Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 138 of 444
Found at i:36739876 original size:24 final size:24
Alignment explanation
Indices: 36739632--36739874 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
36739622 GCAAAGACCA
36739632 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36739656 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
36739680 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
36739704 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36739728 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
36739752 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
36739776 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
36739800 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36739824 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
36739848 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
36739872 TAT
1 TAT
36739875 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:36747885 original size:24 final size:24
Alignment explanation
Indices: 36747641--36747883 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
36747631 GCAAAGACCA
36747641 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36747665 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
36747689 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
36747713 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36747737 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
36747761 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
36747785 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
36747809 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
36747833 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
36747857 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
36747881 TAT
1 TAT
36747884 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:36754273 original size:79 final size:80
Alignment explanation
Indices: 36754122--36754378 Score: 394
Period size: 79 Copynumber: 3.2 Consensus size: 80
36754112 TGGATGATAA
36754122 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
36754187 TGTGAGTTACCATAT
66 TGCGAGTTACTATAT
*
36754202 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTAC-ATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
36754266 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * *
36754281 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTATGTCCCGAAGGTATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
36754346 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
36754361 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36754379 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 91 0.55
80 73 0.45
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:36754334 original size:119 final size:119
Alignment explanation
Indices: 36754122--36754339 Score: 400
Period size: 119 Copynumber: 1.8 Consensus size: 119
36754112 TGGATGATAA
36754122 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
**
36754187 TGTGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACATAT
66 TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACATAT
36754241 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
36754306 TGCAAGTTACTATATCCGGGCTATGTCCCGAAGG
66 TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGG
36754340 TATTCGAGCG
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 95 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACATAT
Found at i:36754352 original size:119 final size:120
Alignment explanation
Indices: 36754122--36754378 Score: 396
Period size: 119 Copynumber: 2.2 Consensus size: 120
36754112 TGGATGATAA
36754122 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
** *
36754187 TGTGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-C-ATAT
66 TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGTACGAG-TAGCTATAT
36754241 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
36754306 TGCAAGTTACTATATCCGGGCTATGTCCCGAAGGTATTCG-AGCGAGTAGCTATAT
66 TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGTA-CGAGTAGCTATAT
* *
36754361 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36754379 TACTTGGCTT
Statistics
Matches: 127, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
118 3 0.02
119 118 0.93
120 6 0.05
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGTACGAGTAGCTATAT
Found at i:36754380 original size:39 final size:40
Alignment explanation
Indices: 36754122--36754378 Score: 394
Period size: 40 Copynumber: 6.5 Consensus size: 40
36754112 TGGATGATAA
36754122 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36754162 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36754202 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTAC-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36754241 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36754281 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
36754321 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36754361 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36754379 TACTTGGCTT
Statistics
Matches: 201, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 53 0.26
40 148 0.74
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36764908 original size:40 final size:40
Alignment explanation
Indices: 36764806--36764989 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
36764796 AAATTGAATG
* * * * *
36764806 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
36764846 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36764886 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
36764926 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
36764966 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36764990 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:36773014 original size:40 final size:40
Alignment explanation
Indices: 36772912--36773095 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
36772902 AAATTGAATG
* * * * *
36772912 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
36772952 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36772992 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
36773032 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
36773072 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36773096 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:36774730 original size:84 final size:83
Alignment explanation
Indices: 36774608--36774797 Score: 197
Period size: 84 Copynumber: 2.3 Consensus size: 83
36774598 ATTTCATATG
* * **
36774608 GACTACCTTTCAAGAAAGAGTCTACAAGGACTACCTTTCAAGTAAGAGTCCACATAG-ACTATCT
1 GACTATCTTTCAAGCAAGAGTCTACAAGGACTACCTTTCAAACAAGAGTCCACAT-GTACTATCT
*
36774672 CTCAAGCAAGAGTCCACATT
65 CTCAAACAAGAGTCCACA-T
* * ***
36774692 GACTATCTTTCAAGCAAGAGTCTGCATA-GACTATCTTTCAAACAAGAGTTTGCATGTACTATCT
1 GACTATCTTTCAAGCAAGAGTCTACA-AGGACTACCTTTCAAACAAGAGTCCACATGTACTATCT
* *
36774756 TTCAAACAAGAGTTCACAT
65 CTCAAACAAGAGTCCACAT
*
36774775 GAACTAT-TCTTCAAGCAACAGTC
1 G-ACTATCT-TTCAAGCAAGAGTC
36774798 CGCAAGAACT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
83 4 0.04
84 84 0.94
85 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (83 bp):
GACTATCTTTCAAGCAAGAGTCTACAAGGACTACCTTTCAAACAAGAGTCCACATGTACTATCTC
TCAAACAAGAGTCCACAT
Found at i:36774737 original size:28 final size:28
Alignment explanation
Indices: 36774608--36774768 Score: 157
Period size: 28 Copynumber: 5.8 Consensus size: 28
36774598 ATTTCATATG
*
36774608 GACTACCTTTCAAGA-AAGAGTCTACA-A
1 GACTATCTTTCAA-ACAAGAGTCTACATA
* ** *
36774635 GGACTACCTTTCAAGTAAGAGTCCACATA
1 -GACTATCTTTCAAACAAGAGTCTACATA
* * * *
36774664 GACTATCTCTCAAGCAAGAGTCCACATT
1 GACTATCTTTCAAACAAGAGTCTACATA
* *
36774692 GACTATCTTTCAAGCAAGAGTCTGCATA
1 GACTATCTTTCAAACAAGAGTCTACATA
* *
36774720 GACTATCTTTCAAACAAGAGTTTGCAT-
1 GACTATCTTTCAAACAAGAGTCTACATA
36774747 GTACTATCTTTCAAACAAGAGT
1 G-ACTATCTTTCAAACAAGAGT
36774769 TCACATGAAC
Statistics
Matches: 118, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.01
28 116 0.98
29 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (28 bp):
GACTATCTTTCAAACAAGAGTCTACATA
Found at i:36774775 original size:28 final size:27
Alignment explanation
Indices: 36774608--36774792 Score: 151
Period size: 28 Copynumber: 6.6 Consensus size: 27
36774598 ATTTCATATG
* * *
36774608 GACTACCTTTCAAGAAAGAG-TCTACAAG
1 GACTATCTTTCAAGCAAGAGTTC-AC-AT
* * *
36774636 GACTACCTTTCAAGTAAGAGTCCACAT
1 GACTATCTTTCAAGCAAGAGTTCACAT
* *
36774663 AGACTATCTCTCAAGCAAGAGTCCACATT
1 -GACTATCTTTCAAGCAAGAGTTCACA-T
*
36774692 GACTATCTTTCAAGCAAGAG-TCTGCAT
1 GACTATCTTTCAAGCAAGAGTTC-ACAT
* **
36774719 AGACTATCTTTCAAACAAGAGTTTGCAT
1 -GACTATCTTTCAAGCAAGAGTTCACAT
*
36774747 GTACTATCTTTCAAACAAGAGTTCACAT
1 G-ACTATCTTTCAAGCAAGAGTTCACAT
36774775 GAACTAT-TCTTCAAGCAA
1 G-ACTATCT-TTCAAGCAA
36774793 CAGTCCGCAA
Statistics
Matches: 134, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
27 5 0.04
28 126 0.94
29 3 0.02
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (27 bp):
GACTATCTTTCAAGCAAGAGTTCACAT
Found at i:36776325 original size:2 final size:2
Alignment explanation
Indices: 36776318--36776348 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
36776308 AGTAGGAGGG
36776318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36776349 GGAGAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36777427 original size:14 final size:14
Alignment explanation
Indices: 36777408--36777493 Score: 100
Period size: 14 Copynumber: 6.1 Consensus size: 14
36777398 AATCTGCATT
36777408 TATGAATTCACATG
1 TATGAATTCACATG
* * *
36777422 TATGAATTCGCCTA
1 TATGAATTCACATG
*
36777436 TATGGATTCACATG
1 TATGAATTCACATG
*
36777450 TATGAATTCGCATG
1 TATGAATTCACATG
* *
36777464 TATGAATCCACATC
1 TATGAATTCACATG
*
36777478 TATGAATCCACATG
1 TATGAATTCACATG
36777492 TA
1 TA
36777494 AGAGTCCGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 59 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (14 bp):
TATGAATTCACATG
Found at i:36779660 original size:35 final size:35
Alignment explanation
Indices: 36779614--36779685 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
36779604 TGATGACCAT
36779614 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
1 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
