Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 140 of 444
Found at i:37294394 original size:69 final size:69
Alignment explanation
Indices: 37294283--37294420 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
37294273 CTATTCGAGA
*
37294283 CATGTATGCACCATAGGAATAGTTAGGATACATATGTCATAACATAGGTTTTCGTTATGTGATTT
1 CATGTATGCACCATAGGAATAGTTAGGATACATATGTCATAACATAGGTTTCCGTTATGTGATTT
37294348 CGTG
66 CGTG
37294352 CATGTATGCACCATAGGAATAGTTAGGATACATATGTCATAACATAGGTTTCCGTTATGTGATTT
1 CATGTATGCACCATAGGAATAGTTAGGATACATATGTCATAACATAGGTTTCCGTTATGTGATTT
37294417 CGTG
66 CGTG
37294421 GAAGACCACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (69 bp):
CATGTATGCACCATAGGAATAGTTAGGATACATATGTCATAACATAGGTTTCCGTTATGTGATTT
CGTG
Found at i:37298331 original size:28 final size:28
Alignment explanation
Indices: 37298266--37298366 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37298256 ATAGTGAATC
*
37298266 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
37298295 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37298323 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
37298353 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37298367 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37306256 original size:28 final size:28
Alignment explanation
Indices: 37306191--37306291 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37306181 ATAGTGAATC
*
37306191 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
37306220 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37306248 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
37306278 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37306292 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37313766 original size:26 final size:26
Alignment explanation
Indices: 37313737--37313844 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
37313727 TGGTACAAAT
37313737 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
37313763 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37313789 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37313815 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37313841 TGAT
1 TGAT
37313845 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37316991 original size:40 final size:40
Alignment explanation
Indices: 37316936--37317178 Score: 384
Period size: 40 Copynumber: 6.1 Consensus size: 40
37316926 TGGATGATAA
* * *
37316936 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
37316976 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37317016 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37317056 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37317096 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
37317135 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
37317175 CCGG
1 CCGG
37317179 TTCAATCCTG
Statistics
Matches: 193, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 38 0.20
40 155 0.80
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37325297 original size:40 final size:40
Alignment explanation
Indices: 37325242--37325601 Score: 555
Period size: 40 Copynumber: 9.0 Consensus size: 40
37325232 GATGATAACT
* *
37325242 GGGCTAAGTCCCGAAGGCATTTGCGCTG-GTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-TATCC
*
37325282 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
37325322 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
37325362 GGGCAAAGTCTCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37325402 GGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37325442 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37325482 GGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
37325522 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
37325562 GGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
37325602 AGTTCAATCC
Statistics
Matches: 297, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.01
40 293 0.99
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:37327483 original size:54 final size:53
Alignment explanation
Indices: 37327401--37327541 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
37327391 AGGAAGCGTC
*
37327401 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
37327455 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
37327509 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
37327542 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:37327552 original size:27 final size:27
Alignment explanation
Indices: 37327401--37327559 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
37327391 AGGAAGCGTC
* *
37327401 CTGGTGGCTATGCCACAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
37327428 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
37327455 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
37327482 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
37327509 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
37327536 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
37327560 GCATCCTCCC
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 104 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:37332467 original size:43 final size:43
Alignment explanation
Indices: 37332419--37332537 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
37332409 GCATGAAACT
* *
37332419 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
37332462 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
37332505 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
37332538 TAATACCGGT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.11, C:0.22, G:0.34, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:37332714 original size:25 final size:25
Alignment explanation
Indices: 37332669--37332719 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
37332659 TGTGTAATAA
*
37332669 CGAATGAATATGAGCATTATGTGTG
1 CGAATGAATATGAGCACTATGTGTG
*
37332694 CGAATGATTA-GAGGCACTATGTGTG
1 CGAATGAATATGA-GCACTATGTGTG
37332719 C
1 C
37332720 AAATTCCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (25 bp):
CGAATGAATATGAGCACTATGTGTG
Found at i:37332738 original size:54 final size:55
Alignment explanation
Indices: 37332680--37332813 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 55
37332670 GAATGAATAT
* *
37332680 GAGCATTATGTGTGCGA-AT-G-ATTAGAGGCACTATGTGTGCAAATTCCTTTAACC
1 GAGCACTATGTGTGCGAGATCGAATT-GAGGCACTATGTGTGCAAATT-CTTCAACC
* * *
37332734 GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTTCTTCAACC
1 GAGCACTATGTGTGCGAGATC-G-AATTGAGGCACTATGTGTGCAAATTCTTCAACC
*
37332791 GAGCACTATGTATGCGAGATCGA
1 GAGCACTATGTGTGCGAGATCGA
