
33172814 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
* ** * **
33172854 ATATCCGGGTTAAGACCCGAAGGCCGTTGTGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TT
* *
33172894 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
* * *
33172934 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
* * *
33172974 CTATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
* * *
33173014 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
*
33173054 CTATCCGGG
1 ATATCCGGG
33173063 AAGGCATTTG
Statistics
Matches: 171, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 169 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
Found at i:33172952 original size:80 final size:80
Alignment explanation
Indices: 33172816--33173051 Score: 294
Period size: 80 Copynumber: 3.0 Consensus size: 80
33172806 ATTGAACGAT
* * ** * ** * * * *
33172816 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCGT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAGT
*
33172881 TGTGCTAGT-GACCAC
66 TGTGCAAGTCGACC-C
*
33172896 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAGT
** *
33172961 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
33172976 ATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAGT
33173041 TGTGCAAGTCG
66 TGTGCAAGTCG
33173052 TTCTATCCGG
Statistics
Matches: 138, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 136 0.99
81 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAGT
TGTGCAAGTCGACCC
Found at i:33173052 original size:80 final size:80
Alignment explanation
Indices: 33172900--33173058 Score: 318
Period size: 80 Copynumber: 2.0 Consensus size: 80
33172890 GACCACATCC
33172900 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
33172965 CAAGTCGTTCTATCT
66 CAAGTCGTTCTATCT
33172980 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
33173045 CAAGTCGTTCTATC
66 CAAGTCGTTCTATC
33173059 CGGGAAGGCA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
CAAGTCGTTCTATCT
Found at i:33173068 original size:30 final size:30
Alignment explanation
Indices: 33173032--33173092 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
33173022 GCTAATACCC
33173032 GAAGGCATTTGTGCAAGTCGTTCTATCCGG
1 GAAGGCATTTGTGCAAGTCGTTCTATCCGG
33173062 GAAGGCATTTGTGCAAGTCGTTCTATCCGG
1 GAAGGCATTTGTGCAAGTCGTTCTATCCGG
33173092 G
1 G
33173093 CTAAGGAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.30
Consensus pattern (30 bp):
GAAGGCATTTGTGCAAGTCGTTCTATCCGG
Found at i:33179264 original size:36 final size:36
Alignment explanation
Indices: 33179223--33179295 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
33179213 AGCAAGCTAA
33179223 TCACCCATCATTAGATTTGATTCCTTCTACTTTTTC
1 TCACCCATCATTAGATTTGATTCCTTCTACTTTTTC
33179259 TCACCCATCATTAGATTTGATTCCTTCTACTTTTTC
1 TCACCCATCATTAGATTTGATTCCTTCTACTTTTTC
33179295 T
1 T
33179296 ATCTCTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.19, C:0.27, G:0.05, T:0.48
Consensus pattern (36 bp):
TCACCCATCATTAGATTTGATTCCTTCTACTTTTTC
Found at i:33183365 original size:31 final size:31
Alignment explanation
Indices: 33183327--33183431 Score: 160
Period size: 31 Copynumber: 3.4 Consensus size: 31
33183317 ACGGTTACTA
33183327 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
33183358 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
33183389 GGCCGAAGCC-TTTCATAAAACA-ATTCACTG
1 GGCCGAAGCCTTTTCATAAATCATA-TCACTG
*
33183419 GGCTGAAGCCTTT
1 GGCCGAAGCCTTT
33183432 ACTGTAAACG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
29 1 0.01
30 25 0.37
31 42 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:33183502 original size:42 final size:42
Alignment explanation
Indices: 33183455--33183546 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
33183445 TGGCCCATAG
* *** * *
33183455 GCCCATTTCAATATCACATGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
*
33183497 GCCCATTTCAATATCATATGAAATACCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
33183539 GCCCATTT
1 GCCCATTT
33183547 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
Found at i:33184595 original size:48 final size:48
Alignment explanation
Indices: 33184519--33185286 Score: 1302
Period size: 48 Copynumber: 16.0 Consensus size: 48
33184509 TGTTACAACA
*
33184519 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
* *
33184567 TTCAGATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33184615 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33184663 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
** *
33184711 TTTTCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33184759 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33184807 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
* *
33184855 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
* * *
33184903 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
* *
33184951 CTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33184999 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33185047 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33185095 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
*
33185143 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
** *
33185191 TTTTCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
* *
33185239 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
33185287 ATATATATAT
Statistics
Matches: 678, Mismatches: 42, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 678 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
Found at i:33187201 original size:5 final size:5
Alignment explanation
Indices: 33187188--33187220 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
33187178 AAGATGAACA
*
33187188 TTTTT TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTT
33187221 CTTCCATTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:33188763 original size:40 final size:40
Alignment explanation
Indices: 33188714--33188983 Score: 486
Period size: 40 Copynumber: 6.8 Consensus size: 40
33188704 AGCATGATTT
* * *
33188714 CTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
33188754 CTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
33188794 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
33188834 CTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
33188874 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
33188914 CTCTTCGGAACTTAGTTCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
33188954 CTCTTCGGAACTTAGTCCGGATACATCACT
1 CTCTTCGGAACTTAGTCCGGATACATCACT
33188984 CTCAATTCTC
Statistics
Matches: 223, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 223 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
Found at i:33199271 original size:28 final size:29
Alignment explanation
Indices: 33199239--33199337 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
33199229 ATAATAAGCC
*
33199239 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
33199267 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
33199295 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
33199324 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33199338 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:33201494 original size:48 final size:48
Alignment explanation
Indices: 33201419--33202177 Score: 1185
Period size: 48 Copynumber: 16.0 Consensus size: 48
33201409 TGTTACAACA
* * *
33201419 TTCACATTAGCCATTCGGCTTTCCCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33201467 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
33201515 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
33201563 TTTTCATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
33201611 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** *
33201659 TTTTCATTAGCCATTCGGCTTTACCACGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33201707 TTCACATTAGCCA---------ACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
33201746 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
33201794 TTCACATTCGCCATTTGCCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
33201842 CTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33201890 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
