Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 139 of 444
Found at i:36989321 original size:19 final size:19
Alignment explanation
Indices: 36989297--36989335 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36989287 CAGTTTGAAC
36989297 CTTAGGAATAGTTAGGATA
1 CTTAGGAATAGTTAGGATA
36989316 CTTAGGAATAGTTAGGATA
1 CTTAGGAATAGTTAGGATA
36989335 C
1 C
36989336 AAGTGACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (19 bp):
CTTAGGAATAGTTAGGATA
Found at i:36989421 original size:45 final size:45
Alignment explanation
Indices: 36989369--36989454 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
36989359 TTGTGATTTG
** *
36989369 AACTCATTGAGTTGTGGTCTGTGTTCATGATATTTGTGACATCTA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCTA
*
36989414 AACTCATTGAGTTGTGGTCTAAGTTCATGATGTATGTGACA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
36989455 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCTA
Found at i:36993129 original size:28 final size:28
Alignment explanation
Indices: 36993064--36993162 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
36993054 CATGAGATTG
* * *
36993064 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
36993093 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
36993121 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
36993149 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36993163 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:36996231 original size:15 final size:15
Alignment explanation
Indices: 36996211--36996252 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
36996201 CTAAGGGAAG
36996211 TATGTGGGTGCCAGT
1 TATGTGGGTGCCAGT
36996226 TATGTGGGTGCCAGT
1 TATGTGGGTGCCAGT
*
36996241 TATGTGGATGCC
1 TATGTGGGTGCC
36996253 CGTAGTAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.33
Consensus pattern (15 bp):
TATGTGGGTGCCAGT
Found at i:37000869 original size:17 final size:17
Alignment explanation
Indices: 37000847--37000879 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37000837 TGCTCAAACA
37000847 GTCATACATCACATAGG
1 GTCATACATCACATAGG
37000864 GTCATACATCACATAG
1 GTCATACATCACATAG
37000880 AGTAAAACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (17 bp):
GTCATACATCACATAGG
Found at i:37000915 original size:27 final size:27
Alignment explanation
Indices: 37000883--37001112 Score: 266
Period size: 27 Copynumber: 8.6 Consensus size: 27
37000873 CACATAGAGT
* * *
37000883 AAAACAGTCAATTTACCACATAAAGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
*
37000910 AAAACAGTCATTTTACCTCATAAGGGA
1 AAAACAGTCATTTTACCTCATAAGGGC
*
37000937 AAAATC-GTCATTTTATCTCATAAGGGC
1 AAAA-CAGTCATTTTACCTCATAAGGGC
*
37000964 AAAA-AGTCATTTCACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* *
37000990 AAAACAATCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
37001017 AAAACAATCATTTTACCACATAAAGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
** * *
37001044 AAAACAGTCATTCCACCTCATAACGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
37001071 AAAACGGACATTTTACCCCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
*
37001098 AAAATAGTCATTTTA
1 AAAACAGTCATTTTA
37001113 TCAATCTCGG
Statistics
Matches: 172, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 23 0.13
27 148 0.86
28 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:37006234 original size:46 final size:46
Alignment explanation
Indices: 37006167--37006342 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
37006157 TGTAACCCGC
* *
37006167 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
37006213 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATACCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--A-C--GTTCGCAT
* *
37006263 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
37006306 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37006343 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:37006286 original size:93 final size:93
Alignment explanation
Indices: 37006174--37006343 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
37006164 CGCCCATAAG
* *
37006174 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37006239 ACGAGTTCGGATACCTAGTTACATCTCA
66 ACGAGTTCGGATACCTAGTTACATCTCA
*
37006267 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37006332 ACGAGTTCGGAT
66 ACGAGTTCGGAT
37006344 GCTCAACCAT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATACCTAGTTACATCTCA
Found at i:37008612 original size:18 final size:17
Alignment explanation
Indices: 37008582--37008615 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37008572 TTTTGGGCCG
*
37008582 TGTGGGCCGCACGGGCA
1 TGTGGGCCACACGGGCA
37008599 TGTGGGCCTACACGGGC
1 TGTGGGCC-ACACGGGC
37008616 TGACAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.29, G:0.44, T:0.15
Consensus pattern (17 bp):
TGTGGGCCACACGGGCA
Found at i:37010958 original size:40 final size:40
Alignment explanation
Indices: 37010869--37011087 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 40
37010859 TATTCGGATG
* * *
37010869 ATATCCGGGCTAAGTCCCGAAGGCA-TGGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
37010908 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
37010948 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
37010988 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGAC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * * *
37011027 -TATCCGGGGTAAGACCCGAAGGCATTTGGGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
37011066 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37011088 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
38 29 0.19
39 42 0.27
40 81 0.52
41 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:37011007 original size:80 final size:78
Alignment explanation
Indices: 37010870--37011087 Score: 298
Period size: 80 Copynumber: 2.8 Consensus size: 78
37010860 ATTCGGATGA
* *
37010870 TATCCGGGCTAAGTCCCGAAGGCA-TGGCGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCA
1 TATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCA
*
37010933 GTTGTGCTATTGAC
65 GTTGTGCTAGTGAC
*
37010947 TATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
1 TAT--CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
**
37011012 TTTTGTGCTAGTGAC
64 AGTTGTGCTAGTGAC
* * * *
37011027 TATCCGGGGTAAGACCCGAAGGCATTTGGGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 TATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
37011088 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
77 18 0.14
78 39 0.31
79 21 0.17
80 47 0.37
81 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (78 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAG
TTGTGCTAGTGAC
Found at i:37014475 original size:41 final size:41
Alignment explanation
Indices: 37014377--37014487 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
37014367 AATAATGATG
* *
37014377 AATTGCACATGCGTGCCTCTATTTGTACTTCAGTACCCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
* ** * *
37014418 AATTGAACATTGGTGCCCCTGTTTGTACTTCAGTACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
* *
37014459 ACTTGCGCATACGTG-CCCTATTTGTACTT
1 AATTGCACATACGTGCCCCTATTTGTACTT
37014488 GGGTTCTCTG
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 13 0.22
41 45 0.78
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
Found at i:37021703 original size:41 final size:41
Alignment explanation
Indices: 37021658--37021945 Score: 378
Period size: 41 Copynumber: 7.0 Consensus size: 41
37021648 AGAATAATGA
* * * *
37021658 TGAATTGCACATATGTGCCCCTGTTTATACTTCGGTACCCT
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
** *
37021699 TGAATTGCATGTATATGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
* ** * *
37021740 TGAATTACACATAGGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
* * *
37021781 AGAATTGCACATACATGCCCCTTTTTGTACTTCGGTACCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
* ** *
37021822 TGAATTGCACATATATGCCCCTCTTTGTTCTTCAATGCCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
* * *
37021863 TAAATTGCACATACATGCCCCTTTTTGTACTTCGGTACCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
37021904 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
1 TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
37021945 T
1 T
37021946 AGATGTACTT
Statistics
Matches: 212, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 212 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATATATGCCCCTCTTTGTACTTCGGTACCCC
Found at i:37034177 original size:14 final size:14
Alignment explanation
Indices: 37034141--37034177 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
37034131 TAAAAATTAT
37034141 TTTTTGTG--TTTA
1 TTTTTGTGAATTTA
37034153 TTTTCTGTGAATTTA
1 TTTT-TGTGAATTTA
37034168 TTTTTGTGAA
1 TTTTTGTGAA
37034178 ATTTTCGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 4 0.18
14 6 0.27
15 8 0.36
ACGTcount: A:0.16, C:0.03, G:0.16, T:0.65
Consensus pattern (14 bp):
TTTTTGTGAATTTA
Found at i:37034181 original size:15 final size:15
Alignment explanation
Indices: 37034137--37034177 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
37034127 TATTTAAAAA
*
37034137 TTATTTTTTGTG--T
1 TTATTTTCTGTGAAT
37034150 TTATTTTCTGTGAAT
1 TTATTTTCTGTGAAT
37034165 TTATTTT-TGTGAA
1 TTATTTTCTGTGAA
37034178 ATTTTCGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.66