37332814 CCAGTGGGCA
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
54 16 0.23
55 3 0.04
56 1 0.01
57 28 0.41
58 18 0.26
59 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (55 bp):
GAGCACTATGTGTGCGAGATCGAATTGAGGCACTATGTGTGCAAATTCTTCAACC
Found at i:37332801 original size:57 final size:58
Alignment explanation
Indices: 37332704--37332812 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
37332694 CGAATGATTA
* *
37332704 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
* * *
37332762 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTATGCGAGATCG
1 GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCG
37332813 ACCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 28 0.61
58 18 0.39
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (58 bp):
GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
Found at i:37332806 original size:28 final size:27
Alignment explanation
Indices: 37332707--37332808 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 27
37332697 ATGATTAGAG
* *
37332707 GCACTATGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAGTT-C-TTAACCGA
* * **
37332736 GCACTATGTGTGCGAGATCGGTAATTGA
1 GCACTATGTGTGCGAGTTC-TTAACCGA
*
37332764 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAGTTCTT-AACCGA
*
37332793 GCACTATGTATGCGAG
1 GCACTATGTGTGCGAG
37332809 ATCGACCAGT
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAACCGA
Found at i:37335211 original size:68 final size:65
Alignment explanation
Indices: 37335127--37335280 Score: 168
Period size: 68 Copynumber: 2.3 Consensus size: 65
37335117 CTTAAAATTA
* *
37335127 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTAA
1 AGCTG-TCGAATGTGTTAGATTCACTATTCAAAGCACT-A-CATATATG-TGTTTTATTTAGTAA
37335191 ATGT
62 ATGT
* * * * *
37335195 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACATATATGTGTTTTATTTAGTAAATG
1 AGCTGT-CGAATGTGTTAGATTCACTATTCAAAGCACTACATATATGTGTTTTATTTAGTAAATG
37335260 T
65 T
* *
37335261 AGTTGTCGAATCTGTT-GATT
1 AGCTGTCGAATGTGTTAGATT
37335281 TCACAGTTAA
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
64 3 0.04
65 9 0.12
66 23 0.31
67 8 0.11
68 30 0.41
69 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (65 bp):
AGCTGTCGAATGTGTTAGATTCACTATTCAAAGCACTACATATATGTGTTTTATTTAGTAAATGT
Found at i:37339618 original size:26 final size:26
Alignment explanation
Indices: 37339589--37339696 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
37339579 TGGTACAAAT
37339589 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
37339615 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37339641 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37339667 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37339693 TGAT
1 TGAT
37339697 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37341339 original size:27 final size:27
Alignment explanation
Indices: 37341308--37341419 Score: 174
Period size: 27 Copynumber: 4.1 Consensus size: 27
37341298 TTATTTGATC
37341308 GGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTCTGCCACATATATCTGTTCT
* *
37341335 GGTGGCTATGCCACGAT-TATCTGATCT
1 GGTGGCTCTGCCAC-ATATATCTGTTCT
37341362 GGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTCTGCCACATATATCTGTTCT
37341389 GGTGGCTCTGCCACA-ATATCTGTATCT
1 GGTGGCTCTGCCACATATATCTGT-TCT
37341416 GGTG
1 GGTG
37341420 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
26 10 0.13
27 66 0.85
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACATATATCTGTTCT
Found at i:37341385 original size:54 final size:53
Alignment explanation
Indices: 37341280--37341419 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 53
37341270 AGGAAGCGTC
* * *
37341280 CTGGTGGTTATGCCATAATTATTTGATC-GGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCA-CATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
37341333 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
37341387 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
37341420 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
53 31 0.39
54 48 0.61
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:37341430 original size:27 final size:27
Alignment explanation
Indices: 37341308--37341437 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 27
37341298 TTATTTGATC
37341308 GGTGGCTCTGCCACATATATCTGT-TCT
1 GGTGGCTCTGCCACA-ATATCTGTATCT
* *
37341335 GGTGGCTATGCCACGATTATCTG-ATCT
1 GGTGGCTCTGCCAC-AATATCTGTATCT
37341362 GGTGGCTCTGCCACATATATCTGT-TCT
1 GGTGGCTCTGCCACA-ATATCTGTATCT
37341389 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTATCT
* *
37341416 GGTGACT-TCGTCACAATATCTG
1 GGTGGCTCT-GCCACAATATCTG
37341438 GCATCCTCGC
Statistics
Matches: 91, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.11
27 80 0.88
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATCT
Found at i:37344426 original size:27 final size:27
Alignment explanation
Indices: 37344396--37344467 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
37344386 CTCAAGCAAA
37344396 AATCCTCAATTCATAATCAAAATAAAT
1 AATCCTCAATTCATAATCAAAATAAAT
*
37344423 AATCCTCATTTCATAATCAAAATAAAT
1 AATCCTCAATTCATAATCAAAATAAAT
** * *
37344450 TCTTCTCAATTTATAATC
1 AATCCTCAATTCATAATC
37344468 CTTATCAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.36
Consensus pattern (27 bp):
AATCCTCAATTCATAATCAAAATAAAT
Found at i:37350326 original size:28 final size:28
Alignment explanation
Indices: 37350257--37350357 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37350247 GACAAGATTG
* * * *
37350257 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37350287 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37350315 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37350344 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37350358 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37358248 original size:28 final size:28
Alignment explanation
Indices: 37358179--37358279 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37358169 GACAAGATTG
* * * *
37358179 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37358209 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37358237 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37358266 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37358280 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37362524 original size:2 final size:2
Alignment explanation
Indices: 37362517--37362545 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37362507 ATTATAAGCT
37362517 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37362546 TCATGCATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37364380 original size:71 final size:71