33201938 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
33201986 TTTACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
33202034 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** * *
33202082 TTTTCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33202130 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33202178 ATATTTATCT
Statistics
Matches: 649, Mismatches: 53, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
39 38 0.06
48 611 0.94
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:33204655 original size:26 final size:26
Alignment explanation
Indices: 33204584--33204757 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
33204574 GGGCTGTCAC
*
33204584 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
33204609 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
33204634 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
33204660 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
33204685 AACTGGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
33204711 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
33204737 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33204758 GCACTTCCTC
Statistics
Matches: 142, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
25 58 0.41
26 84 0.59
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:33204659 original size:51 final size:51
Alignment explanation
Indices: 33204584--33204757 Score: 296
Period size: 51 Copynumber: 3.4 Consensus size: 51
33204574 GGGCTGTCAC
**
33204584 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
33204634 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
*
33204685 AACTGGGGCATAAGCCCTTTTCGATAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
*
33204737 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33204758 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
50 10 0.08
51 73 0.62
52 35 0.30
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:33204832 original size:20 final size:20
Alignment explanation
Indices: 33204807--33204893 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
33204797 TTATGAATAC
33204807 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
33204827 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
33204847 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
33204867 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
33204887 ATCATGT
1 ATCATGT
33204894 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:33205662 original size:27 final size:27
Alignment explanation
Indices: 33205601--33205664 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
33205591 GGCGTATTCA
33205601 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
33205628 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
33205655 TCTTTTTACC
1 TCATTTTACC
33205665 TATTAGAGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:33205706 original size:27 final size:27
Alignment explanation
Indices: 33205654--33205706 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
33205644 GGGCTTTACG
* *
33205654 GTCTTTTTACCTATTAGAGGTATTTTA
1 GTCTTTTCACCTATAAGAGGTATTTTA
*
33205681 GTCTTTTCATCCTATAAG-GGTGTTTT
1 GTCTTTTCA-CCTATAAGAGGTATTTT
33205707 GGTAAATCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.19, C:0.13, G:0.17, T:0.51
Consensus pattern (27 bp):
GTCTTTTCACCTATAAGAGGTATTTTA
Found at i:33205766 original size:27 final size:27
Alignment explanation
Indices: 33205698--33206072 Score: 145
Period size: 27 Copynumber: 13.9 Consensus size: 27
33205688 CATCCTATAA
* * * *
33205698 GGGTGTTTTGGTAAATCTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* **
33205725 GGGTATTTCT-ATAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
33205752 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* * * *
33205778 AAGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
*
33205806 TGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
* * **
33205833 GGGTGTTTTGGTAATTCTACCCTAT-AG
1 GGGTATTTTGGTAATTTTA-CAAATCAG
** * *
33205860 GGGTATTTCAGTAATTTCAC-AATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
**** ** * *
33205886 GGGTAAAACGGTAATTTTGTAAATTAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* *** * **
33205913 GAGTAAAATAGTAATTTTGTAAATC-G
1 GGGTATTTTGGTAATTTTACAAATCAG
***** * * *
33205939 AGGGTAAAACAGTAATTCTATAAAT-TG
1 -GGGTATTTTGGTAATTTTACAAATCAG
* *
33205966 AGGGTACTTTGGTAATTTTTACAAGTC-G
1 -GGGTATTTTGGTAA-TTTTACAAATCAG
**
33205994 AGGGTATTTCAGTAATTTTACAAATCAGG
1 -GGGTATTTTGGTAATTTTACAAATCA-G
* * *
33206023 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
*
33206050 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
33206073 CCAAAGGTAT
Statistics
Matches: 270, Mismatches: 63, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 18 0.07
27 201 0.74
28 48 0.18
29 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:33205998 original size:28 final size:27
Alignment explanation
Indices: 33205921--33206391 Score: 194
Period size: 27 Copynumber: 17.3 Consensus size: 27
33205911 AAGAGTAAAA
** ***
33205921 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTTTACAAATCGAGGGTATTT
* * * * *
33205948 CAGTAATTCTATAAATTGAGGGTACTT
1 TAGTAATTTTACAAATCGAGGGTATTT
* *
33205975 TGGTAATTTTTACAAGTCGAGGGTATTT
1 TAGTAA-TTTTACAAATCGAGGGTATTT
* *
33206003 CAGTAATTTTACAAATCAGGGGGTATTT
1 TAGTAATTTTACAAATC-GAGGGTATTT
* *
33206031 TAGTAATTTTACAAACCAAGGGTATTT
1 TAGTAATTTTACAAATCGAGGGTATTT
* * *
33206058 TAGTAATTTTACAAACCAAAGGTATTT
1 TAGTAATTTTACAAATCGAGGGTATTT
* ** ***
33206085 CAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTTTACAAATCGAGGGTATTT
* * ** ** ***
33206112 TGGTAATTCTGTAAATTAAGGGTAAGA
1 TAGTAATTTTACAAATCGAGGGTATTT
** * * ***
33206139 CGGTAATTCTAAAAATCGAGGGTAAAA
1 TAGTAATTTTACAAATCGAGGGTATTT
* * * * ***
33206166 TGGTAATTCTATAAATAGAGGGTAAAA
1 TAGTAATTTTACAAATCGAGGGTATTT
** * ***
33206193 CGGTAATTCTATC-AATCGAGGGTAAAA
1 TAGTAATTTTA-CAAATCGAGGGTATTT
* * **
33206220 TGGTAATTCTATCTTA-C-AGGAGTATTT
1 TAGTAATTTTA-CAAATCGAGG-GTATTT
* *
33206247 CAGTAATTTTACAAAATCAAGGGTATTT
1 TAGTAATTTTAC-AAATCGAGGGTATTT
*
33206275 TAGTAATTTTGCAAA-CTGAGGGTATTT
1 TAGTAATTTTACAAATC-GAGGGTATTT
** *
33206302 CGGTAATTTTACAAATCGAGGATATTT
1 TAGTAATTTTACAAATCGAGGGTATTT
** * * * *
33206329 GGGTAATTTTATAAATTGGGGGTACTT
1 TAGTAATTTTACAAATCGAGGGTATTT
* *
33206356 TGGTAATTTTACAAGTCGAGGGTATTT
1 TAGTAATTTTACAAATCGAGGGTATTT
*
33206383 CAGTAATTT
1 TAGTAATTT
33206392 GGTAAACTAA
Statistics
Matches: 353, Mismatches: 81, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
26 5 0.01
27 282 0.80
28 63 0.18
29 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.36
Consensus pattern (27 bp):
TAGTAATTTTACAAATCGAGGGTATTT
Found at i:33206382 original size:54 final size:54
Alignment explanation
Indices: 33205697--33206391 Score: 218
Period size: 54 Copynumber: 12.8 Consensus size: 54
33205687 TCATCCTATA
* * * * * ** *
33205697 AGGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTA-TAATTTTGTAAA-TC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC-AGTAATTTTACAAACTG
* * * * * *
33205750 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAAC-C
1 A-GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
* * * ** * * *
33205804 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTGTTTTGGTAATTCTAC--CCTAT
1 AG-GGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTTACAAACT-G
* * * *** * ** * *
33205858 AGGGGTATTTCAGTAATTTCAC-AATCAAGGGTAAAACGGTAATTTTGTAAATTA
1 A-GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
* ** * ** *** * * *
33205912 AGAGTAAAAT-AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATTG
1 AGGGT-ATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
* *
33205966 AGGGTACTTT-GGTAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAG
1 AGGGTA-TTTCGGTAA-TTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-CTG
* ** * * * **
33206022 GGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
* * ** ** * * ** * *
