Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 137 of 444
Found at i:36425138 original size:27 final size:27
Alignment explanation
Indices: 36425108--36425204 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
36425098 GACTAAAATA
* *
36425108 CCCCTATAAGGTAAAAAGACCGTAAAG
1 CCCCTGTAGGGTAAAAAGACCGTAAAG
*
36425135 CCCCTGTAGGGTAAAGAGACCGTAAAG
1 CCCCTGTAGGGTAAAAAGACCGTAAAG
** *
36425162 CCCCTGTAGGGTAAAGTGACCATAATA-
1 CCCCTGTAGGGTAAAAAGACCGTAA-AG
*
36425189 CCCCTGTATGGTAAAA
1 CCCCTGTAGGGTAAAA
36425205 TGACGAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 61 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAAAGACCGTAAAG
Found at i:36426099 original size:23 final size:24
Alignment explanation
Indices: 36426020--36426195 Score: 293
Period size: 24 Copynumber: 7.4 Consensus size: 24
36426010 GAGGAAGTGC
36426020 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36426044 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36426068 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36426092 -AAAGGGCTTATGCCCCAGTAATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36426115 -AAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36426138 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
36426162 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36426186 AAAAGAGGCT
1 AAAAG-GGCT
36426196 AGGCCTCTAG
Statistics
Matches: 144, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
23 43 0.30
24 97 0.67
25 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36426474 original size:31 final size:31
Alignment explanation
Indices: 36426397--36426475 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
36426387 CGTTTACAGT
*
36426397 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
36426428 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36426459 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
36426476 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:36428720 original size:46 final size:47
Alignment explanation
Indices: 36428614--36428735 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
36428604 TGTCTTCGAC
** * *
36428614 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
36428664 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
36428710 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
36428736 CTCTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:36430026 original size:39 final size:39
Alignment explanation
Indices: 36429983--36430083 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
36429973 AACATGTTTT
*
36429983 TGAGTATAGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
36430022 TGAGTATTGTGATATATGTTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
36430061 TGAGTATTGTGTTATATGCTTGA
1 TGAGTATTGTGATATATGCTTGA
36430084 TTATATATGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.47
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:36431215 original size:18 final size:19
Alignment explanation
Indices: 36431188--36431223 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36431178 TGGCTAAGTG
*
36431188 ACCCTGTTTTCA-ATTTTT
1 ACCCTATTTTCATATTTTT
36431206 ACCCTATTTTCATATTTT
1 ACCCTATTTTCATATTTT
36431224 GATTCAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.19, C:0.22, G:0.03, T:0.56
Consensus pattern (19 bp):
ACCCTATTTTCATATTTTT
Found at i:36431368 original size:19 final size:19
Alignment explanation
Indices: 36431346--36431385 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
36431336 GATTTAAAAG
36431346 TAAGTTTTTGAATTGAAAT
1 TAAGTTTTTGAATTGAAAT
36431365 TAAGTTTTTGAATTGAAAT
1 TAAGTTTTTGAATTGAAAT
36431384 TA
1 TA
36431386 TCTATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (19 bp):
TAAGTTTTTGAATTGAAAT
Found at i:36432390 original size:2 final size:2
Alignment explanation
Indices: 36432368--36432407 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
36432358 ACCATGACCA
* *
36432368 AT AT AT CAT AT AC AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36432408 AGCAATAGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:36433587 original size:43 final size:44
Alignment explanation
Indices: 36433532--36433647 Score: 134
Period size: 43 Copynumber: 2.7 Consensus size: 44
36433522 ATATCGTACA
* * *
36433532 ATGCCAAC-GTCCCAGACCTGGTCTTATATGTAA-T-CATATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACG-AATTACATATA-CG
*
36433575 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAATTACATATACG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGAATTACATATACG
*
36433618 ATGCCGA-TGTCCCAGACATGGTCTTACACG
1 ATGCCAACTGTCCCAGACATGGTCTTACACG
36433648 CTATCACTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
42 4 0.06
43 53 0.83
44 7 0.11
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACATGGTCTTACACGAATTACATATACG
Found at i:36441799 original size:35 final size:35
Alignment explanation
Indices: 36441748--36441819 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
36441738 ATTGGAACTA
* * *
36441748 AGACCATGTATGCAGAGTCAGATGGCTGTGTCGAC
1 AGACCATGTATGCAGAGTCACACGACTGTGTCGAC
*
36441783 AGACTATGTATGCAGAGTCACACGACTGTGTCGAC
1 AGACCATGTATGCAGAGTCACACGACTGTGTCGAC
36441818 AG
1 AG
36441820 GCCGTGTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (35 bp):
AGACCATGTATGCAGAGTCACACGACTGTGTCGAC
Found at i:36444896 original size:40 final size:40
Alignment explanation
Indices: 36444822--36445043 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
36444812 AACCCAAGTA
* * *
36444822 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
36444861 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
36444901 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
36444941 CCTTCAGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
36444981 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
36445021 TCTTCGGTACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36445044 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.07
40 154 0.92
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:36447307 original size:30 final size:30
Alignment explanation
Indices: 36447273--36447333 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
36447263 TGTCACAAGC
36447273 TTAATTTTATTTAAGCTAGGATGATTGCTT
1 TTAATTTTATTTAAGCTAGGATGATTGCTT
36447303 TTAATTTTATTTAAGCTAGGATGATTGCTT
1 TTAATTTTATTTAAGCTAGGATGATTGCTT
36447333 T
1 T
36447334 GATTAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51
Consensus pattern (30 bp):
TTAATTTTATTTAAGCTAGGATGATTGCTT
Found at i:36450451 original size:29 final size:29
Alignment explanation
Indices: 36450418--36450578 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
36450408 CCTCCGAACT
** * * *
36450418 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
36450447 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36450476 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36450505 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36450534 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36450563 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
36450579 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:36450480 original size:87 final size:87
Alignment explanation
Indices: 36450360--36450578 Score: 244
Period size: 87 Copynumber: 2.5 Consensus size: 87
36450350 TACTCGATTT
** * * ** * *
36450360 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * *
36450423 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* ** *
36450447 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
36450512 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
36450534 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
36450579 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 104 0.94
88 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:36466067 original size:28 final size:28
Alignment explanation
Indices: 36466036--36466091 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
36466026 CAAATTATTG
*
36466036 AGGATCACACTTAGTGTGTGAGACATCT
1 AGGATCACACTTAGTGTGTGACACATCT
*
36466064 AGGATGACACTTAGTGTGTGACACATCT
1 AGGATCACACTTAGTGTGTGACACATCT
36466092 GTGAAGGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (28 bp):
AGGATCACACTTAGTGTGTGACACATCT
Found at i:36466102 original size:28 final size:28
Alignment explanation
Indices: 36466042--36466109 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
36466032 ATTGAGGATC
* *
36466042 ACACTTAGTGTGTGAGACATCTAGGATG
1 ACACTTAGTGTGTGACACATCTAGGAAG
36466070 ACACTTAGTGTGTGACACATCT-GTGAAG
1 ACACTTAGTGTGTGACACATCTAG-GAAG
* *
36466098 GCACTGAGTGTG
1 ACACTTAGTGTG
36466110 CGAAACTTCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGTGTGACACATCTAGGAAG
Found at i:36469283 original size:2 final size:2
Alignment explanation
Indices: 36469276--36469321 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
36469266 GTTGTTGACT
*
36469276 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36469318 TA TA
1 TA TA
36469322 CAAGCTGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:36469445 original size:29 final size:29
Alignment explanation
Indices: 36469403--36469481 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
36469393 TATATATGTG
* *
36469403 AATTATTGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGAGAAGTAA
36469432 AATTATCGAGCACTAAGTGTGAGAAGTAA
1 AATTATCGAGCACTAAGTGTGAGAAGTAA
*
36469461 AACTATCGAGCACTAAGTGTG
1 AATTATCGAGCACTAAGTGTG
36469482 TAATCTCATT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGAGAAGTAA
Found at i:36470709 original size:9 final size:9