Alignment explanation
Indices: 37364296--37364459 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37364286 CGATTTGTCT
37364296 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37364361 CTTTCA
66 CTTTCA
37364367 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37364432 CTTTCA
66 CTTTCA
37364438 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37364460 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37364497 original size:71 final size:70
Alignment explanation
Indices: 37364296--37364493 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37364286 CGATTTGTCT
* * * *
37364296 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37364361 CTTTCA
65 CTTTCA
* * * *
37364367 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37364432 CTTTCA
65 CTTTCA
* *
37364438 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37364494 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37371946 original size:71 final size:71
Alignment explanation
Indices: 37371862--37372025 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37371852 CGATTTGTCT
37371862 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37371927 CTTTCA
66 CTTTCA
37371933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37371998 CTTTCA
66 CTTTCA
37372004 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37372026 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37372063 original size:71 final size:70
Alignment explanation
Indices: 37371862--37372059 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37371852 CGATTTGTCT
* * * *
37371862 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37371927 CTTTCA
65 CTTTCA
* * * *
37371933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37371998 CTTTCA
65 CTTTCA
* *
37372004 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37372060 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37375402 original size:48 final size:48
Alignment explanation
Indices: 37375327--37375557 Score: 181
Period size: 48 Copynumber: 4.9 Consensus size: 48
37375317 CACATGGTAG
* * * *
37375327 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *** *
37375375 GATTCAAATGCCATGTCCCAGACATGGTCTTATATGGAATTGTAGATC
1 GATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
37375423 GATGCCAATGCCGTGTCCTAGACATGGTCTTACATGAGATCACATATC
1 GATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
** ** *
37375471 GATGCCGAT---A-GT-CCA-ACTATGGTCTTACATGAAATTACATAT-
1 GATGCAAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
37375513 TAGTGCCAAA-GCCATGTCCCAGACATTGTCTTACATGGGATCACA
1 GA-TG-CAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
37375558 CATAAACCTA
Statistics
Matches: 140, Mismatches: 34, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
42 3 0.02
43 26 0.19
44 4 0.03
46 1 0.01
47 2 0.01
48 102 0.73
49 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:37381940 original size:37 final size:37
Alignment explanation
Indices: 37381881--37382026 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
37381871 AGCTCAGACG
* * *
37381881 AAATCTCCACACGAAGTTATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
37381918 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37381955 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
37381992 TAATCTCCACACATAGTCATCGGGACTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37382027 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:37382230 original size:50 final size:51
Alignment explanation
Indices: 37382176--37382313 Score: 233
Period size: 50 Copynumber: 2.7 Consensus size: 51
37382166 CATCGCCTAC
* *
37382176 ATATTTCACACTAGCTATTCGGCTTTACCACATATACATATCTC-ATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATAT
37382226 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATAT
*
37382278 ATATTTCACATTAGCCATTCGGCTTTACCATATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
37382314 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
50 42 0.51
52 41 0.49
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (51 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATAT
Found at i:37382336 original size:47 final size:47
Alignment explanation
Indices: 37382283--37382382 Score: 132
Period size: 47 Copynumber: 2.1 Consensus size: 47
37382273 TATATATATT
* *
37382283 TCACATTAGCCATTCGGCTTTA-C-CATATATATGCATGTTCACAATCA
1 TCACATTAGCCATTCGGCCTTATCTCATATATA--CACGTTCACAATCA
* *
37382330 TCACATTGGCCATTCGGCCTTATCTCATATATACACGTTCACAGTCA
1 TCACATTAGCCATTCGGCCTTATCTCATATATACACGTTCACAATCA
37382377 TCACAT
1 TCACAT
37382383 AAAATCCTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
47 38 0.81
48 1 0.02
49 8 0.17
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTATCTCATATATACACGTTCACAATCA
Found at i:37384548 original size:39 final size:40
Alignment explanation
Indices: 37384407--37384613 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
37384397 CAATTGAATG
* * ** * **
37384407 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * **
37384447 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
37384487 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
37384527 AAATCC-GGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
37384566 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
37384606 ATATCCGG
1 ATATCCGG
37384614 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.27
40 96 0.69
41 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:37392448 original size:40 final size:40
Alignment explanation
Indices: 37392389--37392596 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
37392379 CAATTGAATG
* * * *
37392389 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37392429 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
37392469 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37392509 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37392549 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37392589 ATATCCGG
1 ATATCCGG
37392597 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37392527 original size:80 final size:80
Alignment explanation
Indices: 37392391--37392596 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
37392381 ATTGAATGAT
* * ** * * *
37392391 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
37392455 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
37392471 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
37392536 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
37392551 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37392597 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:37395317 original size:29 final size:27