33206076 AAGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAAT-GGTAATTCTGTAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGT-ATTTCAGTAATTTTACAAACTG
*** * * ** * * *
33206130 AGGGTAAGACGGTAATTCTAAAAATCGAGGGTAAAAT-GGTAATTCTATAAA-TAG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGT-ATTTCAGTAATTTTACAAACT-G
*** * ** * * **
33206184 AGGGTAAAACGGTAATTCTATC-AATCGAGGGTAAAAT-GGTAATTCTATCTTAC--
1 AGGGTATTTCGGTAATTTTA-CAAATCGAGGGT-ATTTCAGTAATTTTA-CAAACTG
* * * *
33206237 AGGAGTATTTCAGTAATTTTACAAAATCAAGGGTATTTTAGTAATTTTGCAAACTG
1 AGG-GTATTTCGGTAATTTTAC-AAATCGAGGGTATTTCAGTAATTTTACAAACTG
* ** * *
33206293 AGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
* *
33206347 GGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTCAGTAATTT
1 AGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
33206392 GGTAAACTAA
Statistics
Matches: 490, Mismatches: 123, Indels: 57
0.73 0.18 0.09
Matches are distributed among these distances:
52 1 0.00
53 34 0.07
54 338 0.69
55 104 0.21
56 13 0.03
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTG
Found at i:33208766 original size:68 final size:68
Alignment explanation
Indices: 33208619--33208766 Score: 149
Period size: 68 Copynumber: 2.1 Consensus size: 68
33208609 AGCCGATTTG
* * * * *
33208619 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
33208684 TATC
65 TATA
* *
33208688 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
33208750 ATATAGTA
62 ATATA-TA
33208758 TCTCGTAGC
1 TCTCGTAGC
33208767 CTTGTTGTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
68 27 0.41
69 7 0.11
70 6 0.09
71 26 0.39
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:33216225 original size:68 final size:68
Alignment explanation
Indices: 33216078--33216232 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
33216068 AGCCGATTTG
* * * * *
33216078 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
33216143 TATC
65 TATA
* *
33216147 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
33216209 ATATAGTA
62 ATATA-TA
33216217 TCTCGTAGCT-TCTTGT
1 TCTCGTAGCTCTCTTGT
33216233 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
67 6 0.08
68 28 0.38
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:33218854 original size:39 final size:40
Alignment explanation
Indices: 33218755--33218904 Score: 125
Period size: 40 Copynumber: 3.8 Consensus size: 40
33218745 AATTGAATGA
* * *
33218755 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
33218795 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
33218836 -AT-CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
33218874 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33218905 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
37 3 0.03
38 5 0.06
39 24 0.27
40 53 0.59
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:33218918 original size:40 final size:40
Alignment explanation
Indices: 33218792--33218920 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
33218782 ATGCTGGAAA
* * * *
33218792 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
33218832 CTACAT-CGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
33218871 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
33218911 TTATATCCGG
1 TTATATCCGG
33218921 TTATATTCCG
Statistics
Matches: 69, Mismatches: 17, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
39 30 0.43
40 39 0.57
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:33226818 original size:40 final size:40
Alignment explanation
Indices: 33226733--33226883 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
33226723 AATTGAATGA
* * *
33226733 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
33226773 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
33226814 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
33226853 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33226884 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:33226897 original size:40 final size:40
Alignment explanation
Indices: 33226770--33226899 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
33226760 ATGCTGGAAA
* * * *
33226770 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
33226810 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
33226850 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
33226890 TTATATCCGG
1 TTATATCCGG
33226900 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:33228958 original size:184 final size:184
Alignment explanation
Indices: 33228644--33229012 Score: 657
Period size: 184 Copynumber: 2.0 Consensus size: 184
33228634 TATAATTAAT
* *
33228644 CGTTCTTGAAACTAACTATTATCCTGATGAAGGAAAGTGTACCTATTGAATAGTAGTATAGCTTT
1 CGTTCTTGAAACTAACTATTATCATGATGAAGGAAAGTGTACCTATCGAATAGTAGTATAGCTTT
* *
33228709 AGCAAGACCGGATTGTTGAACCCAAAGGAACCAATAGTACTAGTAATTACCTTCTTTTTATTGTC
66 AGCAAGACCGAATTGTTGAACCCAAAGGAACCAAGAGTACTAGTAATTACCTTCTTTTTATTGTC
33228774 TAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATTACTAAACTAAGAGTG
131 TAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATTACTAAACTAAGAGTG
* *
33228828 CGTTTTTGAAACTAACTATTATCATGATGAAGGCAAGTGTACCTATCGAATAGTAGTATAGCTTT
1 CGTTCTTGAAACTAACTATTATCATGATGAAGGAAAGTGTACCTATCGAATAGTAGTATAGCTTT
* * *
33228893 AGCAGGATCGAATTGTTGAACCCAAATGAACCAAGAGTACTAGTAATTACCTTCTTTTTATTGTC
66 AGCAAGACCGAATTGTTGAACCCAAAGGAACCAAGAGTACTAGTAATTACCTTCTTTTTATTGTC
33228958 TAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATTACTAAACTAAGAGTG
131 TAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATTACTAAACTAAGAGTG
33229012 C
1 C
33229013 ACAGAGAGAA
Statistics
Matches: 176, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
184 176 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (184 bp):
CGTTCTTGAAACTAACTATTATCATGATGAAGGAAAGTGTACCTATCGAATAGTAGTATAGCTTT
AGCAAGACCGAATTGTTGAACCCAAAGGAACCAAGAGTACTAGTAATTACCTTCTTTTTATTGTC
TAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATTACTAAACTAAGAGTG
Found at i:33234962 original size:24 final size:24
Alignment explanation
Indices: 33234694--33234960 Score: 462
Period size: 24 Copynumber: 11.1 Consensus size: 24
33234684 GCAAAGACCA
33234694 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234718 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234742 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
33234766 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234790 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234814 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234838 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
33234862 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
33234886 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33234910 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
33234934 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
33234958 TAT
1 TAT
33234961 AGTCACATTC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 237 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:33242950 original size:24 final size:24
Alignment explanation
Indices: 33242730--33242948 Score: 375
Period size: 24 Copynumber: 9.1 Consensus size: 24
33242720 GCAAAGACCA
33242730 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33242754 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
33242778 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
33242802 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33242826 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
33242850 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
33242874 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
33242898 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
33242922 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
33242946 TAT
1 TAT
33242949 AGTCACATTC
Statistics
Matches: 189, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 189 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:33246120 original size:13 final size:13
Alignment explanation
Indices: 33246102--33246136 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
33246092 CCAACCACAT
33246102 GCCCGTGTGACCA
1 GCCCGTGTGACCA
33246115 GCCCGTGTGACCA
1 GCCCGTGTGACCA
*
33246128 GCCAGTGTG