Alignment explanation
Indices: 36470695--36470723 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
36470685 CATACAAGAT
36470695 AAAAAATAA
1 AAAAAATAA
36470704 AAAAAAT-A
1 AAAAAATAA
36470712 AAAAAATAA
1 AAAAAATAA
36470721 AAA
1 AAA
36470724 TTGACTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAATAA
Found at i:36479806 original size:27 final size:27
Alignment explanation
Indices: 36479744--36479845 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 27
36479734 AGCATGGCTG
* * *
36479744 CCAGAACAAATAA-CGTGACAGAGTCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
36479770 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
*
36479798 GCAGAACAGATATAT-GTGGCAGAGCCA
1 CCAGAACAGATA-ATCGTGGCAGAGCCA
* * *
36479825 CCAGATCAGATATTTGTGGCA
1 CCAGAACAGATAATCGTGGCA
36479846 TATCCACTAG
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.09
27 42 0.65
28 17 0.26
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGGCAGAGCCA
Found at i:36487766 original size:27 final size:26
Alignment explanation
Indices: 36487729--36487821 Score: 105
Period size: 27 Copynumber: 3.5 Consensus size: 26
36487719 AGCATGGCTG
* *
36487729 CCAGAACAGATAACGTGACAGAGTCA
1 CCAGAACAGATAACGTGGCAGAGCCA
*
36487755 CCAGATACAGATAATCGAGGCAGAGCCA
1 CCAGA-ACAGATAA-CGTGGCAGAGCCA
*
36487783 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ACGTGGCAGAGCCA
* *
36487810 CTAGATCAGATA
1 CCAGAACAGATA
36487822 TTTGTGGCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.09
27 36 0.63
28 16 0.28
ACGTcount: A:0.40, C:0.23, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAACGTGGCAGAGCCA
Found at i:36487822 original size:27 final size:27
Alignment explanation
Indices: 36487729--36487840 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
36487719 AGCATGGCTG
* * * *
36487729 CCAGAACAGATA-ACGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
36487755 CCAGATACAGATA-ATCGAGGCAGAGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
36487783 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* * * *
36487810 CTAGATCAGATATTTGTGGCATATCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
36487837 CCAG
1 CCAG
36487841 GATGTTTCCT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
26 5 0.07
27 49 0.70
28 16 0.23
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:36491341 original size:7 final size:7
Alignment explanation
Indices: 36491329--36491364 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
36491319 ACCCCTTCAT
36491329 TCCCTCA
1 TCCCTCA
36491336 TCCCTCA
1 TCCCTCA
*
36491343 TCCGTCA
1 TCCCTCA
*
36491350 TCACTCA
1 TCCCTCA
36491357 TCCCTCA
1 TCCCTCA
36491364 T
1 T
36491365 AATTCTCTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.17, C:0.50, G:0.03, T:0.31
Consensus pattern (7 bp):
TCCCTCA
Found at i:36494930 original size:16 final size:15
Alignment explanation
Indices: 36494911--36494953 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
36494901 CTAAATATAA
36494911 GTTGTTCAAAACAATG
1 GTTGTTCAAAAC-ATG
*
36494927 GTTGTTCTAAACATG
1 GTTGTTCAAAACATG
36494942 GTTGTTCCAAAA
1 GTTGTT-CAAAA
36494954 ATTCCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (15 bp):
GTTGTTCAAAACATG
Found at i:36494944 original size:15 final size:15
Alignment explanation
Indices: 36494897--36494948 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
36494887 CACACACAAA
* *
36494897 TGTTCTAAATATAAGT
1 TGTTCTAAACAT-GGT
*
36494913 TGTTCAAAACAATGGT
1 TGTTCTAAAC-ATGGT
36494929 TGTTCTAAACATGGT
1 TGTTCTAAACATGGT
36494944 TGTTC
1 TGTTC
36494949 CAAAAATTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 10 0.32
16 19 0.61
17 2 0.06
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (15 bp):
TGTTCTAAACATGGT
Found at i:36497209 original size:13 final size:13
Alignment explanation
Indices: 36497191--36497215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36497181 CCAAGCACAC
36497191 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
36497204 GCCCGTGTCCTT
1 GCCCGTGTCCTT
36497216 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:36503670 original size:24 final size:24
Alignment explanation
Indices: 36503632--36503685 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
36503622 AAGCTCTATT
36503632 GAGCT-AAAACGGTAAGCTCTGAC
1 GAGCTAAAAACGGTAAGCTCTGAC
* *
36503655 GAGCTAAAAACTGTAAGCTCTTAC
1 GAGCTAAAAACGGTAAGCTCTGAC
36503679 GAGCTAA
1 GAGCTAA
36503686 TATATCAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (24 bp):
GAGCTAAAAACGGTAAGCTCTGAC
Found at i:36508291 original size:40 final size:40
Alignment explanation
Indices: 36508163--36508275 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
36508153 TGCTGGAAAT
* * * *
36508163 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
* * *
36508203 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
*
36508243 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36508276 ACGTGATTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
Found at i:36512100 original size:77 final size:79
Alignment explanation
Indices: 36511966--36512145 Score: 233
Period size: 77 Copynumber: 2.3 Consensus size: 79
36511956 TCGAATGATG
*
36511966 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGC-ATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
36512031 GTGCGAGTTACTA-A
65 GTGCGAGTTACTATA
* * * **
36512045 TTCCGGGCTAAG-CCCGAAGGCATGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
36512107 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
36512123 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
36512146 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 51 0.57
78 17 0.19
79 9 0.10
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:36512155 original size:40 final size:39
Alignment explanation
Indices: 36511967--36512148 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
36511957 CGAATGATGT
* *
36511967 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
36512006 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
36512047 CCGGGCTAAG-CCCGAAGGCA--TGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36512083 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36512124 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36512149 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
37 23 0.19
38 10 0.08
39 9 0.07
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36520231 original size:78 final size:80
Alignment explanation
Indices: 36520096--36520276 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 80
36520086 TCGAATGATG
* *
36520096 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
36520161 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
36520175 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
36520237 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
36520254 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
36520277 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 26 0.29
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:36520286 original size:40 final size:39
Alignment explanation
Indices: 36520097--36520279 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
36520087 CGAATGATGT
* *
36520097 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
36520136 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
36520177 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36520214 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36520255 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36520280 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36524891 original size:38 final size:36
Alignment explanation
Indices: 36524847--36524979 Score: 122
Period size: 38 Copynumber: 3.5 Consensus size: 36
36524837 TATGGGCTAA
*
36524847 CCGAAGGCAATTGTGCAATTGTGATCCCGGGCTAAGTC
1 CCGAAGGCAATTGTGCAATTGT-AT-CCGGGTTAAGTC
* * * *
36524885 CCGAAGGCATTTATGCGAAGTTATATCCGGGTTAAGAC
1 CCGAAGGCAATTGTGC-AA-TTGTATCCGGGTTAAGTC
* *
36524923 CCGAAGGCAATTGTGCTATGGCTACATCCGGGTTAAGATC
1 CCGAAGGCAATTGTGCAATTG-T--ATCCGGGTTAAG-TC
*
36524963 CCGAAGGCATTTGTGCA
1 CCGAAGGCAATTGTGCA
36524980 GTCGGTTACT
Statistics
Matches: 76, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
36 1 0.01
37 2 0.03
38 38 0.50
39 16 0.21
40 19 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (36 bp):
CCGAAGGCAATTGTGCAATTGTATCCGGGTTAAGTC
Found at i:36524977 original size:40 final size:38
Alignment explanation
Indices: 36524873--36525015 Score: 146
Period size: 40 Copynumber: 3.7 Consensus size: 38
36524863 AATTGTGATC
* * *
36524873 CCGGGCTAAGTCCCGAAGGCATTTATGCGA-AGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-ATGGTTACAT
* * * *
36524911 CCGGGTTAAGACCCGAAGGCAATTGTGCTATGGCTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-ATGGTTACAT
*
36524950 CCGGGTTAAGATCCCGAAGGCATTTGTGCAGTCGGTTACTAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCA-T-GGTTAC-AT
36524992 CCGGGCT-AGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36525016 ACGAGTCTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
38 25 0.28
39 16 0.18
40 32 0.36
41 7 0.08
42 8 0.09
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCATGGTTACAT
Found at i:36528674 original size:37 final size:39
Alignment explanation
Indices: 36528541--36528686 Score: 237
Period size: 39 Copynumber: 3.8 Consensus size: 39
36528531 TTATGGTAGC
* *
36528541 CGCACAAATGCCTTCGGGACTTAACCC-GATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
36528580 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