Alignment explanation
Indices: 37395283--37395385 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
37395273 TACTCAATCA
*
37395283 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
37395312 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
37395341 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
37395370 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
37395386 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:37404749 original size:33 final size:34
Alignment explanation
Indices: 37404700--37404771 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
37404690 AACAGTGCAT
* * * * *
37404700 ACAGTAACAGTTTGGGCTTGAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
37404734 ACAGT-ACAGTCTGGGCCTAAGCCCTATGCAGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
37404767 ACAGT
1 ACAGT
37404772 GTGGGCCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 28 0.85
34 5 0.15
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
Found at i:37408786 original size:16 final size:16
Alignment explanation
Indices: 37408765--37408807 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
37408755 ATGTATCAAC
*
37408765 AAAAGCTAAAATGTCG
1 AAAAGCCAAAATGTCG
*
37408781 AAAAGCCGAAATGTCG
1 AAAAGCCAAAATGTCG
*
37408797 AAAAGTCAAAA
1 AAAAGCCAAAA
37408808 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (16 bp):
AAAAGCCAAAATGTCG
Found at i:37409071 original size:29 final size:28
Alignment explanation
Indices: 37409014--37409127 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 28
37409004 GTGAGCATGA
* * *
37409014 ATATGAATGTGACTGGTCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
37409042 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
*
37409071 ATAT-AAGGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
37409099 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
37409127 A
1 A
37409128 GATACAAGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 54 0.71
29 22 0.29
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:37413208 original size:16 final size:16
Alignment explanation
Indices: 37413189--37413219 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37413179 GCAAAAGTCG
37413189 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
37413205 AAATGCCGAAAAGCC
1 AAATGCCGAAAAGCC
37413220 GAAAGTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:37413222 original size:8 final size:8
Alignment explanation
Indices: 37413181--37413223 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
37413171 ATGTATCGGC
*
37413181 AAAAGTCG
1 AAAAGCCG
*
37413189 AAATGCCG
1 AAAAGCCG
37413197 AAAAGCC-
1 AAAAGCCG
37413204 AAAATGCCG
1 AAAA-GCCG
37413213 AAAAGCCG
1 AAAAGCCG
37413221 AAA
1 AAA
37413224 GTTTAGCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
7 4 0.13
8 22 0.73
9 4 0.13
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:37413500 original size:27 final size:28
Alignment explanation
Indices: 37413447--37413521 Score: 98
Period size: 27 Copynumber: 2.6 Consensus size: 28
37413437 TGAATGTGAC
* *
37413447 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAA-TGGCCATATAAAGGTGATT
*
37413476 TGGGCCTAATGG-CATATACAGGTGATT
1 TGGGCCTAATGGCCATATAAAGGTGATT
37413503 TGGGCCTAATGGGCCATAT
1 TGGGCCTAAT-GGCCATAT
37413522 GAATATGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 23 0.56
28 4 0.10
29 14 0.34
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
TGGGCCTAATGGCCATATAAAGGTGATT
Found at i:37413541 original size:28 final size:29
Alignment explanation
Indices: 37413434--37413546 Score: 128
Period size: 28 Copynumber: 4.0 Consensus size: 29
37413424 GTGAGCATGA
* *
37413434 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37413462 ATATAAATGTGATTTGGGCCTAAT-GG-C
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37413489 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
37413518 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
37413546 A
1 A
37413547 GATACAGGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.01
27 22 0.30
28 31 0.42
29 18 0.25
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:37419686 original size:481 final size:476
Alignment explanation
Indices: 37418786--37419695 Score: 1278
Period size: 481 Copynumber: 1.9 Consensus size: 476
37418776 TTGTACCCAC
* *
37418786 TGTGTGACAGCCCAAAATTGACCCTAGTCGGAATGTGGTTTCGGGACCACAAAACCGACGCATAA
1 TGTGTGACAGCCCAAAATAGACCCTAGCCGGAATGTGGTTTCGGGACCACAAAACCGACGCATAA
* * * * *
37418851 AAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTGTGACATTTTTTGGTG
66 AAATAATTTAAAATTTATTTCGATGCCTATAATATGTGTGTACTCATGTATGACATTTTTTGATA
* * * *
37418916 ATTGATTTAGTGTTATTAAGGTGAATTTCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACG
131 ATTGAATTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAATACG
** *
37418981 ATAGGGAATTGTGTGATGACTAATTAAAGCATGCATGCAAAACAATGGACTTGCATGTCAAATTC
196 ATAGGGAAAGGGGTGATGACTAATTAAAGCATGCATGCAAAACAATGGACTTGCATGTCAAATTC
* * * * * *
37419046 CCCTTTTTATAGGTGGTGGCCGGCCATGGCAAGGAATTATGGGCAAAGAAAACATGTTATGACAT
261 CCCTTTTTACAAGTGATGGCCGGCCATGACAAAGAATTATGGG---AGAAAACATGTCATGACAT
* * * * * * *
37419111 GTTTTGTTAATGCATGATGTATTAAGTGATAAAATAATTAGATGAGGGAAGAGAAATAAAAAAAA
323 GTTTTGTTAAGGCATGAGGGATGAAATGATAAAATAATAAGATGAGGGAAGAAAAATAAAAAAAA
* *
37419176 ATGTGTGTGAGAGTGTAGCAATCCCCCATTGCCGTGCAAGTGAAAGAAAAACAAAAAAAAAATTG
388 ATGTGTGTGAGAGAGTAGCAATACCCCATTGCCGTGCAAGTGAAAGAAAAACAAAAAAAAAATTG
37419241 TTCATCCTTGTTCTCTCCTTCTTT
453 TTCATCCTTGTTCTCTCCTTCTTT
*
37419265 TGTGTGACAGCCCAAAATAGACCCTAGCCGGAATGTGGTTTCGGGACCACAAAACCGAGGCATAA
1 TGTGTGACAGCCCAAAATAGACCCTAGCCGGAATGTGGTTTCGGGACCACAAAACCGACGCATAA
* *
37419330 CAATAATTTAAAATTTATTTCGATGCCTATAATATGTGTGTATTCATGTATGACATTTTTTTTGA
66 AAATAATTTAAAATTTATTTCGATGCCTATAATATGTGTGTACTCATGTATGACA--TTTTTTGA
37419395 TAATTGAATTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAATA
129 TAATTGAATTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAATA
*
37419460 CGATAGGGAAAGGGGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAAT
194 CGATAGGGAAAGGGGTGATGACTAATTAAAGCATGCATGCAAAACAATGGACTTGCATGTCAAAT
**
37419525 TCCCCCTTTTTACAAGTGATGGCCGGCCATGACAAAGAGA-TATGGG-TTAAACATGTCATGAAA
259 T-CCCCTTTTTACAAGTGATGGCCGGCCATGACAAAGA-ATTATGGGAGAAAACATGTCATG--A
* * *
37419588 CATGTTTTGTT-GGGCATTAGGGA-GAAAT-AGTAAACA-AATAAGCATG-GGTAAGAAAAGAAT
320 CATGTTTTGTTAAGGCATGAGGGATGAAATGA-TAAA-ATAATAAG-ATGAGGGAAG-AAA-AAT
37419648 GAAAAAAAAAATGTGTGTGAGAGAGTAGC-ATACCCCATTGCCGTGCAA
380 --AAAAAAAAATGTGTGTGAGAGAGTAGCAATACCCCATTGCCGTGCAA