Consensus pattern (15 bp):
TTATTTTCTGTGAAT
Found at i:37036275 original size:26 final size:27
Alignment explanation
Indices: 37036246--37036320 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 27
37036236 CAATTTAACC
* * *
37036246 CTAGGGGTATTTCGGTAATTTTGCA-A
1 CTAGGGGTATTACAGTAATTTTCCATA
*
37036272 CTAGGGGTATAACAGTAATTTTCCATA
1 CTAGGGGTATTACAGTAATTTTCCATA
*
37036299 CATAGGGGTATTATAGTAATTT
1 C-TAGGGGTATTACAGTAATTT
37036321 AGCTGTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.51
27 2 0.05
28 18 0.44
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
CTAGGGGTATTACAGTAATTTTCCATA
Found at i:37037796 original size:26 final size:26
Alignment explanation
Indices: 37037765--37037872 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
37037755 TGAAATGCCC
*
37037765 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
37037791 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37037817 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37037843 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37037869 ATCA
1 ATCA
37037873 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37046843 original size:2 final size:2
Alignment explanation
Indices: 37046831--37046866 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
37046821 ATGTAATAAA
37046831 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37046867 GTATGGTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:37046907 original size:13 final size:12
Alignment explanation
Indices: 37046826--37046925 Score: 51
Period size: 13 Copynumber: 7.9 Consensus size: 12
37046816 TAATTATGTA
37046826 ATAAAATATAAT
1 ATAAAATATAAT
*
37046838 AT-ATATAT-AT
1 ATAAAATATAAT
*
37046848 ATATATATATATAT
1 ATA-AAATATA-AT
* * **
37046862 ATATAGTATGGT
1 ATAAAATATAAT
*
37046874 ATTAAAACATAGAT
1 A-TAAAATATA-AT
37046888 ATAAAAATATAAT
1 AT-AAAATATAAT
37046901 ACTAAAATATACAT
1 A-TAAAATATA-AT
*
37046915 ATAATATATAA
1 ATAAAATATAA
37046926 AGGTATATAT
Statistics
Matches: 66, Mismatches: 13, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
10 4 0.06
11 5 0.08
12 11 0.17
13 28 0.42
14 18 0.27
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.37
Consensus pattern (12 bp):
ATAAAATATAAT
Found at i:37047023 original size:27 final size:27
Alignment explanation
Indices: 37046968--37047024 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
37046958 GTGCAAGATA
* * * **
37046968 TATATATATATAATATGATGTTACGAG
1 TATACATATAAAATATAATGTTAAAAG
37046995 TATACATATAAAATATAATGTTAAAAG
1 TATACATATAAAATATAATGTTAAAAG
37047022 TAT
1 TAT
37047025 GTATGCATAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.39
Consensus pattern (27 bp):
TATACATATAAAATATAATGTTAAAAG
Found at i:37047297 original size:19 final size:20
Alignment explanation
Indices: 37047273--37047312 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
37047263 TAACGATATT
37047273 AAAATACA--ATATAATATAA
1 AAAATACATCATAT-ATATAA
37047292 AAAATACATCATATATATAA
1 AAAATACATCATATATATAA
37047312 A
1 A
37047313 TCTATGTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAATACATCATATATATAA
Found at i:37047525 original size:31 final size:32
Alignment explanation
Indices: 37047468--37047527 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
37047458 ATAATAATAA
*
37047468 ATATAACAACAATATTGAAAATACATATATAT
1 ATATAACAACAATATTGAAAAGACATATATAT
* *
37047500 ATATAAC-ATAATATTTAAAAGACATATA
1 ATATAACAACAATATTGAAAAGACATATA
37047528 ATAAATACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (32 bp):
ATATAACAACAATATTGAAAAGACATATATAT
Found at i:37049006 original size:44 final size:44
Alignment explanation
Indices: 37048921--37049026 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
37048911 GATATATGTC
* * *
37048921 TTGTAGCTTTAATCTACTTCAATGTAACTTCAAATATATGAGAT
1 TTGTAGCTTTAATCTGCTTCAATGCAACTTCAAATAGATGAGAT
* * * *
37048965 TTGTAGCTTTGATCTGCTTCCATGCAGCTTCAGAA-AGATGAGGT
1 TTGTAGCTTTAATCTGCTTCAATGCAACTTCA-AATAGATGAGAT
**
37049009 TTACAGCTTTAATCTGCT
1 TTGTAGCTTTAATCTGCT
37049027 CTTCTATCGC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 49 0.96
45 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (44 bp):
TTGTAGCTTTAATCTGCTTCAATGCAACTTCAAATAGATGAGAT
Found at i:37049348 original size:55 final size:55
Alignment explanation
Indices: 37049231--37049437 Score: 285
Period size: 55 Copynumber: 3.8 Consensus size: 55
37049221 GTGATCTTGA
* * * * *
37049231 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGATATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
* * *
37049285 GCTCAACTCACATCTTGCAATATGAGTTGACTTTTTGAAAAACAAAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
*
37049340 GCTCAACTCA-TCTCTTGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACT-TCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
* *
37049395 GTTCAACTCACTTCTCGTAATATGAGTTGA-TTTTTGAAAAACA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACA
37049438 TAAGTTGAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
54 44 0.32
55 92 0.67
56 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (55 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
Found at i:37049433 original size:109 final size:109
Alignment explanation
Indices: 37049231--37049437 Score: 308
Period size: 109 Copynumber: 1.9 Consensus size: 109
37049221 GTGATCTTGA
* * *
37049231 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAATAGATATTAAAAGGCTCAACTCAC
1 GCTCAACTCATCTCTCGCAATATGAATTGACTCTTTAAAAACAGAAATTAAAAGGCTCAACTCAC
*
37049296 ATCTTGCAATATGAGTTGACTTTTTGAAAAACAAAAATTAAAAG
66 ATCTCGCAATATGAGTTGACTTTTTGAAAAACAAAAATTAAAAG
* * * *
37049340 GCTCAACTCATCTCTTGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAGGTTCAACTCA
1 GCTCAACTCATCTCTCGCAATATGAATTGACTCTTT-AAAAACAGAAATTAAAAGGCTCAACTCA
* *
37049405 CTTCTCGTAATATGAGTTGA-TTTTTGAAAAACA
65 CATCTCGCAATATGAGTTGACTTTTTGAAAAACA
37049438 TAAGTTGAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 45 0.52
110 42 0.48
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (109 bp):
GCTCAACTCATCTCTCGCAATATGAATTGACTCTTTAAAAACAGAAATTAAAAGGCTCAACTCAC
ATCTCGCAATATGAGTTGACTTTTTGAAAAACAAAAATTAAAAG
Found at i:37049542 original size:86 final size:85
Alignment explanation
Indices: 37049397--37049627 Score: 324
Period size: 86 Copynumber: 2.7 Consensus size: 85
37049387 ATTAAAAGGT
* * * * *
37049397 TCAACTCACTTCTCGTAATATGAGTTGATTTTTGAAAAACATAAGTTGAAAACAGAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAACAGAAATTGAAAA
*
37049461 TTACCTCAGCGTGCCCCGAGGC
65 -TACCTCAGCGTGCCACGAGGC
* *
37049483 TCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAAATAGAAATTAAAGACAAAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAA-ACAGAAATTGAAAA
*
37049548 TACCTCAGCGTGCCATGAGGC
65 TACCTCAGCGTGCCACGAGGC
37049569 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAT-G-AATTAAAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAGAAATTAAAACAGAAATTG
37049628 GAAGAACAGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
84 9 0.07
85 10 0.08
86 106 0.81
87 6 0.05
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAACAGAAATTGAAAAT
ACCTCAGCGTGCCACGAGGC
Found at i:37049763 original size:79 final size:78
Alignment explanation
Indices: 37049632--37049950 Score: 315
Period size: 79 Copynumber: 4.0 Consensus size: 78
37049622 AAATTGGAAG
*
37049632 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
37049697 TTTTGAAAAGCAGA
66 TTTTGAAAAG-AGA
37049711 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
37049776 TCTTTTGAAACATAAATTGAAA
65 T-TTTTG----A-AAA--GAGA
* * * ** *
37049798 GAACAGAAATTGGAAA-TACCTCAGTATGTGAACC-GAGGTTCAACTCATATCTCGCAATGTGAG
1 -AACAGAAATT-GAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** *
37049861 TTAATTTTT---TTGAAA
61 TTGATTTTTGAAAAGAGA
* * * **
37049876 AACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCATAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
37049941 TTTTGAAAAG
66 TTTTGAAAAG
37049951 TATAAATTAA
Statistics
Matches: 198, Mismatches: 23, Indels: 39
0.76 0.09 0.15
Matches are distributed among these distances:
74 2 0.01
75 34 0.17
76 3 0.02
77 18 0.09
78 5 0.03
79 63 0.32
80 1 0.01
81 5 0.03
85 1 0.01
86 3 0.02
87 2 0.01
88 23 0.12
89 5 0.03
90 31 0.16
91 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (78 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGAGA
Found at i:37062812 original size:22 final size:22
Alignment explanation
Indices: 37062787--37062830 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
37062777 GCACTTGATC
*
37062787 TTGCTACAACCTTTTGTTTCTT
1 TTGCTACAACATTTTGTTTCTT
37062809 TTGCTACAACATTTTGTTTCTT
1 TTGCTACAACATTTTGTTTCTT
37062831 ACTTCGCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.20, G:0.09, T:0.55
Consensus pattern (22 bp):
TTGCTACAACATTTTGTTTCTT
Found at i:37063472 original size:40 final size:39
Alignment explanation
Indices: 37063287--37063472 Score: 122
Period size: 40 Copynumber: 4.6 Consensus size: 39
37063277 GATAGGACAC
* * * * *
37063287 TAGCGACGTTTTTCTAAAAGCGCCGCTATAGATCGAGCAT
1 TAGCGGCGTTTTT-TAAAAACGCCGCTAAAGGTTGAGCAT
* * * ** * *
37063327 TAGCAGCGTTTTTATAAAAAACGCCGC-AACTGATCAACCTT
1 TAGCGGCGTTTTT-T-AAAAACGCCGCTAA-AGGTTGAGCAT
** * *
37063368 TAGCGGCGTTTTCAAAAAACGCCACTAAAGGTTGAGTAT
1 TAGCGGCGTTTTTTAAAAACGCCGCTAAAGGTTGAGCAT
* * * *