36528619 CGCACAATTGCCTTCGGGCTTAGCCCGGATA-CACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
36528657 CGCA-AATTGCCTTCGGGCTTAGCCC-GATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
36528687 TACCCGAACA
Statistics
Matches: 103, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
36 4 0.04
37 21 0.20
38 18 0.17
39 60 0.58
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:36528679 original size:76 final size:77
Alignment explanation
Indices: 36528541--36528686 Score: 235
Period size: 76 Copynumber: 1.9 Consensus size: 77
36528531 TTATGGTAGC
36528541 CGCACAAATGCCTTCGGGACTTAACCCGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAATGCCTTCGGGACTTAACCCGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
36528606 GGATATCACAACT
66 -GATATCACAACT
* *
36528619 CGCACAATTGCCTTCGGG-CTTAGCCCGGATA-CACAACTCGCA-AATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCC-GATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
36528681 CGATAT
65 CGATAT
36528687 TACCCGAACA
Statistics
Matches: 65, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
75 5 0.08
76 21 0.32
77 18 0.28
78 21 0.32
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (77 bp):
CGCACAAATGCCTTCGGGACTTAACCCGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GATATCACAACT
Found at i:36531459 original size:38 final size:39
Alignment explanation
Indices: 36531346--36531488 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
36531336 CCGCACAAAG
*
36531346 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
36531386 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36531425 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36531463 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
36531489 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:36531467 original size:77 final size:79
Alignment explanation
Indices: 36531306--36531487 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
36531296 TCGTTCAAAC
* * **
36531306 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
36531371 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
36531386 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
36531449 CAATTTGCACAATT
66 CAATTTGCACAATT
36531463 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
36531488 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:36536243 original size:31 final size:33
Alignment explanation
Indices: 36536208--36536294 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 33
36536198 GTGATTAAAT
*
36536208 ATAAGACCATAACT-GG-TATGGAAATCTGATC
1 ATAAGACCATAACTAGGCTATGGAAATCTAATC
* * *
36536239 ATAAGACCATAGCTGGGCTATGGAAATCTAATG
1 ATAAGACCATAACTAGGCTATGGAAATCTAATC
*
36536272 ATAAGACCATAACTAGGTTATGG
1 ATAAGACCATAACTAGGCTATGG
36536295 CACTACGAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
31 13 0.27
32 2 0.04
33 33 0.69
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (33 bp):
ATAAGACCATAACTAGGCTATGGAAATCTAATC
Found at i:36538804 original size:38 final size:39
Alignment explanation
Indices: 36538691--36538833 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
36538681 CCGCACAAAG
*
36538691 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
36538731 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36538770 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36538808 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
36538834 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:36538812 original size:77 final size:79
Alignment explanation
Indices: 36538651--36538832 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
36538641 TCGTTCAAAC
* * **
36538651 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
36538716 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
36538731 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
36538794 CAATTTGCACAATT
66 CAATTTGCACAATT
36538808 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
36538833 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:36546825 original size:38 final size:39
Alignment explanation
Indices: 36546712--36546854 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
36546702 CCGCACAAAG
*
36546712 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
36546752 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36546791 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
36546829 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
36546855 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:36546833 original size:77 final size:79
Alignment explanation
Indices: 36546672--36546853 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
36546662 TCGTTCAAAC
* * **
36546672 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
36546737 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
36546752 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
36546815 CAATTTGCACAATT
66 CAATTTGCACAATT
36546829 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
36546854 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:36548723 original size:42 final size:42
Alignment explanation
Indices: 36548629--36548724 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
36548619 ACTGCCTAAG
*
36548629 ACACGGGCGTATCTCTTGGCCATGTAAGCCACACTGCCGGCC
1 ACACGGGCGTGTCTCTTGGCCATGTAAGCCACACTGCCGGCC
* ** * * *
36548671 ATACAAGCGTGTCTCTTGGCCGTGTGAGCCACACTGCTGGCC
1 ACACGGGCGTGTCTCTTGGCCATGTAAGCCACACTGCCGGCC
36548713 ACACGGGCGTGT
1 ACACGGGCGTGT
36548725 TTTCCCTGCT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (42 bp):
ACACGGGCGTGTCTCTTGGCCATGTAAGCCACACTGCCGGCC
Found at i:36550544 original size:42 final size:44
Alignment explanation
Indices: 36550436--36550592 Score: 128
Period size: 42 Copynumber: 3.6 Consensus size: 44
36550426 AGCTTGTACA
* * * *
36550436 ATGCCAACATCCCAAACATGGTCTTACATGTAATTGA-ATA-TCA
1 ATGCCAACATCCCAAACATGGTCTTACACGTAAATCATA-AGTCG
* * * *
36550479 ATGCC-TCTGTCCTAAACAGGGTCTTACACG-AAATCA-AA-TACG
1 ATGCCAAC-ATCCCAAACATGGTCTTACACGTAAATCATAAGT-CG
** *
36550521 ATGCCAACATCCCAAATGTGGTCTTACACGTCAATCATAAGTCG
1 ATGCCAACATCCCAAACATGGTCTTACACGTAAATCATAAGTCG
* *
36550565 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACATCCCAAACATGGTCTTACA
36550593 TGATAACACA
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 29 0.33
44 28 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (44 bp):
ATGCCAACATCCCAAACATGGTCTTACACGTAAATCATAAGTCG
Found at i:36550578 original size:44 final size:42
Alignment explanation
Indices: 36550436--36550592 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 42
36550426 AGCTTGTACA
* * ** *
36550436 ATGCCAACATCCCAAACATGGTCTTACATGTAATTGAATATCA
1 ATGCCAACATCCCAAACATGGTCTTACACGAAATCAAATA-CG
* * * *
36550479 ATGCC-TCTGTCCTAAACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAAACATGGTCTTACACGAAATCAAATACG
** *
36550521 ATGCCAACATCCCAAATGTGGTCTTACACGTCAATCATAAGT-CG
1 ATGCCAACATCCCAAACATGGTCTTACACG-AAATCA-AA-TACG
* *
36550565 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACATCCCAAACATGGTCTTACA
36550593 TGATAACACA
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.27
43 36 0.40
44 28 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAACATCCCAAACATGGTCTTACACGAAATCAAATACG
Found at i:36558675 original size:24 final size:28
Alignment explanation
Indices: 36558627--36558677 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
36558617 GTGTTAAAGG
36558627 AAGAGAAAAGAAGACAAAGCAAACGTAA
1 AAGAGAAAAGAAGACAAAGCAAACGTAA
36558655 AAGAGAAAA-AA-A-AAA-CAAACGTA
1 AAGAGAAAAGAAGACAAAGCAAACGTA
36558678 TTTGGTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 8 0.35
25 3 0.13
26 1 0.04
27 2 0.09
28 9 0.39
ACGTcount: A:0.69, C:0.10, G:0.18, T:0.04
Consensus pattern (28 bp):
AAGAGAAAAGAAGACAAAGCAAACGTAA
Found at i:36559642 original size:16 final size:15
Alignment explanation
Indices: 36559597--36559654 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 15
36559587 CATAAATATT
36559597 AAATTAAAATAATATG
1 AAATTAAAATAATA-G
** *
36559613 ATTTTAAAAAAATAG
1 AAATTAAAATAATAG
36559628 AAATTAATAATAATA-
1 AAATTAA-AATAATAG
*
36559643 AACTTAAAATAA
1 AAATTAAAATAA
36559655 ATTTTATAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
14 5 0.15
15 12 0.35
16 17 0.50
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (15 bp):
AAATTAAAATAATAG
Found at i:36562151 original size:56 final size:56
Alignment explanation
Indices: 36562037--36562151 Score: 133
Period size: 56 Copynumber: 2.1 Consensus size: 56
36562027 CTAAATTTAA
* * * * * *
36562037 AAATAAGAATTTTAATTTTAATAAAATATTTTATTAAATAAATTTATCATACTTAT
1 AAATAAGAATTTTAATTTCAATAAAAAAATTTATTAAATAAAGTTATCATAATAAT
* * *
36562093 AAATAAGAATTTTGATTTCACTAAAAAAATTTATTAAATGAAGTTAT-ATAATAAAT
1 AAATAAGAATTTTAATTTCAATAAAAAAATTTATTAAATAAAGTTATCATAAT-AAT
36562149 AAA
1 AAA
36562152 AAAAGATAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 4 0.08
56 45 0.92
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (56 bp):
AAATAAGAATTTTAATTTCAATAAAAAAATTTATTAAATAAAGTTATCATAATAAT
Found at i:36565100 original size:35 final size:35
Alignment explanation
Indices: 36564988--36565100 Score: 97
Period size: 35 Copynumber: 3.2 Consensus size: 35
36564978 GTGTTTAGAA
36564988 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
1 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
* * ** * * *
36565023 TGGTTATTGTTTGGAATGACCATGGACAGTTT-TG-G-TA
1 TGGTTAATATGAGGTATTA-CAT--AC--TTTATGAGCTC
36565060 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
1 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
36565095 TGGTTA
1 TGGTTA
36565101 TTGTTTGGAA
Statistics