37419696 CCAAGAGGAG
Statistics
Matches: 380, Mismatches: 38, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
477 1 0.00
478 28 0.07
479 125 0.33
480 15 0.04
481 147 0.39
482 63 0.17
483 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (476 bp):
TGTGTGACAGCCCAAAATAGACCCTAGCCGGAATGTGGTTTCGGGACCACAAAACCGACGCATAA
AAATAATTTAAAATTTATTTCGATGCCTATAATATGTGTGTACTCATGTATGACATTTTTTGATA
ATTGAATTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAATACG
ATAGGGAAAGGGGTGATGACTAATTAAAGCATGCATGCAAAACAATGGACTTGCATGTCAAATTC
CCCTTTTTACAAGTGATGGCCGGCCATGACAAAGAATTATGGGAGAAAACATGTCATGACATGTT
TTGTTAAGGCATGAGGGATGAAATGATAAAATAATAAGATGAGGGAAGAAAAATAAAAAAAAATG
TGTGTGAGAGAGTAGCAATACCCCATTGCCGTGCAAGTGAAAGAAAAACAAAAAAAAAATTGTTC
ATCCTTGTTCTCTCCTTCTTT
Found at i:37421053 original size:40 final size:40
Alignment explanation
Indices: 37420960--37421110 Score: 125
Period size: 40 Copynumber: 3.8 Consensus size: 40
37420950 AATAGAATGA
* * *
37420960 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
37421000 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
* *
37421041 -ATCTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
37421080 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
37421111 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.06
40 77 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:37421124 original size:40 final size:40
Alignment explanation
Indices: 37420997--37421126 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
37420987 ATGCTGGAAA
* * * *
37420997 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * * **
37421037 CTACATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
37421077 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
37421117 TTATATCCGG
1 TTATATCCGG
37421127 TTATATTCCG
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:37423726 original size:40 final size:40
Alignment explanation
Indices: 37423667--37423873 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
37423657 CAATTGAATG
* * * *
37423667 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37423707 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37423746 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37423786 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
37423826 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37423866 ATATCCGG
1 ATATCCGG
37423874 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 33 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37423846 original size:80 final size:79
Alignment explanation
Indices: 37423667--37423873 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
37423657 CAATTGAATG
* * ** * * *
37423667 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
37423732 TTGTGCTAGTGACC
66 TTGTGCAAGTGACC
* * * *
37423746 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
**
37423811 TTTGTGCAAGTCGTTC
66 -TTGTGCAAGT-GACC
* *
37423827 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37423874 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 54 0.50
80 52 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
TTGTGCAAGTGACC
Found at i:37435952 original size:36 final size:36
Alignment explanation
Indices: 37435905--37435976 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37435895 AAATGATATG
37435905 TGATTGCCAAATGTGATTGTTAAGTGAATAATATTA
1 TGATTGCCAAATGTGATTGTTAAGTGAATAATATTA
37435941 TGATTGCCAAATGTGATTGTTAAGTGAATAATATTA
1 TGATTGCCAAATGTGATTGTTAAGTGAATAATATTA
37435977 GTTAAGTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (36 bp):
TGATTGCCAAATGTGATTGTTAAGTGAATAATATTA
Found at i:37439386 original size:40 final size:40
Alignment explanation
Indices: 37439342--37439693 Score: 578
Period size: 40 Copynumber: 8.8 Consensus size: 40
37439332 GAGAATTGAG
*
37439342 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
37439382 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
37439422 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
37439462 AGTGATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
37439502 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
37439542 AGTGATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
37439582 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
37439622 AGTGATGTATCCGGACTAAGTTCTGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
** * *
37439662 AGTGATGTATCCGGGTTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
37439694 ATCATGCTGG
Statistics
Matches: 289, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:37445359 original size:40 final size:38
Alignment explanation
Indices: 37445293--37445515 Score: 157
Period size: 40 Copynumber: 5.6 Consensus size: 38
37445283 AAATTGAATG
*
37445293 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TGCTGGAAATT
* * ****
37445332 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TGCTGGAAATT
* **
37445372 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT--TGCTG-GAAATT
* *
37445412 CTATCCGGGCTAAGACCCGAAGGCATTTG-TGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGCTGGAAAT--T
*
37445451 GATATCCGGGCTAAGACCCGAAGGCATTTG-TGCAAATCGT
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGCTGGAAAT--T
* * *
37445491 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
37445516 CTTGGTGCGG
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 17 0.11
40 132 0.86
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGCTGGAAATT
Found at i:37445497 original size:80 final size:79
Alignment explanation
Indices: 37445291--37445515 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 79
37445281 AGAAATTGAA
* *
37445291 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT-TATATCCGGGTTAAGACCCGAAG
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCTATATCCGGGTTAAGACCCGAAG
* * *
37445354 GCAATTGTGCTAGTGGC
63 GCAATTGTGCAAATCGC
* * * * * *
37445371 T-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC--TATATCCGGGTTAAGACCCGAAGG
*
37445435 CATTTGTGCAAATCG-
64 CAATTGTGCAAATCGC
* *
37445450 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-T-ATATCCGGGTTAAGACCCGAAGG
37445515 C
64 C
37445516 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
77 4 0.03
78 1 0.01
79 18 0.15
80 95 0.81
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCTATATCCGGGTTAAGACCCGAAGGCA
ATTGTGCAAATCGC
Found at i:37445524 original size:120 final size:119
Alignment explanation
Indices: 37445294--37445524 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
37445284 AATTGAATGA
* *
37445294 TATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 TATCCGGGCTAAGCCCGAAGACAATTATGCTGCAAATTATATCCGGGCTAAGACCCGAAGGCAAT