37063407 TAGCGGTGTTTTATAACAAACGCCGCTATAGGTTTAGCAT
1 TAGCGGCGTTTTTTAA-AAACGCCGCTAAAGGTTGAGCAT
*
37063447 TAGCGGCGTTTTTTGAAAAATGCCGC
1 TAGCGGCGTTTTTT-AAAAACGCCGC
37063473 AAAAAAACAG
Statistics
Matches: 111, Mismatches: 30, Indels: 10
0.74 0.20 0.07
Matches are distributed among these distances:
39 27 0.24
40 54 0.49
41 30 0.27
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (39 bp):
TAGCGGCGTTTTTTAAAAACGCCGCTAAAGGTTGAGCAT
Found at i:37063641 original size:28 final size:29
Alignment explanation
Indices: 37063596--37063650 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
37063586 CAAAAAGTAT
*
37063596 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
37063624 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
37063651 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:37064024 original size:28 final size:28
Alignment explanation
Indices: 37063993--37064058 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
37063983 GAGTTGTGGT
*
37063993 TTAAAGTTTAGGGATTAGTGGGTAAAGG
1 TTAAAGGTTAGGGATTAGTGGGTAAAGG
* *
37064021 TTAAGGGTTATGGATTAGTGGGTAAAGG
1 TTAAAGGTTAGGGATTAGTGGGTAAAGG
*
37064049 TTAAGGGTTA
1 TTAAAGGTTA
37064059 TAGATTATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (28 bp):
TTAAAGGTTAGGGATTAGTGGGTAAAGG
Found at i:37064059 original size:28 final size:27
Alignment explanation
Indices: 37064004--37064099 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 27
37063994 TAAAGTTTAG
37064004 GGATTAGTGGGTAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTAAAGGTTAAGGGTTAT
37064032 GGATTAGTGGGTAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTAAAGGTTAAGGGTTAT
* * *
37064060 AGATTATGGGTTTAAGGATTAAGGGTCAT
1 GGATTATGGG-TAAAGG-TTAAGGGTTAT
37064089 GGATTATGGGT
1 GGATTATGGGT
37064100 TTAATGGTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 4 0.06
28 39 0.63
29 19 0.31
ACGTcount: A:0.28, C:0.01, G:0.38, T:0.33
Consensus pattern (27 bp):
GGATTATGGGTAAAGGTTAAGGGTTAT
Found at i:37064094 original size:14 final size:14
Alignment explanation
Indices: 37064021--37064100 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
37064011 TGGGTAAAGG
37064021 TTAAGGGTTATGGA
1 TTAAGGGTTATGGA
* * *
37064035 TTAGTGGGTAAAGG-
1 TTA-AGGGTTATGGA
*
37064049 TTAAGGGTTATAGA
1 TTAAGGGTTATGGA
* *
37064063 TTATGGGTTTAAGGA
1 TTAAGGG-TTATGGA
*
37064078 TTAAGGGTCATGGA
1 TTAAGGGTTATGGA
*
37064092 TTATGGGTT
1 TTAAGGGTT
37064101 TAATGGTTAA
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
13 6 0.12
14 24 0.50
15 18 0.38
ACGTcount: A:0.28, C:0.01, G:0.35, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTATGGA
Found at i:37064110 original size:29 final size:28
Alignment explanation
Indices: 37064004--37064110 Score: 128
Period size: 28 Copynumber: 3.8 Consensus size: 28
37063994 TAAAGTTTAG
*
37064004 GGATTAGTGGG-TAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTTTAAGGTTAAGGGTTAT
*
37064032 GGATTAGTGGG-TAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTTTAAGGTTAAGGGTTAT
* *
37064060 AGATTATGGGTTTAAGGATTAAGGGTCAT
1 GGATTATGGGTTTAAGG-TTAAGGGTTAT
37064089 GGATTATGGGTTTAATGGTTAA
1 GGATTATGGGTTTAA-GGTTAA
37064111 AGGGATAGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
27 4 0.06
28 38 0.53
29 28 0.39
30 2 0.03
ACGTcount: A:0.29, C:0.01, G:0.36, T:0.35
Consensus pattern (28 bp):
GGATTATGGGTTTAAGGTTAAGGGTTAT
Found at i:37064180 original size:7 final size:7
Alignment explanation
Indices: 37064170--37064273 Score: 50
Period size: 7 Copynumber: 14.6 Consensus size: 7
37064160 TGGGAAAGGA
37064170 GTTTATG
1 GTTTATG
37064177 GTTTATG
1 GTTTATG
*
37064184 AGTTAATG
1 -GTTTATG
* *
37064192 TTTTAAG
1 GTTTATG
37064199 GTTTA-G
1 GTTTATG
37064205 AGATTT-TG
1 -G-TTTATG
37064213 GTTTATG
1 GTTTATG
*
37064220 GTTTAAG
1 GTTTATG
* *
37064227 GGTTAGG
1 GTTTATG
*
37064234 GTTTAAG
1 GTTTATG
*
37064241 GTTTAGG
1 GTTTATG
*
37064248 GGTTAGTG
1 GTTTA-TG
* *
37064256 GATTAGG
1 GTTTATG
*
37064263 GTTTAGG
1 GTTTATG
37064270 GTTT
1 GTTT
37064274 CATGATTTAG
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
6 4 0.05
7 56 0.75
8 15 0.20
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (7 bp):
GTTTATG
Found at i:37064222 original size:21 final size:22
Alignment explanation
Indices: 37064170--37064224 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
37064160 TGGGAAAGGA
37064170 GTTTATGGTTTATGAGTTAATG
1 GTTTATGGTTTATGAGTTAATG
* * *
37064192 TTTTAAGGTTTA-GAGATT-TTG
1 GTTTATGGTTTATGAG-TTAATG
37064213 GTTTATGGTTTA
1 GTTTATGGTTTA
37064225 AGGGTTAGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (22 bp):
GTTTATGGTTTATGAGTTAATG
Found at i:37064236 original size:21 final size:22
Alignment explanation
Indices: 37064211--37064272 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
37064201 TTAGAGATTT
*
37064211 TGGTTTATGGTTTAAGGGTTAG
1 TGGTTTAAGGTTTAAGGGTTAG
*
37064233 -GGTTTAAGGTTTAGGGGTTAG
1 TGGTTTAAGGTTTAAGGGTTAG
* *
37064254 TGGATTAGGGTTT-AGGGTT
1 TGGTTTAAGGTTTAAGGGTT
37064273 TCATGATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 24 0.71
22 10 0.29
ACGTcount: A:0.18, C:0.00, G:0.40, T:0.42
Consensus pattern (22 bp):
TGGTTTAAGGTTTAAGGGTTAG
Found at i:37064604 original size:26 final size:27
Alignment explanation
Indices: 37064531--37064605 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
37064521 AATAATTTAA
37064531 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTAAAGATTTCAAATTTTAGAAT
* *
37064557 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTAAAGATTTCAAATTTTAGAAT
*
37064583 AATTTTAAATATTTCAAATTTTA
1 AATTTTAAAGATTTCAAATTTTA
37064606 TCTAATTCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 39 0.91
27 4 0.09
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTAAAGATTTCAAATTTTAGAAT
Found at i:37064750 original size:18 final size:17
Alignment explanation
Indices: 37064719--37064753 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37064709 TAGTTGATTG
*
37064719 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
37064736 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
37064754 AATAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:37065293 original size:14 final size:14
Alignment explanation
Indices: 37065259--37065297 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
37065249 ACCTTAAGTG
37065259 TTTTTCCCCTAAAA
1 TTTTTCCCCTAAAA
*
37065273 -CTTTCCCCTAAAA
1 TTTTTCCCCTAAAA
37065286 TTTTTCCCCTAA
1 TTTTTCCCCTAA
37065298 CCCTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTTTCCCCTAAAA
Found at i:37065394 original size:27 final size:28
Alignment explanation
Indices: 37065349--37065404 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
37065339 TCGCCGGACC
* *
37065349 CGACCATCTGTTGTATCACCGTCG-ACT
1 CGACCATCTGCTGCATCACCGTCGCACT
* *
37065376 CGACCATCTGCTGCGTCACCTTCGCACT
1 CGACCATCTGCTGCATCACCGTCGCACT
37065404 C
1 C
37065405 CTCTTTCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.27
Consensus pattern (28 bp):
CGACCATCTGCTGCATCACCGTCGCACT
Found at i:37067690 original size:23 final size:23
Alignment explanation
Indices: 37067660--37067709 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
37067650 AACATTAATC
37067660 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
37067683 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
37067706 AAAT
1 AAAT
37067710 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:37068763 original size:242 final size:241
Alignment explanation
Indices: 37067842--37068811 Score: 1796
Period size: 241 Copynumber: 4.0 Consensus size: 241
37067832 ATGAATTAAT
* *
37067842 TTTATTACCATGTAGCTTGCTTGTCTATTAAAATTACAATAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
37067907 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
* * *
37067972 CTGTAAGATACAATGGATCCTCCCTAGGTGTAACAACGACACGTATGATGAATCTTAAAATATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
37068037 AAAAAGACTTAAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
37068083 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
37068148 ATTTTAAATATTTTAAAGGTTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
37068213 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATTATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
37068278 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
37068324 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTTTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
37068389 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
37068454 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
37068519 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
37068565 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
37068630 ATTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTAGAAACCTGACGGGTTGCCTTATATCGA
66 A-TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGA
* *
37068695 ACTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTCAAAAAATT
130 GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
37068760 CAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
195 CAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
37068807 TTTAT
1 TTTAT
37068812 ATAACCTTAA
Statistics
Matches: 708, Mismatches: 20, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
241 533 0.75
242 175 0.25
