Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 136 of 444
Found at i:36057630 original size:30 final size:30
Alignment explanation
Indices: 36057596--36057656 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36057586 TCCTTAACTC
36057596 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36057626 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36057656 A
1 A
36057657 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36060693 original size:19 final size:19
Alignment explanation
Indices: 36060669--36060714 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
36060659 TTGGTTGTTT
36060669 TCCCTTTTGATTCGTAGCC
1 TCCCTTTTGATTCGTAGCC
36060688 TCCCTTTTGATTCGTAGCC
1 TCCCTTTTGATTCGTAGCC
36060707 TCCCTTTT
1 TCCCTTTT
36060715 AATCTTGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.09, C:0.33, G:0.13, T:0.46
Consensus pattern (19 bp):
TCCCTTTTGATTCGTAGCC
Found at i:36062486 original size:24 final size:24
Alignment explanation
Indices: 36062454--36062503 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
36062444 ACTAGCCCAT
36062454 CAAATAATCATTGCATATAATACA
1 CAAATAATCATTGCATATAATACA
*
36062478 CAAATAATCATTGCATCTAATACA
1 CAAATAATCATTGCATATAATACA
36062502 CA
1 CA
36062504 TTTACAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.48, C:0.20, G:0.04, T:0.28
Consensus pattern (24 bp):
CAAATAATCATTGCATATAATACA
Found at i:36063146 original size:19 final size:19
Alignment explanation
Indices: 36063097--36063175 Score: 54
Period size: 19 Copynumber: 4.2 Consensus size: 19
36063087 GAAAAAATTC
* *
36063097 AAATAT-TAAAAATTAGAA
1 AAATATATAAAAATCATAA
*
36063115 AAATCATA-GAAAATCATAA
1 AAAT-ATATAAAAATCATAA
**
36063134 AAATATATAAAAAATTGTAA
1 AAATATAT-AAAAATCATAA
* * *
36063154 AATTTTATAAAAATCGTAA
1 AAATATATAAAAATCATAA
36063173 AAA
1 AAA
36063176 AATTATACAA
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
18 7 0.15
19 26 0.55
20 14 0.30
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (19 bp):
AAATATATAAAAATCATAA
Found at i:36063147 original size:20 final size:20
Alignment explanation
Indices: 36063124--36063207 Score: 55
Period size: 20 Copynumber: 4.2 Consensus size: 20
36063114 AAAATCATAG
36063124 AAAATCATAAAAATATATAA
1 AAAATCATAAAAATATATAA
** * *
36063144 AAAATTGTAAAATTTTAT-A
1 AAAATCATAAAAATATATAA
* * *
36063163 AAAATCGTAAAAAAATTATAC
1 AAAATCATAAAAATA-TATAA
* * *
36063184 AATAT-ATAGAAATATAAAA
1 AAAATCATAAAAATATATAA
36063203 AAAAT
1 AAAAT
36063208 TCTAAAATTT
Statistics
Matches: 46, Mismatches: 16, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
19 19 0.41
20 23 0.50
21 4 0.09
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (20 bp):
AAAATCATAAAAATATATAA
Found at i:36063165 original size:29 final size:29
Alignment explanation
Indices: 36063133--36063223 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
36063123 GAAAATCATA
*
36063133 AAAATATATAAAAAATTGTAAAATTTTAT
1 AAAATATATAAAAAATTATAAAATTTTAT
* * *
36063162 AAAA-ATCGTAAAAAAATTATACAA-TATAT
1 AAAATAT-AT-AAAAAATTATAAAATTTTAT
* *
36063191 AGAAATATAAAAAAAATTCTAAAATTTTAT
1 A-AAATATATAAAAAATTATAAAATTTTAT
36063221 AAA
1 AAA
36063224 GTCGTAAGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
28 2 0.04
29 24 0.50
30 20 0.42
31 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAATATATAAAAAATTATAAAATTTTAT
Found at i:36063237 original size:58 final size:60
Alignment explanation
Indices: 36063134--36063261 Score: 179
Period size: 59 Copynumber: 2.1 Consensus size: 60
36063124 AAAATCATAA
* * *
36063134 AAATATATAAAAAATTGTAAAATTTTATAAAAATCGTAAAAAAATTATAC-AATATATAG
1 AAATATAAAAAAAATTCTAAAATTTTATAAAAATCGTAAAAAAATTATACAAATATAAAG
* * *
36063193 AAATATAAAAAAAATTCTAAAATTTTAT-AAAGTCGTAAGAAAATTATACAAAATGTAAAG
1 AAATATAAAAAAAATTCTAAAATTTTATAAAAATCGTAAAAAAATTATAC-AAATATAAAG
36063253 AAATATAAA
1 AAATATAAA
36063262 TTTCTTAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
58 19 0.31
59 26 0.43
60 16 0.26
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (60 bp):
AAATATAAAAAAAATTCTAAAATTTTATAAAAATCGTAAAAAAATTATACAAATATAAAG
Found at i:36063318 original size:35 final size:35
Alignment explanation
Indices: 36063272--36063350 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
36063262 TTTCTTAAAA
*
36063272 AAAAAAAACTAGGCAACACGTAATGACTTTAATTG
1 AAAAAAAACTAGGCAACACATAATGACTTTAATTG
** *
36063307 AAAAAAAACTAGGCGGCACATGATGACTTTAATTG
1 AAAAAAAACTAGGCAACACATAATGACTTTAATTG
36063342 AAAAAAAAC
1 AAAAAAAAC
36063351 AAGGGGTCGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (35 bp):
AAAAAAAACTAGGCAACACATAATGACTTTAATTG
Found at i:36063395 original size:19 final size:19
Alignment explanation
Indices: 36063367--36063422 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
36063357 TCGTTAATTT
*
36063367 TTTTATAATTTTTATAAAG
1 TTTTACAATTTTTATAAAG
* ***
36063386 TTTTACAATTTTTTTATTT
1 TTTTACAATTTTTATAAAG
36063405 TTTTACAATTTTTATAAA
1 TTTTACAATTTTTATAAA
36063423 AATTTTCTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTACAATTTTTATAAAG
Found at i:36063437 original size:38 final size:38
Alignment explanation
Indices: 36063363--36063437 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 38
36063353 GGGGTCGTTA
* *
36063363 ATTTTTTTATAATTTTTATAAAGTTTTACAATTTTTTT
1 ATTTTTTTACAATTTTTATAAAATTTTACAATTTTTTT
36063401 ATTTTTTTACAATTTTTATAAAAATTTT-CTAATTTTT
1 ATTTTTTTACAATTTTTAT-AAAATTTTAC-AATTTTT
36063438 AATAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 19 0.58
39 14 0.42
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (38 bp):
ATTTTTTTACAATTTTTATAAAATTTTACAATTTTTTT
Found at i:36063445 original size:20 final size:20
Alignment explanation
Indices: 36063411--36063509 Score: 66
Period size: 20 Copynumber: 5.1 Consensus size: 20
36063401 ATTTTTTTAC
36063411 AATTTTT-ATAAAAATTTTCT
1 AATTTTTAAT-AAAATTTTCT
*
36063431 AATTTTTAATAAAA-TTT-A
1 AATTTTTAATAAAATTTTCT
* *
36063449 AATTTTCT-AT--ATTTTTATT
1 AATTTT-TAATAAAATTTT-CT
**
36063468 AAAATTTAATAAAATTTTCT
1 AATTTTTAATAAAATTTTCT
**
36063488 AAAATTTAATAAAATTTTCT
1 AATTTTTAATAAAATTTTCT
36063508 AA
1 AA
36063510 AATTTATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
16 1 0.02
17 3 0.05
18 9 0.14
19 10 0.16
20 34 0.53
21 7 0.11
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTTTTAATAAAATTTTCT
Found at i:36063470 original size:27 final size:26
Alignment explanation
Indices: 36063422--36063504 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 26
36063412 ATTTTTATAA
36063422 AAATTTTCTAATTTTTAATAAAATTT
1 AAATTTTCTAATTTTTAATAAAATTT
*
36063448 AAATTTTCTATATTTTTATTAAAATTTAAT
1 AAATTTTCTA-ATTTTTAATAAAA-TT--T
**
36063478 AAAATTTTCTAAAATTTAATAAAATTT
1 -AAATTTTCTAATTTTTAATAAAATTT
36063505 TCTAAAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
26 10 0.21
27 13 0.27
28 2 0.04
29 2 0.04
30 11 0.23
31 10 0.21
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
AAATTTTCTAATTTTTAATAAAATTT
Found at i:36063475 original size:10 final size:10
Alignment explanation
Indices: 36063462--36063518 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
36063452 TTTCTATATT
36063462 TTTATTAAAA
1 TTTATTAAAA
*
36063472 TTTAATAAAA
1 TTTATTAAAA
36063482 TTT-TCTAAAA
1 TTTAT-TAAAA
*
36063492 TTTAATAAAA
1 TTTATTAAAA
36063502 TTT-TCTAAAA
1 TTTAT-TAAAA
36063512 TTTATTA
1 TTTATTA
36063519 TTTTTTAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 38 0.97
11 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (10 bp):
TTTATTAAAA
Found at i:36063484 original size:57 final size:58
Alignment explanation
Indices: 36063367--36063504 Score: 158
Period size: 57 Copynumber: 2.4 Consensus size: 58
36063357 TCGTTAATTT
* * * * *
36063367 TTTTATAATTTTT-ATAAAGTTTTACAATTTTTTTATTTTTTTACAATTTTTATAAAAA
1 TTTTCTAATTTTTAATAAA-ATTTACAATTTTTATATTTTTTTACAAATTTAATAAAAA
36063425 TTTTCTAATTTTTAATAAAATTTA-AATTTTCTATATTTTTATTA-AAATTTAAT-AAAA
1 TTTTCTAATTTTTAATAAAATTTACAATTTT-TATATTTTT-TTACAAATTTAATAAAAA
**
36063482 TTTTCTAAAATTTAATAAAATTT
1 TTTTCTAATTTTTAATAAAATTT
36063505 TCTAAAATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
57 31 0.44
58 31 0.44
59 8 0.11
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.57
Consensus pattern (58 bp):
TTTTCTAATTTTTAATAAAATTTACAATTTTTATATTTTTTTACAAATTTAATAAAAA
Found at i:36063510 original size:20 final size:20
Alignment explanation
Indices: 36063467--36063515 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
36063457 ATATTTTTAT
36063467 TAAAATTTAATAAAATTTTC
1 TAAAATTTAATAAAATTTTC
36063487 TAAAATTTAATAAAATTTTC
1 TAAAATTTAATAAAATTTTC
36063507 TAAAATTTA
1 TAAAATTTA
36063516 TTATTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAATTTAATAAAATTTTC
Found at i:36063702 original size:90 final size:86
Alignment explanation
Indices: 36063552--36063764 Score: 261
Period size: 90 Copynumber: 2.4 Consensus size: 86
36063542 TTTTAATAAG
* *
36063552 AGTAGGGACTTAATTG-TTTTTTTGAAAAATTTTGAGTCTTTTTGATACATTTTGAAAGTTCAAC
1 AGTAGGGACTTAATTGCTTTTTTTGAAAAAGTTTGAGGCTTTTTGATACATTTTGAAAGTTCAAC
36063616 TACCCAATTGAGTGAAAAAAAA
66 TACCCAATTGAGT-AAAAAAAA
* *