* * *
37445359 TGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
66 TGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
*
37445413 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGTGATATCCGGGCTAAGACCCGAAGG
1 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGCAAAT--T-ATATCCGGGCTAAGACCCGAAGG
* * * * * * *
37445475 CATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCG
62 CAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCG
37445525 GGTTACCATA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
117 6 0.06
118 2 0.02
119 18 0.19
120 68 0.72
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (119 bp):
TATCCGGGCTAAGCCCGAAGACAATTATGCTGCAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
Found at i:37445540 original size:120 final size:120
Alignment explanation
Indices: 37445332--37445555 Score: 263
Period size: 120 Copynumber: 1.9 Consensus size: 120
37445322 GCTGGAAATT
* * * *
37445332 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
* *
37445397 TTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
66 TTCGTGCGAGTCATCCTAACCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
* * * * *
37445452 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * * * *
37445516 CTTGGTGCGGGTTA-CCATAACCGGGCTATGTCCCGAAGGC
65 ATTCGTGCGAGTCATCC-TAACCGGGCTAAGACCCGAAGGC
37445556 GATTGATCGA
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
119 2 0.02
120 83 0.98
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCCTAACCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
Found at i:37463485 original size:20 final size:20
Alignment explanation
Indices: 37463443--37463485 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
37463433 TTATCTATGA
* * *
37463443 ATAACTTTTCATTTTCTACC
1 ATAAATTTTAATTTTCCACC
*
37463463 ATAAATTTTAATTTTCCAGC
1 ATAAATTTTAATTTTCCACC
37463483 ATA
1 ATA
37463486 TTCATCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAAATTTTAATTTTCCACC
Found at i:37465478 original size:94 final size:94
Alignment explanation
Indices: 37465359--37465632 Score: 512
Period size: 94 Copynumber: 2.9 Consensus size: 94
37465349 TGACAATAGT
* * *
37465359 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATATGGT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
*
37465424 GAATGTGAAAGTGTATGTATAATAAGGCC
66 GAATGTGAAAGTGTATGTATAATAAAGCC
37465453 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
37465518 GAATGTGAAAGTGTATGTATAATAAAGCC
66 GAATGTGAAAGTGTATGTATAATAAAGCC
37465547 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
37465612 GAATGTGAAAGTGTATGTATA
66 GAATGTGAAAGTGTATGTATA
37465633 TGTGGTAAAG
Statistics
Matches: 176, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 176 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGT
GAATGTGAAAGTGTATGTATAATAAAGCC
Found at i:37465592 original size:143 final size:140
Alignment explanation
Indices: 37465359--37465651 Score: 435
Period size: 143 Copynumber: 2.0 Consensus size: 140
37465349 TGACAATAGT
* *
37465359 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATATGGT
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA---GATAAAGCCTAATGGCCGATATGAT
*
37465424 GAATGTGAAAGTGTATGTATAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
63 GAATGTGAAAGTGTATATATAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
37465489 ATGTGATAAGGCC
128 ATGTGATAAAGCC
*
37465502 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA-ATAAAGCCTAATGGCCGATGTGATGAA
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATAGATAAAGCCTAATGGCCGATATGATGAA
* *
37465566 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
66 TGTGAAAGTGTATATATA----ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37465631 TATGTGGTAAAGCC
127 TATGTGATAAAGCC
*
37465645 GAATGGC
1 TAATGGC
37465652 TAATGTGAAT
Statistics
Matches: 137, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
139 41 0.30
143 96 0.70
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (140 bp):
TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATAGATAAAGCCTAATGGCCGATATGATGAA
TGTGAAAGTGTATATATAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
TGATAAAGCC
Found at i:37465658 original size:49 final size:49
Alignment explanation
Indices: 37465359--37465651 Score: 449
Period size: 49 Copynumber: 6.1 Consensus size: 49
37465349 TGACAATAGT
37465359 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
*
37465408 TAATGGCCGATATGGTGAATGTGAAAGTGTATGTATA----ATAAGGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
* *
37465453 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
*
37465502 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA----ATAAAGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
* *
37465547 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
* *
37465596 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGGTAAAGCC
1 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
*
37465645 GAATGGC
1 TAATGGC
37465652 TAATGTGAAT
Statistics
Matches: 221, Mismatches: 15, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
45 84 0.38
49 137 0.62
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
Found at i:37465756 original size:37 final size:37
Alignment explanation
Indices: 37465706--37465790 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
37465696 GAAATATGTT
*
37465706 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
37465743 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
37465780 CCGGGTAAGAC
1 CCGGGTAAGAC
37465791 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:37475594 original size:48 final size:48
Alignment explanation
Indices: 37475476--37475790 Score: 418
Period size: 48 Copynumber: 6.6 Consensus size: 48
37475466 ATCGTAATGA
* **
37475476 CATGTAAGACCATGTCTGGGACATGGAATTAACATCGATATGTGAT-C
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
* * *
37475523 TATGTAATACCATGTCTGAGACATGGCATTGGCATCGATATGTGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
* *
37475571 CATGTAAGACCATGTCTGAGACATGGCATTGGCATCGGTATGTGAT-C
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
37475618 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
* * *
37475666 CATGTAAGGCCATGTTTGGGACATGGCATTGGCATCAATATGTGATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
** * * * * * *
37475714 CATGTAAGATAATATCTGGGATACGACATTGGCATCGTTATGTGATTC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
** *
37475762 TGTGTAAGACCATGTTTGGGACATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
37475791 CGATATGAGA
Statistics
Matches: 232, Mismatches: 34, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