36779649 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
1 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
36779684 GT
1 GT
36779686 TCATATGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (35 bp):
GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
Found at i:36783127 original size:20 final size:20
Alignment explanation
Indices: 36783102--36783143 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
36783092 TATTTTTCCT
36783102 AAACTTTCTAAATTGTTTCA
1 AAACTTTCTAAATTGTTTCA
36783122 AAACTTTCTAAATTGTTTCA
1 AAACTTTCTAAATTGTTTCA
36783142 AA
1 AA
36783144 TTGGTCTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (20 bp):
AAACTTTCTAAATTGTTTCA
Found at i:36786966 original size:40 final size:40
Alignment explanation
Indices: 36786858--36787067 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
36786848 CGGGATTTAA
* * * * * *
36786858 CCGGATATAGCGACTCGCACGATTGCCTTCAGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
36786898 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36786938 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36786978 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36787018 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36787058 CCGGATATAT
1 CCGGATATAT
36787068 TTCCAATGTT
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:36790598 original size:13 final size:13
Alignment explanation
Indices: 36790580--36790610 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
36790570 AAATCAGATC
36790580 TTTACTACTCATT
1 TTTACTACTCATT
36790593 TTTACTACTCATT
1 TTTACTACTCATT
36790606 TTTAC
1 TTTAC
36790611 AACTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTACTACTCATT
Found at i:36792346 original size:46 final size:47
Alignment explanation
Indices: 36792296--36792473 Score: 227
Period size: 47 Copynumber: 3.8 Consensus size: 47
36792286 ATAATTTCAC
* *
36792296 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* *
36792342 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * *
36792388 CCATAAGTGAACTCAGAATGCAACTCAACGAGTTCGGATGCTTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCA-CAT
* * *
36792437 TC-TCATGAACTCGGAATGCAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
36792474 CTCAATTTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
46 45 0.39
47 66 0.57
48 2 0.02
49 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:36795619 original size:48 final size:48
Alignment explanation
Indices: 36795494--36795731 Score: 248
Period size: 48 Copynumber: 4.9 Consensus size: 48
36795484 AAAAGGGTAA
* * *
36795494 AATGCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCAT-AC
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
* * *
36795541 ATTGGTGTCGATGCCAT-TTCCCAGACATGGTCTTACACTAGCTCACATAAC
1 A---ATGCCGATGCCATGTT-CCAGACATGGTCTTACACTGGCTCACATAAC
* * **
36795592 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-AGTATATT
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCA-CATAAC
* * * ** *
36795640 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCGTAAC
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
* *
36795688 AATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACA
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACA
36795732 CATAACCCTA
Statistics
Matches: 153, Mismatches: 30, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
47 2 0.01
48 109 0.71
49 3 0.02
50 36 0.24
51 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
Found at i:36795688 original size:96 final size:96
Alignment explanation
Indices: 36795490--36795734 Score: 341
Period size: 96 Copynumber: 2.5 Consensus size: 96
36795480 TACAAAAAGG
* ** * *
36795490 GTAA-AATGCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATACATTGGTGTCGATG
1 GTAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGG--CTCATACATTGATGCCGATG
*
36795554 CCATTTCCCAGACATGGTCTTACACTAGCTCAC
64 CCATGTCCCAGACATGGTCTTACACTAGCTCAC
* *
36795587 ATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-AGTATATTGATGCCGATGC
1 GTAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCA-TACATTGATGCCGATGC
**
36795651 CATGTCCCAGACATGGTCTTACACTAGCTTTC
65 CATGTCCCAGACATGGTCTTACACTAGCTCAC
* *
36795683 GTAACAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACAT
1 GTAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATACAT
36795735 AACCCTAGTA
Statistics
Matches: 131, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
95 1 0.01
96 91 0.69
97 4 0.03
98 35 0.27
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (96 bp):
GTAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATACATTGATGCCGATGCC
ATGTCCCAGACATGGTCTTACACTAGCTCAC
Found at i:36799334 original size:28 final size:28
Alignment explanation
Indices: 36799294--36799386 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
36799284 ATGTACTAGA
36799294 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
36799322 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
36799350 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
36799378 ATACCCCTA
1 ATACCCCTA
36799387 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:36799550 original size:27 final size:27
Alignment explanation
Indices: 36799492--36799573 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 27
36799482 AGGAAGCGTC
*
36799492 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36799520 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36799547 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-AAATATCTGT
36799574 ATCTTGTGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 22 0.47
28 25 0.53
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36799600 original size:55 final size:56
Alignment explanation
Indices: 36799492--36799606 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
36799482 AGGAAGCGTC
* *
36799492 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * * *
36799547 CTGGTGGC-ACTGCCACAAAATATCTGTATCTTGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
36799603 CTGG
1 CTGG
36799607 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36801420 original size:30 final size:30
Alignment explanation
Indices: 36801374--36801547 Score: 271
Period size: 30 Copynumber: 5.8 Consensus size: 30
36801364 ACTTTTCTCA
*
36801374 ACTAGCCAC-TCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
36801403 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
36801433 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
36801463 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* * *
36801493 ACTGGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
36801523 ACTAGCCACACCTTCTT-CACCACCA
1 ACTAGCCACACCTT-TTCCACCACCA
36801548 CTTGTACCTA
Statistics
Matches: 132, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
29 9 0.07
30 121 0.92
31 2 0.02
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:36801459 original size:60 final size:60
Alignment explanation
Indices: 36801374--36801547 Score: 316
Period size: 60 Copynumber: 2.9 Consensus size: 60
36801364 ACTTTTCTCA
36801374 ACTAGCCACTC-TTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
36801433 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
*
36801493 ACTGGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTT-CACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTT-TTCCACCACCA
36801548 CTTGTACCTA
Statistics
Matches: 112, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
59 11 0.10
60 99 0.88
61 2 0.02
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:36802074 original size:23 final size:23
Alignment explanation
Indices: 36802037--36802166 Score: 72
Period size: 23 Copynumber: 5.5 Consensus size: 23
36802027 CCTTTTTTGT
36802037 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
36802060 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
36802082 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
36802105 TATTACGTATATATATATT-ATACTA
1 TATTA--TATATAT-TCTTAATATTA
* *
36802130 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
36802155 TATTATTTATAT
1 TATTATATATAT
36802167 ATATATATAT
Statistics
Matches: 81, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 26 0.32
24 6 0.07
25 26 0.32
26 2 0.02
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:36802130 original size:25 final size:25
Alignment explanation
Indices: 36802102--36802248 Score: 84
Period size: 25 Copynumber: 5.7 Consensus size: 25
36802092 ATTTTAAATT
*
36802102 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATATATTATA
* *
36802127 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATT-ATA
* *
36802152 TTATATTATTTATATATATATATATA
1 CTATATTATGTATATATATAT-TATA
* * * *
36802178 TTTACATTTATCTTATGTATATATCT-TAA
1 -CTATA-TTAT-GTATATATATAT-TAT-A
* * *
36802207 CTATATTATGTATGTAT-TTTTAACA
1 CTATATTATGTATATATATATT-ATA
*
36802232 CTATATTATGTACATAT
1 CTATATTATGTATATAT
36802249 TTTTAATATT
Statistics
Matches: 96, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
24 3 0.03
25 52 0.54
26 11 0.11
27 9 0.09
28 8 0.08
29 13 0.14
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.53
Consensus pattern (25 bp):
CTATATTATGTATATATATATTATA
Found at i:36802142 original size:27 final size:26
Alignment explanation
Indices: 36802112--36802219 Score: 87
Period size: 25 Copynumber: 4.0 Consensus size: 26
36802102 CTATATTACG
36802112 TATATATATATTATACTATTTTATGTA
1 TATATATATATTATACTA-TTTATGTA
* * *
36802139 TATATCTTTAATATTATATTATTTATATA
1 TATA--TAT-ATATTATACTATTTATGTA
*
36802168 TATATATATATT-TAC-ATTTATCTTA
1 TATATATATATTATACTATTTAT-GTA
* *
36802193 TGTATATATCTTA-ACTATATTATGTA
1 TATATATATATTATACTAT-TTATGTA
36802219 T
1 T
36802220 GTATTTTTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
24 6 0.09
25 16 0.25
26 10 0.15
27 10 0.15
29 13 0.20
30 10 0.15
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (26 bp):
TATATATATATTATACTATTTATGTA
Found at i:36802199 original size:33 final size:33
Alignment explanation
Indices: 36802137--36802201 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
36802127 CTATTTTATG
* *
36802137 TATATATCTTTAATATTATATTATTTATATATA
1 TATATATATTTAATATTATATTATGTATATATA
*
36802170 TATATATATTTACAT-TTATCTTATGTATATAT
1 TATATATATTTA-ATATTATATTATGTATATAT
36802202 CTTAACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (33 bp):