36063638 TAGTAGGGACTTAATTGCTTTTTTCT-AATAAGTTTGAAGGGCTTTTTGATGCATTTTGAAAGTT
1 -AGTAGGGACTTAATTGCTTTTTT-TGAAAAAGTTTG-A-GGCTTTTTGATACATTTTGAAAGTT
* *
36063702 CAAGTACTCAATTGAGTAAAAAAAA
62 CAACTACCCAATTGAGTAAAAAAAA
* * *
36063727 AG-AGAGACTTAATTACTTTTTTTTAAAAAAAGTTTGAG
1 AGTAGGGACTTAATTGC-TTTTTTT-GAAAAAGTTTGAG
36063765 AACTTTTTAC
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
87 30 0.27
88 23 0.21
89 19 0.17
90 38 0.35
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (86 bp):
AGTAGGGACTTAATTGCTTTTTTTGAAAAAGTTTGAGGCTTTTTGATACATTTTGAAAGTTCAAC
TACCCAATTGAGTAAAAAAAA
Found at i:36067445 original size:2 final size:2
Alignment explanation
Indices: 36067440--36067468 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36067430 CACCTCACTC
36067440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36067469 CCAAAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36077338 original size:21 final size:20
Alignment explanation
Indices: 36077310--36077351 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
36077300 AGATCTTTAG
36077310 TCTTGAT-GATAAATTCGGCT
1 TCTTGATGGATAAA-TCGGCT
*
36077330 TCTTAGATGGATTAATCGGCT
1 TCTT-GATGGATAAATCGGCT
36077351 T
1 T
36077352 TCCTTGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (20 bp):
TCTTGATGGATAAATCGGCT
Found at i:36095799 original size:39 final size:39
Alignment explanation
Indices: 36095752--36095934 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
36095742 AATGTTCGAG
36095752 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36095791 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36095830 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
36095869 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36095909 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36095935 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36103233 original size:39 final size:39
Alignment explanation
Indices: 36103186--36103368 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
36103176 AATGTTCGAG
36103186 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36103225 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36103264 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
36103303 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36103343 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36103369 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36110572 original size:35 final size:35
Alignment explanation
Indices: 36110533--36110605 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
36110523 GGTATGTGAT
36110533 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
36110568 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
36110603 ATA
1 ATA
36110606 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:36112310 original size:43 final size:43
Alignment explanation
Indices: 36112005--36112298 Score: 489
Period size: 43 Copynumber: 6.8 Consensus size: 43
36111995 TGAAACTCGG
* **
36112005 TGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGTAGA
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
36112048 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
36112091 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
*
36112134 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAA
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
* *
36112177 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGACTTCGTGTCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGG-CTTCGTGCCGA
* * *
36112221 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
*
36112264 TGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
36112299 AATGCCGGTG
Statistics
Matches: 238, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
43 199 0.84
44 39 0.16
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA
Found at i:36112567 original size:29 final size:28
Alignment explanation
Indices: 36112467--36112625 Score: 124
Period size: 29 Copynumber: 5.5 Consensus size: 28
36112457 ATGATTAGAG
* *
36112467 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
36112496 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
36112524 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
36112554 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
36112582 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
36112611 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
36112626 GATCGGTCAG
Statistics
Matches: 99, Mismatches: 24, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
28 27 0.27
29 64 0.65
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:36112642 original size:28 final size:28
Alignment explanation
Indices: 36112496--36112650 Score: 89
Period size: 29 Copynumber: 5.4 Consensus size: 28
36112486 CTTTAACCGA
* * *
36112496 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* ** * * *
36112525 GCACTGTGTGTGCGA-ATTCCTTTAACCGA
1 GCACTATGTGTGCGAGA-T-CGGTCACTGG
* *
36112554 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
36112583 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
36112611 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
36112639 GCACTAAGTGTG
1 GCACTATGTGTG
36112651 TGAAATGAGA
Statistics
Matches: 94, Mismatches: 26, Indels: 13
0.71 0.20 0.10
Matches are distributed among these distances:
28 37 0.39
29 51 0.54
30 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:36112652 original size:58 final size:58
Alignment explanation
Indices: 36112464--36112632 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
36112454 CGAATGATTA
* *
36112464 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
36112522 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
36112580 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
36112633 CAGTGGGCAC
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 31 0.29
58 76 0.71
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:36116626 original size:35 final size:35
Alignment explanation
Indices: 36116587--36116659 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
36116577 GGTATGTGAT
36116587 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
36116622 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
36116657 ATA
1 ATA
36116660 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:36118437 original size:47 final size:47
Alignment explanation
Indices: 36118383--36118473 Score: 157
Period size: 47 Copynumber: 1.9 Consensus size: 47
36118373 AAGGTCTTGA
*
36118383 GTGATAGTGTGATCGAAGCTTTTGATGTCACTAGATTCC-CGATGGCG
1 GTGATAGTGTGATCGAAGCTTTTGATGTCACCAGA-TCCTCGATGGCG
36118430 GTGATAGTGTGATCGAAGCTTTTGATGTCACCAGATCCTCGATG
1 GTGATAGTGTGATCGAAGCTTTTGATGTCACCAGATCCTCGATG
36118474 CTAGCTTGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 3 0.07
47 39 0.93
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (47 bp):
GTGATAGTGTGATCGAAGCTTTTGATGTCACCAGATCCTCGATGGCG
Found at i:36128784 original size:30 final size:30
Alignment explanation
Indices: 36128750--36128810 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36128740 TCCTTAACTC
36128750 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36128780 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36128810 A
1 A
36128811 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36133202 original size:30 final size:30
Alignment explanation
Indices: 36133168--36133228 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36133158 TCCTTAACTC
36133168 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36133198 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36133228 A
1 A
36133229 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36163688 original size:43 final size:43
Alignment explanation
Indices: 36163627--36163710 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
36163617 TGTGATTCCA
**
36163627 ATATGTGTTTACAAGTAAGACC-CTGTCTGGGACAGTGGCATCG
1 ATATGTGGCTACAAGTAAGACCAC-GTCTGGGACAGTGGCATCG
* *
36163670 ATATGTGGCTACATGTAAGACCACGTCTGGGACATTGGCAT
1 ATATGTGGCTACAAGTAAGACCACGTCTGGGACAGTGGCAT
36163711 TGTATGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
ATATGTGGCTACAAGTAAGACCACGTCTGGGACAGTGGCATCG
Found at i:36181320 original size:101 final size:99
Alignment explanation
Indices: 36181147--36181330 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 99
36181137 CTAGTACGCA
*
36181147 TAGTAGCCTGCACTTAGTACTACACATTTGACCAATTATCCGCTACACATAGTAACCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGCTACACATAGTAACCTGCACTTA
*
36181212 GTACTACACATGTGACCTAACGATCTGATACATG
66 GTACTACACATGCGACCTAACGATCTGATACATG
* * * * *
36181246 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGCTACACATAGTAACCTGCACT
36181311 TAGTACTACACATGCGACCT
64 TAGTACTACACATGCGACCT
36181331 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 30 0.39
100 3 0.04
101 43 0.57
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGCTACACATAGTAACCTGCACTTA
GTACTACACATGCGACCTAACGATCTGATACATG
Found at i:36184918 original size:16 final size:16
Alignment explanation