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:37069271 original size:9 final size:9
Alignment explanation
Indices: 37069248--37069375 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
37069238 ATTGATCTTT
*
37069248 ACTTAAATA
1 ACTTACATA
*
37069257 AATTACATA
1 ACTTACATA
37069266 ACTTACATA
1 ACTTACATA
** *
37069275 ACAAATATA
1 ACTTACATA
37069284 ACTTACATA
1 ACTTACATA
*
37069293 ATTTACATAACA
1 ACTTACAT---A
37069305 ACTTACATA
1 ACTTACATA
*
37069314 ACTCACATA
1 ACTTACATA
37069323 ACTTACATA
1 ACTTACATA
*
37069332 ATTTACATA
1 ACTTACATA
*
37069341 ACTCACATA
1 ACTTACATA
*
37069350 ACGTACATAACA
1 ACTTACAT---A
37069362 ACTTACATA
1 ACTTACATA
37069371 ACTTA
1 ACTTA
37069376 ACTAATACAT
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
9 78 0.83
12 16 0.17
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.30
Consensus pattern (9 bp):
ACTTACATA
Found at i:37069322 original size:57 final size:57
Alignment explanation
Indices: 37069261--37069373 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
37069251 TAAATAAATT
* * **
37069261 ACATAACTTACATAACAAATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACAAACATAACTCACATAACGTACATAACAACTTACATAACTC
***
37069318 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACAAACATAACTCACATAACGTACATAACAACTTACATAACT
37069374 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.48, C:0.22, G:0.01, T:0.29
Consensus pattern (57 bp):
ACATAACTTACATAACAAACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:37069324 original size:39 final size:39
Alignment explanation
Indices: 37069265--37069342 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
37069255 TAAATTACAT
*
37069265 AACTTACATAACAAATATAACTTACATAATTTACATAAC
1 AACTTACATAACAAACATAACTTACATAATTTACATAAC
**
37069304 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACAAACATAACTTACATAATTTACATAAC
37069343 TCACATAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (39 bp):
AACTTACATAACAAACATAACTTACATAATTTACATAAC
Found at i:37074951 original size:21 final size:21
Alignment explanation
Indices: 37074925--37074970 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
37074915 AACTTAGAGT
* * *
37074925 GGAGGCAGCAGCGCGGGAGGC
1 GGAGGCAACAACGAGGGAGGC
37074946 GGAGGCAACAACGAGGGAGGC
1 GGAGGCAACAACGAGGGAGGC
37074967 GGAG
1 GGAG
37074971 CAGAACAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GGAGGCAACAACGAGGGAGGC
Found at i:37079345 original size:34 final size:34
Alignment explanation
Indices: 37079302--37079369 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
37079292 TTAGTTAGTA
37079302 AAATGTATGCCGTTCATGTGTGGTATTAAACATG
1 AAATGTATGCCGTTCATGTGTGGTATTAAACATG
37079336 AAATGTATGCCGTTCATGTGTGGTATTAAACATG
1 AAATGTATGCCGTTCATGTGTGGTATTAAACATG
37079370 TAATTGGCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (34 bp):
AAATGTATGCCGTTCATGTGTGGTATTAAACATG
Found at i:37080017 original size:40 final size:40
Alignment explanation
Indices: 37079921--37080139 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
37079911 GGAATGAAAT
* * * *
37079921 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
37079962 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
37080002 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
37080042 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
37080082 CCGGGCTAATTCCCAAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
37080122 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
37080140 ACAATCGAGC
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
40 130 0.84
41 25 0.16
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:37080135 original size:120 final size:121
Alignment explanation
Indices: 37079921--37080139 Score: 307
Period size: 120 Copynumber: 1.8 Consensus size: 121
37079911 GGAATGAAAT
** * *
37079921 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCAATT
* *
37079986 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
* * *
37080042 CCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCAAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCAAAGGCAAT
* * *
37080105 TGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
37080140 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 1 0.01
120 59 0.69
121 25 0.29
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
Found at i:37080164 original size:80 final size:80
Alignment explanation
Indices: 37079917--37080165 Score: 203
Period size: 80 Copynumber: 3.1 Consensus size: 80
37079907 TATTGGAATG
* ** * * * * * *
37079917 AAATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGG
1 AAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAA-TCACCAAAACCGGGCT-AAGTCCCGAAGA
* * * *
37079981 CATTTGTGCGAGTTACC
64 CAATCGAGCGAGTTACT
* * * * * * *
37079998 AAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAACCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACA
* *
37080063 ATTGTGCGAGTTACT
66 ATCGAGCGAGTTACT
* * * * *
37080078 AAATCCGGGCTAATTCCCAAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGACA
1 AAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACA
* *
37080143 ATCGAGCTAGTTGCT
66 ATCGAGCGAGTTACT
*
37080158 ATATCCGG
1 AAATCCGG
37080166 TTAAATCTGA
Statistics
Matches: 139, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 108 0.78
81 31 0.22
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (80 bp):
AAATCCGGGCTAAGTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACA
ATCGAGCGAGTTACT
Found at i:37082152 original size:4 final size:4
Alignment explanation
Indices: 37082126--37082175 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
37082116 TGATGGCCGA
* * * *
37082126 ATAT GTAT ATCT ATCT ATCT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
37082174 AT
1 AT
37082176 CAACTATACT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:37082154 original size:6 final size:6
Alignment explanation
Indices: 37082126--37082175 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
37082116 TGATGGCCGA
* * * *
37082126 ATATGT ATATCT ATCTAT CTATAT ATATAT ATATAT ATATAT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
37082174 AT
1 AT
37082176 CAACTATACT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (6 bp):
ATATAT
Found at i:37092524 original size:40 final size:40
Alignment explanation
Indices: 37092428--37092646 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
37092418 CGAATGATGT
* * * *
37092428 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
37092469 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
37092509 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
37092549 CCGGGTTAAGTCCCAAAGGCATTTGTGCGAGGTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
37092589 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
37092629 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
37092647 ACAATCGAGC
Statistics
Matches: 153, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
40 128 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:37092642 original size:120 final size:121
Alignment explanation
Indices: 37092428--37092646 Score: 316
Period size: 120 Copynumber: 1.8 Consensus size: 121
37092418 CGAATGATGT
* * * *
37092428 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
37092493 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
* *
37092549 CCGGGTTAAGTCCCAAAGGCATTTGTGCGAGGT-ACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
37092612 TGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
37092647 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
119 1 0.01
120 57 0.66
121 28 0.33
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAA
Found at i:37094654 original size:2 final size:2
Alignment explanation
Indices: 37094632--37094675 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
37094622 TGATGGCCGA
* * *
37094632 AT AT GT AT AT CT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37094674 AT
1 AT
37094676 CAACTATACT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37096990 original size:2 final size:2
Alignment explanation
Indices: 37096985--37097039 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
37096975 AACTAATGGC
* * *
37096985 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
37097024 AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
37097040 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:37097017 original size:22 final size:23
Alignment explanation
Indices: 37096985--37097036 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
37096975 AACTAATGGC
*
37096985 ATATATACATAATATATATATAT
1 ATATACACATAATATATATATAT
37097008 A-ATACACATAATATATATATAT
1 ATATACACATAATATATATATAT
37097030 ATATACA
1 ATATACA
37097037 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATACACATAATATATATATAT
Found at i:37097574 original size:11 final size:12
Alignment explanation
Indices: 37097558--37097594 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
37097548 AGAAAAAAAA
37097558 GGAAGAGAG-AG
1 GGAAGAGAGAAG
37097569 GGAAGAGAGAAG
1 GGAAGAGAGAAG
37097581 GG-AGAGAGAAG
1 GGAAGAGAGAAG
37097592 GGA
1 GGA
37097595 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:37097595 original size:11 final size:11
Alignment explanation
Indices: 37097556--37097605 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
37097546 AAAGAAAAAA