47 85 0.37
48 147 0.63
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCC
Found at i:37475641 original size:95 final size:95
Alignment explanation
Indices: 37475476--37475790 Score: 423
Period size: 95 Copynumber: 3.3 Consensus size: 95
37475466 ATCGTAATGA
* ** * *
37475476 CATGTAAGACCATGTCTGGGACATGGAATTAACATCGATATGTGATCTATGTAATACCATGTCTG
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCATGTAAGACCATGTCTG
*
37475541 AGACATGGCATTGGCATCGATATGTGATCC
66 GGACATGGCATTGGCATCGATATGTGATCC
* *
37475571 CATGTAAGACCATGTCTGAGACATGGCATTGGCATCGGTATGTGATCCATGTAAGACCATGTCTG
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCATGTAAGACCATGTCTG
37475636 GGACATGGCATTGGCATCGATATGTGATCC
66 GGACATGGCATTGGCATCGATATGTGATCC
* * * ** *
37475666 CATGTAAGGCCATGTTTGGGACATGGCATTGGCATCAATATGTGATCCCATGTAAGATAATATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT-CCATGTAAGACCATGTCT
* * * * *
37475731 GGGATACGACATTGGCATCGTTATGTGATTC
65 GGGACATGGCATTGGCATCGATATGTGATCC
** *
37475762 TGTGTAAGACCATGTTTGGGACATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
37475791 CGATATGAGA
Statistics
Matches: 195, Mismatches: 24, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
95 128 0.66
96 67 0.34
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (95 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCATGTAAGACCATGTCTG
GGACATGGCATTGGCATCGATATGTGATCC
Found at i:37481809 original size:39 final size:39
Alignment explanation
Indices: 37481755--37481898 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
37481745 GAATGTTCGA
*
37481755 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
37481794 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37481833 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37481872 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
37481899 CTTTGTGCGG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 85 0.90
40 9 0.10
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:37481845 original size:78 final size:79
Alignment explanation
Indices: 37481756--37481937 Score: 258
Period size: 78 Copynumber: 2.3 Consensus size: 79
37481746 AATGTTCGAG
*
37481756 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
37481820 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
37481834 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
37481899 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
37481913 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
37481938 TGTTTGAACG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 52 0.57
79 32 0.35
80 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:37489827 original size:39 final size:39
Alignment explanation
Indices: 37489773--37489916 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
37489763 GAATGTTCGA
37489773 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
37489812 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37489851 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
37489890 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
37489917 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:37489863 original size:78 final size:79
Alignment explanation
Indices: 37489774--37489956 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
37489764 AATGTTCGAG
37489774 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
37489838 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
37489852 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
37489917 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
37489931 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
37489957 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:37492359 original size:33 final size:33
Alignment explanation
Indices: 37492322--37492409 Score: 124
Period size: 33 Copynumber: 2.7 Consensus size: 33
37492312 ACTCGTAGTG
* *
37492322 CCATAACCTAGTTATGGTCTTATCATTAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
* * *
37492355 CCATAGCCCAGCTATGGTCTTATGATCAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
37492388 CCAT-ACCCAGTTATGGTCTTAT
1 CCATAACCCAGTTATGGTCTTAT
37492410 ATTTAATCAC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 16 0.33
33 32 0.67
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (33 bp):
CCATAACCCAGTTATGGTCTTATCATCAGATTT
Found at i:37492900 original size:43 final size:43
Alignment explanation
Indices: 37492852--37492934 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
37492842 AGTTATTCAT
37492852 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
*
37492895 TAGCACATATTTCAATTCTAATTCACTTCACAATTTATAC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATAC
37492935 CCCTCAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.40
Consensus pattern (43 bp):
TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
Found at i:37493851 original size:7 final size:7
Alignment explanation
Indices: 37493839--37493864 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37493829 CATTTAACTT
37493839 ATAAATA
1 ATAAATA
37493846 ATAAATA
1 ATAAATA
37493853 ATAAATA
1 ATAAATA
37493860 ATAAA
1 ATAAA
37493865 ATTTTTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:37497747 original size:20 final size:20
Alignment explanation
Indices: 37497708--37497747 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37497698 AAACTTCTTC
* *
37497708 ACTTACTCACTTACTGAAAT
1 ACTTACTCACTTAATCAAAT
*
37497728 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37497748 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.38
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37498128 original size:55 final size:55
Alignment explanation
Indices: 37498034--37498165 Score: 153
Period size: 55 Copynumber: 2.4 Consensus size: 55
37498024 TTGCCTTATG
* * *
37498034 ACCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGAAA-CTTATCAA-T
1 ACCATGCCTTGGCATGGTCTTACATGAGACCTTTGCC-T-TAGAAACCTTACCAATT
* * * *
37498089 GCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTAGAAACCTTACCAATT
1 ACCATGCCTTGGCATGGTCTTACATGAGA-CCTTTGCCTTAGAAACCTTACCAATT
37498144 ACCATGCCTTGGCATGGTCTTA
1 ACCATGCCTTGGCATGGTCTTA
37498166 TGGTATCCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
53 6 0.09
54 8 0.12
55 48 0.75
56 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (55 bp):
ACCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTAGAAACCTTACCAATT
Found at i:37502873 original size:28 final size:28
Alignment explanation
Indices: 37502808--37502879 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 28
37502798 ATAGTGAATC
*