Indices: 36184897--36184928 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36184887 AAGGCACACG
36184897 GGCGTGTCTTGTGGCT
1 GGCGTGTCTTGTGGCT
36184913 GGCGTGTCTTGTGGCT
1 GGCGTGTCTTGTGGCT
36184929 ATGTAGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.44, T:0.38
Consensus pattern (16 bp):
GGCGTGTCTTGTGGCT
Found at i:36190206 original size:16 final size:16
Alignment explanation
Indices: 36190185--36190215 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36190175 TAAAAAAAAA
*
36190185 ACATGAATATAAATAG
1 ACATGAAAATAAATAG
36190201 ACATGAAAATAAATA
1 ACATGAAAATAAATA
36190216 AAGATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.23
Consensus pattern (16 bp):
ACATGAAAATAAATAG
Found at i:36197168 original size:2 final size:2
Alignment explanation
Indices: 36197163--36197200 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
36197153 TTTAAATATT
36197163 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
36197201 ATCTTCGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:36198756 original size:49 final size:50
Alignment explanation
Indices: 36198703--36198991 Score: 260
Period size: 50 Copynumber: 5.7 Consensus size: 50
36198693 AACCGAAGCT
* *
36198703 ATTTGGTACACATATTAGCCTGCACTTAGTACTACACATGTGACC-AACA
1 ATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
** *
36198752 ATTTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
* * * * *
36198802 ATTTGATACACGTAGTAGCCTGCACTCAGTACTACACACGTGA-TTGAA-G
1 ATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AACA
* * * * * * *
36198851 TTGTCTGGTACGCATAGTAGCCTGCACTCAATACTACACATGCGACCTAACT
1 AT-T-TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
* * * * *
36198903 ATCTAGTACACATAGTATCCTGCACTTTGTACTACACACGTGACCTAAAACC
1 ATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACA
*** * * *
36198955 ATTTTAAACACATAGTAGTCTGCACATAGTACAACAC
1 ATTTGGTACACATAGTAGCCTGCACTTAGTACTACAC
36198992 TTGTGTTCTT
Statistics
Matches: 193, Mismatches: 39, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
49 43 0.22
50 81 0.42
51 36 0.19
52 33 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
ATTTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
Found at i:36198898 original size:101 final size:101
Alignment explanation
Indices: 36198764--36198945 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 101
36198754 TTGGTACATG
* * * * *
36198764 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-TTGATACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTCAATACTACACACGCGACCTAACCATCTAG-TACACATAGTAGCCTGCACT
36198828 CAGTACTACACACGTGATTGAAGTTGTCTGGTACGCA
65 CAGTACTACACACGTGATTGAAGTTGTCTGGTACGCA
* * * *
36198865 TAGTAGCCTGCACTCAATACTACACATGCGACCTAACTATCTAGTACACATAGTATCCTGCACTT
1 TAGTAGCCTGCACTCAATACTACACACGCGACCTAACCATCTAGTACACATAGTAGCCTGCACTC
*
36198930 TGTACTACACACGTGA
66 AGTACTACACACGTGA
36198946 CCTAAAACCA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
101 68 0.97
102 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTCAATACTACACACGCGACCTAACCATCTAGTACACATAGTAGCCTGCACTC
AGTACTACACACGTGATTGAAGTTGTCTGGTACGCA
Found at i:36198947 original size:151 final size:151
Alignment explanation
Indices: 36198706--36198979 Score: 379
Period size: 151 Copynumber: 1.8 Consensus size: 151
36198696 CGAAGCTATT
* * * * * * **
36198706 TGGTACACATATTAGCCTGCACTTAGTACTACACATGTGACCAACAATTTGGTACATGTAGTAGC
1 TGGTACACATAGTAGCCTGCACTCAATACTACACATGCGACCAACAATCTAGTACACATAGTAGC
* *
36198771 CTGCACTTAGTACTACACACGTGACCT-AACCATTTGATACACGTAGTAGCCTGCACTCAGTACT
66 CTGCACTTAGTACTACACACGTGACCTAAACCATTTGAAACACATAGTAGCCTGCACTCAGTACT
36198835 ACACACGTGATTGAAGTTGTC
131 ACACACGTGATTGAAGTTGTC
* * *
36198856 TGGTACGCATAGTAGCCTGCACTCAATACTACACATGCGACCTAACTATCTAGTACACATAGTAT
1 TGGTACACATAGTAGCCTGCACTCAATACTACACATGCGACC-AACAATCTAGTACACATAGTAG
* * *
36198921 CCTGCACTTTGTACTACACACGTGACCTAAAACCATTTTAAACACATAGTAGTCTGCAC
65 CCTGCACTTAGTACTACACACGTGACCT-AAACCATTTGAAACACATAGTAGCCTGCAC
36198980 ATAGTACAAC
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
150 37 0.35
151 43 0.41
153 25 0.24
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (151 bp):
TGGTACACATAGTAGCCTGCACTCAATACTACACATGCGACCAACAATCTAGTACACATAGTAGC
CTGCACTTAGTACTACACACGTGACCTAAACCATTTGAAACACATAGTAGCCTGCACTCAGTACT
ACACACGTGATTGAAGTTGTC
Found at i:36208795 original size:57 final size:57
Alignment explanation
Indices: 36208687--36208797 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 57
36208677 TTTACTCAAT
* * * *
36208687 AGAGCTTAGTTAGGATTACCAGTCTAGACTAAATTCTTTATGTAACGTATGCTCAGA
1 AGAGCTTAATTAGGATTACCAGTCTAGACTAAATCCTATATGTAACATATGCTCAGA
* *
36208744 AGAGCTTAATTAGGATTACCAGTCTAGGCTAAATCCTA-ATTGTATCATATGCTC
1 AGAGCTTAATTAGGATTACCAGTCTAGACTAAATCCTATA-TGTAACATATGCTC
36208798 GAGAGGAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 1 0.02
57 46 0.98
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (57 bp):
AGAGCTTAATTAGGATTACCAGTCTAGACTAAATCCTATATGTAACATATGCTCAGA
Found at i:36209232 original size:20 final size:20
Alignment explanation
Indices: 36209207--36209253 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
36209197 TCTATCCTCT
*
36209207 AATTTGGTCTATCC-AGATCC
1 AATTTGGTCGATCCGA-ATCC
*
36209227 AATTTGGTCGATTCGAATCC
1 AATTTGGTCGATCCGAATCC
36209247 AATTTGG
1 AATTTGG
36209254 CCAAGAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (20 bp):
AATTTGGTCGATCCGAATCC
Found at i:36211085 original size:21 final size:21
Alignment explanation
Indices: 36211059--36211099 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
36211049 CAACTTAACC
36211059 ATATTTTTACCTATTTTGATA
1 ATATTTTTACCTATTTTGATA
36211080 ATATTTTTACCTATTTTGAT
1 ATATTTTTACCTATTTTGAT
36211100 CCCTATAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.05, T:0.59
Consensus pattern (21 bp):
ATATTTTTACCTATTTTGATA
Found at i:36212868 original size:28 final size:28
Alignment explanation
Indices: 36212836--36212934 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
36212826 TGCATAAGCC
*
36212836 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
36212864 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
36212892 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
36212921 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36212935 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:36220533 original size:28 final size:28
Alignment explanation
Indices: 36220501--36220599 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
36220491 TGCATAAGCC
*
36220501 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
36220529 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
36220557 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
36220586 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36220600 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:36222802 original size:40 final size:40
Alignment explanation
Indices: 36222757--36222923 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
36222747 CGGAATATAA
36222757 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36222797 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
36222837 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36222877 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36222916 CCGGATAT
1 CCGGATAT
36222924 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36222907 original size:80 final size:79
Alignment explanation
Indices: 36222757--36222923 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
36222747 CGGAATATAA
* *
36222757 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
36222822 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
36222837 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
36222899 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
36222916 CCGGATAT
1 CCGGATAT
36222924 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:36225264 original size:40 final size:39
Alignment explanation
Indices: 36225097--36225266 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
36225087 AGAAATTGAA
*
36225097 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
36225136 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
36225176 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
36225216 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
36225256 TGATATCCGGG
1 TGATATCCGGG
36225267 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:36233267 original size:40 final size:39
Alignment explanation
Indices: 36233099--36233269 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
36233089 AGAAATTGAA
* *
36233099 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
36233139 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
36233179 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
36233219 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
36233259 TGATATCCGGG
1 TGATATCCGGG
36233270 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:36236730 original size:48 final size:47
Alignment explanation
Indices: 36236673--36236819 Score: 159
Period size: 48 Copynumber: 3.1 Consensus size: 47