Matches: 56, Mismatches: 14, Indels: 16
0.65 0.16 0.19
Matches are distributed among these distances:
32 3 0.05
33 2 0.04
34 3 0.05
35 20 0.36
36 6 0.11
37 14 0.25
38 3 0.05
39 2 0.04
40 3 0.05
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.41
Consensus pattern (35 bp):
TGGTTAATATGAGGTATTACATACTTTATGAGCTC
Found at i:36565104 original size:72 final size:72
Alignment explanation
Indices: 36564987--36565133 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
36564977 TGTGTTTAGA
36564987 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCATGGACAG
1 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCATGGACAG
36565052 TTTTGGT
66 TTTTGGT
*
36565059 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
1 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCATGGACAG
36565124 TTTTGGT
66 TTTTGGT
36565131 ATG
1 ATG
36565134 ATTTGTTAGT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (72 bp):
ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCATGGACAG
TTTTGGT
Found at i:36565868 original size:12 final size:12
Alignment explanation
Indices: 36565851--36565883 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
36565841 TTGAAATTTG
36565851 AAAAGATTTTAT
1 AAAAGATTTTAT
36565863 AAAAGATTTTAT
1 AAAAGATTTTAT
*
36565875 AAAATATTT
1 AAAAGATTT
36565884 AAAATATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (12 bp):
AAAAGATTTTAT
Found at i:36574906 original size:16 final size:16
Alignment explanation
Indices: 36574867--36574923 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
36574857 TGTTCCACAA
36574867 AAAAAAAAAAAAGAA-
1 AAAAAAAAAAAAGAAG
36574882 AATTGAAAAAAAAAAGAAG
1 AA---AAAAAAAAAAGAAG
* *
36574901 AAAAAATAAAAGGAAG
1 AAAAAAAAAAAAGAAG
36574917 AAAAAAA
1 AAAAAAA
36574924 GTTAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 2 0.06
16 18 0.51
18 13 0.37
19 2 0.06
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAAAAGAAG
Found at i:36574911 original size:19 final size:19
Alignment explanation
Indices: 36574871--36574934 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
36574861 CCACAAAAAA
** *
36574871 AAAAAAAAG-AAAATTGAA
1 AAAAAAAAGAAAAAAAGAT
36574889 AAAAAAAAGAAGAAAAA-AT
1 AAAAAAAAGAA-AAAAAGAT
** *
36574908 AAAAGGAAGAAAAAAAGTT
1 AAAAAAAAGAAAAAAAGAT
36574927 AAAAAAAA
1 AAAAAAAA
36574935 AAGTTTGATG
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
18 14 0.40
19 18 0.51
20 3 0.09
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (19 bp):
AAAAAAAAGAAAAAAAGAT
Found at i:36574911 original size:21 final size:21
Alignment explanation
Indices: 36574866--36574905 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36574856 ATGTTCCACA
*
36574866 AAAAAAAAAAAAAGAAAATTG
1 AAAAAAAAAAAAAGAAAAATG
*
36574887 AAAAAAAAAAGAAGAAAAA
1 AAAAAAAAAAAAAGAAAAA
36574906 ATAAAAGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (21 bp):
AAAAAAAAAAAAAGAAAAATG
Found at i:36577696 original size:28 final size:29
Alignment explanation
Indices: 36577660--36577724 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
36577650 AAAGTGATTT
* *
36577660 TTGACAAAAACGTCAATT-AGGGATTAAA
1 TTGAGAAAAACGTAAATTGAGGGATTAAA
** *
36577688 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAACGTAAATTGAGGGATTAAA
*
36577717 TTGTGAAA
1 TTGAGAAA
36577725 TAAATAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.28
Consensus pattern (29 bp):
TTGAGAAAAACGTAAATTGAGGGATTAAA
Found at i:36578243 original size:43 final size:44
Alignment explanation
Indices: 36578195--36578320 Score: 168
Period size: 43 Copynumber: 2.9 Consensus size: 44
36578185 GGTTATCGAG
*
36578195 TTGTGATTACATGTAAGACTATGTCTGAGACATTGGCATCA-TA
1 TTGTGATTACATGTAAGACTATGTCTGGGACATTGGCATCATTA
* *
36578238 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTA
1 TTGTGATTACATGTAAGACTATGTCTGGGACATTGGCATCATTA
* * *
36578282 AT-TGATTTCATGTAAGACCT-TGTCTGGGACAATGGCATC
1 TTGTGATTACATGTAAGA-CTATGTCTGGGACATTGGCATC
36578321 GACATATGAT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 69 0.95
44 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (44 bp):
TTGTGATTACATGTAAGACTATGTCTGGGACATTGGCATCATTA
Found at i:36580439 original size:29 final size:30
Alignment explanation
Indices: 36580384--36580447 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 30
36580374 ATAAAAATAA
*
36580384 AAATTACATTTTGACCCCTAAACTTTTCCT
1 AAATTACATTTTGAACCCTAAACTTTTCCT
36580414 AAATTACATTTT-AACCCTAAACTTTTCCT
1 AAATTACATTTTGAACCCTAAACTTTTCCT
36580443 AAATT
1 AAATT
36580448 TCACCCCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (30 bp):
AAATTACATTTTGAACCCTAAACTTTTCCT
Found at i:36580496 original size:30 final size:30
Alignment explanation
Indices: 36580445--36580517 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 30
36580435 CTTTTCCTAA
* * *
36580445 ATTTCACCCCT-AAACTTTCTTTAAATTTC
1 ATTTCAACCCTAAAAATTTCTTTAAATTGC
36580474 ATTTCAACCCTAAAAATTTCTTTAAATTGC
1 ATTTCAACCCTAAAAATTTCTTTAAATTGC
**
36580504 ATTTTGACCCTAAA
1 ATTTCAACCCTAAA
36580518 TTTTCTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
29 10 0.26
30 28 0.74
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (30 bp):
ATTTCAACCCTAAAAATTTCTTTAAATTGC
Found at i:36582034 original size:17 final size:17
Alignment explanation
Indices: 36582009--36582177 Score: 71
Period size: 18 Copynumber: 9.7 Consensus size: 17
36581999 ATAACAAAAA
*
36582009 TTCGGGTTTCAAAAATT
1 TTCGTGTTTCAAAAATT
36582026 TTCGTGTTTTCAAAAATT
1 TTCGTG-TTTCAAAAATT
****
36582044 TTCGT-TTTTTTTAATT
1 TTCGTGTTTCAAAAATT
*
36582060 TCTCAG-GTTTCAAAGATT
1 T-TC-GTGTTTCAAAAATT
*
36582078 CTCAG-GTTTTCAAAAATT
1 TTC-GTG-TTTCAAAAATT
*
36582096 TTTGTGTTTTC-AAAATCT
1 TTCGTG-TTTCAAAAAT-T
* * **
36582114 CTCGGGTTTCAAAAAAAAA
1 TTCGTGTTTC--AAAAATT
* **
36582133 ATCAAGTTTC-AAAATT
1 TTCGTGTTTCAAAAATT
36582149 TTCGTGTTTTC-AAAATT
1 TTCGTG-TTTCAAAAATT
36582166 TTCGTGTTTCAA
1 TTCGTGTTTCAA
36582178 TCGAATCATG
Statistics
Matches: 113, Mismatches: 27, Indels: 24
0.69 0.16 0.15
Matches are distributed among these distances:
16 19 0.17
17 39 0.35
18 44 0.39
19 7 0.06
20 4 0.04
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (17 bp):
TTCGTGTTTCAAAAATT
Found at i:36582038 original size:18 final size:18
Alignment explanation
Indices: 36582015--36582174 Score: 79
Period size: 17 Copynumber: 9.1 Consensus size: 18
36582005 AAAATTCGGG
36582015 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
36582033 TTTCAAAAATTTTCGT-T
1 TTTCAAAAATTTTCGTGT
***
36582050 TTT-TTTAATTTCTCAG-G-
1 TTTCAAAAATTT-TC-GTGT
* *
36582067 TTTCAAAGATTCTCAG-GT
1 TTTCAAAAATTTTC-GTGT
*
36582085 TTTCAAAAATTTTTGTGT
1 TTTCAAAAATTTTCGTGT
* *
36582103 TTTC-AAAATCTCTCG-GG
1 TTTCAAAAAT-TTTCGTGT
*** **
36582120 TTTCAAAAAAAAAATCAAG-
1 TTTC--AAAAATTTTCGTGT
36582139 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
36582156 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
36582173 TT
1 TT
36582175 CAATCGAATC
Statistics
Matches: 107, Mismatches: 23, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
16 12 0.11
17 44 0.41
18 40 0.37
19 6 0.06
20 5 0.05
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.47
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:36584850 original size:47 final size:47
Alignment explanation
Indices: 36584797--36585011 Score: 317
Period size: 47 Copynumber: 4.6 Consensus size: 47
36584787 TCGGCTTCGC
* * *
36584797 CACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
36584844 CTCATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
36584891 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
36584938 CTCA-ATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
36584984 CACATATATGCAGGTTCACATTCATCAC
1 CACATATATGCATGTTCACATTCATCAC
36585012 CTTAAATCCT
Statistics
Matches: 152, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
46 44 0.29
47 108 0.71
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:36584979 original size:93 final size:94
Alignment explanation
Indices: 36584812--36585011 Score: 330
Period size: 93 Copynumber: 2.1 Consensus size: 94
36584802 ATATACACTT
* *
36584812 TCACGTTCATCACATTGGCCATTCTGCCTTATCTCATATATGCATATTCACATTCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATATTCACATTCATCACATTGG
*
36584877 CCATTCGGCCTTATCACACATATGCATGC
66 CCATTCGGCCTTATCACACATATGCAGGC
* *
36584906 TCACATTCATCACATTGGCCATTCGGCCTTATCTCA-ATATGCATGTTCATATTCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATATTCACATTCATCACATTGG
* *
36584970 CCATTCGGCCTTATCACATATATGCAGGT
66 CCATTCGGCCTTATCACACATATGCAGGC
36584999 TCACATTCATCAC
1 TCACATTCATCAC
36585012 CTTAAATCCT
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
93 65 0.66
94 34 0.34
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (94 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATATTCACATTCATCACATTGG
CCATTCGGCCTTATCACACATATGCAGGC
Found at i:36589425 original size:79 final size:77
Alignment explanation
Indices: 36589149--36589465 Score: 309
Period size: 79 Copynumber: 4.0 Consensus size: 77
36589139 CACATCACCG
* * * * *
36589149 GCACGAATGCCTTTCGGGACTTAGCCCGG-ATATAACATCGGCACGAATACCCTTCGGGATTTAG
1 GCACAAATGCC-TTCGGGACTTAGCCCGGTATATAAC-T-AGCACAAAT-GCCTTCGGGACTTAG
* *
36589213 -CCGGATATAGCTACTCA
62 CCCGGTTATATC-ACT-A
* * * *
36589230 -CTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGGACTTAACC
1 GCACAAATGCCTTCGGGACTTAGCCCGG-TAT-ATAACTAGCACAAATGCCTTCGGGACTTAGCC
* *
36589294 CGGTTATAGTAACTC
64 CGGTTATA-TCACTA
* *
36589309 GCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGTA-TA-TAACTAGCACAAATGCCTTCGGGACTTAGCC
36589373 CGGTTATATCACTA