*
37097556 AAGGAAGAGAG
1 AAGGGAGAGAG
37097567 -AGGGAAGAGAG
1 AAGGG-AGAGAG
37097578 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
37097589 AAGGGAGGGGG
1 AAGGGAGAGAG
37097600 AAGGGA
1 AAGGGA
37097606 AATCGGTCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:37097901 original size:14 final size:15
Alignment explanation
Indices: 37097866--37097901 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
37097856 TTTTTTGGTT
37097866 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
37097881 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
37097895 TTTTTTT
1 TTTTTTT
37097902 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:37097901 original size:33 final size:30
Alignment explanation
Indices: 37097864--37097938 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
37097854 TTTTTTTTGG
*
37097864 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATT
**
37097897 TTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTTTTGCTGGAATTTTTTGCTGGATT
37097927 TTTTTTTTTGCT
1 TTTTTTTTTGCT
37097939 TCCCCTCTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 13 0.35
32 12 0.32
33 12 0.32
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (30 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATT
Found at i:37097902 original size:15 final size:16
Alignment explanation
Indices: 37097865--37097903 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
37097855 TTTTTTTGGT
37097865 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
37097881 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
37097895 TTTTTTTTG
1 TTTTTTTTG
37097904 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:37097915 original size:32 final size:31
Alignment explanation
Indices: 37097864--37097938 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
37097854 TTTTTTTTGG
*
37097864 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
**
37097895 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAA
37097927 TTTTTTTTTGCT
1 TTTTTTTTTGCT
37097939 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 8 0.21
32 21 0.54
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
Found at i:37097930 original size:14 final size:15
Alignment explanation
Indices: 37097865--37097932 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
37097855 TTTTTTTGGT
37097865 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
37097880 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
37097895 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
37097913 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
37097925 TTTTTTTT
1 TTTTTTTT
37097933 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:37098377 original size:35 final size:35
Alignment explanation
Indices: 37098337--37098442 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
37098327 GGGGTGTGTG
*
37098337 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
37098372 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
37098407 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
37098442 A
1 A
37098443 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:37099227 original size:48 final size:50
Alignment explanation
Indices: 37099151--37099297 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
37099141 ATATGACCTA
**
37099151 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
37099199 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
37099253 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
37099298 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:37099533 original size:147 final size:140
Alignment explanation
Indices: 37099354--37099942 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
37099344 TCAACTCACC
37099354 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
37099419 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
37099484 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
37099502 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
37099567 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
37099632 CCTCTCGCCA
131 CCTCTCGCAA
*
37099642 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
37099707 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
37099772 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
37099789 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
37099854 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
37099919 CCTCTCGCAA
131 CCTCTCGCAA
*
37099929 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
37099943 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:37099566 original size:70 final size:70
Alignment explanation
Indices: 37099453--37099942 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
37099443 CATAAATTGA
*
37099453 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
37099518 AACAT
66 AACAT
*
37099523 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
37099588 AACAT
66 AACAT
*
37099593 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
37099658 AACATAAATT
66 AAC----A-T
*
37099668 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
37099733 GAAACAT
64 GAAACAT
*
37099740 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
37099805 AACAT
66 AACAT
37099810 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
37099875 AACAT
66 AACAT
*
37099880 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
37099943 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:37099638 original size:217 final size:217
Alignment explanation
Indices: 37099354--37099942 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
37099344 TCAACTCACC
37099354 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
37099419 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
37099484 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
37099549 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
37099572 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
37099637 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
37099702 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
37099767 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
37099789 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
37099854 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
37099912 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
37099943 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:37114581 original size:19 final size:18
Alignment explanation
Indices: 37114559--37114635 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 18
37114549 TAATAATAAT
37114559 ATAAAATAATAATATGTA
1 ATAAAATAATAATATGTA
37114577 CATAAAAATACATAATATGTA
1 -AT-AAAATA-ATAATATGTA
*
37114598 TATATATATAATAAAAGTATGTA
1 -ATA-AAATAAT--AA-TATGTA
37114621 ATAATAATAATAATA
1 ATAA-AATAATAATA
37114636 ATATCTACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
19 4 0.08
20 11 0.23
21 17 0.35
22 10 0.21
23 6 0.12
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
ATAAAATAATAATATGTA
Found at i:37114909 original size:2 final size:2
Alignment explanation
Indices: 37114852--37114890 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
37114842 GGAATTTAAA
* *
37114852 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37114891 AGAGTATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:37114940 original size:2 final size:2
Alignment explanation
Indices: 37114935--37114984 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
37114925 AACTAATGGC
* * *
37114935 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37114974 AT AT AT AT AT A
1 AT AT AT AT AT A
37114985 CACATATTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
1 3 0.07
2 38 0.93
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:37115539 original size:11 final size:11
Alignment explanation
Indices: 37115508--37115556 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
37115498 AAAGAAAAAA
*
37115508 AAGGAAGAGAG
1 AAGGGAGAGAG
*
37115519 -AGGAAGAGAG
1 AAGGGAGAGAG
37115529 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
37115540 AAGGGAGGGGG
1 AAGGGAGAGAG
37115551 AAGGGA
1 AAGGGA
37115557 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 10 0.29
11 24 0.71
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:37115845 original size:14 final size:15
Alignment explanation
Indices: 37115810--37115845 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
37115800 TTTTTTGGTT
37115810 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
37115825 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
37115839 TTTTTTT
1 TTTTTTT
37115846 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:37115846 original size:15 final size:16
Alignment explanation
Indices: 37115809--37115847 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
37115799 TTTTTTTGGT
37115809 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
37115825 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
37115839 TTTTTTTTG
1 TTTTTTTTG
37115848 GTGCTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:37115846 original size:31 final size:29
Alignment explanation
Indices: 37115808--37115878 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
37115798 TTTTTTTTGG
* *
37115808 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGG--ATTTTTTGCTAGAAA