36236663 CACATGGTAA
* * *
36236673 GATACCAATGCAATATCTCGGATATGGTCTTACATGGGATCACATATC
1 GATACCAATGCCATGTC-CAGATATGGTCTTACATGGGATCACATATC
* ** ** *
36236721 GATACCAATGCCATGTCCTAGACATGGTCTTACATGGGATCGTAGGTT
1 GATACCAATGCCATGTCC-AGATATGGTCTTACATGGGATCACATATC
* **
36236769 GATGCCAATGCCATGTCCCAGATATGGTCTTACATAAGATCACATATC
1 GATACCAATGCCATGT-CCAGATATGGTCTTACATGGGATCACATATC
36236817 GAT
1 GAT
36236820 GTCGATAGCC
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
47 1 0.01
48 76 0.96
49 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
GATACCAATGCCATGTCCAGATATGGTCTTACATGGGATCACATATC
Found at i:36239037 original size:32 final size:33
Alignment explanation
Indices: 36238972--36239040 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
36238962 TTTTTCCTAG
*
36238972 TTTTATTTAATTAATTTTCTTTTGATTTCTTTC
1 TTTTATTGAATTAATTTTCTTTTGATTTCTTTC
*
36239005 TTTTATTGATTTAATTTAT-TTTT-ATTTCTTTC
1 TTTTATTGAATTAATTT-TCTTTTGATTTCTTTC
36239037 TTTT
1 TTTT
36239041 GTCGCAGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 13 0.39
33 19 0.58
34 1 0.03
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.72
Consensus pattern (33 bp):
TTTTATTGAATTAATTTTCTTTTGATTTCTTTC
Found at i:36241008 original size:12 final size:12
Alignment explanation
Indices: 36240991--36241021 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
36240981 AAACATTAGA
*
36240991 TCATTTTGTCAT
1 TCATTTTGTCAC
36241003 TCATTTTGTCAC
1 TCATTTTGTCAC
36241015 TCATTTT
1 TCATTTT
36241022 TCCATGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.19, G:0.06, T:0.58
Consensus pattern (12 bp):
TCATTTTGTCAC
Found at i:36242817 original size:40 final size:40
Alignment explanation
Indices: 36242751--36242917 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
36242741 AAATTGAATG
* * *
36242751 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36242790 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
36242830 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36242870 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36242910 ATATCCGG
1 ATATCCGG
36242918 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36250814 original size:40 final size:40
Alignment explanation
Indices: 36250748--36250914 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
36250738 AAATTGAATG
* * *
36250748 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36250787 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
36250827 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36250867 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36250907 ATATCCGG
1 ATATCCGG
36250915 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36259374 original size:9 final size:10
Alignment explanation
Indices: 36259362--36259415 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
36259352 TACGTGGGAT
36259362 ATGATAT-AC
1 ATGATATGAC
*
36259371 ATGAT-TGAT
1 ATGATATGAC
36259380 ATGATATGCAC
1 ATGATATG-AC
*
36259391 ATGATATG-T
1 ATGATATGAC
36259400 ATGATATGCAC
1 ATGATATG-AC
36259411 ATGAT
1 ATGAT
36259416 GTATTCATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
8 1 0.03
9 19 0.53
10 2 0.06
11 14 0.39
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:36259384 original size:5 final size:5
Alignment explanation
Indices: 36259359--36259407 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
36259349 TGATACGTGG
* *
36259359 GATAT GATAT -ACAT GAT-T GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
36259407 G
1 G
36259408 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
4 11 0.31
5 21 0.58
6 4 0.11
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (5 bp):
GATAT
Found at i:36259394 original size:20 final size:21
Alignment explanation
Indices: 36259359--36259415 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
36259349 TGATACGTGG
36259359 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
36259377 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
36259398 G-TATGATATGCACATGAT
1 GATATGATATGCACATGAT
36259416 GTATTCATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.28
20 24 0.67
21 2 0.06
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:36259636 original size:31 final size:31
Alignment explanation
Indices: 36259601--36259664 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36259591 CGTTTACAGT
36259601 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
36259632 AAAGGGTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36259663 AA
1 AA
36259665 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36262809 original size:24 final size:24
Alignment explanation
Indices: 36262774--36262824 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
36262764 GGTTTATAAG
*
36262774 ACCAAGTATTTCTCCGTGGGGCGC
1 ACCAAGTATTTCCCCGTGGGGCGC
*
36262798 ACCAAGTGTTTCCCCGTGGGGCGC
1 ACCAAGTATTTCCCCGTGGGGCGC
36262822 ACC
1 ACC
36262825 GGTACTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.33, G:0.29, T:0.22
Consensus pattern (24 bp):
ACCAAGTATTTCCCCGTGGGGCGC
Found at i:36267496 original size:31 final size:31
Alignment explanation
Indices: 36267458--36267521 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36267448 CCTTTTCATA
36267458 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
36267489 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
36267520 TT
1 TT
36267522 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:36267764 original size:24 final size:24
Alignment explanation
Indices: 36267713--36267854 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
36267703 GCTTTATCAT
*
36267713 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
36267738 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
36267762 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
36267785 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
36267808 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
36267832 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36267855 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 16 0.15
23 12 0.11
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36267801 original size:46 final size:48
Alignment explanation
Indices: 36267713--36267853 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 48
36267703 GCTTTATCAT
* *
36267713 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
36267762 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
36267808 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
36267854 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 37 0.44
47 12 0.14
48 24 0.28
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:36267935 original size:11 final size:11
Alignment explanation
Indices: 36267905--36267958 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
36267895 TATGATTACC
36267905 TCATGTGCATA
1 TCATGTGCATA
*
36267916 TCA--TACATA
1 TCATGTGCATA
36267925 TCATGTGCATA
1 TCATGTGCATA
*
36267936 TCA--TACAT-
1 TCATGTGCATA
36267944 TCATGTGCATA
1 TCATGTGCATA
36267955 TCAT
1 TCAT
36267959 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:36267949 original size:19 final size:20
Alignment explanation
Indices: 36267905--36267963 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
36267895 TATGATTACC
36267905 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36267925 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
36267944 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36267964 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:36268038 original size:25 final size:25
Alignment explanation
Indices: 36268006--36268053 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36267996 ATACATAAAC
* * *
36268006 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36268031 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36268054 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36275602 original size:31 final size:31
Alignment explanation
Indices: 36275564--36275627 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36275554 CCTTTTCATA
36275564 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
36275595 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
36275626 TT
1 TT
36275628 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:36275870 original size:24 final size:24
Alignment explanation
Indices: 36275819--36275960 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
36275809 GCTTTATCAT
*
36275819 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
36275844 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
36275868 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
36275891 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
36275914 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
36275938 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36275961 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 16 0.15
23 12 0.11
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36275907 original size:46 final size:48
Alignment explanation
Indices: 36275819--36275959 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 48