1 GCCCGTGTG
33246137 CCCTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.17
Consensus pattern (13 bp):
GCCCGTGTGACCA
Found at i:33254579 original size:22 final size:22
Alignment explanation
Indices: 33254549--33254596 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
33254539 AGCTTGCCGT
33254549 TTCAACTCGCATA-AGCTTACTA
1 TTCAACTCG-ATAGAGCTTACTA
*
33254571 TTCAGCTCGATAGAGCTTACTA
1 TTCAACTCGATAGAGCTTACTA
33254593 TTCA
1 TTCA
33254597 TTAGCTCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (22 bp):
TTCAACTCGATAGAGCTTACTA
Found at i:33263426 original size:19 final size:19
Alignment explanation
Indices: 33263402--33263443 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
33263392 ATGAGCCCAA
*
33263402 TATTATATTTATTA-GTTAT
1 TATTAT-TTTATTATCTTAT
33263421 TATTATTTTATTATCTTAT
1 TATTATTTTATTATCTTAT
33263440 TATT
1 TATT
33263444 CTGAGTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTATTTTATTATCTTAT
Found at i:33264417 original size:30 final size:29
Alignment explanation
Indices: 33264361--33264427 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
33264351 ACCCTGAGCC
* *
33264361 CAATAA-AAAGATGATAGCAAGGAAAGAA
1 CAATAACAAAAATGATAACAAGGAAAGAA
*
33264389 CAATAACAAAAATGAATAACAATGAAAGAA
1 CAATAACAAAAATG-ATAACAAGGAAAGAA
*
33264419 -AGTAACAAA
1 CAATAACAAA
33264428 GAAGAAGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 13 0.39
ACGTcount: A:0.64, C:0.09, G:0.15, T:0.12
Consensus pattern (29 bp):
CAATAACAAAAATGATAACAAGGAAAGAA
Found at i:33265740 original size:2 final size:2
Alignment explanation
Indices: 33265735--33265760 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
33265725 GTTTGAGAGA
33265735 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
33265761 TGCATATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33274316 original size:41 final size:41
Alignment explanation
Indices: 33274271--33274388 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33274261 TGAAAGATAA
33274271 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33274312 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33274342 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33274383 ATGTAG
1 ATGTAG
33274389 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33274327 original size:71 final size:71
Alignment explanation
Indices: 33274239--33274402 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33274229 GAGATGTATC
33274239 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33274304 AGGACA
66 AGGACA
33274310 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33274375 AGGACA
66 AGGACA
33274381 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33274403 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33281425 original size:41 final size:41
Alignment explanation
Indices: 33281380--33281497 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33281370 TGAAAGATAA
33281380 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33281421 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33281451 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33281492 ATGTAG
1 ATGTAG
33281498 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33281436 original size:71 final size:71
Alignment explanation
Indices: 33281348--33281511 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33281338 GAGATGTATC
33281348 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33281413 AGGACA
66 AGGACA
33281419 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33281484 AGGACA
66 AGGACA
33281490 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33281512 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33293104 original size:17 final size:17
Alignment explanation
Indices: 33293079--33293114 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
33293069 GTTCAGAAGA
33293079 ATTTAATACTTTAAAGG
1 ATTTAATACTTTAAAGG
*
33293096 ATTTGATACTTTAAAGG
1 ATTTAATACTTTAAAGG
33293113 AT
1 AT
33293115 AAATTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.42
Consensus pattern (17 bp):
ATTTAATACTTTAAAGG
Found at i:33300492 original size:8 final size:8
Alignment explanation
Indices: 33300467--33300518 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
33300457 TTGAAATAGC
*
33300467 AAAAGCTG
1 AAAAGCCG
33300475 AAAA-CCG
1 AAAAGCCG
*
33300482 AAAAGCTG
1 AAAAGCCG
*
33300490 AAAAGTCG
1 AAAAGCCG
*
33300498 AAAAGCCA
1 AAAAGCCG
33300506 AAAAGCCG
1 AAAAGCCG
33300514 AAAAG
1 AAAAG
33300519 TAGCCTGTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 6 0.17
8 30 0.83
ACGTcount: A:0.56, C:0.17, G:0.21, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:33300501 original size:16 final size:16
Alignment explanation
Indices: 33300467--33300518 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
33300457 TTGAAATAGC
33300467 AAAAGCTGAAAA-CCG
1 AAAAGCTGAAAAGCCG
*
33300482 AAAAGCTGAAAAGTCG
1 AAAAGCTGAAAAGCCG
**
33300498 AAAAGCCAAAAAGCCG
1 AAAAGCTGAAAAGCCG
33300514 AAAAG
1 AAAAG
33300519 TAGCCTGTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 12 0.38
16 20 0.62
ACGTcount: A:0.56, C:0.17, G:0.21, T:0.06
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCG
Found at i:33307005 original size:27 final size:27
Alignment explanation
Indices: 33306975--33307035 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
33306965 AACTCTCCTG
*
33306975 TGTTTACCGTCTC-GATGGATTATCCCA
1 TGTTTACCGTCTCAG-TGGACTATCCCA
*
33307002 TGTTTATCGTCTCAGTGGACTATCCCA
1 TGTTTACCGTCTCAGTGGACTATCCCA
33307029 TGTTTAC
1 TGTTTAC
33307036 TGACTCTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (27 bp):
TGTTTACCGTCTCAGTGGACTATCCCA
Found at i:33308195 original size:16 final size:16
Alignment explanation
Indices: 33308174--33308205 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33308164 TCTTAGTAGC
33308174 ACCAACTCTCTACTTT
1 ACCAACTCTCTACTTT
33308190 ACCAACTCTCTACTTT
1 ACCAACTCTCTACTTT
33308206 TTTTAACTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (16 bp):
ACCAACTCTCTACTTT
Found at i:33330245 original size:8 final size:8
Alignment explanation
Indices: 33330232--33330258 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
33330222 GTACAAAAAT
33330232 GTTTGTCA
1 GTTTGTCA
33330240 GTTTGTCA
1 GTTTGTCA
33330248 GTTTGTCA
1 GTTTGTCA
33330256 GTT
1 GTT
33330259 CACCCAGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.26, T:0.52
Consensus pattern (8 bp):
GTTTGTCA
Found at i:33336259 original size:20 final size:19
Alignment explanation
Indices: 33336232--33336300 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 19
33336222 GAGATAAAGA
33336232 AAGTAAATGCAATGGCAAGT
1 AAGTAAATGCAATGG-AAGT
*
33336252 ATGTAAATGCAATGGACAGT
1 AAGTAAATGCAATGGA-AGT
* *
33336272 AAGTAAATACAATGAAAAGT
1 AAGTAAATGCAATG-GAAGT
33336292 AAGTAAATG
1 AAGTAAATG
33336301 AAAGGGGTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.02
20 40 0.95
21 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (19 bp):
AAGTAAATGCAATGGAAGT
Found at i:33342669 original size:37 final size:37
Alignment explanation
Indices: 33342616--33342718 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
33342606 CGAATAGTCC
* *
33342616 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
33342653 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
33342690 CCACACGTAGTCATCAGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
33342719 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:33342917 original size:48 final size:48
Alignment explanation
Indices: 33342859--33343342 Score: 833
Period size: 48 Copynumber: 10.0 Consensus size: 48
33342849 ATATACACAC
* * *
33342859 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
* *
33342907 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
33342955 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
33343005 ATCTCGTACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
**
33343053 ATCTTGTACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343101 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343149 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343197 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343245 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343293 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