TATATATATTTAATATTATATTATGTATATATA
Found at i:36802249 original size:25 final size:25
Alignment explanation
Indices: 36802206--36802254 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
36802196 ATATATCTTA
**
36802206 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
36802231 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
36802255 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:36802432 original size:16 final size:15
Alignment explanation
Indices: 36802408--36802455 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
36802398 TAATTGTTAT
*
36802408 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
36802424 TATTTTAATATTTTA
1 TATTTTAATATTTTA
36802439 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
36802455 T
1 T
36802456 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:36802443 original size:7 final size:8
Alignment explanation
Indices: 36802408--36802459 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
36802398 TAATTGTTAT
*
36802408 TATTCTAA
1 TATTTTAA
*
36802416 TATTTTGA
1 TATTTTAA
36802424 TATTTTAA
1 TATTTTAA
36802432 TATTTT-A
1 TATTTTAA
36802439 TATTTTATA
1 TATTTTA-A
*
36802448 TATTTTAT
1 TATTTTAA
36802456 TATT
1 TATT
36802460 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:36804047 original size:12 final size:12
Alignment explanation
Indices: 36804030--36804065 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
36804020 ATTCATTTGA
36804030 CATTCATGCATT
1 CATTCATGCATT
36804042 CATTCATGCATT
1 CATTCATGCATT
*
36804054 CATTCATACATT
1 CATTCATGCATT
36804066 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:36807859 original size:73 final size:74
Alignment explanation
Indices: 36807680--36807865 Score: 293
Period size: 73 Copynumber: 2.5 Consensus size: 74
36807670 TCGTAAAAAA
* * * *
36807680 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
*
36807745 CTGTTTTTC
66 CTGTTTGTC
* *
36807754 AAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
36807818 CTGTTTGTC
66 CTGTTTGTC
*
36807827 AAAAATTAACTCATATTGAGAGAGGTGAGTTGAGCCTCG
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
36807866 ACTCACATGC
Statistics
Matches: 103, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
73 53 0.51
74 50 0.49
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (74 bp):
AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
CTGTTTGTC
Found at i:36808030 original size:239 final size:240
Alignment explanation
Indices: 36807498--36808069 Score: 860
Period size: 241 Copynumber: 2.4 Consensus size: 240
36807488 TGATGTTTTT
* * * *
36807498 ATTTCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGTTTTTC--AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
** * * * * *
36807563 GGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTACAAGAGGTGGGTTGAGCCTCGGCT
64 GGTAATTTCAATTTCTGTTCATCAAAAATTAACTCATATTACAAGAGGTGAGTTGAGCCTCGACT
* * *
36807628 CACATGCTGAGGTCTTTTTAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAAATCAACTCA
129 CACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGT-AAAAAAAAAATCAACTCA
*
36807693 TATTGCGAGAGGTGAGTTGGGCCTCAGGACACGCTGAGGTATTTTTAA
193 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
*
36807741 ATTTCTGTTTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
** *
36807806 TAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGA-GAGAGGTGAGTTGAGCCTCGACTC
66 TAATTTCAATTTCTGTTCATCAAAAATTAACTCATATT-ACAAGAGGTGAGTTGAGCCTCGACTC
36807870 ACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGT-AAAAAAAAATCAACTCATA
130 ACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATA
36807934 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
195 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
* *
36807980 ATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGA
1 ATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGA
** *
36808045 GGTCTTTTCAATTTCTGTTCTTCAA
64 GGTAATTTCAATTTCTGTTCATCAA
36808070 TTTCTGTTCA
Statistics
Matches: 300, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
239 116 0.39
241 171 0.57
242 1 0.00
243 12 0.04
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (240 bp):
ATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
TAATTTCAATTTCTGTTCATCAAAAATTAACTCATATTACAAGAGGTGAGTTGAGCCTCGACTCA
CATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
Found at i:36808070 original size:14 final size:14
Alignment explanation
Indices: 36808051--36808078 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36808041 CTGAGGTCTT
36808051 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36808065 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36808079 ATAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:36808081 original size:74 final size:74
Alignment explanation
Indices: 36807919--36808069 Score: 216
Period size: 74 Copynumber: 2.0 Consensus size: 74
36807909 GTTCGTAAAA
* *
36807919 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTACTTTTAAATTT
*
36807984 CTGTTTTTC
66 CTGTTCTTC
* *
36807993 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGT-CTTTTCAA
1 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTACTTTTAAA
36808056 TTTCTGTTCTTC
63 TTTCTGTTCTTC
36808068 AA
1 AA
36808070 TTTCTGTTCA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
73 2 0.03
74 37 0.54
75 19 0.28
76 11 0.16
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (74 bp):
AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTACTTTTAAATTT
CTGTTCTTC
Found at i:36808173 original size:92 final size:90
Alignment explanation
Indices: 36807993--36808162 Score: 225
Period size: 92 Copynumber: 1.9 Consensus size: 90
36807983 TCTGTTTTTC
* * *
36807993 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTCTTTTAAATT
** *
36808058 TCTGTTCTTCAATTTCTGTTCATAAAA
64 TCTGTTCTTCAAAATCTGCTCATAAAA
*
36808085 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGT-CTTTTAAATT
*
36808149 TCTGTTTTTCAAAA
64 TCTGTTCTTCAAAA
36808163 ATTGACTCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
90 11 0.16
91 19 0.28
92 37 0.54
93 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (90 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTCTTTTAAATTTC
TGTTCTTCAAAATCTGCTCATAAAA
Found at i:36808249 original size:405 final size:406
Alignment explanation
Indices: 36807511--36808466 Score: 1659
Period size: 405 Copynumber: 2.4 Consensus size: 406
36807501 TCTGATTTTC
* **
36807511 AAAAAAATCAACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
* ** * * * * *
36807575 TTATGTTCATCAAAAATTAGCTCATATTACAAGAGGTGGGTTGAGCCTCGGCTCACATGCTGAGG
66 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
* *
36807640 TCTTTTTAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAAATCAACTCATATTGCGAGAGG
131 TCTTTTCAATTTCTGTTCTTCAATTTCTGTTCG-AAAAAAAAAAATCAACTCATATTGCGAGAGG
*
36807705 TGAGTTGGGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATAT
195 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATAT
36807770 TGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTA
260 TGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTA
36807835 ACTCATATTGAGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTATTCT
325 ACTCATATTGAGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTATTCT
*
36807900 TCAATTTCTGTTCGTAA
390 TCAATTTCTGTTAGTAA
36807917 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
*
36807982 TTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
66 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
*
36808047 TCTTTTCAATTTCTGTTCTTCAATTTCTGTTC-ATAAAAAAAAATCAACTCATATTGCGAGAGGT
131 TCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGAAAAAAAAAAATCAACTCATATTGCGAGAGGT
36808111 GAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATATT
196 GAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATATT
36808176 GCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAA
261 GCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAA
* * *
36808241 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTT
326 CTCATATTGAGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTATTCTT
36808306 CAATTTCTGTTAGTAA
391 CAATTTCTGTTAGTAA
36808322 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
*
36808387 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGG
66 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
** *
36808450 TAATTTCAATTTTTGTT
131 TCTTTTCAATTTCTGTT
36808467 TGTCAAAAAT
Statistics
Matches: 524, Mismatches: 25, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
403 25 0.05
405 352 0.67
406 58 0.11
407 89 0.17
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (406 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
TCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGAAAAAAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATATT
GCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAA
CTCATATTGAGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTATTCTT
CAATTTCTGTTAGTAA
Found at i:36808264 original size:73 final size:73
Alignment explanation
Indices: 36808085--36808538 Score: 401
Period size: 73 Copynumber: 5.9 Consensus size: 73
36808075 GTTCATAAAA
* * *
36808085 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
36808150 CTGTTTTTC
65 CTGTTTGTC
* *
36808159 AAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
36808224 TGTTTGTC
66 TGTTTGTC
* * *
36808232 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
*
36808297 TCTGTTCTTCAATTTCTGTT
64 TCTG---------TT-TGTC
** * * * * * *
36808317 AGTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
1 A--AAAATTAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCGGGACACGCTGAGGTA-
* *
36808379 TTTTAAATTTCTGTTTTTC
55 TTTTCAATTTCTGTTTGTC
* * * *
36808398 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
36808463 TGTTTGTC
66 TGTTTGTC
* * * *
36808471 AAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
36808536 TCT
64 TCT
36808539 ATTCTTCAAT
Statistics
Matches: 307, Mismatches: 45, Indels: 55
0.75 0.11 0.14
Matches are distributed among these distances:
73 108 0.35
74 69 0.22
75 45 0.15
79 17 0.06
80 3 0.01
81 4 0.01
82 4 0.01
84 4 0.01
85 5 0.02
86 3 0.01
87 17 0.06
90 11 0.04
91 12 0.04
92 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (73 bp):
AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:36808309 original size:14 final size:14