36275809 GCTTTATCAT
* *
36275819 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
36275868 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
36275914 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
36275960 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 37 0.44
47 12 0.14
48 24 0.28
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:36276041 original size:11 final size:11
Alignment explanation
Indices: 36276011--36276064 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
36276001 TATGATTACC
36276011 TCATGTGCATA
1 TCATGTGCATA
*
36276022 TCA--TACATA
1 TCATGTGCATA
36276031 TCATGTGCATA
1 TCATGTGCATA
*
36276042 TCA--TACAT-
1 TCATGTGCATA
36276050 TCATGTGCATA
1 TCATGTGCATA
36276061 TCAT
1 TCAT
36276065 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:36276055 original size:19 final size:20
Alignment explanation
Indices: 36276011--36276069 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
36276001 TATGATTACC
36276011 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36276031 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
36276050 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36276070 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:36276144 original size:25 final size:25
Alignment explanation
Indices: 36276112--36276159 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36276102 ATACATAAAC
* * *
36276112 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36276137 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36276160 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36278395 original size:20 final size:20
Alignment explanation
Indices: 36278360--36278432 Score: 61
Period size: 18 Copynumber: 4.0 Consensus size: 20
36278350 TGATACGTGG
36278360 GATATGATAT--ACATGATT
1 GATATGATATGCACATGATT
36278378 GATATGATATGCACATGA-T
1 GATATGATATGCACATGATT
*
36278397 -ATGT-A-ATGCACATGATAT
1 GATATGATATGCACATGAT-T
* *
36278415 G-TATGAAATGTACATGAT
1 GATATGATATGCACATGAT
36278433 GTATTCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
16 10 0.22
17 1 0.02
18 16 0.36
19 2 0.04
20 16 0.36
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.34
Consensus pattern (20 bp):
GATATGATATGCACATGATT
Found at i:36278398 original size:16 final size:15
Alignment explanation
Indices: 36278377--36278419 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 15
36278367 TATACATGAT
36278377 TGATATGATATGCACA
1 TGATATG-TATGCACA
36278393 TGATATGTAATGCACA
1 TGATATGT-ATGCACA
36278409 TGATATGTATG
1 TGATATGTATG
36278420 AAATGTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (15 bp):
TGATATGTATGCACA
Found at i:36278554 original size:48 final size:47
Alignment explanation
Indices: 36278481--36278603 Score: 194
Period size: 48 Copynumber: 2.6 Consensus size: 47
36278471 GAAGGAAGTG
* *
36278481 GAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 GAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTAAGCCCCAATTAT
36278528 GATAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTAAGCCCCAATTAT
1 GA-AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTAAGCCCCAATTAT
*
36278577 TAAAAGGGCTT-TGCCCCAGTTATTAAA
1 GAAAAGGGCTTATGCCCCAGTTATTAAA
36278604 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
46 3 0.04
47 15 0.21
48 32 0.45
49 21 0.30
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (47 bp):
GAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTAAGCCCCAATTAT
Found at i:36278604 original size:23 final size:24
Alignment explanation
Indices: 36278482--36278610 Score: 199
Period size: 23 Copynumber: 5.4 Consensus size: 24
36278472 AAGGAAGTGG
36278482 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36278506 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
36278529 ATAAAGGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATT
* *
36278554 AAAAGGGCTTAAGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36278578 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36278601 AAAAGAGGCT
1 AAAAG-GGCT
36278611 AGGCCTCTAG
Statistics
Matches: 96, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
23 38 0.40
24 35 0.36
25 23 0.24
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36278623 original size:72 final size:72
Alignment explanation
Indices: 36278482--36278624 Score: 193
Period size: 72 Copynumber: 2.0 Consensus size: 72
36278472 AAGGAAGTGG
* * *
36278482 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCC
1 AAAAGGGCTTAAGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCC
36278547 AGTTATT
66 AGTTATT
*
36278554 AAAAGGGCTTAAGCCCCAATTATTAAAAGGGCTT-TGCCCCAGTTATTA-AAAGAGGC-TAGGCC
1 AAAAGGGCTTAAGCCCCAATTATT-AAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTAGGCC
*
36278616 TCTAGTTAT
64 -CCAGTTAT
36278625 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
71 9 0.14
72 45 0.71
73 9 0.14
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (72 bp):
AAAAGGGCTTAAGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCC
AGTTATT
Found at i:36278853 original size:31 final size:31
Alignment explanation
Indices: 36278818--36278881 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36278808 CGTTTACAGT
*
36278818 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
36278849 AAAGGGTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36278880 AA
1 AA
36278882 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36284414 original size:14 final size:14
Alignment explanation
Indices: 36284395--36284421 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36284385 TAGGCATGTC
36284395 ATATGAAAATTTTG
1 ATATGAAAATTTTG
36284409 ATATGAAAATTTT
1 ATATGAAAATTTT
36284422 ATTGATTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATATGAAAATTTTG
Found at i:36285516 original size:20 final size:20
Alignment explanation
Indices: 36285493--36285555 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
36285483 GTTGGACGGC
36285493 TTGGGAGGGAAATAATGGAT
1 TTGGGAGGGAAATAATGGAT
* *
36285513 TTGGG-GAGAAAAGTAA--G-C
1 TTGGGAG-GGAAA-TAATGGAT
36285531 TTGGGAGGGAAATAATGGAT
1 TTGGGAGGGAAATAATGGAT
36285551 TTGGG
1 TTGGG
36285556 GAGAAAAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 9 0.27
19 4 0.12
20 14 0.42
21 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.24
Consensus pattern (20 bp):
TTGGGAGGGAAATAATGGAT
Found at i:36285520 original size:21 final size:21
Alignment explanation
Indices: 36285495--36285558 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
36285485 TGGACGGCTT
36285495 GGGAGGGAAATAATGGATTTG
1 GGGAGGGAAATAATGGATTTG
* *
36285516 GGGA-GAAAAGTAA--G-CTT-
1 GGGAGGGAAA-TAATGGATTTG
36285533 GGGAGGGAAATAATGGATTTG
1 GGGAGGGAAATAATGGATTTG
36285554 GGGAG
1 GGGAG
36285559 AAAAGTAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 2 0.06
20 6 0.18
21 12 0.36
ACGTcount: A:0.34, C:0.02, G:0.44, T:0.20
Consensus pattern (21 bp):
GGGAGGGAAATAATGGATTTG
Found at i:36285533 original size:38 final size:38
Alignment explanation
Indices: 36285491--36285567 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
36285481 ATGTTGGACG
36285491 GCTTGGGAGGGAAATAATGGATTTGGGGAGAAAAGTAA
1 GCTTGGGAGGGAAATAATGGATTTGGGGAGAAAAGTAA
36285529 GCTTGGGAGGGAAATAATGGATTTGGGGAGAAAAGTAA
1 GCTTGGGAGGGAAATAATGGATTTGGGGAGAAAAGTAA
36285567 G
1 G
36285568 GAGGGGAGGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.03, G:0.40, T:0.21
Consensus pattern (38 bp):
GCTTGGGAGGGAAATAATGGATTTGGGGAGAAAAGTAA
Found at i:36285561 original size:19 final size:19
Alignment explanation
Indices: 36285501--36285561 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
36285491 GCTTGGGAGG
36285501 GAAATAATGGATTTGGGGA
1 GAAATAATGGATTTGGGGA
* *
36285520 GAAAAGTAA--G-CTTGGGAGG
1 G-AAA-TAATGGATTTGGG-GA
36285539 GAAATAATGGATTTGGGGA
1 GAAATAATGGATTTGGGGA
36285558 GAAA
1 GAAA
36285562 AGTAAGGAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
17 3 0.09
18 8 0.25
19 10 0.31
20 8 0.25
21 3 0.09
ACGTcount: A:0.39, C:0.02, G:0.38, T:0.21
Consensus pattern (19 bp):
GAAATAATGGATTTGGGGA
Found at i:36285575 original size:38 final size:38
Alignment explanation
Indices: 36285495--36285576 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
36285485 TGGACGGCTT
**
36285495 GGGAGGGAAATAATGGATTTGGGGAGAAAAGTAAGCTT
1 GGGAGGGAAATAATGGATTTGGGGAGAAAAGTAAGCAG
*
36285533 GGGAGGGAAATAATGGATTTGGGGAGAAAAGTAAGGAG
1 GGGAGGGAAATAATGGATTTGGGGAGAAAAGTAAGCAG
36285571 GGGAGG
1 GGGAGG
36285577 CATTTGGGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.37, C:0.01, G:0.45, T:0.17
Consensus pattern (38 bp):
GGGAGGGAAATAATGGATTTGGGGAGAAAAGTAAGCAG
Found at i:36295156 original size:21 final size:21
Alignment explanation
Indices: 36295132--36295207 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
36295122 CATCATGAAC
36295132 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
36295153 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
*
36295177 TCAGACCACAACTCAATGCGT
1 TCAGACCACAACTCAATGAGT
*
36295198 TCAGATCACA
1 TCAGACCACA