*
37115839 TTTTTTTTGGTGCTGGATTTTTTGCTAGAAT
1 TTTTTTTT--TGCTGGATTTTTTGCTAGAAA
37115870 TTTTTTTTT
1 TTTTTTTTT
37115879 TGCTTCCCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
29 1 0.03
31 28 0.80
33 6 0.17
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.63
Consensus pattern (29 bp):
TTTTTTTTTGCTGGATTTTTTGCTAGAAA
Found at i:37116323 original size:35 final size:35
Alignment explanation
Indices: 37116283--37116388 Score: 176
Period size: 35 Copynumber: 3.0 Consensus size: 35
37116273 GGGGTGTGTG
*
37116283 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
37116318 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
* *
37116353 ATGGTGCTTGTGGCAGATAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
37116388 A
1 A
37116389 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.23, C:0.11, G:0.48, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:37116912 original size:14 final size:14
Alignment explanation
Indices: 37116893--37116919 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37116883 ATCCTAATTG
37116893 GATATCTTGGTTCT
1 GATATCTTGGTTCT
37116907 GATATCTTGGTTC
1 GATATCTTGGTTC
37116920 CATTTTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (14 bp):
GATATCTTGGTTCT
Found at i:37121669 original size:16 final size:18
Alignment explanation
Indices: 37121622--37121669 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
37121612 AATTTAAAAT
37121622 TTTTATATATTTTTTAGA
1 TTTTATATATTTTTTAGA
* *
37121640 TTTTATTTACTTTTTA-A
1 TTTTATATATTTTTTAGA
37121657 -TTTATATATTTTT
1 TTTTATATATTTTT
37121670 ATAAAATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 11 0.42
17 1 0.04
18 14 0.54
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTATATATTTTTTAGA
Found at i:37125276 original size:22 final size:23
Alignment explanation
Indices: 37125251--37125299 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
37125241 ATCCTCTGAG
*
37125251 GAAGGGATAATATGTA-CTT-TGA
1 GAAGGGAAAAT-TGTAGCTTATGA
37125273 GAAGGGAAAATTGTAGCTTATGA
1 GAAGGGAAAATTGTAGCTTATGA
37125296 GAAG
1 GAAG
37125300 ATGATGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 7 0.29
ACGTcount: A:0.39, C:0.04, G:0.31, T:0.27
Consensus pattern (23 bp):
GAAGGGAAAATTGTAGCTTATGA
Found at i:37131502 original size:2 final size:2
Alignment explanation
Indices: 37131497--37131549 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
37131487 TATATATATA
*
37131497 TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
37131539 TG TG TA TG TG T
1 TG TG TG TG TG T
37131550 TGTAACACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.04, C:0.00, G:0.45, T:0.51
Consensus pattern (2 bp):
TG
Found at i:37137047 original size:48 final size:49
Alignment explanation
Indices: 37136994--37137089 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
37136984 ATTAAACTCT
* * *
37136994 CTCATAACTTATCTCTTA-AGGATGAAATTCATTCAAATAAATTTGACA
1 CTCATAACTAATCTATTAGAGGATGAAATTCAATCAAATAAATTTGACA
* * *
37137042 CTCATAACTAATCTATTAGGGGTTGTAATTCAATCAAATAAATTTGAC
1 CTCATAACTAATCTATTAGAGGATGAAATTCAATCAAATAAATTTGAC
37137090 TCTCTCAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
48 16 0.39
49 25 0.61
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (49 bp):
CTCATAACTAATCTATTAGAGGATGAAATTCAATCAAATAAATTTGACA
Found at i:37149953 original size:16 final size:16
Alignment explanation
Indices: 37149932--37150002 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
37149922 GTTTGGTTCA
*
37149932 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
37149948 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
37149964 CTGTAATGAAATAGGG
1 CTGTAATGGAATAGAG
* *
37149980 TTGTAATGGACTAGAG
1 CTGTAATGGAATAGAG
37149996 CTGTAAT
1 CTGTAAT
37150003 AAGTAATTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:37149977 original size:32 final size:32
Alignment explanation
Indices: 37149932--37150002 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
37149922 GTTTGGTTCA
* *
37149932 CTGTAATGGAATAGGGCTGTAATTGAATAGAG
1 CTGTAATGAAATAGGGCTGTAATGGAATAGAG
* *
37149964 CTGTAATGAAATAGGGTTGTAATGGACTAGAG
1 CTGTAATGAAATAGGGCTGTAATGGAATAGAG
37149996 CTGTAAT
1 CTGTAAT
37150003 AAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (32 bp):
CTGTAATGAAATAGGGCTGTAATGGAATAGAG
Found at i:37150046 original size:46 final size:44
Alignment explanation
Indices: 37149984--37150077 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
37149974 ATAGGGTTGT
* *
37149984 AATGGACTAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAATGG
***
37150030 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
37150074 AATG
1 AATG
37150078 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 23 0.53
45 3 0.07
46 17 0.40
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
Found at i:37159366 original size:40 final size:39
Alignment explanation
Indices: 37159322--37159464 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
37159312 GTTCAAAACA
* * ** * *
37159322 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
37159362 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
37159402 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
37159441 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
37159465 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:37161899 original size:5 final size:5
Alignment explanation
Indices: 37161889--37161924 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
37161879 ATTTACCTCC
*
37161889 TTATA TTATA TTATA TTATG TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
37161925 GTTTTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:37175676 original size:49 final size:48
Alignment explanation
Indices: 37175464--37175687 Score: 290
Period size: 48 Copynumber: 4.7 Consensus size: 48
37175454 TCATATCGGT
* * * * *
37175464 GTCGATGTCATGTCCTAAACATGGTCTTACATTAGCACACATATCATC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
37175512 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
* *
37175560 GTCGAT-CCATGTCCCAGACATCGTCTTACACTGGCACACATATCAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
* * ** * **
37175607 GTCGATGCCATGTCCCAGACATGGTCTTACACTTGCTCTTATCTC-GG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
37175654 GTGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 GT--CGATGCCATGTCCCAGACATGGTCTTACAC
37175688 AGGATCTCAT
Statistics
Matches: 158, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
47 47 0.30
48 81 0.51
49 30 0.19
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
Found at i:37179268 original size:40 final size:40
Alignment explanation
Indices: 37179183--37179333 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
37179173 AATTGAATGA
* * *
37179183 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
37179223 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
37179264 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
37179303 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
37179334 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:37179347 original size:40 final size:40
Alignment explanation
Indices: 37179220--37179349 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
37179210 ATGCTGGAAA
* * * *
37179220 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
37179260 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
37179300 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
37179340 TTATATCCGG
1 TTATATCCGG
37179350 TTTATTCCGA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:37187891 original size:40 final size:40
Alignment explanation
Indices: 37187846--37188012 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
37187836 CGGAATATAA
37187846 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37187886 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37187926 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37187966 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37188005 CCGGATAT
1 CCGGATAT
37188013 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37187996 original size:80 final size:79
Alignment explanation
Indices: 37187862--37188012 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
37187852 ATAATCACGT
*
37187862 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
37187927 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
37187942 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
37188005 CCGGATAT
64 CCGGATAT
37188013 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:37195901 original size:40 final size:40
Alignment explanation
Indices: 37195856--37196022 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
37195846 CGGAATATAA
37195856 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37195896 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37195936 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37195976 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37196015 CCGGATAT
1 CCGGATAT
37196023 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37196006 original size:80 final size:79
Alignment explanation
Indices: 37195872--37196022 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
37195862 ATAATCACGT
*
37195872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
37195937 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