64 CGGTTATATCACTA
* * *
36589387 GCACGAATGCTCTTCGGGACTTAGCCCAGGTATATCACTAGCACGAATGCTCTTCGGGACTTAGC
1 GCACAAATGC-CTTCGGGACTTAGCCC-GGTATATAACTAGCACAAATGC-CTTCGGGACTTAGC
*
36589452 CCGGGTATATCACT
63 CCGGTTATATCACT
36589466 CTCAATTCTC
Statistics
Matches: 200, Mismatches: 24, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
78 15 0.08
79 96 0.48
80 78 0.39
81 6 0.03
82 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGTATATAACTAGCACAAATGCCTTCGGGACTTAGCCCG
GTTATATCACTA
Found at i:36589461 original size:40 final size:39
Alignment explanation
Indices: 36589149--36589465 Score: 293
Period size: 40 Copynumber: 8.0 Consensus size: 39
36589139 CACATCACCG
* * * *
36589149 GCACGAATGCCTTTCGGGACTTAGCCCGGATATAACA-TCG
1 GCACAAATGCC-TTCGGGACTTAGCCCGGGTATATCACT-A
* * * * *
36589189 GCACGAATACCCTTCGGGATTTAG-CCGGATATAGCTACTCA
1 GCACAAAT-GCCTTCGGGACTTAGCCCGGGTATATC-ACT-A
* * * *
36589230 -CTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTAT-ATCACTA
* * * * *
36589269 GCACAAATGCCTTCAGGACTTAACCCGGTTATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTATA-TCACTA
*
36589309 GCACAAATGCCTTCGGG-CTTAGCCC-GGAATTAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTA-TA-TCACTA
*
36589348 GCACAAATGCCTTCGGGACTTAGCCCGGTTATATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGGTATATCACTA
* *
36589387 GCACGAATGCTCTTCGGGACTTAGCCCAGGTATATCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGGTATATCACTA
*
36589427 GCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 GCACAAATGC-CTTCGGGACTTAGCCCGGGTATATCACT
36589466 CTCAATTCTC
Statistics
Matches: 239, Mismatches: 27, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 70 0.29
40 160 0.67
41 7 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGGTATATCACTA
Found at i:36589465 original size:119 final size:117
Alignment explanation
Indices: 36589149--36589466 Score: 342
Period size: 119 Copynumber: 2.7 Consensus size: 117
36589139 CACATCACCG
* * *
36589149 GCACGAATGCCTTTCGGGACTTAGCCCGG-ATATAACATCGGCACGAATACCCTTCGGGATTTAG
1 GCACGAATGCC-TTCGGGACTTAGCCCGGTATATAAC-T-AGCACGAAT-GCCTTCGGGACTTAG
* * * *
36589213 -CCGGATATAGCTACTCACTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTC
62 CCCGGGTATATC-ACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTA
* * * * *
36589269 GCACAAATGCCTTCAGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCC
1 GCACGAATGCCTTCGGGACTTAGCCCGG-TATA-TAACTAGCACGAATGCCTTCGGGACTTAGCC
* *
36589333 C-GGAATTAGTCACT-AGCACAAATGCCTTCGGGACTTAGCCCGGTTAT-ATCACTA
64 CGGGTA-TA-TCACTCA-CACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTA
*
36589387 GCACGAATGCTCTTCGGGACTTAGCCCAGGTATATCACTAGCACGAATGCTCTTCGGGACTTAGC
1 GCACGAATGC-CTTCGGGACTTAGCCC-GGTATATAACTAGCACGAATGC-CTTCGGGACTTAGC
36589452 CCGGGTATATCACTC
63 CCGGGTATATCACTC
36589467 TCAATTCTCA
Statistics
Matches: 165, Mismatches: 20, Indels: 26
0.78 0.09 0.12
Matches are distributed among these distances:
118 34 0.21
119 90 0.55
120 30 0.18
121 7 0.04
122 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (117 bp):
GCACGAATGCCTTCGGGACTTAGCCCGGTATATAACTAGCACGAATGCCTTCGGGACTTAGCCCG
GGTATATCACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTA
Found at i:36591027 original size:46 final size:48
Alignment explanation
Indices: 36590950--36591039 Score: 121
Period size: 46 Copynumber: 1.9 Consensus size: 48
36590940 ACGTATATAT
* *
36590950 ATATATACACATCTCATACATATCTCACATTAGCCATTTGGCTTTACC
1 ATATATACACATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
* * *
36590998 ATATAT-C-CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 ATATATACACATCTCATACACATCTCACATTAGCCATTCGGCTT
36591040 CGCCACATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 30 0.81
47 1 0.03
48 6 0.16
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.36
Consensus pattern (48 bp):
ATATATACACATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
Found at i:36591081 original size:47 final size:46
Alignment explanation
Indices: 36591023--36591258 Score: 276
Period size: 47 Copynumber: 5.0 Consensus size: 46
36591013 ACACGTTTCG
* ** * *
36591023 CATTAGCCATTCGGCTTCGCCACATATATACACT-TTCACGTTCATCA
1 CATTGGCCATTCGGCTT-ATCACATATATGCA-TGTTCACATTCATCA
* * **
36591070 CATTGGCCATTCTGCCTTATCTCATATATGCACATTCACATTCATCA
1 CATTGGCCATTC-GGCTTATCACATATATGCATGTTCACATTCATCA
* * *
36591117 CATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCATCA
* *
36591164 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCATCA
*
36591211 CATTGGCCATTCGGCCTTATCACATATATGCAGGTTCACATTCATCA
1 CATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCATCA
36591258 C
1 C
36591259 CTTAAATCCT
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.01
47 158 0.97
48 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (46 bp):
CATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCATCA
Found at i:36605403 original size:14 final size:14
Alignment explanation
Indices: 36605373--36605402 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
36605363 TCGAGCTAAC
36605373 AAATAAATAAAATA
1 AAATAAATAAAATA
36605387 AAATAAA-AAAATA
1 AAATAAATAAAATA
36605400 AAA
1 AAA
36605403 AAAACATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAATAAATAAAATA
Found at i:36613449 original size:91 final size:87
Alignment explanation
Indices: 36613300--36613791 Score: 418
Period size: 78 Copynumber: 5.9 Consensus size: 87
36613290 TCTGTTTTTC
* * * *
36613300 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGCCACATGCCGAGGTATTTTCAATT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATTTTCAATT
* *
36613365 TTTGTTTTTTAATTTCTACTTTTCAA
66 TTTGTTTTTCAA-TT-TA--TGTCAA
* * * *
36613391 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTTTC-ATT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATTTTCAATT
* *
36613455 TTCT-ATTTTCAATTTATGTGAA
66 TT-TGTTTTTCAATTTATGTCAA
* *
36613477 AAAAGATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACACTGAGGTATTTTCAAT
1 AAAA-ATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATTTTCAAT
*
36613542 TTCTG--------TTT-T-TCAA
65 TTTTGTTTTTCAATTTATGTCAA
* * * *
36613555 AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGGGTCACACG-TCGAGGTATTTTTCAA
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCT-GAGGTA-TTTTCAA
*
36613619 TTTCTG----TC----T-T-TCAA
64 TTTTTGTTTTTCAATTTATGTCAA
*
36613633 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGC-TCGGGTCACACGCTGAGGTATTTTCAAT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGA-GCATCGGGTCACACGCTGAGGTATTTTCAAT
36613697 TTCTT-TTTTTCAA---A----AA
65 TT-TTGTTTTTCAATTTATGTCAA
* * * * *
36613713 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGCTGAGGTATTTTCAATT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATTTTCAATT
36613778 TTCTGCTTTTTCAA
66 TT-TG-TTTTTCAA
36613792 ATATCAACTC
Statistics
Matches: 349, Mismatches: 30, Indels: 53
0.81 0.07 0.12
Matches are distributed among these distances:
76 1 0.00
77 56 0.16
78 76 0.22
79 7 0.02
80 66 0.19
81 2 0.01
82 8 0.02
86 8 0.02
87 52 0.15
88 6 0.02
89 2 0.01
90 11 0.03
91 54 0.15
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (87 bp):
AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATTTTCAATT
TTTGTTTTTCAATTTATGTCAA
Found at i:36613634 original size:78 final size:77
Alignment explanation
Indices: 36613370--36613867 Score: 527
Period size: 77 Copynumber: 6.3 Consensus size: 77
36613360 CAATTTTTGT
* ** * * *
36613370 TTTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
36613435 CACGCTGAGATA
66 CACGCTGAGGTA
** * *
36613447 TTTTCATTTTCTATTTTCAATTTATGTGAAAAAAGATTAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCA------A-TTTCTGTTT-T-TCAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAG
*
36613512 CCTCGGGTCACACACTGAGGTA
56 CCTCGGGTCACACGCTGAGGTA
* *
36613534 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
36613599 CACG-TCGAGGTA
66 CACGCT-GAGGTA
* *
36613611 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTCGGGTC
1 -TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
36613676 ACACGCTGAGGTA
65 ACACGCTGAGGTA
* * *
36613689 TTTTCAATTTCTTTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
1 TTTTCAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
36613754 TCACATGCTGAGGTA
63 TCACACGCTGAGGTA
* * * * * *
36613769 TTTTCAATTTTCTGCTTTTTC--AAATATCAACTCATAATCCAAGAGGTGAGTTGAACTTCGGGT
1 TTTTCAA-TTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* * *
36613832 CGCATC-CCGAGCTA
64 CACA-CGCTGAGGTA
*
36613846 TTTTCAATTTTGTGTTTTTCAA
1 TTTTCAA-TTTCTGTTTTTCAA
36613868 TAAAGAATAA
Statistics
Matches: 359, Mismatches: 41, Indels: 41
0.81 0.09 0.09
Matches are distributed among these distances:
76 7 0.02
77 124 0.35
78 78 0.22
79 2 0.01
80 68 0.19
81 6 0.02
82 6 0.02
83 1 0.00
84 7 0.02
85 1 0.00
86 7 0.02
87 52 0.14
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
CACGCTGAGGTA
Found at i:36613818 original size:235 final size:236
Alignment explanation
Indices: 36613385--36613822 Score: 616
Period size: 235 Copynumber: 1.8 Consensus size: 236
36613375 AATTTCTACT
36613385 TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTT
1 TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTT
* * *
36613450 TCATTTTCTATTTTCAATTTATGTGAAAAAAGATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 TCAATTTCTATTTTCAA--TA---GAAAAAAGATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
* ** * *
36613515 CGGGTCACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGG
126 CAGGTCACACACTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATAATCCAAGAGG
36613580 TGAGTTGAGCCTTGGGTCACACGTCGAGGTATTTTTCAATTTCTGTC
190 TGAGTTGAGCCTTGGGTCACACGTCGAGGTATTTTTCAATTTCTGTC
* * *
36613627 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGC-TCGGGTCACACGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGA-GCATCAGGTCACACGCTGAGATATT
*
36613691 TTCAATTTCTTTTTTTCAA-A-AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
65 TTCAATTTC-TATTTTCAATAGAAAAAAGATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG
** *
36613753 GTCACATGCTGAGGTATTTTCAATTTTCTGCTTTTTC-AAATATCAACTCATAATCCAAGAGGTG
129 GTCACACACTGAGGTATTTTCAA-TTTCTG-TTTTTCAAAAAATCAACTCATAATCCAAGAGGTG
36613817 AGTTGA
192 AGTTGA
36613823 ACTTCGGGTC
Statistics
Matches: 177, Mismatches: 15, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
235 82 0.46
236 12 0.07
237 6 0.03
240 1 0.01
242 66 0.37
243 10 0.06
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (236 bp):
TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTT
TCAATTTCTATTTTCAATAGAAAAAAGATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
CACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATAATCCAAGAGGTGAGTT
GAGCCTTGGGTCACACGTCGAGGTATTTTTCAATTTCTGTC
Found at i:36614086 original size:30 final size:29
Alignment explanation
Indices: 36614050--36614136 Score: 113
Period size: 30 Copynumber: 3.0 Consensus size: 29
36614040 GAAAAATAAA
36614050 AAATTATATTTTGACCCATAAACTTTTCTT
1 AAATTATATTTTGACCC-TAAACTTTTCTT
*
36614080 AAATTATATTTTGACCCCTAAACTTTTATT
1 AAATTATATTTTGA-CCCTAAACTTTTCTT
** *
36614110 AAATTGCATTTTAACCCTAAA-TTTTCT
1 AAATTATATTTTGACCCTAAACTTTTCT
36614137 AAAAATTACA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 5 0.10
29 7 0.14
30 36 0.71
31 3 0.06
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATTATATTTTGACCCTAAACTTTTCTT
Found at i:36615722 original size:52 final size:49
Alignment explanation
Indices: 36615626--36615782 Score: 138
Period size: 53 Copynumber: 3.0 Consensus size: 49
36615616 TTTCTTTATA
* * * * ** *
36615626 AAAAAATTCGGGTTTCAAAAATTTTCGTTTTTTTTTAATTTCTCGGTTTC
1 AAAAATTTCGAGTTTCAAAAATTTTTG-TGTTTTCAAAATTCTCGGTTTC
*
36615676 AAAGATTCTC-AGGTTTTCAAAAATTTTTGTGTTTTCAAAATCTCTCGGGTTTC
1 AAAAATT-TCGA-G-TTTCAAAAATTTTTGTGTTTTCAAAAT-TCTC-GGTTTC
36615729 AAAAAAAATTTCGAGTTTC-AAAATTTTTGTGTTTTCAAAATTCTCGTGTTTC
1 ---AAAAATTTCGAGTTTCAAAAATTTTTGTGTTTTCAAAATTCTCG-GTTTC
36615781 AA
1 AA
36615783 TCAGATCATG
Statistics
Matches: 88, Mismatches: 9, Indels: 21
0.75 0.08 0.18
Matches are distributed among these distances:
49 2 0.02
50 5 0.06
51 12 0.14
52 27 0.31
53 28 0.32
54 4 0.05
55 3 0.03
56 7 0.08
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (49 bp):
AAAAATTTCGAGTTTCAAAAATTTTTGTGTTTTCAAAATTCTCGGTTTC
Found at i:36615762 original size:16 final size:16
Alignment explanation
Indices: 36615733--36615782 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
36615723 GGTTTCAAAA
*
36615733 AAAATT-TCGAGTTTC
1 AAAATTCTCGTGTTTC
* *
36615748 AAAATTTTTGTGTTTTC
1 AAAATTCTCGTG-TTTC
36615765 AAAATTCTCGTGTTTC
1 AAAATTCTCGTGTTTC
36615781 AA
1 AA
36615783 TCAGATCATG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 6 0.21
16 9 0.31
17 14 0.48
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (16 bp):
AAAATTCTCGTGTTTC
Found at i:36616639 original size:19 final size:18
Alignment explanation
Indices: 36616598--36616664 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 18
36616588 ATAAAGTAGG
*
36616598 TTATATATTATTTTTATAATA
1 TTATATATTATATTT-T--TA
36616619 TTATATATTATAATTTTTA
1 TTATATATTAT-ATTTTTA
36616638 TTA-AT-TTATATTTTTA
1 TTATATATTATATTTTTA
*
36616654 TGATAATATTA
1 TTAT-ATATTA
36616665 AAAATGTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 9 0.22
17 4 0.10
18 4 0.10
19 8 0.20
21 12 0.30
22 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (18 bp):
TTATATATTATATTTTTA
Found at i:36616646 original size:24 final size:23
Alignment explanation
Indices: 36616599--36616648 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
36616589 TAAAGTAGGT
*
36616599 TATATATTATTTTTATAATATTA
1 TATATATAATTTTTATAATATTA
36616622 TATATTATAATTTTTATTAAT-TTA
1 TATA-TATAATTTTTA-TAATATTA
36616646 TAT
1 TAT
36616649 TTTTATGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 16 0.67
25 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATATAATTTTTATAATATTA
Found at i:36618342 original size:30 final size:30
Alignment explanation
Indices: 36618306--36618369 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
36618296 TGAATTTTTA
*
36618306 TTTTTATA-CTTTATTATATATTTTT-TGAAT
1 TTTTTATATATTTA-TATATATTTTTAT-AAT
*
36618336 TTTTTATATATTTATATTTATTTTTATAAT
1 TTTTTATATATTTATATATATTTTTATAAT
36618366 TTTT
1 TTTT
36618370 AAAATTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (30 bp):
TTTTTATATATTTATATATATTTTTATAAT
Found at i:36618369 original size:38 final size:35
Alignment explanation
Indices: 36618296--36618369 Score: 87
Period size: 38 Copynumber: 2.0 Consensus size: 35
36618286 ATGGAATTAA
*
36618296 TGAATTTTTATTTTTATACTTTATTATATATTTTT
1 TGAATTTTTATTTTTATACTTTATTATATAATTTT
*
36618331 TGAATTTTTTATATATTTATA-TTTATTTTTATAATTTT
1 TGAA-TTTTTAT-T-TTTATACTTTA-TTATATAATTTT
36618369 T
1 T
36618370 AAAATTGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
35 4 0.12
36 7 0.21
37 5 0.15
38 17 0.52
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (35 bp):
TGAATTTTTATTTTTATACTTTATTATATAATTTT
Found at i:36623625 original size:35 final size:35
Alignment explanation
Indices: 36623576--36623648 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
36623566 TTGAGTGTTA
36623576 AACATTTTAACTTATATTATCTGTTTGTTAATGCT
1 AACATTTTAACTTATATTATCTGTTTGTTAATGCT
* *
36623611 AACATTTTACCTTATATTTTCTGTTTGTTAATGCT
1 AACATTTTAACTTATATTATCTGTTTGTTAATGCT
36623646 AAC
1 AAC
36623649 TATCTTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (35 bp):
AACATTTTAACTTATATTATCTGTTTGTTAATGCT
Found at i:36625548 original size:21 final size:21
Alignment explanation
Indices: 36625523--36625572 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
36625513 AAGTAGATTG
36625523 TATATTATTTTAATAATATTA
1 TATATTATTTTAATAATATTA
36625544 TATATTATTTTAATAATATTA
1 TATATTATTTTAATAATATTA
36625565 TATATTAT
1 TATATTAT
36625573 AATTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATTATTTTAATAATATTA
Found at i:36625597 original size:26 final size:28
Alignment explanation
Indices: 36625531--36625600 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 28
36625521 TGTATATTAT
36625531 TTTA-ATAAT-ATTATATATTATTTTAA
1 TTTATATAATAATTATATATTATTTTAA
* *
36625557 -TAATATTATATATTATA-ATT-TTTTAA
1 TTTATATAATA-ATTATATATTATTTTAA
36625583 TTTATATAATAATTATAT
1 TTTATATAATAATTATAT
36625601 TAAGAATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
25 2 0.06
26 16 0.46
27 11 0.31
28 6 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTATATAATAATTATATATTATTTTAA
Found at i:36625672 original size:57 final size:58
Alignment explanation
Indices: 36625582--36625726 Score: 188
Period size: 57 Copynumber: 2.5 Consensus size: 58
36625572 TAATTTTTTA
* *
36625582 ATTTATATAATAATTATATTAAGAATATTATTAAATTGTATATTATTTTATTAAATTAC
1 ATTTA-ATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTAC
* * *
36625641 ATTTAATAATAATTATGTTAA-AATATGATTAAATTATTTATTATTTTATTAAATTAT
1 ATTTAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTAC
* *
36625698 TTTTAATAATAATCT-TATTAA-AATTTGAT
1 ATTTAATAATAAT-TATATTAAGAATATGAT
36625727 AATAATAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
57 56 0.73
58 16 0.21
59 5 0.06
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (58 bp):
ATTTAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTAC
Found at i:36628618 original size:269 final size:262
Alignment explanation
Indices: 36628119--36628621 Score: 724
Period size: 269 Copynumber: 1.9 Consensus size: 262
36628109 GGCAGCGTAC
36628119 TATGGAGGCCAATGAAAATGCAATGAAACTTGCTCAAGATCTGAAGGTTATTTTGTAATTCATAC
1 TATGGAGGCCAATGAAAATGCAATGAAACTTGCTCAAGATCTGAAGGTTATTTTGTAATTCATAC
*
36628184 CTTTATCTTTAAAAACGACCACATGGTTCCTTGTCATTTTTTGAACTGAGAATTGATGAAATGGC
66 CTTTATCTTTAAAAACGACCACATAGTTCCTTGTCATTTTTTGAACTGAGAATTGATGAAATGGC
* * * *
36628249 TGGACCATTGGTTATACACAGGCAGAATGAGGAGCTCCGCAATATGGTTGTTGAGGTGGAGCGGC
131 TGGACCATTGGTTATACAAAGGCAGAATGAGGAGCTCCGCAATAGGGTTGTTGAGGTAGAGCAGC
* *
36628314 TAAAAGGCAGTGCGGAACAGGAACTATAGACCACCAAGGAACGTCTTTCCATTGCTGAGGAACGC
196 TAAAAGGCAGTGCGGAACAGAAACTAGAGACCACCAAGGAACGTCTTTCCATTGCTGAGGAACGC
36628379 AT
261 AT
* * ** *
36628381 TATGGTGGCCAATGAAAATGCAATGAAACTTGTTGTAGATCTGAAGGTT-TGTTTTTAATTCATA
1 TATGGAGGCCAATGAAAATGCAATGAAACTTGCTCAAGATCTGAAGGTTAT-TTTGTAATTCATA
* * *
36628445 CCTTTATCTTTAATAATGACCACATAGTTCCTTGTCGTTTTTTGAAAGCATTGCTGAGAATTGAT
65 CCTTTATCTTTAAAAACGACCACATAGTTCCTTGTCATTTTTTG--A--A---CTGAGAATTGAT
** *
36628510 GAAATGTTTGGACCTTTGGTTATACAAAGGCAGAATGAGGAGCTCCGCAATAGGGTTGTTGA-GT
123 GAAATGGCTGGACCATTGGTTATACAAAGGCAGAATGAGGAGCTCCGCAATAGGGTTGTTGAGGT
*
36628574 CAGAGCAGCTAAAAGGCAGTGCTGAAC-GAAAGCTAGAGACCACCAAGG
188 -AGAGCAGCTAAAAGGCAGTGCGGAACAGAAA-CTAGAGACCACCAAGG
36628622 GACATCTATC
Statistics
Matches: 212, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
261 1 0.00
262 97 0.46
264 1 0.00
266 1 0.00
268 5 0.02
269 107 0.50
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (262 bp):
TATGGAGGCCAATGAAAATGCAATGAAACTTGCTCAAGATCTGAAGGTTATTTTGTAATTCATAC
CTTTATCTTTAAAAACGACCACATAGTTCCTTGTCATTTTTTGAACTGAGAATTGATGAAATGGC
TGGACCATTGGTTATACAAAGGCAGAATGAGGAGCTCCGCAATAGGGTTGTTGAGGTAGAGCAGC
TAAAAGGCAGTGCGGAACAGAAACTAGAGACCACCAAGGAACGTCTTTCCATTGCTGAGGAACGC