36295208 TAGTTCCTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
20 2 0.05
21 18 0.45
22 4 0.10
23 4 0.10
24 10 0.25
25 2 0.05
ACGTcount: A:0.37, C:0.28, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:36295166 original size:45 final size:45
Alignment explanation
Indices: 36295116--36295203 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
36295106 AAACATGTGC
36295116 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGT
* *
36295161 CACATATATCATGAACTCAGACCACAACTCAATGCGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
36295204 CACATAGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGT
Found at i:36299275 original size:46 final size:46
Alignment explanation
Indices: 36299222--36299397 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36299212 TATTTGGGCA
36299222 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
36299268 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
36299315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
36299361 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36299398 GCGGTTACAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:36299377 original size:93 final size:93
Alignment explanation
Indices: 36299218--36299389 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36299208 GGGATATTTG
* *
36299218 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
36299283 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
36299311 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
36299376 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
36299390 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:36307459 original size:40 final size:40
Alignment explanation
Indices: 36307400--36307541 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
36307390 AAATTGAATG
* * *
36307400 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
36307440 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
36307480 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
36307520 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
36307542 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:36307542 original size:40 final size:39
Alignment explanation
Indices: 36307439--36307567 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
36307429 TGCTGGAAAT
* * *
36307439 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
36307479 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
36307519 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
36307559 TATATCCGG
1 TATATCCGG
36307568 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:36316328 original size:40 final size:40
Alignment explanation
Indices: 36316269--36316410 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
36316259 AAATTGAATG
* * *
36316269 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
36316309 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
36316349 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
36316389 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
36316411 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:36316411 original size:40 final size:39
Alignment explanation
Indices: 36316308--36316436 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
36316298 TGCTGGAAAT
* * *
36316308 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
36316348 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
36316388 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
36316428 TATATCCGG
1 TATATCCGG
36316437 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:36324822 original size:26 final size:26
Alignment explanation
Indices: 36324799--36324852 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36324789 CACCAATATC
*
36324799 GCAGCAAAGCTGCCAGTAATAATAAT
1 GCAGCAAAGCTGCCAGAAATAATAAT
**
36324825 GCAGCGCAGCTGCCAGAAATAATGAAT
1 GCAGCAAAGCTGCCAGAAATAAT-AAT
36324852 G
1 G
36324853 TGGAAAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGAAATAATAAT
Found at i:36325087 original size:27 final size:27
Alignment explanation
Indices: 36325057--36325189 Score: 108
Period size: 27 Copynumber: 5.3 Consensus size: 27
36325047 GGGCATACTC
*
36325057 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
36325084 GTCATTTTACCTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
36325111 GTCA---T----T--GGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
36325129 GTCTA-TTTACCCCAC-GGGGACATTACA
1 GTC-ATTTTACCCTACAGGGG-CATTACG
36325156 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
36325183 GTTATTT
1 GTCATTT
36325190 CTATCCATTA
Statistics
Matches: 86, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
18 13 0.15
19 1 0.01
20 1 0.01
21 1 0.01
24 1 0.01
26 5 0.06
27 60 0.70
28 4 0.05
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:36325138 original size:45 final size:45
Alignment explanation
Indices: 36325073--36325161 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
36325063 TTACCCTATA
* ** *
36325073 GGGGCATTACGGTCATTTTACCTTACAGGGG-CATTACGGTCATTG
1 GGGGCATTACAGTCATTTTACCCCAC-GGGGACATTACAGTCATTG
36325118 GGGGCATTACAGTC-TATTTACCCCACGGGGACATTACAGTCATT
1 GGGGCATTACAGTCAT-TTTACCCCACGGGGACATTACAGTCATT
36325162 TTACCCTACA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 5 0.13
45 33 0.87
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (45 bp):
GGGGCATTACAGTCATTTTACCCCACGGGGACATTACAGTCATTG
Found at i:36327106 original size:19 final size:20
Alignment explanation
Indices: 36327082--36327119 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36327072 GGTACCACCA
36327082 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
36327101 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
36327120 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:36327506 original size:93 final size:93
Alignment explanation
Indices: 36327347--36327517 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36327337 CGCCCTAAGT
* *
36327347 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36327412 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
36327440 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36327505 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36327518 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36327514 original size:46 final size:46
Alignment explanation
Indices: 36327342--36327514 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
36327332 TAACCCGCCC
* * * *
36327342 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
36327388 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
36327436 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
36327481 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36327515 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:36334624 original size:19 final size:20
Alignment explanation
Indices: 36334600--36334637 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36334590 GGTACCACCA
36334600 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
36334619 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
36334638 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:36334977 original size:93 final size:93
Alignment explanation
Indices: 36334867--36335037 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36334857 GCCCCTAAGT
* *
36334867 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36334932 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
36334960 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36335025 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36335038 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36335034 original size:46 final size:46
Alignment explanation
Indices: 36334862--36335034 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
36334852 AACCCGCCCC
* * * *
36334862 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
36334908 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
36334956 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
36335001 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36335035 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:36340910 original size:22 final size:22
Alignment explanation
Indices: 36340885--36340928 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
36340875 CATGCCTATT
36340885 TGGTACAAGGGACACACCCGTG
1 TGGTACAAGGGACACACCCGTG
* *
36340907 TGGTCCAAGGGACACGCCCGTG
1 TGGTACAAGGGACACACCCGTG
36340929 CTACAGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.30, G:0.34, T:0.14
Consensus pattern (22 bp):
TGGTACAAGGGACACACCCGTG
Found at i:36343373 original size:22 final size:22
Alignment explanation
Indices: 36343338--36343383 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
36343328 AATGTCATAG
*
36343338 CACTAGAAAGTGGGTATCGCAA
1 CACTAGAAAGTGGGTATCACAA
36343360 CACTGAGAAA-TGGGTATCACAA
1 CACT-AGAAAGTGGGTATCACAA
36343382 CA
1 CA
36343384 TTGATTGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (22 bp):
CACTAGAAAGTGGGTATCACAA
Found at i:36346788 original size:42 final size:42
Alignment explanation