Alignment explanation
Indices: 36808290--36808316 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36808280 CTGAGGTCTT
36808290 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36808304 TTCAATTTCTGTT
1 TTCAATTTCTGTT
36808317 AGTAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.19, G:0.07, T:0.59
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:36808416 original size:479 final size:478
Alignment explanation
Indices: 36807919--36809272 Score: 2419
Period size: 479 Copynumber: 2.8 Consensus size: 478
36807909 GTTCGTAAAA
* * * *
36807919 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA-ATTTCAATTT
* **
36807984 CTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
65 CTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
*
36808049 TTTTCAATTTCTGTTCTTCAATTTCTGTTCATAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
130 TTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAG
**
36808114 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATTGACTCATATTGCG
194 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
36808179 AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
259 AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
36808244 ATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAA
324 ATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAA
36808309 TTTCTGTTAGT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
389 TTTCTGTTAGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
36808373 AGGTATTTTTAAATTTCTGTTTTTC
454 AGGTATTTTTAAATTTCTGTTTTTC
*
36808398 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
*
36808463 TGTTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* *
36808528 TTTCAATTTCTATTCTTCAATTTCTATTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
36808593 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG
196 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG
36808658 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCAT
261 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCAT
* *
36808723 ATTGTGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATT
326 ATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATT
*
36808788 TCTGTTCGTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
391 TCTGTTAGT-AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
36808853 GGTATTTTTAAATTTCTGTTTTTC
455 GGTATTTTTAAATTTCTGTTTTTC
36808877 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
*
36808942 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
36809007 TTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
36809071 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTT-TGATTTTCAAAAAAATCAACTCATATTGTG
196 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCG
*
36809135 AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
259 AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
* *
36809200 ATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTT-TTCA
324 ATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG-TTCTTCA
36809264 ATTTCTGTT
388 ATTTCTGTT
36809273 TTTTCAATTT
Statistics
Matches: 841, Mismatches: 29, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
477 240 0.29
478 164 0.20
479 435 0.52
480 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (478 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCAT
ATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATT
TCTGTTAGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTATTTTTAAATTTCTGTTTTTC
Found at i:36808548 original size:14 final size:14
Alignment explanation
Indices: 36808529--36808556 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36808519 CTGAGGTCTT
36808529 TTCAATTTCTATTC
1 TTCAATTTCTATTC
36808543 TTCAATTTCTATTC
1 TTCAATTTCTATTC
36808557 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTATTC
Found at i:36808669 original size:74 final size:72
Alignment explanation
Indices: 36808562--36808785 Score: 313
Period size: 74 Copynumber: 3.0 Consensus size: 72
36808552 TATTCGTAAA
*
36808562 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-TTTTCAATTT
36808627 CTGTTTTTC
64 CTGTTTTTC
*
36808636 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTCAATTTC
*
36808701 TGTTTGTC
65 TGTTTTTC
* * * * *
36808709 AAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAATT
*
36808774 TCTGTTCTTC
63 TCTGTTTTTC
36808784 AA
1 AA
36808786 TTTCTGTTCG
Statistics
Matches: 135, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
72 2 0.01
73 51 0.38
74 53 0.39
75 29 0.21
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTC
Found at i:36808687 original size:238 final size:239
Alignment explanation
Indices: 36807919--36809272 Score: 2403
Period size: 238 Copynumber: 5.7 Consensus size: 239
36807909 GTTCGTAAAA
* * *
36807919 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
* **
36807984 CTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
65 CTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
*
36808049 TTTTCAATTTCTGTTCTTCAATTTCTGTTCATAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
130 TTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
36808114 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
195 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
**
36808159 AAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
36808224 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
36808289 TTTCAATTTCTGTTCTTCAATTTCTGTTAGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
36808354 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
196 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* *
36808398 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
*
36808463 TGTTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* *
36808528 TTTCAATTTCTATTCTTCAATTTCTATTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
36808592 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
196 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
36808636 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
36808701 TGTTTGTCAAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
36808766 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGT--AAAAAAAAATCAACTCATATTGCGAGAGGTGA
36808831 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
194 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
*
36808877 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
*
36808942 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
36809007 TTTCAATTTCTGTTCTTCAATTTCTGTTCGT--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
*
36809070 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT-TGATTTTC
196 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* *
36809113 AAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
*
36809178 TCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGT
64 TCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
*
36809243 CTTTTTAATTTCTGCTT-TTCAATTTCTGTT
129 CTTTTCAATTTCTG-TTCTTCAATTTCTGTT
36809273 TTTTCAATTT
Statistics
Matches: 1074, Mismatches: 34, Indels: 14
0.96 0.03 0.01
Matches are distributed among these distances:
236 7 0.01
237 67 0.06
238 382 0.36
239 333 0.31
240 51 0.05
241 234 0.22
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (239 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
Found at i:36808741 original size:73 final size:73
Alignment explanation
Indices: 36808562--36808779 Score: 319
Period size: 73 Copynumber: 2.9 Consensus size: 73
36808552 TATTCGTAAA
* *
36808562 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
36808627 CTGTTTTTC
65 CTGTTTGTC
*
36808636 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
36808701 TGTTTGTC
66 TGTTTGTC
* * * * * *
36808709 AAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
36808774 TCTGTT
64 TCTGTT
36808780 CTTCAATTTC
Statistics
Matches: 131, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 53 0.40
74 53 0.40
75 25 0.19
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:36808786 original size:14 final size:14
Alignment explanation
Indices: 36808767--36808794 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36808757 CTGAGGTCTT
36808767 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36808781 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36808795 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:36808821 original size:167 final size:166
Alignment explanation
Indices: 36808636--36808945 Score: 505
Period size: 167 Copynumber: 1.9 Consensus size: 166
36808626 TCTGTTTTTC
* *
36808636 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * *
36808700 CTGTTTGTCAAAAATTAACTCATATTGTGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG--CACATGCTGAGGTA
*
36808765 TTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAA
129 ATTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAA
*
36808803 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * *
36808868 CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCACATGCTGAGGTAAT
36808933 TTCAATTTCTGTT
131 TTCAATTTCTGTT
36808946 TGTCAAAAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
166 26 0.20
167 53 0.40
168 53 0.40
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (166 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
CTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCACATGCTGAGGTAAT
TTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAA
Found at i:36808982 original size:73 final size:73
Alignment explanation
Indices: 36808803--36809020 Score: 337
Period size: 73 Copynumber: 2.9 Consensus size: 73
36808793 TCGTAAAAAA
* * *
36808803 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA-TTTTCAATTT
*
36808868 CTGTTTTTC
65 CTGTTTGTC
*
36808877 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTC
36808942 TGTTTGTC
66 TGTTTGTC
* * *
36808950 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGTATTTTCAATT
36809015 TCTGTT
64 TCTGTT
36809021 CTTCAATTTC
Statistics
Matches: 133, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
73 55 0.41
74 52 0.39
75 26 0.20
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:36809027 original size:14 final size:14
Alignment explanation
Indices: 36809008--36809035 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36808998 CTGAGGTCTT