37195952 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
37196015 CCGGATAT
64 CCGGATAT
37196023 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:37204147 original size:19 final size:19
Alignment explanation
Indices: 37204123--37204161 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
37204113 CATGTCACTT
*
37204123 GTATCCTAACTATTTCTAA
1 GTATCCTAACTATTCCTAA
*
37204142 GTATCCTGACTATTCCTAA
1 GTATCCTAACTATTCCTAA
37204161 G
1 G
37204162 GTTCAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (19 bp):
GTATCCTAACTATTCCTAA
Found at i:37205728 original size:12 final size:12
Alignment explanation
Indices: 37205711--37205735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37205701 ATTAAAAATG
37205711 AAACTATATAGT
1 AAACTATATAGT
37205723 AAACTATATAGT
1 AAACTATATAGT
37205735 A
1 A
37205736 TTATGACTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAACTATATAGT
Found at i:37207453 original size:47 final size:48
Alignment explanation
Indices: 37207290--37207680 Score: 239
Period size: 47 Copynumber: 8.4 Consensus size: 48
37207280 TTGCCGCTGC
** *
37207290 CATGTCCCAGACATGGTCTTATGCTGGCTATC-TCCATCAAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCAT-CATCGAGGCCGATG
* * * * * * *
37207338 CCATGTCCCAAACATGGTCTTACACTAGATCTC-TGTATACG-TGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCAT-CAT-CGAGGCCGATG
* ** **
37207387 CATGTCCAAGACA-CATCTTATGCTGGCTATCATCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
* **
37207434 CATGTCCCAGACAT-GTCTTACACTAGC-A-C-TCATC-TTG-C-AT-
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
* * *
37207474 C--GTCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
* * * * *
37207519 CATGCCCCAGACAT-GTCTTACACTAGC-ACTCATC-TCTACGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGCCGATG
* * *
37207565 CCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
** * ** * **
37207613 CATGTCCCAGACA-CATCTTACACTAGCCCTCATC-TCAATACCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
37207659 CCATGTCCCAGACATGGTCTTA
1 -CATGTCCCAGACATGGTCTTA
37207681 TACTAGCTCT
Statistics
Matches: 256, Mismatches: 63, Indels: 47
0.70 0.17 0.13
Matches are distributed among these distances:
38 11 0.04
39 12 0.05
40 2 0.01
41 3 0.01
42 6 0.02
43 1 0.00
44 7 0.03
45 5 0.02
46 44 0.17
47 89 0.35
48 38 0.15
49 37 0.14
50 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
Found at i:37207538 original size:85 final size:91
Alignment explanation
Indices: 37207409--37207680 Score: 351
Period size: 94 Copynumber: 3.0 Consensus size: 91
37207399 ACATCTTATG
* * *
37207409 CTGGCTATCATCATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT-T-G-
1 CTGGCTATCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGT
37207471 C-AT-C-GTCCCAGACATGGTCTTACA
65 CGATCCAGTCCCAGACATGGTCTTACA
*
37207495 CTGGCTATCATAATGTGGCTGATGCATGCCCCAGACATGTCTTACACTAGCACTCATCTCTACGT
1 CTGGCTATCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GT
37207560 CGATGCCATGTCCCAGACATGGTCTTACA
65 CGAT-CCA-GTCCCAGACATGGTCTTACA
** *
37207589 CTGGCTATCATAATGTGGCTGATGCATGTCCCAGACACATCTTACACTAGCCCTCATCTCAATA-
1 CTGGCTATCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC--TAG
*
37207653 CCGATGCCATGTCCCAGACATGGTCTTA
64 TCGAT-CCA-GTCCCAGACATGGTCTTA
37207681 TACTAGCTCT
Statistics
Matches: 166, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
85 42 0.25
86 14 0.08
88 1 0.01
89 1 0.01
90 2 0.01
92 1 0.01
94 103 0.62
96 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (91 bp):
CTGGCTATCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGTC
GATCCAGTCCCAGACATGGTCTTACA
Found at i:37211368 original size:47 final size:46
Alignment explanation
Indices: 37211301--37211466 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
37211291 ATTTGTGCGC
37211301 CAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGG
1 CAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGG
* *
37211347 CAGTGTAAGATCATGTGTGGGACATGGCATCGG---CATCTA-GACGAGGG
1 CAGTGTAAGA-CATGTCTGGGACAT-GCTTCGGCCACAT-TATGA-GA-GG
* * * *
37211394 CTAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGTGC
1 C-AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGG
* *
37211441 CAGAGTAAGACATGTTTGGGACATGC
1 CAGTGTAAGACATGTCTGGGACATGC
37211467 ATTGGCCTCG
Statistics
Matches: 100, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
45 5 0.05
46 42 0.42
47 31 0.31
48 18 0.18
49 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGG
Found at i:37216822 original size:110 final size:110
Alignment explanation
Indices: 37216629--37216850 Score: 444
Period size: 110 Copynumber: 2.0 Consensus size: 110
37216619 AAGAAAAACT
37216629 TGGTGAAATTCATGTTTTGGGGTTCCACACGCCTGTGTGACTCGGGACACTCCCACGTCCTCAGC
1 TGGTGAAATTCATGTTTTGGGGTTCCACACGCCTGTGTGACTCGGGACACTCCCACGTCCTCAGC
37216694 TAGTGTGCGACACTGACTTTAGGGCATGGCCATGACACACGCCCG
66 TAGTGTGCGACACTGACTTTAGGGCATGGCCATGACACACGCCCG
37216739 TGGTGAAATTCATGTTTTGGGGTTCCACACGCCTGTGTGACTCGGGACACTCCCACGTCCTCAGC
1 TGGTGAAATTCATGTTTTGGGGTTCCACACGCCTGTGTGACTCGGGACACTCCCACGTCCTCAGC
37216804 TAGTGTGCGACACTGACTTTAGGGCATGGCCATGACACACGCCCG
66 TAGTGTGCGACACTGACTTTAGGGCATGGCCATGACACACGCCCG
37216849 TG
1 TG
37216851 TGGCCTACCC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 112 1.00
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (110 bp):
TGGTGAAATTCATGTTTTGGGGTTCCACACGCCTGTGTGACTCGGGACACTCCCACGTCCTCAGC
TAGTGTGCGACACTGACTTTAGGGCATGGCCATGACACACGCCCG
Found at i:37229061 original size:27 final size:28
Alignment explanation
Indices: 37229004--37229073 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
37228994 AAATTTGTAC
**
37229004 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
37229032 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37229059 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37229074 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37236852 original size:27 final size:28
Alignment explanation
Indices: 37236795--37236864 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
37236785 AAATTTGTAC
**
37236795 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
37236823 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37236850 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37236865 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37238979 original size:37 final size:37
Alignment explanation
Indices: 37238877--37238979 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
37238867 TCGTTTACTT
* *
37238877 GATGCCATAGTCCAACTATGGTCTTACACAAAATCAC
1 GATGCCATAGTCCAGCTATGGTCTTACATAAAATCAC
* * *** *
37238914 AATGCCATAGCCCAGCTATGGTCTTACATGTCATTAC
1 GATGCCATAGTCCAGCTATGGTCTTACATAAAATCAC
*
37238951 GATGCCATAGTCCAGTTATGGTCTTACAT
1 GATGCCATAGTCCAGCTATGGTCTTACAT
37238980 TCCACACTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (37 bp):
GATGCCATAGTCCAGCTATGGTCTTACATAAAATCAC
Found at i:37244127 original size:37 final size:37
Alignment explanation
Indices: 37244077--37244151 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
37244067 TGGAGACACA
37244077 TTCTTGAGCATATTTACTTAATCTCACAAATTCTCTT
1 TTCTTGAGCATATTTACTTAATCTCACAAATTCTCTT
37244114 TTCTTGAGCATATTTACTTAATCTCACAAATTCTCTT
1 TTCTTGAGCATATTTACTTAATCTCACAAATTCTCTT
37244151 T
1 T
37244152 AATACTCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.47
Consensus pattern (37 bp):
TTCTTGAGCATATTTACTTAATCTCACAAATTCTCTT
Found at i:37250981 original size:9 final size:9
Alignment explanation
Indices: 37250967--37251308 Score: 354
Period size: 9 Copynumber: 38.3 Consensus size: 9
37250957 ATGTATTAGT
37250967 TAAGTTATG
1 TAAGTTATG
*
37250976 TAAGTTGT-
1 TAAGTTATG
37250984 TAAGTTATG
1 TAAGTTATG
37250993 TAAGTTATG
1 TAAGTTATG
* *
37251002 TGATTTATG
1 TAAGTTATG
* *
37251011 TAAATTACG
1 TAAGTTATG
37251020 TAAGTTATG
1 TAAGTTATG
*
37251029 TGAGTTATG
1 TAAGTTATG
*
37251038 TAAGTTGT-
1 TAAGTTATG
37251046 TAAGTTATG
1 TAAGTTATG
37251055 TAAGTTATG
1 TAAGTTATG
*
37251064 TGAGTTATG
1 TAAGTTATG
*
37251073 TAAATTATG
1 TAAGTTATG
37251082 TAAGTTATG
1 TAAGTTATG
*
37251091 TGAGTTATG
1 TAAGTTATG
37251100 TAAGTTGATATG
1 TAAG-T--TATG
*
37251112 TATGTTATG
1 TAAGTTATG
*
37251121 TGAGTTATG
1 TAAGTTATG
*
37251130 TAAATTATG
1 TAAGTTATG
37251139 TAAGTTATG
1 TAAGTTATG
*
37251148 TAAGTTGT-
1 TAAGTTATG
*
37251156 TAAGTTTTG
1 TAAGTTATG
*
37251165 TATGTTATG
1 TAAGTTATG
*
37251174 TGAGTTATG
1 TAAGTTATG
*
37251183 TAAATTATG
1 TAAGTTATG
*
37251192 TAAGTTGT-
1 TAAGTTATG
37251200 TAAGTTATG
1 TAAGTTATG
*
37251209 TATGTTATG
1 TAAGTTATG
*
37251218 TGAGTTATG
1 TAAGTTATG
* *
37251227 TAAATTATA
1 TAAGTTATG
37251236 TAAGTTATG
1 TAAGTTATG
* *
37251245 TGAGTCATG
1 TAAGTTATG
*
37251254 TAAGTTGT-
1 TAAGTTATG
37251262 TAAGTTATG
1 TAAGTTATG
*
37251271 TATGTTATG
1 TAAGTTATG
*
37251280 TAAATTATG
1 TAAGTTATG
*
37251289 TAAATTATG
1 TAAGTTATG
37251298 TAAGTT-TG
1 TAAGTTATG
37251306 TAA
1 TAA
37251309 TTTAATTATA
Statistics
Matches: 271, Mismatches: 54, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
8 40 0.15
9 222 0.82
10 1 0.00
11 1 0.00
12 7 0.03
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:37251029 original size:53 final size:53
Alignment explanation
Indices: 37250967--37251308 Score: 373
Period size: 53 Copynumber: 6.2 Consensus size: 53
37250957 ATGTATTAGT
*