Indices: 36346742--36346899 Score: 183
Period size: 42 Copynumber: 3.7 Consensus size: 42
36346732 GACTATGTGC
* * * *
36346742 AAGACCATATCTGGGATATGGCATCT-ATATAAGACTGCGTGT
1 AAGACCATATCTGAGATATGGCAT-TGATATGAGATTACGTGT
* * *
36346784 AAGACCATATCTGGGATATGGCTTTGATATGAGATTTCGTGT
1 AAGACCATATCTGAGATATGGCATTGATATGAGATTACGTGT
* * * *
36346826 AAGACCATAGCTGAGTTATTGGCATTGATACGAGATTACATGT
1 AAGACCATATCTGAGATA-TGGCATTGATATGAGATTACGTGT
*
36346869 AAGACCATATCTGAGATATGGCATTGGTATG
1 AAGACCATATCTGAGATATGGCATTGATATG
36346900 GTACCAAGTG
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 62 0.63
43 36 0.36
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
AAGACCATATCTGAGATATGGCATTGATATGAGATTACGTGT
Found at i:36350149 original size:24 final size:24
Alignment explanation
Indices: 36350122--36350195 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
36350112 TATTTCGTAT
36350122 CATGTTGCCATGATATCTTTCAAC
1 CATGTTGCCATGATATCTTTCAAC
* *
36350146 CATGGTT--C-T-ACA-CATTTCGTAC
1 CAT-GTTGCCATGATATC-TTTC-AAC
*
36350168 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGATATCTTTCAAC
36350192 CATG
1 CATG
36350196 GTCTTACACA
Statistics
Matches: 37, Mismatches: 5, Indels: 16
0.64 0.09 0.28
Matches are distributed among these distances:
20 1 0.03
21 9 0.24
22 6 0.16
23 2 0.05
24 10 0.27
25 8 0.22
26 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (24 bp):
CATGTTGCCATGATATCTTTCAAC
Found at i:36350209 original size:46 final size:46
Alignment explanation
Indices: 36349886--36350209 Score: 391
Period size: 46 Copynumber: 6.9 Consensus size: 46
36349876 TTATCTTCGA
* * * * * *
36349886 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-AAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCGTAT
* * * ** ***
36349932 CATGTTGTCATGGTATCTTTTAACCATAGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CGTAT
36349979 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTGTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-----GTAT
*
36350030 CATGTTGCCATGGTATCTTTCAACCATGGTCTTCCACATTTCGTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTAT
* *
36350076 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACATATTTCGTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTAT
* *
36350122 CATGTTGCCATGATATCTTTCAACCATGGT-TCTACACATTTCGTAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCT-TACACATTTCGTAT
36350168 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
36350210 ATTTCAGAAA
Statistics
Matches: 242, Mismatches: 27, Indels: 18
0.84 0.09 0.06
Matches are distributed among these distances:
45 4 0.02
46 158 0.65
47 38 0.16
51 42 0.17
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTAT
Found at i:36352348 original size:19 final size:19
Alignment explanation
Indices: 36352313--36352351 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36352303 CCTTCCTTTT
*
36352313 ATACTAAATAAATAATAAA
1 ATACTAAATAAAAAATAAA
36352332 ATACT-AATAAAAAAATAAA
1 ATACTAAAT-AAAAAATAAA
36352351 A
1 A
36352352 AAATATCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (19 bp):
ATACTAAATAAAAAATAAA
Found at i:36355285 original size:46 final size:47
Alignment explanation
Indices: 36355227--36355926 Score: 774
Period size: 46 Copynumber: 14.7 Consensus size: 47
36355217 CAACATGATA
* * * * *
36355227 CCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTT
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* ** * ** *
36355273 CTATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCATCATGTAG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* *
36355320 CCATGGCATCTTTCAACTATGGTCTTACACA-TTTCATATCGTATCACGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATC--AT---GTTG
** * *
36355371 CCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
36355417 CCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATTGTATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTC--A---TATCATGTTG
*
36355468 CCATGGTATCTTTCAACCATGTTCTTACACA-TTTCATATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* *
36355514 CCATGGTATCTTTCAACCACGGTCTTACACA-TTTCATATCATGTTT
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* ** * ***
36355560 CTATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* * *
36355607 CCATGGCATCTTTCAACTATGGTCTTACACATTTCATATCGTATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACA-TT--T-TCATATCATGTTG
* ** * *
36355658 CCATGGTATCTTTCAACCATGGTTTTATTCA-TTTCATGTCACGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
*
36355704 CCATGGTATCTTTCAACCGTGGTCTTACACA-TTTCATATTGTATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTC--A---TATCATGTTG
*
36355755 CCATGGTATCTTTCAACCATGTTCTTACACA-TTTCATATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
*
36355801 CCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTT
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
*
36355847 CCATGGTATCTTTCAACCATGGTCTTACACATTTT-GTATCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
* *
36355893 CCATGGTATCTTTCAACCATGATCATACACATTT
1 CCATGGTATCTTTCAACCATGGTCTTACACATTT
36355927 CATTTCAGAA
Statistics
Matches: 560, Mismatches: 72, Indels: 44
0.83 0.11 0.07
Matches are distributed among these distances:
46 321 0.57
47 72 0.13
48 6 0.01
49 4 0.01
50 1 0.00
51 156 0.28
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (47 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCATGTTG
Found at i:36355450 original size:97 final size:97
Alignment explanation
Indices: 36355227--36355929 Score: 914
Period size: 97 Copynumber: 7.4 Consensus size: 97
36355217 CAACATGATA
* * * * * *
36355227 CCATAGTATCTTTCAACTATGGTCTTACTCA-TT--T-TC-TGTCATGTTTCTATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
** *
36355287 AACCATGGTCTTATTCATTTCCCCATCATGTAG
66 AACCATGGTCTTATTCATTT-CATATCATGTTG
* * *
36355320 CCATGGCATCTTTCAACTATGGTCTTACACATTTCATATCGTATCACGTTGCCATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
* *
36355385 AACCATGGTCTTATTCATTTCATGTCACGTTG
66 AACCATGGTCTTATTCATTTCATATCATGTTG
*
36355417 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
* **
36355482 AACCATGTTCTTACACATTTCATATCATGTTG
66 AACCATGGTCTTATTCATTTCATATCATGTTG
* * *
36355514 CCATGGTATCTTTCAACCACGGTCTTACACATTTC--A---TATCATGTTTCTATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
***
36355574 AACCATGGTCTTATTCATTTCCCCGTCATGTTG
66 AACCATGGTCTTATTCATTT-CATATCATGTTG
* *
36355607 CCATGGCATCTTTCAACTATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
* * *
36355672 AACCATGGTTTTATTCATTTCATGTCACGTTG
66 AACCATGGTCTTATTCATTTCATATCATGTTG
* *
36355704 CCATGGTATCTTTCAACCGTGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
* **
36355769 AACCATGTTCTTACACATTTCATATCATGTTG
66 AACCATGGTCTTATTCATTTCATATCATGTTG
*
36355801 CCATGGTATCTTTCAACCATGGTCTTACACATTTC--A---TATCATGTTTCCATGGTATCTTTC
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
** **
36355861 AACCATGGTCTTACACATTTTGTATCATGTTG
66 AACCATGGTCTTATTCATTTCATATCATGTTG
* *
36355893 CCATGGTATCTTTCAACCATGATCATACACATTTCAT
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
36355930 TTCAGAAAGC
Statistics
Matches: 541, Mismatches: 56, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
92 124 0.23
93 69 0.13
94 2 0.00
95 3 0.01
96 1 0.00
97 261 0.48
98 81 0.15
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (97 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGTATCATGTTGCCATGGTATCTTTC
AACCATGGTCTTATTCATTTCATATCATGTTG
Found at i:36355748 original size:287 final size:287
Alignment explanation
Indices: 36355227--36355929 Score: 1203
Period size: 287 Copynumber: 2.5 Consensus size: 287
36355217 CAACATGATA
* * * *
36355227 CCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTTCTATGGTATCTTTCAACC
1 CCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTTCTATGGTATCTTTCAACC
*
36355291 ATGGTCTTATTCATTTCCCCATCATGTAGCCATGGCATCTTTCAACTATGGTCTTACACATTTCA
65 ATGGTCTTATTCATTTCCCCATCATGTTGCCATGGCATCTTTCAACTATGGTCTTACACATTTCA
36355356 TATCGTATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCAT
130 TATCGTATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCAT
36355421 GGTATCTTTCAACCATGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTCAACC
195 GGTATCTTTCAACCATGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTCAACC
36355486 ATGTTCTTACACATTTCATATCATGTTG
260 ATGTTCTTACACATTTCATATCATGTTG
*
36355514 CCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCATGTTTCTATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTTCTATGGTATCTTTCAACCA
*
36355579 TGGTCTTATTCATTTCCCCGTCATGTTGCCATGGCATCTTTCAACTATGGTCTTACACATTTCAT
66 TGGTCTTATTCATTTCCCCATCATGTTGCCATGGCATCTTTCAACTATGGTCTTACACATTTCAT
* *
36355644 ATCGTATCATGTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCATGTCACGTTGCCATG
131 ATCGTATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATG
*
36355709 GTATCTTTCAACCGTGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTCAACCA
196 GTATCTTTCAACCATGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTCAACCA
36355774 TGTTCTTACACATTTCATATCATGTTG
261 TGTTCTTACACATTTCATATCATGTTG
*