36809008 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36809022 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
36809036 GTAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:36809062 original size:163 final size:162
Alignment explanation
Indices: 36808877--36809183 Score: 451
Period size: 163 Copynumber: 1.9 Consensus size: 162
36808867 TCTGTTTTTC
* * *
36808877 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* *
36808941 CTG-TTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGATCACATGCTGAG
66 -TGATTT-TCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGA-CAC--GCTGAG
**
36809003 GTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAA
126 GTAATTTCAATTTCTGTTCTTCAATTTCTGTTCGTAA
*
36809040 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
*
36809105 TGATTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
66 TGATTTTC-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
36809170 TTTCAATTTCTGTT
130 TTTCAATTTCTGTT
36809184 TGTCAAAAAT
Statistics
Matches: 130, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
163 78 0.60
164 11 0.08
165 38 0.29
166 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (162 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
TGATTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
TTCAATTTCTGTTCTTCAATTTCTGTTCGTAA
Found at i:36809148 original size:75 final size:73
Alignment explanation
Indices: 36809025--36809264 Score: 281
Period size: 75 Copynumber: 3.2 Consensus size: 73
36809015 TCTGTTCTTC
*
36809025 AATTTCTGTTCGT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTG
36809089 AGGTATTTTT
64 AGGTATTTTT
* *
36809099 AAATTT-TGATTTTCAAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCGGGACACGCT
1 -AATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCT
* *
36809163 GAGGTAATTTC
63 GAGGTATTTTT
* * *
36809174 AATTTCTGTTTGTC--AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGC
1 AATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGC
*
36809237 TGAGGTCTTTTT
62 TGAGGTATTTTT
36809249 AATTTCTGCTTTTCAA
1 AATTTCTG-TTTTCAA
36809265 TTTCTGTTTT
Statistics
Matches: 141, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
72 2 0.01
73 34 0.24
74 11 0.08
75 91 0.65
76 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
AATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAG
GTATTTTT
Found at i:36809266 original size:14 final size:15
Alignment explanation
Indices: 36809241--36809282 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
36809231 ACATGCTGAG
*
36809241 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
36809256 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
36809270 GTTTTTTCAATTT
1 GTCTTTTCAATTT
36809283 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:36809278 original size:15 final size:14
Alignment explanation
Indices: 36809244--36809293 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
36809234 TGCTGAGGTC
36809244 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
36809257 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
36809271 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
36809286 TTTTTCAA
1 TTTTTCAA
36809294 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:36810075 original size:30 final size:30
Alignment explanation
Indices: 36810039--36810213 Score: 296
Period size: 30 Copynumber: 5.8 Consensus size: 30
36810029 ATTTTTCTCA
*
36810039 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
36810069 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
36810099 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
36810129 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
36810159 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
36810189 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
36810214 CTTGTACCTA
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 135 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:36810104 original size:60 final size:60
Alignment explanation
Indices: 36810039--36810213 Score: 332
Period size: 60 Copynumber: 2.9 Consensus size: 60
36810029 ATTTTTCTCA
*
36810039 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
36810099 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
*
36810159 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
36810214 CTTGTACCTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 113 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:36810740 original size:23 final size:23
Alignment explanation
Indices: 36810703--36810834 Score: 65
Period size: 25 Copynumber: 5.5 Consensus size: 23
36810693 CCTTTTTTGT
36810703 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
36810726 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
36810748 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* * *
36810771 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
36810798 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
36810823 TATTATTTATAT
1 TATTATATATAT
36810835 ATATATATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 18 0.22
24 4 0.05
25 30 0.37
26 1 0.01
27 6 0.07
28 3 0.04
29 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:36810808 original size:25 final size:24
Alignment explanation
Indices: 36810780--36810850 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
36810770 ATATTACGTA
36810780 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATA-TATTTTATG
* * * *
36810805 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATA-TATTTTATG
*
36810830 TATATATA-TATATATATTTTA
1 TATATATATTTTATATATTTTA
36810851 CATGTTATCT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
23 6 0.16
24 4 0.11
25 27 0.73
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (24 bp):
TATATATATTTTATATATTTTATG
Found at i:36810869 original size:35 final size:35
Alignment explanation
Indices: 36810805--36810871 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
36810795 CTATTTTATG
*
36810805 TATATATCTTTAATATTATATTATTTATATATATA
1 TATATATCTTTAATATTATATTATGTATATATATA
* *
36810840 TATATAT-TTTACATGTTATCTTATGTATATAT
1 TATATATCTTTA-ATATTATATTATGTATATAT
36810872 CTTAACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 4 0.14
35 24 0.86
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (35 bp):
TATATATCTTTAATATTATATTATGTATATATATA
Found at i:36810888 original size:22 final size:24
Alignment explanation
Indices: 36810860--36810918 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
36810850 ACATGTTATC
36810860 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
36810882 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
36810907 TTATGTACATAT
1 TTATGTATATAT
36810919 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:36810908 original size:25 final size:25
Alignment explanation
Indices: 36810876--36810924 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
36810866 ATATATCTTA
**
36810876 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
36810901 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
36810925 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:36811114 original size:15 final size:15
Alignment explanation
Indices: 36811079--36811136 Score: 73
Period size: 16 Copynumber: 3.8 Consensus size: 15
36811069 TAATTATTAT
*
36811079 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
36811095 TATTTTAATATTTTA
1 TATTTTAATATTTTA
36811110 TATTTT-ATATTTATA
1 TATTTTAATATTT-TA
*
36811125 TATTTTATTATT
1 TATTTTAATATT
36811137 CACATCATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.16
15 15 0.39
16 17 0.45
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:36811136 original size:8 final size:7
Alignment explanation
Indices: 36811086--36811132 Score: 67
Period size: 8 Copynumber: 6.3 Consensus size: 7
36811076 TATTATTCTA
36811086 ATATTTT
1 ATATTTT
36811093 GATATTTT
1 -ATATTTT
36811101 AATATTTT
1 -ATATTTT
36811109 ATATTTT
1 ATATTTT
36811116 ATATTTAT
1 ATATTT-T
36811124 ATATTTT
1 ATATTTT
36811131 AT
1 AT
36811133 TATTCACATC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
7 16 0.43
8 21 0.57
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (7 bp):
ATATTTT
Found at i:36812352 original size:13 final size:13
Alignment explanation
Indices: 36812334--36812358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36812324 GAGCCATCAA
36812334 CAAAGGAACGAAG
1 CAAAGGAACGAAG
36812347 CAAAGGAACGAA
1 CAAAGGAACGAA
36812359 AGAGCCTCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.28, T:0.00
Consensus pattern (13 bp):
CAAAGGAACGAAG
Found at i:36819957 original size:41 final size:42
Alignment explanation
Indices: 36819863--36820032 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 42
36819853 AAATTGAATG
* * * *
36819863 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTG-TGCGAGTGACT
* * *
36819902 ATATCCGGGTTAAGACCCGAAGGCAATTGT-TGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGTGCGAGTGACT
* *
36819943 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGTGCGAGTGACT
* *
36819985 CTATCCGGGCTAAGACCCGAAGGC-ATT-TGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGTGCGA-GTGACT
36820025 ATATCCGG
1 ATATCCGG
36820033 TTATATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 15 0.14
40 33 0.30
41 26 0.24
42 33 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (42 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGTGCGAGTGACT
Found at i:36820000 original size:42 final size:40
Alignment explanation
Indices: 36819901--36820032 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 40
36819891 TGCTGGAAAT
* * *
36819901 TATATCCGGGTTAAGACCCGAAGGCAATTGTTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTTGCGAGTGAC
* *
36819942 TATATCCGGGCTAAGACCCGAAGGCATTCGTGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GT-TGCGAGTGAC
* *
36819984 TCTATCCGGGCTAAGACCCGAAGGCATT-TGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCATTGT-TGCGA-GTGAC
36820024 TATATCCGG
1 TATATCCGG
36820033 TTATATTCCG
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 20 0.25
41 26 0.32
42 33 0.41
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTTGCGAGTGAC
Found at i:36824196 original size:52 final size:52
Alignment explanation
Indices: 36824134--36824239 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