37250967 TAAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGATTTATGTAAATTACGTAAG
1 TAAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTA--T--G
37251024 TTATGTGAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
1 -TA----AGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
* * *
37251082 TAAGTTATGTGAGTTATGTAAGTTGATATGTATGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGT-TAAG-T--TATGTAAGTTATGTGAGTTATGTAAATTATG
* *
37251139 TAAGTTATGTAAGTTGTTAAGTTTTGTATGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
* * * * * * * *
37251192 TAAGTTGT-TAAGTTATGTATGTTATGTGAGTTATGTAAATTATATAAGTTATG
1 TAAGTTATGTAAGTTGT-TAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
* * * * *
37251245 TGAGTCATGTAAGTTGTTAAGTTATGTATGTTATGTAAATTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
37251298 TAAGTT-TGTAA
1 TAAGTTATGTAA
37251309 TTTAATTATA
Statistics
Matches: 246, Mismatches: 28, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
52 12 0.05
53 118 0.48
54 11 0.04
55 2 0.01
56 4 0.02
57 47 0.19
58 3 0.01
60 1 0.00
62 48 0.20
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (53 bp):
TAAGTTATGTAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAAATTATG
Found at i:37251066 original size:62 final size:61
Alignment explanation
Indices: 37250969--37251303 Score: 341
Period size: 62 Copynumber: 5.5 Consensus size: 61
37250959 GTATTAGTTA
*
37250969 AGTTATGTAAGTTGT-TAAGTTATGTAAGTTATGTGATTTATGTAAATTACGTAAGTTATGT
1 AGTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTA-GTAAGTTATGT
37251030 GAGTTATGTAAGTTGT-TAAGTTATGTAAGTTATGTGAGTTATGTAAATTATGTAAGTTATGT
1 -AGTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTA-GTAAGTTATGT
*
37251092 GAGTTATGTAAG-T-TG--A--TATGTATGTTATGTGAGTTATGTAAATTATGTAAGTTATGT
1 -AGTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTA-GTAAGTTATGT
* * * * * * *
37251149 AAGTTGT-TAAGTTTTGTATGTTATGTGAGTTATGTAAATTATGTAAGTT-GTTAAGTTATGT
1 -AGTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTAG-TAAGTTATGT
* * * * * *
37251210 ATGTTATGTGAGTTATGTAAATTATATAAGTTATGTGAGTCATGTAAGTT-GTTAAGTTATGT
1 A-GTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTAG-TAAGTTATGT
* * *
37251272 ATGTTATGTAAATTATGTAAATTATGTAAGTT
1 A-GTTATGTAAGTTGTGTAAGTTATGTAAGTT
37251304 TGTAATTTAA
Statistics
Matches: 239, Mismatches: 24, Indels: 20
0.84 0.08 0.07
Matches are distributed among these distances:
56 4 0.02
57 46 0.19
58 2 0.01
59 1 0.00
60 3 0.01
61 15 0.06
62 168 0.70
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (61 bp):
AGTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTGAGTTATGTAAATTAGTAAGTTATGT
Found at i:37253351 original size:40 final size:40
Alignment explanation
Indices: 37253241--37253382 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
37253231 GGATATAGCG
* * * *
37253241 ACTCGCTCAAAAGCCTTCGGGACATAG-CCCGGTTATAATA
1 ACTCGCACAAAAGCCTTCGGGA-ATTGACCCGGTTTTAGTA
* * * * *
37253281 GCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
* * *
37253321 ACTCGCACAAATGCCTTCGGGAATTGACCC-GATTTAGTC
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
*
37253360 ACTTAGCACAAAAGCCTTCGGGA
1 AC-TCGCACAAAAGCCTTCGGGA
37253383 CTTAGCCCGG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 9 0.11
40 74 0.89
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
Found at i:37254107 original size:2 final size:2
Alignment explanation
Indices: 37254100--37254129 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37254090 ATGTGCAAAC
37254100 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37254130 GCTAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37257959 original size:28 final size:29
Alignment explanation
Indices: 37257892--37257980 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
37257882 ATCAAAACCT
* * *
37257892 TAAACCTTAAACCATTAAACTATATCCCC
1 TAAACCATAAACTACTAAACTATATCCCC
* *
37257921 -ATAATCTTAAACT-CTAAACTATATCCCC
1 TA-AACCATAAACTACTAAACTATATCCCC
* * *
37257949 TAAACCATAAACTACAAAACAATAACCCC
1 TAAACCATAAACTACTAAACTATATCCCC
37257978 TAA
1 TAA
37257981 GCCTTAACCA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (29 bp):
TAAACCATAAACTACTAAACTATATCCCC
Found at i:37258170 original size:14 final size:14
Alignment explanation
Indices: 37258153--37258241 Score: 81
Period size: 14 Copynumber: 6.2 Consensus size: 14
37258143 CACAAAATAA
*
37258153 TAACCCCTAAACCT
1 TAACCCCTAACCCT
*
37258167 TAACCCCTAAACCAT
1 TAACCCCT-AACCCT
*
37258182 TAACCCATAACCCCT
1 TAACCCCTAA-CCCT
* *
37258197 AAACCCCTAACCCC
1 TAACCCCTAACCCT
*
37258211 TAACCCATAACCCT
1 TAACCCCTAACCCT
*
37258225 TAAACACC-AACCCT
1 T-AACCCCTAACCCT
37258239 TAA
1 TAA
37258242 GCCATAAGCC
Statistics
Matches: 60, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
13 2 0.03
14 32 0.53
15 26 0.43
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (14 bp):
TAACCCCTAACCCT
Found at i:37258179 original size:22 final size:22
Alignment explanation
Indices: 37258154--37258229 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
37258144 ACAAAATAAT
*
37258154 AACCCCTAAACCTTAACCCCTA
1 AACCCCTAAACCATAACCCCTA
** *
37258176 AACCATTAACCCATAACCCCTA
1 AACCCCTAAACCATAACCCCTA
* * *
37258198 AACCCCTAACCCCTAACCCAT-
1 AACCCCTAAACCATAACCCCTA
*
37258219 AACCCTTAAAC
1 AACCCCTAAAC
37258230 ACCAACCCTT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 9 0.20
22 35 0.80
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCCTAAACCATAACCCCTA
Found at i:37258214 original size:7 final size:7
Alignment explanation
Indices: 37258153--37258223 Score: 70
Period size: 7 Copynumber: 9.9 Consensus size: 7
37258143 CACAAAATAA
37258153 TAACCCC
1 TAACCCC
* *
37258160 TAAACCT
1 TAACCCC
37258167 TAACCCC
1 TAACCCC
**
37258174 TAAACCAT
1 T-AACCCC
*
37258182 TAACCCA
1 TAACCCC
37258189 TAACCCC
1 TAACCCC
37258196 TAAACCCC
1 T-AACCCC
37258204 TAACCCC
1 TAACCCC
*
37258211 TAACCCA
1 TAACCCC
37258218 TAACCC
1 TAACCC
37258224 TTAAACACCA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
7 40 0.77
8 12 0.23
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (7 bp):
TAACCCC
Found at i:37258237 original size:28 final size:28
Alignment explanation
Indices: 37258182--37258285 Score: 93
Period size: 28 Copynumber: 3.7 Consensus size: 28
37258172 CCTAAACCAT
* *
37258182 TAACCCATAACCCCTAAACCCCTAACCCC
1 TAACCCATAACCCATAAACACC-AACCCC
* *
37258211 TAACCCATAACCCTTAAACACCAACCCT
1 TAACCCATAACCCATAAACACCAACCCC
* * * *
37258239 TAAGCCATAAGCCATAAACA-TAATCCC
1 TAACCCATAACCCATAAACACCAACCCC
**
37258266 TAAACCCATAATGCATAAAC
1 T-AACCCATAACCCATAAAC
37258286 CTTTAAATAG
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
27 5 0.08
28 37 0.60
29 20 0.32
ACGTcount: A:0.41, C:0.38, G:0.03, T:0.17
Consensus pattern (28 bp):
TAACCCATAACCCATAAACACCAACCCC
Found at i:37260928 original size:19 final size:19
Alignment explanation
Indices: 37260904--37260941 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
37260894 CATCAACAAG
*
37260904 TTAGTCACTTAACATCACA
1 TTAGTCACATAACATCACA
37260923 TTAGTCACATAACATCACA
1 TTAGTCACATAACATCACA
37260942 CCATGTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.29
Consensus pattern (19 bp):
TTAGTCACATAACATCACA
Found at i:37269279 original size:23 final size:23
Alignment explanation
Indices: 37269253--37269298 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
37269243 CTTTAAGACA
37269253 GGGAAAAGAGAGGGGTAAGCATT
1 GGGAAAAGAGAGGGGTAAGCATT
37269276 GGGAAAAGAGAGGGGTAAGCATT
1 GGGAAAAGAGAGGGGTAAGCATT
37269299 TACATGCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.13
Consensus pattern (23 bp):
GGGAAAAGAGAGGGGTAAGCATT
Found at i:37285436 original size:29 final size:29
Alignment explanation
Indices: 37285323--37285424 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
37285313 AAAATTGTAC
37285323 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
37285352 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
37285381 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
37285410 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37285425 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:37287074 original size:22 final size:22
Alignment explanation
Indices: 37287049--37287097 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
37287039 GATTAAAGTA
*
37287049 AAGACTGATTTGACCTTTGAAG
1 AAGAATGATTTGACCTTTGAAG
37287071 AAGAATGATTTGACCTTTGAAG
1 AAGAATGATTTGACCTTTGAAG
37287093 AAGAA
1 AAGAA
37287098 CCCGTACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (22 bp):
AAGAATGATTTGACCTTTGAAG
Found at i:37294329 original size:31 final size:31
Alignment explanation
Indices: 37294294--37294399 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 31
37294284 ATGTATGCAC
37294294 CATAGGAATAGTTAGGATACATATGTCATAA
1 CATAGGAATAGTTAGGATACATATGTCATAA
** * * * *
37294325 CATAGGTTTTCGTTATGTGATTTCGTGCATGT-ATGCAC
1 CATAGG-AATAGTTA-G-GA-TACAT--ATGTCAT--AA
37294363 CATAGGAATAGTTAGGATACATATGTCATAA
1 CATAGGAATAGTTAGGATACATATGTCATAA
37294394 CATAGG
1 CATAGG
37294400 TTTCCGTTAT
Statistics
Matches: 54, Mismatches: 12, Indels: 18
0.64 0.14 0.21
Matches are distributed among these distances:
31 13 0.24
32 9 0.17
33 3 0.06
34 5 0.09
35 5 0.09
36 3 0.06
37 9 0.17
38 7 0.13
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (31 bp):
CATAGGAATAGTTAGGATACATATGTCATAA
Done.