36355801 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTTCCATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTTCTATGGTATCTTTCAACCA
** *** * * * *
36355866 TGGTCTTACACATTT-TGTATCATGTTGCCATGGTATCTTTCAACCATGATCATACACATTTCAT
66 TGGTCTTATTCATTTCCCCATCATGTTGCCATGGCATCTTTCAACTATGGTCTTACACATTTCAT
36355930 TTCAGAAAGC
Statistics
Matches: 393, Mismatches: 22, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
286 45 0.11
287 348 0.89
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (287 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTTCTATGGTATCTTTCAACCA
TGGTCTTATTCATTTCCCCATCATGTTGCCATGGCATCTTTCAACTATGGTCTTACACATTTCAT
ATCGTATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATG
GTATCTTTCAACCATGGTCTTACACATTTCATATTGTATCATGTTGCCATGGTATCTTTCAACCA
TGTTCTTACACATTTCATATCATGTTG
Found at i:36357619 original size:24 final size:21
Alignment explanation
Indices: 36357592--36357638 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
36357582 CCCTTATTTT
36357592 CTTTCTCTATACTATTTCTCATCA
1 CTTTCTCT-TA-T-TTTCTCATCA
*
36357616 CTTTCTCTTATTTTCTCTTCA
1 CTTTCTCTTATTTTCTCATCA
36357637 CT
1 CT
36357639 AACATGTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 1 0.05
23 2 0.09
24 8 0.36
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.55
Consensus pattern (21 bp):
CTTTCTCTTATTTTCTCATCA
Found at i:36362862 original size:10 final size:10
Alignment explanation
Indices: 36362847--36362874 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36362837 ATAGTACATG
36362847 TTTACTTTGT
1 TTTACTTTGT
36362857 TTTACTTTGT
1 TTTACTTTGT
36362867 TTTACTTT
1 TTTACTTT
36362875 TCCCCTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:36364642 original size:17 final size:18
Alignment explanation
Indices: 36364603--36364646 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
36364593 TATTGAATAG
36364603 TAAAATTTAATTAAAAAT
1 TAAAATTTAATTAAAAAT
36364621 TAAAATTTAA-T-AAAAT
1 TAAAATTTAATTAAAAAT
36364637 TCAAAATTTA
1 T-AAAATTTA
36364647 GTAATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.24
17 9 0.36
18 10 0.40
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATTAAAAAT
Found at i:36391313 original size:15 final size:15
Alignment explanation
Indices: 36391289--36391325 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
36391279 TTTTTATAAT
36391289 AATAAAATAAAAGAA
1 AATAAAATAAAAGAA
*
36391304 AATAACATAAAAG-A
1 AATAAAATAAAAGAA
36391318 AATAAAAT
1 AATAAAAT
36391326 TTCAAGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (15 bp):
AATAAAATAAAAGAA
Found at i:36396242 original size:24 final size:23
Alignment explanation
Indices: 36396194--36396243 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
36396184 TATGAAAATA
*
36396194 ATATAATAAATATGAGATTTTTT
1 ATATAATAAATATGAGATTTGTT
*
36396217 ATATGAATATATATGA-ATTGTGTT
1 ATAT-AATAAATATGAGATT-TGTT
36396241 ATA
1 ATA
36396244 ATTGGGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (23 bp):
ATATAATAAATATGAGATTTGTT
Found at i:36396302 original size:13 final size:13
Alignment explanation
Indices: 36396284--36396310 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36396274 ATAATGAATT
36396284 TAACTTGTTAATA
1 TAACTTGTTAATA
36396297 TAACTTGTTAATA
1 TAACTTGTTAATA
36396310 T
1 T
36396311 GAATAGCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TAACTTGTTAATA
Found at i:36402321 original size:7 final size:7
Alignment explanation
Indices: 36402309--36402333 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36402299 CTATAAAATG
36402309 AAAATTA
1 AAAATTA
36402316 AAAATTA
1 AAAATTA
36402323 AAAATTA
1 AAAATTA
36402330 AAAA
1 AAAA
36402334 GATCAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:36404941 original size:3 final size:3
Alignment explanation
Indices: 36404935--36404967 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
36404925 TACTACTACT
*
36404935 ATC ATC ATC ATC GTC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
36404968 TTATTTCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:36405117 original size:3 final size:3
Alignment explanation
Indices: 36405103--36405172 Score: 131
Period size: 3 Copynumber: 23.3 Consensus size: 3
36405093 CCATGAGTAG
*
36405103 TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
36405151 TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT T
36405173 TATAACATAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:36417759 original size:46 final size:47
Alignment explanation
Indices: 36417653--36417774 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
36417643 TGTCTTCGAC
** * *
36417653 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
36417703 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
* *
36417749 ATGGACTTACAAGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
36417775 CTCTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:36424665 original size:27 final size:27
Alignment explanation
Indices: 36424607--36425001 Score: 237
Period size: 27 Copynumber: 14.7 Consensus size: 27
36424597 GTAGTTTACC
** * * *
36424607 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
36424634 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
36424661 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
36424688 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ****** * *
36424715 GAATTATTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
36424742 AAATTACTAAAATACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
36424769 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* *
36424796 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * *
36424822 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
36424849 AAATTA-CAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTATA
* *
36424876 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
36424903 AAATTACCAAAATACCACTAG-TTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
36424930 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
36424957 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
*
36424984 AAGTTA-CAGAAATACCCT
1 AAATTACCA-AAATACCCT
36425002 TGACTTTCTA
Statistics
Matches: 307, Mismatches: 49, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
26 29 0.09
27 275 0.90
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:36424785 original size:54 final size:54
Alignment explanation
Indices: 36424727--36425084 Score: 278
Period size: 54 Copynumber: 6.6 Consensus size: 54
36424717 ATTATTGTTT
** *
36424727 TACCCTTGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* ** * ** * *
36424781 TACCCTCGATCAGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTGCTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* * **
36424834 TACCCTTGGTTTGTAAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCA-AAATACCCTCGATTTACAAAATTACCAAAA
* * *** *
36424888 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTAG-TTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAATACC-CTCGATTTACAAAATTACCAAAA
** *
36424942 TACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTC-GATTTACAAAATTACCA-AAA
* *** * * * **
36424996 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGA-TTTGT-AAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* * * *
36425052 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCT
36425085 TGTAGGATGA
Statistics
Matches: 237, Mismatches: 54, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
52 2 0.01
53 43 0.18
54 142 0.60
55 13 0.05
56 37 0.16
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
Found at i:36424812 original size:81 final size:80
Alignment explanation
Indices: 36424727--36425001 Score: 299
Period size: 81 Copynumber: 3.4 Consensus size: 80
36424717 ATTATTGTTT
* * ** * *
36424727 TACCCTTGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATC
1 TACCCCTGATTTACAAAATTACTAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCTCAATT
*
36424792 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
** * *
36424808 TA-CCCT-AGTTTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTA-CAGAAATACCCTCAA
1 TACCCCTGA-TTTACAAAATTACTAAAATACCC-TAGTTTGTAAAATTACCA-AAATACCCTCAA
36424870 TTTGTAAAATTACCAAAA
63 TTTGTAAAATTACCAAAA
** * * *
36424888 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCTCAAT
36424952 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
36424969 TACCCCTGATTTACAAAGTTAC-AGAAATACCCT
1 TACCCCTGATTTACAAAATTACTA-AAATACCCT
36425002 TGACTTTCTA
Statistics
Matches: 168, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
79 3 0.02
80 65 0.39
81 97 0.58
82 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
TACCCCTGATTTACAAAATTACTAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:36425051 original size:27 final size:27
Alignment explanation
Indices: 36425012--36425063 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36425002 TGACTTTCTA
36425012 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
36425039 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
36425064 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Done.