AT
Found at i:36634750 original size:26 final size:26
Alignment explanation
Indices: 36634714--36634796 Score: 157
Period size: 26 Copynumber: 3.2 Consensus size: 26
36634704 AAGAAAAGAG
36634714 AAAGGATTTCATAAACCTTGAACGCT
1 AAAGGATTTCATAAACCTTGAACGCT
36634740 AAAGGATTTCATAAACCTTGAACGCT
1 AAAGGATTTCATAAACCTTGAACGCT
36634766 AAAGGATTTCATAAACCTTGAACGCT
1 AAAGGATTTCATAAACCTTGAACGCT
*
36634792 CAAGG
1 AAAGG
36634797 TTCAAGGAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (26 bp):
AAAGGATTTCATAAACCTTGAACGCT
Found at i:36640527 original size:56 final size:53
Alignment explanation
Indices: 36640434--36640542 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
36640424 GAAAAAAAAA
36640434 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
36640487 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
36640543 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:36641803 original size:40 final size:40
Alignment explanation
Indices: 36641737--36641903 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36641727 AAATTGAATG
* * *
36641737 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36641776 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36641816 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36641856 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36641896 ATATCCGG
1 ATATCCGG
36641904 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36646443 original size:17 final size:17
Alignment explanation
Indices: 36646421--36646454 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36646411 CGACCCATTT
36646421 GAAAAGAAAAATTAAAA
1 GAAAAGAAAAATTAAAA
**
36646438 GAAAAGATTAATTAAAA
1 GAAAAGAAAAATTAAAA
36646455 TTTGAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18
Consensus pattern (17 bp):
GAAAAGAAAAATTAAAA
Found at i:36647224 original size:34 final size:34
Alignment explanation
Indices: 36647186--36647260 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
36647176 ATTATGCATA
* * * *
36647186 TTATGTATGTACGTTATGTATGTTATGTTTACTG
1 TTATGTATGTACATTATGGATGTCATGTTTAATG
* *
36647220 TTATGTTTGTATATTATGGATGTCATGTTTAATG
1 TTATGTATGTACATTATGGATGTCATGTTTAATG
36647254 -TATGTAT
1 TTATGTAT
36647261 ATTATGTGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 6 0.18
34 28 0.82
ACGTcount: A:0.23, C:0.04, G:0.20, T:0.53
Consensus pattern (34 bp):
TTATGTATGTACATTATGGATGTCATGTTTAATG
Found at i:36647258 original size:50 final size:48
Alignment explanation
Indices: 36647150--36647242 Score: 118
Period size: 47 Copynumber: 1.9 Consensus size: 48
36647140 ACTATTTATG
*
36647150 TATGTATGTTATGTTTTTAAACTGTTATTATGCATATTATGTATGTACGT
1 TATGTATGTTATG-TTTT-AACTGTTATTATGCATATTATGGATGTACGT
* *
36647200 TATGTATGTTATG-TTT-ACTGTTATGTTTGTATATTATGGATGT
1 TATGTATGTTATGTTTTAACTGTTAT-TATGCATATTATGGATGT
36647243 CATGTTTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
46 8 0.21
47 15 0.38
48 3 0.08
50 13 0.33
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.54
Consensus pattern (48 bp):
TATGTATGTTATGTTTTAACTGTTATTATGCATATTATGGATGTACGT
Found at i:36648322 original size:25 final size:26
Alignment explanation
Indices: 36648284--36648332 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
36648274 TTTATTGATG
*
36648284 TTTGTATTTTAATGGATGGTTCAAAT
1 TTTGTATTGTAATGGATGGTTCAAAT
36648310 TTTGT-TTGTAATGGATGGTTCAA
1 TTTGTATTGTAATGGATGGTTCAA
36648333 TTTATGGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.49
Consensus pattern (26 bp):
TTTGTATTGTAATGGATGGTTCAAAT
Found at i:36650709 original size:26 final size:26
Alignment explanation
Indices: 36650679--36650774 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
36650669 AAAAATAGTA
36650679 AAATTACCAAAATACCCTTGTAGGGT
1 AAATTACCAAAATACCCTTGTAGGGT
** *
36650705 AAATTACTGAAATACCCTTATAGGGT
1 AAATTACCAAAATACCCTTGTAGGGT
** * *
36650731 AAATTACTGAAATAACCTTGTAGTGT
1 AAATTACCAAAATACCCTTGTAGGGT
*
36650757 AAAATGACCAAAATACCC
1 -AAATTACCAAAATACCC
36650775 CTAAAGGGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
26 46 0.78
27 13 0.22
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCTTGTAGGGT
Found at i:36650744 original size:52 final size:53
Alignment explanation
Indices: 36650679--36650786 Score: 128
Period size: 53 Copynumber: 2.1 Consensus size: 53
36650669 AAAAATAGTA
* * ** * *
36650679 AAATTACCAAAATACCCTTGTAGGGT-AAATTACTGAAATACCCTTATAGGGT
1 AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
** *
36650731 AAATTACTGAAATAACCTTGTAGTGTAAAATGACCAAAATACCCCTAAAGGGT
1 AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
36650784 AAA
1 AAA
36650787 GTGACTGTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
52 22 0.48
53 24 0.52
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.26
Consensus pattern (53 bp):
AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
Found at i:36654037 original size:42 final size:42
Alignment explanation
Indices: 36653938--36654102 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 42
36653928 AGCTCGTACA
* * * * *
36653938 ATGCCAACGTTCCAGACGAGGTCTTACATGTAATAAAATATCG
1 ATGCCAACGTCCCAGACAAGGTCTTACACGAAATCAAATA-CG
*
36653981 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCATATACG
1 ATGCCAAC-GTCCCAGACAAGGTCTTACACGAAATCAAATACG
* * * *
36654023 ATGCCAATGTCCCAGATATGGTTTTACACGCAATTATCAAAT-CG
1 ATGCCAACGTCCCAGACAAGGTCTTACACG-AA--ATCAAATACG
* *
36654067 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAACGTCCCAGACAAGGTCTTACACGAAATCA
36654103 CGTACCGGAA
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.04
42 28 0.27
43 36 0.35
44 28 0.27
45 6 0.06
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAAGGTCTTACACGAAATCAAATACG
Found at i:36659372 original size:20 final size:20
Alignment explanation
Indices: 36659342--36659381 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36659332 TAAAATGTTA
36659342 TTAATATATTTTATATAAAAT
1 TTAATATATTTTAT-TAAAAT
36659363 TTAA-ATATTTTATTAAAAT
1 TTAATATATTTTATTAAAAT
36659382 AAATCTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATATATTTTATTAAAAT
Found at i:36666272 original size:16 final size:16
Alignment explanation
Indices: 36666204--36666272 Score: 52
Period size: 17 Copynumber: 4.2 Consensus size: 16
36666194 AAAATAATAT
*
36666204 TATTTTAATAGATTTAA
1 TATTTTATTA-ATTTAA
* *
36666221 TATTTAATTAAATTTAT
1 TATTTTATT-AATTTAA
* *
36666238 TATTTATCTTAA--TAG
1 TATTT-TATTAATTTAA
36666253 TATTTTATTAATTTAA
1 TATTTTATTAATTTAA
36666269 TATT
1 TATT
36666273 AAAATGATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
14 5 0.12
15 7 0.17
16 6 0.15
17 19 0.47
18 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (16 bp):
TATTTTATTAATTTAA
Found at i:36668310 original size:32 final size:32
Alignment explanation
Indices: 36668273--36668353 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
36668263 AAAGGTCTAG
* * *
36668273 GCCATTTTGGGTTGTGTGGGCTAGACGGATGA
1 GCCATTTTGGGTCGTGTGAGCCAGACGGATGA
* *
36668305 GCCATTTTGGGTCGTGTGAGCCATACGGGTGA
1 GCCATTTTGGGTCGTGTGAGCCAGACGGATGA
* *
36668337 GCCATTTTAGGCCGTGT
1 GCCATTTTGGGTCGTGT
36668354 AGGCCACACA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.15, C:0.17, G:0.37, T:0.31
Consensus pattern (32 bp):
GCCATTTTGGGTCGTGTGAGCCAGACGGATGA
Found at i:36676607 original size:14 final size:15
Alignment explanation
Indices: 36676588--36676616 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36676578 AACTAAAACC
36676588 ATAAATCG-ATAATT
1 ATAAATCGTATAATT
36676602 ATAAATCGTATAATT
1 ATAAATCGTATAATT
36676617 CCAAAAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (15 bp):
ATAAATCGTATAATT
Found at i:36686163 original size:23 final size:24
Alignment explanation
Indices: 36686116--36686204 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 24
36686106 TTCTTGTTAC
* **
36686116 ATGGCTCTTTGTGAGCTTCTTGAT
1 ATGGCTCTTTATGAGCTTCCCGAT
*
36686140 A-GGCTCTTCATGAGCTTCCCGAT
1 ATGGCTCTTTATGAGCTTCCCGAT
** **
36686163 ATGATTCTTTATGAAATTCCCGATT
1 ATGGCTCTTTATGAGCTTCCCGA-T
36686188 ATGGCTC-TTATGAGCTT
1 ATGGCTCTTTATGAGCTT
36686205 TCCGTTATAT
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
23 19 0.38
24 25 0.50
25 6 0.12
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (24 bp):
ATGGCTCTTTATGAGCTTCCCGAT
Found at i:36686176 original size:24 final size:25
Alignment explanation
Indices: 36686143--36686212 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 25
36686133 TCTTGATAGG
*
36686143 CTCTTCATGAGCTTCCCGA-TATGA
1 CTCTTTATGAGCTTCCCGATTATGA
* ** *
36686167 TTCTTTATGAAATTCCCGATTATGG
1 CTCTTTATGAGCTTCCCGATTATGA
*
36686192 CTC-TTATGAGCTTTCCG-TTAT
1 CTCTTTATGAGCTTCCCGATTAT
36686213 ATAACCCGGA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
23 4 0.11
24 26 0.72
25 6 0.17
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (25 bp):
CTCTTTATGAGCTTCCCGATTATGA
Found at i:36689665 original size:74 final size:74
Alignment explanation
Indices: 36689522--36689675 Score: 245
Period size: 74 Copynumber: 2.1 Consensus size: 74
36689512 AAAAAAAAAT
* * *
36689522 ACTTTAGTATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCCAAATTATTCTTTTTGAAT
1 ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCAAAATCATTCTTTTTGAAT
36689587 TTTTTATTA
66 TTTTTATTA
* *
36689596 ACTTTAATATAATAAATTTGAATCGTTAAGTTACTTATTTAAGTCTTAAAATCATTCTTTTTGAA
1 ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTC-CAAAATCATTCTTTTTGAA
*
36689661 TTTTTTGTTA
65 TTTTTTATTA
36689671 ACTTT
1 ACTTT
36689676 TTCTATATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 43 0.59
75 30 0.41
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (74 bp):
ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCAAAATCATTCTTTTTGAAT
TTTTTATTA
Found at i:36693617 original size:8 final size:9
Alignment explanation
Indices: 36693582--36693618 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
36693572 AATTTTTAAT
36693582 TTTAAAATA
1 TTTAAAATA
36693591 TTTAAAATA
1 TTTAAAATA
36693600 TTTAAAATA
1 TTTAAAATA
36693609 TTT-AAATA
1 TTTAAAATA
36693617 TT
1 TT
36693619 AATATCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
TTTAAAATA
Found at i:36693628 original size:28 final size:27
Alignment explanation
Indices: 36693597--36693682 Score: 63
Period size: 29 Copynumber: 3.1 Consensus size: 27
36693587 AATATTTAAA
36693597 ATATTTAAAATATTTAAATATTAATATC
1 ATATTTAAAATATTTAAATATTAATA-C
*
36693625 ATATATTATAAT-TTTCAATAGTATTAATAC
1 ATAT-TTAAAATATTT-AA-A-TATTAATAC
* * *
36693655 TTATTT-AATTATTTATAT-TTAATA-
1 ATATTTAAAATATTTAAATATTAATAC
36693679 ATAT
1 ATAT
36693683 AATAAATGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
24 3 0.06
25 6 0.13
26 1 0.02
27 1 0.02
28 10 0.21
29 13 0.28
30 5 0.11
31 8 0.17
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (27 bp):
ATATTTAAAATATTTAAATATTAATAC
Found at i:36699433 original size:93 final size:93
Alignment explanation
Indices: 36699321--36699492 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36699311 GCCCATAAGT
* *
36699321 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36699386 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36699414 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36699479 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36699493 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36699488 original size:46 final size:46
Alignment explanation
Indices: 36699313--36699488 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36699303 TGTAACCCGC
* * *
36699313 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
36699359 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36699409 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
36699452 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36699489 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36701917 original size:30 final size:30
Alignment explanation
Indices: 36701873--36701961 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
36701863 CAAAGATAAC
36701873 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
36701902 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
36701932 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
36701962 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:36701921 original size:15 final size:15
Alignment explanation
Indices: 36701873--36701952 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
36701863 CAAAGATAAC
*
36701873 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
36701887 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
36701902 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
36701917 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
36701932 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
36701947 AAGAAA
1 AAGAAA
36701953 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:36701961 original size:15 final size:15
Alignment explanation
Indices: 36701884--36701961 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36701874 AGAAAACCGA
36701884 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36701899 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36701913 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36701928 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
36701944 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36701959 ATA
1 ATA
36701962 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36704990 original size:93 final size:93
Alignment explanation
Indices: 36704878--36705049 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36704868 GCCCATAAGT
* *
36704878 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36704943 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36704971 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36705036 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36705050 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36705045 original size:46 final size:46
Alignment explanation
Indices: 36704870--36705045 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36704860 TGTAACCCGC
* * *
36704870 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
36704916 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36704966 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
36705009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36705046 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36714313 original size:2 final size:2
Alignment explanation
Indices: 36714308--36714332 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36714298 AAAAAACAAA
36714308 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36714333 AAAGTTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36714773 original size:7 final size:7
Alignment explanation
Indices: 36714758--36714786 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
36714748 TTGTATTTAT
36714758 AAAAA-A
1 AAAAAGA
36714764 AAAAAGA
1 AAAAAGA
36714771 AAAAAGA
1 AAAAAGA
36714778 AAAAAGA
1 AAAAAGA
36714785 AA
1 AA
36714787 TCCAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:36715746 original size:19 final size:20
Alignment explanation
Indices: 36715707--36715747 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
36715697 ATAACACACA
36715707 TAATCACTCTTTTGAAAATTC
1 TAATCACTCTTTT-AAAATTC
*
36715728 TAATTACTCTTTT-AAATTC
1 TAATCACTCTTTTAAAATTC
36715747 T
1 T
36715748 TTTTAGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATCACTCTTTTAAAATTC
Found at i:36717759 original size:19 final size:19
Alignment explanation
Indices: 36717735--36717772 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36717725 CTTTGCCAAC
*
36717735 AATTAATTAATTTTAAAAA
1 AATTAAATAATTTTAAAAA
*
36717754 AATTAAATATTTTTAAAAA
1 AATTAAATAATTTTAAAAA
36717773 GTATAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAAATAATTTTAAAAA
Found at i:36718283 original size:2 final size:2
Alignment explanation
Indices: 36718262--36718342 Score: 109
Period size: 2 Copynumber: 42.5 Consensus size: 2
36718252 TTCCAATAAG
*
36718262 AT AT GAT AT CT AT A- AT AT AT AT AT -T A- AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36718302 AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36718342 A
1 A
36718343 ACCACGAGTT
Statistics
Matches: 71, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
1 5 0.07
2 64 0.90
3 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36720211 original size:21 final size:21
Alignment explanation
Indices: 36720185--36720232 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
36720175 TCTTGGATGG
*
36720185 TCTCTTCAAACCACCATCCTT
1 TCTCTTCAAACCACCACCCTT
*
36720206 TCTCTTCAAACCTCCACCCTT
1 TCTCTTCAAACCACCACCCTT
*
36720227 TTTCTT
1 TCTCTT
36720233 TTCTGAAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.40
Consensus pattern (21 bp):
TCTCTTCAAACCACCACCCTT
Found at i:36720643 original size:22 final size:21
Alignment explanation
Indices: 36720614--36720658 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
36720604 CCAGACCGAT
36720614 AACCCAACCTATCCACGATCC
1 AACCCAACCTATCCACGATCC
*
36720635 AACCACAACCTATTCACGATCC
1 AACC-CAACCTATCCACGATCC
36720657 AA
1 AA
36720659 ACAGTCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.38, C:0.42, G:0.04, T:0.16
Consensus pattern (21 bp):
AACCCAACCTATCCACGATCC
Found at i:36723395 original size:12 final size:12
Alignment explanation
Indices: 36723367--36723423 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 12
36723357 TCTTTAACAA
36723367 TTTTC-CCTTTT
1 TTTTCTCCTTTT
*
36723378 TCTTTTTCCTTTT
1 T-TTTCTCCTTTT
36723391 ATTTTCTCTCTTCTT
1 -TTTTCTC-CTT-TT
36723406 TTTTCTCCTTTT
1 TTTTCTCCTTTT
*
36723418 TCTTCT
1 TTTTCT
36723424 TCTAGTAGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.03
12 10 0.26
13 14 0.37
14 11 0.29
15 2 0.05
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTCTCCTTTT
Found at i:36723797 original size:16 final size:15
Alignment explanation
Indices: 36723747--36723807 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
36723737 TGATAAACTG
*
36723747 AAAAAATCAAATACTA
1 AAAAAATTAAATA-TA
* * *
36723763 AAAAAATTTAGTGTTA
1 AAAAAATTAAAT-ATA
36723779 AAAAAATTAAATAT-
1 AAAAAATTAAATATA
36723793 AAAAAATATAAATAT
1 AAAAAAT-TAAATAT
36723808 TAAATTTAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
14 7 0.19
15 8 0.22
16 21 0.58
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (15 bp):
AAAAAATTAAATATA
Found at i:36734613 original size:40 final size:40
Alignment explanation
Indices: 36734558--36734815 Score: 394
Period size: 40 Copynumber: 6.5 Consensus size: 40
36734548 TGGATGATAA
36734558 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36734598 CCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36734638 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36734678 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36734718 CCGGGCTACGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
36734758 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36734798 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36734816 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 15 0.07
40 188 0.93
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.