36824124 ATCAGTCGAC
36824134 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
1 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
*
36824186 TTTGAAAATGGTGCCTTATGAGGCATTATATGGACGTAAGTGCCAAACACCT
1 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
36824238 TT
1 TT
36824240 GTATTGGACA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (52 bp):
TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
Found at i:36827324 original size:28 final size:28
Alignment explanation
Indices: 36827292--36827360 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
36827282 GCGTAGATCA
36827292 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
36827320 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
36827348 CGATA-TACCCCTA
1 CGAAATTACCCCTA
36827361 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:36840083 original size:28 final size:28
Alignment explanation
Indices: 36840018--36840116 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
36840008 TCATGAATTG
* * *
36840018 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
36840047 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
36840075 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
36840103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36840117 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:36844211 original size:48 final size:48
Alignment explanation
Indices: 36844069--36844225 Score: 159
Period size: 48 Copynumber: 3.4 Consensus size: 48
36844059 TAGGGTTATG
* * *
36844069 TGTGATCCTATGTAAGACCATGTCCAGGACATGGCTTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
* ** *
36844117 TGTAATTTCGTGTAAGACCATAG-CTAGG-CTATCGGCA-T--C-TC-A-A
1 TGTGATCCCATGTAAGACCAT-GTCTAGGAC-AT-GGCATTGGCATCGATA
*
36844160 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
36844208 TGTGATCCCATGTAAGAC
1 TGTGATCCCATGTAAGAC
36844226 TATATCCGGG
Statistics
Matches: 86, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
42 5 0.06
43 25 0.29
44 2 0.02
45 3 0.03
46 3 0.03
47 2 0.02
48 42 0.49
49 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
Found at i:36847125 original size:40 final size:40
Alignment explanation
Indices: 36847068--36847332 Score: 284
Period size: 40 Copynumber: 6.7 Consensus size: 40
36847058 CTAACGGGGT
* * * *
36847068 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* **
36847108 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTTTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
36847148 TAAGTCCCAAAGGCATTTGTGCAAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * * *
36847188 TAAGTCCTGAAGGCTTTTGTGCGAGTTACAAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
36847228 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * * *
36847268 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
36847308 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
36847333 GGTTATATCC
Statistics
Matches: 188, Mismatches: 35, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
39 10 0.05
40 178 0.95
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:36847311 original size:80 final size:80
Alignment explanation
Indices: 36847068--36847357 Score: 329
Period size: 80 Copynumber: 3.6 Consensus size: 80
36847058 CTAACGGGGT
* *
36847068 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCAAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
36847133 TTACAAATTTTGGGC
66 TTACAAATTTCGGGC
* * * * *
36847148 TAAGTCCCAAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGTCCTGAAGGCTTTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCAAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
36847213 TTACAAATTTCGGGC
66 TTACAAATTTCGGGC
* * * *
36847228 TAAGCCCCGAAGGCATTTGTGCAAGTTATT-ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTA
1 TAAGTCCCGAAGGCATTTGTGCAAGTGATTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
* * * *
36847292 GTGAC-CATATCCGGAC
65 GTTACAAAT-TTCGGGC
* * * * *
36847308 TAAGACCCGAAGGC-CTTGTGCGAGTGGTT-ATATCC-GGCTAAATCCCGAAG
1 TAAGTCCCGAAGGCATTTGTGCAAGTGATTAAT-TCCGGGCTAAGTCCCGAAG
36847358 ATAATTGGGT
Statistics
Matches: 183, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
78 14 0.08
79 21 0.11
80 148 0.81
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACAAATTTCGGGC
Found at i:36847341 original size:39 final size:38
Alignment explanation
Indices: 36847225--36847357 Score: 133
Period size: 40 Copynumber: 3.4 Consensus size: 38
36847215 ACAAATTTCG
* *
36847225 GGCTAAGCCCCGAAGGCATTTGTGCAAGTTATTATATCC
1 GGCTAAGACCCGAAGGCA-TTGTGCAAGTGATTATATCC
* * **
36847264 GGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCC
1 -GGCTAAGACCCGAAGGCAT-TGTGCAAGTGATTATATCC
* * *
36847304 GGACTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC
1 GG-CTAAGACCCGAAGGCATTGTGCAAGTGATTATATCC
36847343 GGCTAA-ATCCCGAAG
1 GGCTAAGA-CCCGAAG
36847358 ATAATTGGGT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
37 1 0.01
38 11 0.14
39 20 0.25
40 47 0.59
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (38 bp):
GGCTAAGACCCGAAGGCATTGTGCAAGTGATTATATCC
Found at i:36850265 original size:40 final size:40
Alignment explanation
Indices: 36850210--36850291 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
36850200 ATACTTAGTA
36850210 AGTTCGGATAACTGGAAAATAAACTTACCGGTTAATTAGC
1 AGTTCGGATAACTGGAAAATAAACTTACCGGTTAATTAGC
36850250 AGTTCGGATAACTGGAAAATAAACTTACCGGTTAATTAGC
1 AGTTCGGATAACTGGAAAATAAACTTACCGGTTAATTAGC
36850290 AG
1 AG
36850292 ACAACCATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (40 bp):
AGTTCGGATAACTGGAAAATAAACTTACCGGTTAATTAGC
Found at i:36855605 original size:29 final size:30
Alignment explanation
Indices: 36855569--36855625 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
36855559 TTAATATGAA
*
36855569 CTTTTGCA-AAGTTACA-TTTTTCCCCTAAC
1 CTTTTGCATAA-TTACACTTTTGCCCCTAAC
36855598 CTTTTGCATAATTACACTTTTGCCCCTA
1 CTTTTGCATAATTACACTTTTGCCCCTA
36855626 GGCTCGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.23, C:0.28, G:0.07, T:0.42
Consensus pattern (30 bp):
CTTTTGCATAATTACACTTTTGCCCCTAAC
Found at i:36863076 original size:67 final size:64
Alignment explanation
Indices: 36862952--36863101 Score: 151
Period size: 67 Copynumber: 2.3 Consensus size: 64
36862942 ATACAGATAG
* * * * *
36862952 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGAACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATGCTAAGTGAACACCATGTGTACAAAAGAGCTAC--GACA-
36863017 TA
63 TA
* * * **
36863019 TGATGTAGCTAGGTCGCATGGGTGAT-CTATGTGTACACCATGTAG-ACAAAAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATGCTAAGTGAACACCATGT-GTACAAAAGAGCTACGACAT
36863082 A
64 A
36863083 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
36863102 TGTAGTACTA
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
63 18 0.25
64 3 0.04
65 2 0.03
67 27 0.38
68 21 0.30
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATGCTAAGTGAACACCATGTGTACAAAAGAGCTACGACATA
Found at i:36863182 original size:49 final size:49
Alignment explanation
Indices: 36863093--36863187 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
36863083 TATGTAGCTA
* ** *
36863093 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTACACGTACCAGATAATT
*
36863142 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATACGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTACACGTACCAGATA
36863188 GTTTGGCTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAAGCTACTACACGTACCAGATAATT
Found at i:36865052 original size:12 final size:13
Alignment explanation
Indices: 36865033--36865068 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
36865023 ATGTTTAAAA
36865033 ACTTTTATTTTTT
1 ACTTTTATTTTTT
*
36865046 A-TTTTATGTTTT
1 ACTTTTATTTTTT
36865058 ACTTTTATTTT
1 ACTTTTATTTT
36865069 ATTTTAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.75
Consensus pattern (13 bp):
ACTTTTATTTTTT
Found at i:36872900 original size:38 final size:38
Alignment explanation
Indices: 36872816--36872980 Score: 197
Period size: 38 Copynumber: 4.3 Consensus size: 38
36872806 AAACCCAAAC
* * *
36872816 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGAT
* *
36872856 AT-ATACCAGCACTAGGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* * *
36872893 ATAATACCAGCACGAAGCCTGCAGGATTTAACCGGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* * *
36872931 ATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
36872969 ATAATTCCAGCA
1 ATAATACCAGCA
36872981 TATAGCCTGC
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 9 0.08
38 78 0.72
39 20 0.18
40 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
Found at i:36883359 original size:55 final size:55
Alignment explanation
Indices: 36883264--36883379 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
36883254 TAGGCCCACA
* * ** ** *
36883264 CCCGTGTTAATTTAACAGGTTTGCCCAAGGTTGCTTGGCACGGGTGTGTCGCACG
1 CCCGTGTTAATTTAACAGGTTCGACCAAGGTTGCAAGGCACGGACGTGTAGCACG
* * *
36883319 CCCGTGTTAATTTGACAGGTTCGACCATGGGTT-CAAGGCACGGACGTGTAGCATG
1 CCCGTGTTAATTTAACAGGTTCGACCA-AGGTTGCAAGGCACGGACGTGTAGCACG
36883374 CCCGTG
1 CCCGTG
36883380 CTGTTTTGGC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 46 0.92
56 4 0.08
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (55 bp):
CCCGTGTTAATTTAACAGGTTCGACCAAGGTTGCAAGGCACGGACGTGTAGCACG
Found at i:36886315 original size:19 final size:19
Alignment explanation
Indices: 36886293--36886331 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36886283 ACCTGCCAAG
36886293 ATAAAGAAAAAGTA-AATTA
1 ATAAAGAAAAA-TAGAATTA
*
36886312 ATAAATAAAAATAGAATTA
1 ATAAAGAAAAATAGAATTA
36886331 A
1 A
36886332 ATTAAATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (19 bp):
ATAAAGAAAAATAGAATTA
Found at i:36887931 original size:48 final size:48
Alignment explanation
Indices: 36887796--36888016 Score: 220
Period size: 48 Copynumber: 4.7 Consensus size: 48
36887786 TGCGATCCTG
* * * * * **
36887796 TGTAAGACTATGCCTGGGACATGGCTTTGGCATCGATATGTAATTTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGATCCCA
* * * * *
36887844 TATAAGACCATAG-CTAGG-C-T---ATCGGCATCTATATGTGATCCCA
1 TGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATATGATCCCA
*
36887887 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTATGATCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGATCCCA
* *
36887935 TGTAAGACCTTGTCTGGGACATGGCATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGATCCCA
* * * *
36887983 TGTAAGACTATCTCTAGGATATGGCATTGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATC
36888017 CTACCATGTG
Statistics
Matches: 143, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.74
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGATCCCA
Found at i:36887941 original size:91 final size:94
Alignment explanation
Indices: 36887782--36888016 Score: 244
Period size: 91 Copynumber: 2.5 Consensus size: 94
36887772 GTTTATTAGT
* ** * * * **
36887782 TATATGCGATCCTGTGTAAGACTATGCCTGGGACATGGCTTTGGCATCGATATGTAATTTCATAT
1 TATATGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGATATATAATCCCATAT
36887847 AAGACCATAG-CTAGG-C-T-ATCGGCATC
66 AAGACC-TAGTCTAGGACATGATCGGCATC
* * * *
36887873 TATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTATGATCCCATGT
1 TATATGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGATATATAATCCCATAT
* * *
36887938 AAGACCTTGTCTGGGACATGGCATTGGCATC
66 AAGACCTAGTCTAGGACAT-G-ATCGGCATC
* * * *
36887969 GATATGTGATCCCATGTAAGACTATCTCTAGGATATGGCATTGGCATC
1 TATATGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATC
36888017 CTACCATGTG
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
90 2 0.02
91 63 0.53
92 1 0.01
93 1 0.01
96 51 0.43
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (94 bp):
TATATGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGATATATAATCCCATAT
AAGACCTAGTCTAGGACATGATCGGCATC
Found at i:36896945 original size:80 final size:80
Alignment explanation
Indices: 36896861--36897009 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
36896851 TATGGTAACC
* * * *
36896861 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
36896925 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
36896941 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
36897006 CCGG
66 CCGG
36897010 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:36896951 original size:40 final size:38
Alignment explanation
Indices: 36896902--36897009 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
36896892 ATCACGATTT
*
36896902 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
36896942 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
36896982 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
36897010 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:36899171 original size:46 final size:46
Alignment explanation
Indices: 36899104--36899325 Score: 292
Period size: 46 Copynumber: 4.8 Consensus size: 46
36899094 TGTAACCCGC
* *
36899104 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCACAT
36899150 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * * *
36899200 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
36899243 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
36899289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36899326 TGCTCAACCA
Statistics
Matches: 157, Mismatches: 10, Indels: 18
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 1 0.01
45 2 0.01
46 108 0.69
47 31 0.20
48 2 0.01
49 1 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:36899785 original size:30 final size:30
Alignment explanation
Indices: 36899751--36899810 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36899741 ATTTAATACT
36899751 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36899781 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36899811 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36903156 original size:40 final size:40
Alignment explanation
Indices: 36903111--36903278 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
36903101 CGGAATATAA
*
36903111 CCGGATATAATCACGT-GCACAAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36903151 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
36903191 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
36903231 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36903271 CCGGATAT
1 CCGGATAT
36903279 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36909377 original size:93 final size:93
Alignment explanation
Indices: 36909245--36909415 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
36909235 GCCCATAAGT
* *
36909245 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACATCCATAAGTGAACTAGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCACATCCATAAGTGAACTAGGACTCAACTCAA
36909310 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
36909338 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCACATCCATAAGTGAACTAGGACTCAACTCAA
36909403 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36909416 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCACATCCATAAGTGAACTAGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:36909412 original size:46 final size:46
Alignment explanation
Indices: 36909237--36909412 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
36909227 TGTAACTCGC
* * * *
36909237 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
36909283 CCATAAGTGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * * *
36909333 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
36909376 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36909413 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:36911687 original size:40 final size:40
Alignment explanation
Indices: 36911590--36911807 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
36911580 TAGATGATAA
*
36911590 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
36911631 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36911671 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36911711 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36911751 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36911790 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36911808 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 99 0.63
41 23 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36920618 original size:17 final size:17
Alignment explanation
Indices: 36920596--36920628 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36920586 AATTATTATT
36920596 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
36920613 AAATATAATTTAATAA
1 AAATATAATTTAATAA
36920629 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:36921052 original size:43 final size:43
Alignment explanation
Indices: 36921004--36921087 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
36920994 TACAAATACA
*
36921004 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATATCCAACT
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACT
*
36921047 TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAA
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAA
36921088 TCAATTCCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACT
Found at i:36921144 original size:33 final size:33
Alignment explanation
Indices: 36921107--36921169 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
36921097 GATTAAACCA
36921107 ACCAATTTGATCAAATCCAAACATCCATGATGG
1 ACCAATTTGATCAAATCCAAACATCCATGATGG
* *
36921140 ACCAATTTGATCAAGTTCAAACATCCATGA
1 ACCAATTTGATCAAATCCAAACATCCATGA
36921170 CGAAAACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (33 bp):
ACCAATTTGATCAAATCCAAACATCCATGATGG
Found at i:36924295 original size:72 final size:72
Alignment explanation
Indices: 36924178--36924340 Score: 272
Period size: 72 Copynumber: 2.3 Consensus size: 72
36924168 GTATAGAAGC
* *
36924178 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTTAGA
1 ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTCAGA
*
36924243 CGTGAGA
66 CATGAGA
* *
36924250 ATGAAAAAGATAGAGAAGTTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTCAGA
1 ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTCAGA
36924315 CATGAGA
66 CATGAGA
*
36924322 ATGAAAAAGAGGGAGAAGG
1 ATGAAAAAGAGAGAGAAGG
36924341 GTAAAGTTAA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 83 1.00
ACGTcount: A:0.50, C:0.03, G:0.33, T:0.13
Consensus pattern (72 bp):
ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTCAGA
CATGAGA
Found at i:36924834 original size:48 final size:48
Alignment explanation
Indices: 36924744--36924839 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
36924734 GGAGAAGTGC
** * ***
36924744 TTCTACATTCCAAACACACTGTATTGGGATTGCTTTGTGCTTTTGGGA
1 TTCTACATTCCAAACACACCCTATTAGGATTGCTTCAAGCTTTTGGGA
36924792 TTCTACATTCCAAACACACCCTATTAGGATTGCTTCAAGCTTTTGGGA
1 TTCTACATTCCAAACACACCCTATTAGGATTGCTTCAAGCTTTTGGGA
36924840 CTCAATAAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (48 bp):
TTCTACATTCCAAACACACCCTATTAGGATTGCTTCAAGCTTTTGGGA
Found at i:36928051 original size:16 final size:16
Alignment explanation
Indices: 36928030--36928065 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36928020 GTTTTATATG
*
36928030 TGAATTGATAATGAAA
1 TGAATTAATAATGAAA
*
36928046 TGAATTAATAATGATA
1 TGAATTAATAATGAAA
36928062 TGAA
1 TGAA
36928066 AATTGGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (16 bp):
TGAATTAATAATGAAA
Found at i:36928366 original size:17 final size:17
Alignment explanation
Indices: 36928331--36928371 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
36928321 TGCTTCTAAG
*
36928331 AAGCATTTTGCGACAAA
1 AAGCATTTTGAGACAAA
36928348 AAGCACTTTTGAGAC-AA
1 AAGCA-TTTTGAGACAAA
36928365 AAGCATT
1 AAGCATT
36928372 CCTAAACAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 12 0.55
18 8 0.36
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (17 bp):
AAGCATTTTGAGACAAA
Found at i:36931177 original size:93 final size:93
Alignment explanation
Indices: 36931065--36931236 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36931055 CGCCCATAAG
* *
36931065 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36931130 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36931158 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36931223 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36931237 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36931233 original size:46 final size:46
Alignment explanation
Indices: 36931058--36931233 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36931048 TGTAACCCGC
* * *