33343341 AT
1 AT
33343343 ATATTTATCT
Statistics
Matches: 423, Mismatches: 11, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
48 376 0.89
50 47 0.11
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:33346539 original size:20 final size:20
Alignment explanation
Indices: 33346511--33346564 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
33346501 TATTTGAGTT
* *
33346511 AAAGAAAGTAAATGCAATGG
1 AAAGTAAGTAAATGCAATGA
33346531 AAAGTAAGTAAATGCAATGA
1 AAAGTAAGTAAATGCAATGA
33346551 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
33346565 AAAGGGGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.56, C:0.04, G:0.22, T:0.19
Consensus pattern (20 bp):
AAAGTAAGTAAATGCAATGA
Found at i:33347320 original size:54 final size:54
Alignment explanation
Indices: 33347233--33347349 Score: 189
Period size: 54 Copynumber: 2.2 Consensus size: 54
33347223 CAAGGCACAA
* *
33347233 GCCCGTGTGCTAGGCCGTGTCCTTCACATGGCTGAGACACATGGTCGTGTCTCT
1 GCCCGTGTGCTAGGCCGTGTCCTTCACACGGCTGAGACACACGGTCGTGTCTCT
* *
33347287 GCCCGTGTTCTAGGCCGTGTCCTTCACACGGCTGGGACACACGGTCGTGTCTCT
1 GCCCGTGTGCTAGGCCGTGTCCTTCACACGGCTGAGACACACGGTCGTGTCTCT
*
33347341 GCCCATGTG
1 GCCCGTGTG
33347350 TTTACTACTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.12, C:0.32, G:0.30, T:0.26
Consensus pattern (54 bp):
GCCCGTGTGCTAGGCCGTGTCCTTCACACGGCTGAGACACACGGTCGTGTCTCT
Found at i:33348273 original size:46 final size:44
Alignment explanation
Indices: 33348212--33348380 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 44
33348202 TTCATAGCCT
* *
33348212 ATGCATATCCTAGACATGTCTTACACTAGCTTACATCTCGAGGTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTCGAGGTG
* * * **
33348257 AATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTCTCAATGCCG
1 -ATGCATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGA-GGTG
* * *
33348304 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAT-GTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGG-TG
33348352 ATGCATGTCCCAGACATGTCTTACACTAG
1 ATGCATGTCCCAGACATGTCTTACACTAG
33348381 GTCACACAAG
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
46 49 0.49
47 30 0.30
48 20 0.20
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGTG
Found at i:33348359 original size:47 final size:44
Alignment explanation
Indices: 33348165--33348380 Score: 154
Period size: 46 Copynumber: 4.7 Consensus size: 44
33348155 GTAAGTTGCT
* * *
33348165 GATGCCATGTCCCAGACATGGTCTTACACT-GACACATTTC-ATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCGTCTCAAT-GCC
* * * * * **
33348211 TATGCATATCCTAGACATGTCTTACACTAGCTTACATCTCGA-GGT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCAATGCC
33348256 GAATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTCTCAATGCC
1 G-ATGCATGTCCCAGACATGTCTTACACTA--GCTCGTCTCAATGCC
* *
33348303 GATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCAT-AATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCAA--T-GCC
33348351 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
33348381 GTCACACAAG
Statistics
Matches: 139, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
44 11 0.08
45 18 0.13
46 60 0.43
47 31 0.22
48 19 0.14
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAATGCC
Found at i:33355927 original size:47 final size:47
Alignment explanation
Indices: 33355863--33355986 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 47
33355853 TTCATAGCCG
33355863 ATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTC-TCAATGT-C-A
1 ATGCATGTCCCAGACATGTCTTACACTAGCGCTC-TCAT-AATGTGCTA
* *
33355909 ATGCCATGTCCCAAACATGGTCTTACACT-G-GCTCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCGCTCTCATAATGT-GCTA
33355957 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
33355987 TCACACAAGT
Statistics
Matches: 67, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
45 7 0.10
46 18 0.27
47 29 0.43
48 13 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCGCTCTCATAATGTGCTA
Found at i:33360356 original size:25 final size:25
Alignment explanation
Indices: 33360310--33360358 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
33360300 AAGGAAATAA
* *
33360310 AGAAAAATGGAAGGGAATTGAAGAG
1 AGAAAAATGGAAGAGAAGTGAAGAG
33360335 AGAAAAAT-GAGAGAGAAGTGAAGA
1 AGAAAAATGGA-AGAGAAGTGAAGA
33360359 TATGAGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.35, T:0.10
Consensus pattern (25 bp):
AGAAAAATGGAAGAGAAGTGAAGAG
Found at i:33365908 original size:20 final size:20
Alignment explanation
Indices: 33365883--33365920 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
33365873 ATATATGAAT
*
33365883 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
33365903 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
33365921 GTCAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:33365916 original size:11 final size:11
Alignment explanation
Indices: 33365883--33365932 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
33365873 ATATATGAAT
33365883 ATATCATGTGC
1 ATATCATGTGC
* *
33365894 ATTTCA--TAC
1 ATATCATGTGC
33365903 ATATCATGTGC
1 ATATCATGTGC
33365914 ATATCATGT-C
1 ATATCATGTGC
*
33365924 AAATCATGT
1 ATATCATGT
33365933 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:33369837 original size:39 final size:38
Alignment explanation
Indices: 33369785--33369923 Score: 154
Period size: 39 Copynumber: 3.6 Consensus size: 38
33369775 CGATATAACG
* *
33369785 ACTCGCTCAAATGCCTTCGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGGTT-TAGTA
*
33369824 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC-GGAC-TAAGCCC-GGTTTAGTA
* * *
33369864 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGG-TTTAGTA
* *
33369903 ACTCGCACGAACGCCTTCGGA
1 ACTCGCACAAATGCCTTCGGA
33369924 TCTTAGTCCG
Statistics
Matches: 85, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
38 4 0.05
39 46 0.54
40 29 0.34
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTAAGCCCGGTTTAGTA
Found at i:33369892 original size:79 final size:79
Alignment explanation
Indices: 33369785--33369975 Score: 208
Period size: 79 Copynumber: 2.4 Consensus size: 79
33369775 CGATATAACG
* * ** *
33369785 ACTCGCTCAAATGCCTTCGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CT
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATCT
* *
33369848 TAACCCGGGTTTAGTA
64 TAACCCGGATATAGTA
*
33369864 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
** *
33369929 GTCCGGATATAGTC
66 ACCCGGATATAGTA
**
33369943 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
33369976 CATCATTCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 72 0.76
80 20 0.21
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
ACCCGGATATAGTA
Found at i:33369975 original size:40 final size:39
Alignment explanation
Indices: 33369785--33369975 Score: 174
Period size: 40 Copynumber: 4.8 Consensus size: 39
33369775 CGATATAACG
* **
33369785 ACTCGCTCAAATGCCTTC-GGACAAAGCCCGG-TTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
33369824 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATTTAGTA
*
33369864 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
33369903 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTA
**
33369943 ACTTAACACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
33369976 CATCATTCAA
Statistics
Matches: 125, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 44 0.35
40 70 0.56
41 9 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:33376304 original size:40 final size:39
Alignment explanation
Indices: 33376259--33376387 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 39
33376249 CGGAATATAA
33376259 CGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGCC
* * * *
33376299 CGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
33376339 CGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGCC
33376379 CGGATATAA
1 CGGATATAA
33376388 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 68 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGCC
Found at i:33376402 original size:40 final size:40
Alignment explanation
Indices: 33376274--33376424 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
33376264 ATAACCATGT
* * *
33376274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
33376314 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
33376354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
33376394 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
33376425 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:33376408 original size:80 final size:79
Alignment explanation
Indices: 33376274--33376422 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
33376264 ATAACCATGT
* *
33376274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
33376339 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
33376354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
33376417 CCGGAT
64 CCGGAT
33376423 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:33384227 original size:40 final size:39
Alignment explanation
Indices: 33384182--33384311 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
33384172 CGGAATATAA
33384182 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
33384222 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
33384262 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
33384302 CCGGATATAA
1 CCGGATATAA
33384312 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:33384326 original size:40 final size:40
Alignment explanation
Indices: 33384198--33384349 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
33384188 ATAACCATGT
* * *
33384198 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
33384238 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
33384278 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
33384318 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
33384350 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:33384332 original size:80 final size:80
Alignment explanation
Indices: 33384198--33384347 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
33384188 ATAACCATGT
*
33384198 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
33384262 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
33384278 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
33384341 CCCGGAT
64 CCCGGAT
33384348 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:33386105 original size:43 final size:43
Alignment explanation
Indices: 33386041--33386136 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 43
33386031 GTGATAAAAG
*
33386041 CGCCGCTAAAGGTTAAGGCTTTTAGCGGCGCTTTTC-CCACAAA
1 CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGC-TTTCACCACAAA
* *
33386084 CGCCGCTAAAGGTCAATGCTTTTAGCGGCGCTTTCACTACAAA
1 CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTCACCACAAA
33386127 CGCCGCTAAA
1 CGCCGCTAAA
33386137 TTTGGCAGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 4 0.08
43 45 0.92
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTCACCACAAA
Found at i:33386222 original size:31 final size:31
Alignment explanation
Indices: 33386187--33386267 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
33386177 CTTCCTGCAT
* *
33386187 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
33386218 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
33386249 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
33386268 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:33386558 original size:21 final size:21
Alignment explanation
Indices: 33386508--33386558 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
33386498 CCATCGCTCG
*
33386508 TGCCTCTGCCTCTCTCGCTAC
1 TGCCTCTGCCTCCCTCGCTAC
* * * *
33386529 AGCCACTGCCTCCCTCTCTGC
1 TGCCTCTGCCTCCCTCGCTAC
33386550 TGCCTCTGC
1 TGCCTCTGC
33386559 TCTAAGTTGT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.49, G:0.16, T:0.29
Consensus pattern (21 bp):
TGCCTCTGCCTCCCTCGCTAC
Found at i:33390897 original size:134 final size:133
Alignment explanation
Indices: 33390724--33390973 Score: 446
Period size: 134 Copynumber: 1.9 Consensus size: 133
33390714 GAATTCAACA
33390724 ATATAAAACGTGAGCAACAAGACAGCAATAAACTATTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTATTAAATCAATCTAAGTCCACACTAAACACA
*
33390789 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTGAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATG-AAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
33390854 TATT
130 TATT
*
33390858 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTATTAAATCAATCTAAGTCCACACTAAACACA
* * *
33390923 TAAGTTGGATAGAAACATGAAAATAGACCAAAATAACGTCTAAATAACCAA
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAA
33390974 GATGGAATCA
Statistics
Matches: 111, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
133 28 0.25
134 83 0.75
ACGTcount: A:0.51, C:0.18, G:0.11, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTATTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:33393555 original size:199 final size:199
Alignment explanation
Indices: 33393215--33393826 Score: 1170
Period size: 199 Copynumber: 3.1 Consensus size: 199
33393205 CTAATAAGAC
* *
33393215 CTTTTGCGGCGTTTTTAGCAAAGCCCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
1 CTTTTGCGGCGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
*
33393280 TTCTAATACGCGTTGTGGCGTTTATTATAGAAATGCCGCTAAAGCCACTACTATTCTGAGGAAAC
66 TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTACTATTCTGAGGAAAC
33393345 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
131 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
33393410 CTAT
196 CTAT
33393414 CTTTTGCGGCGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
1 CTTTTGCGGCGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
33393479 TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTACTATTCTGAGGAAAC
66 TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTACTATTCTGAGGAAAC
33393544 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
131 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
33393609 CTAT
196 CTAT
* *
33393613 TTTTTGCGACGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
1 CTTTTGCGGCGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
*
33393678 TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTGCTATTCTGAGGAAAC
66 TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTACTATTCTGAGGAAAC
33393743 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
131 GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
33393808 CTAT
196 CTAT
33393812 CTTTTGCGGCGTTTT
1 CTTTTGCGGCGTTTT
33393827 ATGTATAAAC
Statistics
Matches: 405, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
199 405 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (199 bp):
CTTTTGCGGCGTTTTCAGCAAAGCGCCACTAATACCTATTTTATATACACAATAAAACGACGCCG
TTCTAATACGCGTTGTGGCGTTTATTATAGAAACGCCGCTAAAGCCACTACTATTCTGAGGAAAC
GACGCCGTTTTACTGTAATGTATAATGAAATTTTGTGGCGTTTTCTAAAAAAACGCCGCTATTTT
CTAT
Found at i:33394135 original size:10 final size:11
Alignment explanation
Indices: 33394119--33394164 Score: 56
Period size: 12 Copynumber: 3.9 Consensus size: 11
33394109 ACCACTTTCC
33394119 ATATATATATTT
1 ATATATAT-TTT
33394131 ATATATATTTT
1 ATATATATTTT
*
33394142 AAAATAATATTTT
1 -ATAT-ATATTTT
33394155 ATATATATTT
1 ATATATATTT
33394165 ATCTTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 9 0.30
12 14 0.47
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATATATTTT
Found at i:33394173 original size:15 final size:15
Alignment explanation
Indices: 33394153--33394184 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
33394143 AAATAATATT
*
33394153 TTATATATATTTATC
1 TTATATACATTTATC
33394168 TTATATACATTTATC
1 TTATATACATTTATC
33394183 TT
1 TT
33394185 CTAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:33394460 original size:2 final size:2
Alignment explanation
Indices: 33394453--33394495 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
33394443 AATTATTAAA
33394453 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
33394495 A
1 A