36931058 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36931104 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36931154 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36931197 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36931234 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36938755 original size:47 final size:49
Alignment explanation
Indices: 36938635--36938812 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 49
36938625 TGTAACCCGC
* * *
36938635 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
36938680 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
36938730 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
36938773 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
36938813 TCAACCATCC
Statistics
Matches: 111, Mismatches: 9, Indels: 22
0.78 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 36 0.32
46 29 0.26
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:36938800 original size:93 final size:92
Alignment explanation
Indices: 36938642--36938812 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
36938632 CGCCCATAAG
*
36938642 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36938707 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* *
36938734 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAC-GTCGCATCCATAAGTGAACTCGGACTCAACTCA
36938799 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
36938813 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 29 0.39
93 46 0.61
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36946328 original size:93 final size:93
Alignment explanation
Indices: 36946216--36946387 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36946206 CGCCCATAAG
* *
36946216 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36946281 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36946309 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36946374 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36946388 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36946384 original size:46 final size:46
Alignment explanation
Indices: 36946209--36946384 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36946199 TGTAACCCGC
* * *
36946209 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36946255 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36946305 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36946348 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36946385 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36949511 original size:29 final size:30
Alignment explanation
Indices: 36949478--36949547 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
36949468 AAATTAAAAT
*
36949478 TTCATGTATAAAATTGCAGA-AAATCAAAG
1 TTCATGTATAAAATTGCACATAAATCAAAG
* **
36949507 TTCATGTATACAATTGCACATTAAATCGTAG
1 TTCATGTATAAAATTGCACA-TAAATCAAAG
36949538 TTCATGTATA
1 TTCATGTATA
36949548 GTTTTGAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (30 bp):
TTCATGTATAAAATTGCACATAAATCAAAG
Found at i:36950583 original size:104 final size:104
Alignment explanation
Indices: 36950403--36950617 Score: 412
Period size: 104 Copynumber: 2.1 Consensus size: 104
36950393 GGTTCAAACC
36950403 AGAAATGAATTGCATTTAGAACCAAATCAACATAAATGAATAAAAATGATGAACTTAGAGAAATG
1 AGAAATGAATTGCATTTAGAACCAAATCAACATAAATGAATAAAAATGATGAACTTAGAGAAATG
*
36950468 AGTTGCATTCACAAATTAATGCGTTTTCTCATTGAGTAT
66 AGTTGCATTCACAAATTAATGCGTTTTCTCATTAAGTAT
*
36950507 AGAAATGAATTGCATTTAGAACCAAATCAACATAAATGAATAAAAATGATGAAGTTAGAGAAATG
1 AGAAATGAATTGCATTTAGAACCAAATCAACATAAATGAATAAAAATGATGAACTTAGAGAAATG
36950572 AGTTGCATTCACAAATTAATGCGTTTTCTCATTAAGTAT
66 AGTTGCATTCACAAATTAATGCGTTTTCTCATTAAGTAT
36950611 AGAAATG
1 AGAAATG
36950618 GCTTGAGACT
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 109 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (104 bp):
AGAAATGAATTGCATTTAGAACCAAATCAACATAAATGAATAAAAATGATGAACTTAGAGAAATG
AGTTGCATTCACAAATTAATGCGTTTTCTCATTAAGTAT
Found at i:36955528 original size:21 final size:21
Alignment explanation
Indices: 36955502--36955546 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
36955492 GGTGGCGACT
* *
36955502 GTGTTGTTGGTGCTTGTGGCG
1 GTGTTGCTGGTGCTGGTGGCG
*
36955523 GTGTTGCTGGTGCTGGTGGTG
1 GTGTTGCTGGTGCTGGTGGCG
36955544 GTG
1 GTG
36955547 GTCGGATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.09, G:0.51, T:0.40
Consensus pattern (21 bp):
GTGTTGCTGGTGCTGGTGGCG
Found at i:36956241 original size:2 final size:2
Alignment explanation
Indices: 36956234--36956268 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
36956224 GGGTCAGGCA
36956234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36956269 AAAATTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36958044 original size:2 final size:2
Alignment explanation
Indices: 36958037--36958064 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
36958027 TCAATCATAA
36958037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36958065 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36961984 original size:29 final size:29
Alignment explanation
Indices: 36961938--36961994 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
36961928 CACAAATCTA
36961938 GAATTCAGTCTCTATATTTTTATTTTCAT
1 GAATTCAGTCTCTATATTTTTATTTTCAT
* * * *
36961967 GAATTTAGTTTCTTTATTTTTTTTTTCA
1 GAATTCAGTCTCTATATTTTTATTTTCA
36961995 AAATTTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.11, G:0.07, T:0.61
Consensus pattern (29 bp):
GAATTCAGTCTCTATATTTTTATTTTCAT
Found at i:36963043 original size:32 final size:32
Alignment explanation
Indices: 36963001--36963064 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
36962991 ATATTGGAAA
*
36963001 TGAATTTGGACAA-ATGGTTATCTAGGTTCATT
1 TGAATGTGGACAACAT-GTTATCTAGGTTCATT
*
36963033 TGAATGTGGACAACATTTTATCTAGGTTCATT
1 TGAATGTGGACAACATGTTATCTAGGTTCATT
36963065 CTAGACATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 27 0.93
33 2 0.07
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (32 bp):
TGAATGTGGACAACATGTTATCTAGGTTCATT
Found at i:36965925 original size:21 final size:21
Alignment explanation
Indices: 36965900--36965939 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36965890 TTTTTTTAAA
*
36965900 TTAAAAAATAAATTAATTTTT
1 TTAAAAAATAAATAAATTTTT
*
36965921 TTAAAAAGTAAATAAATTT
1 TTAAAAAATAAATAAATTT
36965940 AAAAGTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TTAAAAAATAAATAAATTTTT
Found at i:36966045 original size:29 final size:29
Alignment explanation
Indices: 36966011--36966070 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
36966001 TTTAAAGTTA
*
36966011 TAAAAATTAAATTAAATTGTGTTTAATTTT
1 TAAAATTTAAATTAAATT-TGTTTAATTTT
* * *
36966041 TAAAATTTTAATTCAATTTTTTTAATTTT
1 TAAAATTTAAATTAAATTTGTTTAATTTT
36966070 T
1 T
36966071 TTAACTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (29 bp):
TAAAATTTAAATTAAATTTGTTTAATTTT
Found at i:36966124 original size:18 final size:20
Alignment explanation
Indices: 36966101--36966140 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
36966091 TATTTTTATA
36966101 TTTTTAAA-TAAAAA-TAAT
1 TTTTTAAACTAAAAATTAAT
36966119 TTTTTAAACTAAAAATTAAT
1 TTTTTAAACTAAAAATTAAT
36966139 TT
1 TT
36966141 CCAAATCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTTTAAACTAAAAATTAAT
Found at i:36969101 original size:40 final size:39
Alignment explanation
Indices: 36969037--36969224 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
36969027 GCTACTCGTT
* * * ** *
36969037 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
36969077 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
36969117 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
36969156 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
36969195 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
36969225 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:36969152 original size:39 final size:39
Alignment explanation
Indices: 36969073--36969225 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
36969063 TATGGTAACC
* *
36969073 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
36969113 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
36969152 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36969191 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
36969226 TCGAACATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:36969203 original size:78 final size:79
Alignment explanation
Indices: 36969042--36969224 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
36969032 TCGTTCAAAC
* * **
36969042 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
36969107 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
36969122 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
36969186 CAATTTGCACAATT
66 CAACTCGCACAATT
36969200 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
36969225 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:36978509 original size:40 final size:40
Alignment explanation
Indices: 36978443--36978593 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
36978433 AAATTGAATG
* * *
36978443 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36978482 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36978522 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
36978562 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
36978594 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36986516 original size:40 final size:40
Alignment explanation
Indices: 36986450--36986600 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
36986440 AAATTGAATG
* * *
36986450 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36986489 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36986529 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
36986569 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
36986601 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36989313 original size:10 final size:10
Alignment explanation
Indices: 36989298--36989332 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
36989288 AGTTTGAACC
36989298 TTAGGAATAG
1 TTAGGAATAG
*
36989308 TTAGG-ATAC
1 TTAGGAATAG
36989317 TTAGGAATAG
1 TTAGGAATAG
36989327 TTAGGA
1 TTAGGA
36989333 TACAAGTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.37, C:0.03, G:0.29, T:0.31
Consensus pattern (10 bp):
TTAGGAATAG
Done.