33394496 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:33394500 original size:2 final size:2
Alignment explanation
Indices: 33394495--33394526 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
33394485 ACACACACAC
33394495 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33394527 GTTTATATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33395136 original size:14 final size:14
Alignment explanation
Indices: 33395117--33395150 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
33395107 ATTGAACCTG
33395117 CTTAAACCATATAT-
1 CTTAAACCATA-ATC
33395131 CTTAAACCATAATC
1 CTTAAACCATAATC
33395145 CTTAAA
1 CTTAAA
33395151 ATATAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 17 0.89
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
CTTAAACCATAATC
Found at i:33395452 original size:41 final size:41
Alignment explanation
Indices: 33395314--33395440 Score: 245
Period size: 41 Copynumber: 3.1 Consensus size: 41
33395304 GGTTATGGGA
*
33395314 TTTTTAGCGGCGTTTTACCTAAAGCGCCACTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
33395355 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
33395396 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
33395437 TTTT
1 TTTT
33395441 ACCGGCGGTT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 85 1.00
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
Found at i:33422365 original size:301 final size:301
Alignment explanation
Indices: 33421816--33422593 Score: 1250
Period size: 301 Copynumber: 2.6 Consensus size: 301
33421806 GTGTGATAAC
*
33421816 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAATAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
* *
33421881 TTTCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATA
66 TTCCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* * * *
33421946 TTATGTTAGTTTTCCTGTTGGGAGAAAGAGAACTGGTTGTTGTATGCAGCAGGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
* ** *
33422011 AAAGAAAATGAGAAAAAGAATAAAGGAAGTGAAATATTGCCATGGCCAAAGGTTGGATGAATTGC
196 AAAGAAAAGGAGAAAAAGAATAAAGGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGAATTGC
* *
33422076 CAACATTAATGCCATGGCAATTCCAGGATAATGCTGAGAAA
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
* **
33422117 TCTTGAAAAGAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTACATACTTAAGTAGATATAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
*
33422182 TTCCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTGTGTCTTGAATGTAATT
66 TTCCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
* *
33422247 TTATGTTATTTTTCCTATTGGGAGAAAGAGAATTGGTTGTTGTATGCAATAAGTGCAGAAAAGAT
131 TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
* * * *
33422312 GAAGAAAAGGAGAAAGAGAATAAAGGAAGTGAAATATTGCCACAGTAAAAGGTTGGATGGATTGC
196 AAAGAAAAGGAGAAAAAGAATAAAGGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGAATTGC
* *
33422377 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGATAAC
261 CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
* *
33422418 TCTTGAAAAAAGTTATATTTATAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATTTAT
1 TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
* * * *
33422483 TTGCATTTTTAGGTTACTTTTAGAACATTGCATGATAACACTTAGATTTTGTCTTGAATGTAATT
66 TTCCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAA-T
* *
33422548 TTTATGTTATTTTTCCTGTTCGGAGAAAGAGAATTGGTTATTGTAT
130 TTTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTAT
33422594 TGTAACAGCT
Statistics
Matches: 439, Mismatches: 37, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
301 395 0.90
302 44 0.10
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (301 bp):
TCTTGAAAAAAGTTATATTTCTAGCCTCTAAACTTGATTAAATGTATGTACTTAAGTAGATATAT
TTCCATTTTTAGGTTAATTTTAGAACATTGCATAATAACACTTAGATTATGTCTTGAATGTAATT
TTATGTTATTTTTCCTGTTGGGAGAAAGAGAATTGGTTGTTGTATGCAACAAGTGCAGAAAAGAT
AAAGAAAAGGAGAAAAAGAATAAAGGAAGTGAAATATTGCCACAGCAAAAGGTTGGATGAATTGC
CAACATAAATGCCAAGGCAATTCCAGGATAATGCTGAGAAA
Found at i:33422708 original size:13 final size:13
Alignment explanation
Indices: 33422690--33422714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33422680 TATGGTCTAC
33422690 GATTTCATAAAAT
1 GATTTCATAAAAT
33422703 GATTTCATAAAA
1 GATTTCATAAAA
33422715 ATTTCATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
GATTTCATAAAAT
Found at i:33423866 original size:49 final size:50
Alignment explanation
Indices: 33423784--33423959 Score: 164
Period size: 51 Copynumber: 3.5 Consensus size: 50
33423774 CTAGTGACTC
* * * *
33423784 AGTGCGGTACCATGTGAAGGCCACTTTGA-GAAG-AGATAGCTTGGTCATA
1 AGTGTGGTACTATGTGAGGGCCACTTT-ATGAAGAAGATAGCTTGGTCACA
33423833 AGTGTGGTACTATGTGAGGGCCACTTTATGAAGAAAGATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAGGGCCACTTTATGAAG-AAGATAGC-TTGGTCACA
* * * * * *
33423885 AGTGTGGTATTATATG-GAGGCCACTTTGTGAAGAAGGTAGCTTTGACTACA
1 AGTGTGGTACTATGTGAG-GGCCACTTTATGAAGAAGATAGCTTGGTC-ACA
33423936 A-TGGTGGTACTATGTGCA-GGCCAC
1 AGT-GTGGTACTATGTG-AGGGCCAC
33423960 CGGGTATCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
48 1 0.01
49 28 0.26
50 5 0.05
51 36 0.34
52 36 0.34
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (50 bp):
AGTGTGGTACTATGTGAGGGCCACTTTATGAAGAAGATAGCTTGGTCACA
Found at i:33434566 original size:18 final size:16
Alignment explanation
Indices: 33434492--33434579 Score: 65
Period size: 16 Copynumber: 5.4 Consensus size: 16
33434482 TTATAAATTA
*
33434492 AAAATAAATAATATAT
1 AAAATAAATAATATTT
33434508 AATATATACAAT-ATATTT
1 AA-A-ATA-AATAATATTT
** *
33434526 AATGTAAGTAATATTT
1 AAAATAAATAATATTT
33434542 AAAATAAATAATATTTT
1 AAAATAAATAATA-TTT
*
33434559 ATAAATAAA-AAT-TTG
1 A-AAATAAATAATATTT
33434574 AAAATA
1 AAAATA
33434580 GTATAGAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.09
15 5 0.09
16 20 0.34
17 8 0.14
18 17 0.29
19 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATAAATAATATTT
Found at i:33435200 original size:20 final size:21
Alignment explanation
Indices: 33435177--33435216 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
33435167 TAAGCCCACC
* *
33435177 GATATTTTTTTATT-TTTTAA
1 GATATATTTATATTGTTTTAA
33435197 GATATATTTATATTGTTTTA
1 GATATATTTATATTGTTTTA
33435217 TTTTAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (21 bp):
GATATATTTATATTGTTTTAA
Found at i:33438586 original size:57 final size:57
Alignment explanation
Indices: 33438468--33438592 Score: 135
Period size: 57 Copynumber: 2.2 Consensus size: 57
33438458 CCGAGAAACA
* * * ** * * *
33438468 GATCTAGATCGCCTGGGAGAGCGATAATCATCTTTTGCCCCACGATCCCTTGACATG
1 GATCTAGACCGACTGGGAGAGCGATAATCATCTCTCACACCACGATCCCTAGAAATG
* * *
33438525 GATCTGGACCGACTGGGAGAGCGATAATCATCTCTCATACCACGAT-CCTGAGAAATT
1 GATCTAGACCGACTGGGAGAGCGATAATCATCTCTCACACCACGATCCCT-AGAAATG
33438582 GATCTAGACCG
1 GATCTAGACCG
33438593 CCTAGGGGAG
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
56 3 0.05
57 52 0.95
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (57 bp):
GATCTAGACCGACTGGGAGAGCGATAATCATCTCTCACACCACGATCCCTAGAAATG
Found at i:33442189 original size:17 final size:17
Alignment explanation
Indices: 33442164--33442197 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33442154 TGAATTTTGC
33442164 ATTTCGAATAACTCGAA
1 ATTTCGAATAACTCGAA
* *
33442181 ATTTTGAATAATTCGAA
1 ATTTCGAATAACTCGAA
33442198 TAATAAATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
ATTTCGAATAACTCGAA
Found at i:33445884 original size:14 final size:14
Alignment explanation
Indices: 33445865--33445893 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33445855 TCAACCCTAT
33445865 TAAATTAAGTAACA
1 TAAATTAAGTAACA
33445879 TAAATTAAGTAACA
1 TAAATTAAGTAACA
33445893 T
1 T
33445894 TATTGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (14 bp):
TAAATTAAGTAACA
Found at i:33455584 original size:26 final size:26
Alignment explanation
Indices: 33455554--33455605 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
33455544 AGCATGGCCG
33455554 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
33455580 AACCCTAGCTTCAATAATGGCTTCTT
1 AACCCTAGCTTCAATAATGGCTTCTT
33455606 TCTCTTCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
AACCCTAGCTTCAATAATGGCTTCTT
Found at i:33459710 original size:31 final size:31
Alignment explanation
Indices: 33459669--33459732 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
33459659 CCTTTTCATA
*
33459669 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
33459700 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
33459731 TT
1 TT
33459733 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:33459976 original size:24 final size:24
Alignment explanation
Indices: 33459940--33460068 Score: 179
Period size: 24 Copynumber: 5.4 Consensus size: 24
33459930 CTGGAGGTCT
*
33459940 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
33459965 AGCCCTTTTAATAACTGGGTCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
33459989 AGCCC-TTTAATAACTAGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
*
33460012 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
33460036 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
33460060 AGCCCTTTT
1 AGCCCTTTT
33460069 TCACTTCCTC
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 20 0.21
24 70 0.74
25 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:33460016 original size:47 final size:48
Alignment explanation
Indices: 33459940--33460068 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
33459930 CTGGAGGTCT
* * *
33459940 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGTCATA
1 AGCC-CTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
33459989 AGCCC-TTTAATAACTAGGGTATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
33460036 AGCCCTTTTGATAACTAGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTAGGGCATAAGCCCTTTT
33460069 TCACTTCCTC
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
47 42 0.58
48 26 0.36
49 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (48 bp):
AGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:33460142 original size:20 final size:20
Alignment explanation
Indices: 33460117--33460183 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
33460107 TTATGAATAC
33460117 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
33460137 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33460157 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33460177 ACCATGT
1 ATCATGT
33460184 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:33460148 original size:11 final size:11
Alignment explanation
Indices: 33460117--33460172 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
33460107 TTATGAATAC
33460117 ATCATGTGCAT
1 ATCATGTGCAT
*
33460128 ATCA--TACAT
1 ATCATGTGCAT
33460137 ATCATGTGCAT
1 ATCATGTGCAT
*
33460148 ATCA--TACAT
1 ATCATGTGCAT
*
33460157 GTCATGTGCAT
1 ATCATGTGCAT
33460168 ATCAT
1 ATCAT
33460173 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:33465762 original size:35 final size:35
Alignment explanation
Indices: 33465722--33465886 Score: 206
Period size: 35 Copynumber: 4.7 Consensus size: 35
33465712 TCCATGGCAA
* *
33465722 AGTTGTGAAATGTAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* *
33465757 AGTTGTGAAACGTAAGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
33465792 AGTTGTAAAACGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * *
33465827 AGTTAAGAAACGTAGGTATGGCATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
* * *
33465862 AGTTGTAAAATGTAGGTAAGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
33465887 TCAATGAGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
34 1 0.01
35 110 0.99
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:33465837 original size:70 final size:70
Alignment explanation
Indices: 33465722--33465886 Score: 231
Period size: 70 Copynumber: 2.4 Consensus size: 70
33465712 TCCATGGCAA
* * ** *
33465722 AGTTGTGAAATGTAGGTATGGTATCATCCATACTGAGTTGTGAAACGTAAGTATGGTATTAACCA
1 AGTTGTAAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAACGTAAGTATGGCATTAACCA
*
33465787 TACTG
66 TACCG
* * **
33465792 AGTTGTAAAACGTAGGTATGGTATTATCCATACTGAGTTAAGAAACGTAGGTATGGCATTTCCCA
1 AGTTGTAAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAACGTAAGTATGGCATTAACCA
33465857 TACCG
66 TACCG
*
33465862 AGTTGTAAAATGTAGGTAAGGTATT
1 AGTTGTAAAATGTAGGTATGGTATT
33465887 TCAATGAGAA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 83 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (70 bp):
AGTTGTAAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAACGTAAGTATGGCATTAACCA
TACCG
Found at i:33471273 original size:18 final size:18
Alignment explanation
Indices: 33471238--33471272 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
33471228 CAGCAAGAAA
33471238 ATTTATATTTTTGATTTT
1 ATTTATATTTTTGATTTT
33471256 ATTTATATTTTT-ATTTT
1 ATTTATATTTTTGATTTT
33471273 TCGGCTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTATATTTTTGATTTT
Found at i:33472306 original size:14 final size:14
Alignment explanation
Indices: 33472272--33472308 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
33472262 TACTTTCATT
* *
33472272 TATATACATGTATA
1 TATATATATGTAAA
33472286 TATATATATGTAAA
1 TATATATATGTAAA
33472300 TATATATAT
1 TATATATAT
33472309 ATTTTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (14 bp):
TATATATATGTAAA
Found at i:33472347 original size:2 final size:2
Alignment explanation
Indices: 33472342--33472376 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
33472332 TGTTCTTTTT
33472342 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33472377 TTCTATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:33472506 original size:16 final size:16
Alignment explanation
Indices: 33472481--33472511 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33472471 TATTGATTTC
33472481 ATATTATTCTATGTAA
1 ATATTATTCTATGTAA
*
33472497 ATATTTTTCTATGTA
1 ATATTATTCTATGTA
33472512 TGTATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
ATATTATTCTATGTAA
Found at i:33472645 original size:17 final size:17
Alignment explanation
Indices: 33472616--33472648 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33472606 TTTCATATAT
*
33472616 TATTATCTTTATGTATG
1 TATTATCTATATGTATG
33472633 TATTATCTATATGTAT
1 TATTATCTATATGTAT
33472649 CATTAATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (17 bp):
TATTATCTATATGTATG
Found at i:33472985 original size:12 final size:12
Alignment explanation
Indices: 33472968--33473010 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
33472958 TTCTTAGGAT
33472968 TATATTTTATTA
1 TATATTTTATTA
**
33472980 TATATTTT-TGC
1 TATATTTTATTA
33472991 TATATTTTATTA
1 TATATTTTATTA
*
33473003 TGTATTTT
1 TATATTTT
33473011 TGCTATCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:33472994 original size:23 final size:23
Alignment explanation
Indices: 33472968--33473016 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
33472958 TTCTTAGGAT
33472968 TATATTTTATTATATATTTTTGC
1 TATATTTTATTATATATTTTTGC
*
33472991 TATATTTTATTATGTATTTTTGC
1 TATATTTTATTATATATTTTTGC
33473014 TAT
1 TAT
33473017 CCTTTCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (23 bp):
TATATTTTATTATATATTTTTGC
Found at i:33478143 original size:2 final size:2
Alignment explanation
Indices: 33478136--33478167 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
33478126 AGCATAGTTG
*
33478136 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33478168 TCGACCATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:33478885 original size:27 final size:27
Alignment explanation
Indices: 33478801--33478954 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
33478791 GACGAGAATG
* * *
33478801 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCT-G-ATTATATA
*
33478830 GCACTAAGTGTGCGAGCTCAAATTATATA
1 GCACTAAGTGTGCGAGCT--GATTATATA
* *
33478859 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
**
33478886 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGCG-AGCTGATTATATA
* * *
33478914 GCATTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
33478941 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33478955 GATTCACTAT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
27 42 0.40
28 22 0.21
29 40 0.38
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTGATTATATA
Done.