37502808 CGCACACTTAGTGCTATATGTATTCAACT
1 CGCACACTTAGTGCTATA-GTAATCAACT
37502837 CGCACACTTAGTGCTATA-TAATCGAACT
1 CGCACACTTAGTGCTATAGTAATC-AACT
37502865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37502880 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 4 0.10
28 19 0.46
29 18 0.44
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGTAATCAACT
Found at i:37509163 original size:47 final size:47
Alignment explanation
Indices: 37509105--37509683 Score: 960
Period size: 47 Copynumber: 12.3 Consensus size: 47
37509095 GTATGAGATA
* **
37509105 TATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
37509152 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
37509199 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
37509246 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
37509293 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
37509340 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
37509387 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
37509434 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
37509481 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
37509528 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
37509575 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
37509622 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
37509669 TATAAATGTGATAAG
1 TATATATGTGATAAG
37509684 TCCCGAAGGG
Statistics
Matches: 503, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 503 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:37509860 original size:37 final size:37
Alignment explanation
Indices: 37509801--37509883 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
37509791 CCGAGCTCTA
* *
37509801 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
37509838 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
37509875 AAGCCCCGA
1 AAGACCCGA
37509884 ACTAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:37514530 original size:24 final size:24
Alignment explanation
Indices: 37514498--37514560 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
37514488 AATCTCAAAT
37514498 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37514522 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37514546 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
37514561 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37523280 original size:28 final size:28
Alignment explanation
Indices: 37523217--37523316 Score: 139
Period size: 27 Copynumber: 3.5 Consensus size: 28
37523207 ATAGTGAGTC
37523217 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37523244 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
37523272 CGCACACTTAGTGCTGTACAAATTTCAAACC
1 CGCACACTTAGTGCTATA-TAA--TCAAACT
37523303 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37523317 CAATCTCATG
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
27 23 0.35
28 21 0.32
29 2 0.03
31 20 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37526856 original size:130 final size:129
Alignment explanation
Indices: 37526617--37527004 Score: 481
Period size: 130 Copynumber: 3.0 Consensus size: 129
37526607 TAATTACTCA
* * * *
37526617 TTTAAAAATTCTTTAAAACAAAGGCAATACTCAGTGTTTGGCAATTCGAGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
* * * *
37526682 TGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAATCGAACATTCCTTTGGGATTACACTCATACT
66 TGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAAT-TAAAATTCCTTTGGGATTTCACTCATACT
*
37526747 TTTAAAAATTCTTTAAAACGAATGCAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
* * * * *
37526812 CGCTGGGTTGTGATTTCTCGTTTGTTTAAAACAATTAAAAATTCCTTTGGGTTTTCACTCATGCT
66 TGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATT-AAAATTCCTTTGGGATTTCACTCATACT
** * ** * * *
37526877 TTTAAAAATTCTCCAAAACGAAGGTAATGTTCGATATTTGGAAATTCGGGGAATTGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGCAATTC-GGGAATTGTGCCCTATC
* * * * *
37526942 GTGCTGGGTTGCGATCTC-CTGTTTGTTCAAAATAATCTAATATTCCTTTCGAATTTCACTCAT
65 GTGCTGGGTTGCGATTTCTC-GTTTGTTCAAAACAAT-TAAAATTCCTTTGGGATTTCACTCAT
37527005 GTTCTCCAAA
Statistics
Matches: 223, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
130 155 0.70
131 67 0.30
132 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
TGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATTAAAATTCCTTTGGGATTTCACTCATACT
Found at i:37526999 original size:131 final size:128
Alignment explanation
Indices: 37526617--37527092 Score: 476
Period size: 130 Copynumber: 3.7 Consensus size: 128
37526607 TAATTACTCA
* ** * *
37526617 TTTAAAAATTCTTTAAAACAAAGGCAATACTC-AGTGTTTGGCAATTCGAGAATCGTGCCCTATC
1 TTTAAAAATTC--TAAAACGAAGGCAATGTTCGA-TGTTTGGAAATTCGGGAATCGTGCCCTATC
* * * * *
37526681 GTGCTGGGTTGCGATTTCTCGTTTGTTGAAAACAATCGAACATTCCTTTGGGATTACACTCATAC
63 GTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCTAAAATTCCTTTGGGATTTCACTCATGC
37526746 T
128 T
* ** * * *
37526747 TTTAAAAATTCTTTAAAACGAATGCAATACTCGGTGTTTGGCAATTCGGGAATTGTGCCCTATCG
1 TTTAAAAATTC--TAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGAATCGTGCCCTATCG
* * * *
37526812 CGCTGGGTTGTGATTTCTCGTTTGTTTAAAACAAT-TAAAAATTCCTTTGGGTTTTCACTCATGC
64 TGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCT-AAAATTCCTTTGGGATTTCACTCATGC
37526876 T
128 T
* * *
37526877 TTTAAAAATTCTCCAAAACGAAGGTAATGTTCGATATTTGGAAATTCGGGGAATTGTGCCCTATC
1 TTTAAAAATTCT--AAAACGAAGGCAATGTTCGATGTTTGGAAATTC-GGGAATCGTGCCCTATC
* * * * *
37526942 GTGCTGGGTTGCGATCTC-CTGTTTGTTCAAAATAATCTAATATTCCTTTCGAATTTCACTCATG
63 GTGCTGGGTTGCGATTTCTC-GTTTGTTCAAAACAATCTAAAATTCCTTTGGGATTTCACTCATG
37527006 -T
127 CT
* ** * * * * *
37527007 TCTCCAAATTCTAAAA-TAAGGCAATGTTCGATGTCTAGAAATTCGAGGAGTCGTGCCCTATTGT
1 TTTAAAAATTCTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCG-GGAATCGTGCCCTATCGT
*
37527071 GCTGGGTTTCGATTTTCTCGTT
65 GCTGGGTTGCGA-TTTCTCGTT
37527093 GGACTAAATA
Statistics
Matches: 294, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
126 1 0.00
127 49 0.17
128 11 0.04
129 1 0.00
130 163 0.55
131 68 0.23
132 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (128 bp):
TTTAAAAATTCTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGAATCGTGCCCTATCGTG
CTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCTAAAATTCCTTTGGGATTTCACTCATGCT
Found at i:37538837 original size:133 final size:133
Alignment explanation
Indices: 37538593--37538897 Score: 441
Period size: 133 Copynumber: 2.3 Consensus size: 133
37538583 CTGATTCTAC
* * * * *
37538593 AGATCTTGTCT-CTCTGAAGTTGCAGCGAAGCAGATCGAAGACACTAAATCTAGTCTTCCTGAAG
1 AGATCTTGTCTCCT-TGAAGTTGCAGTGGAGCAAATCGAAAACACTAAATCTAGGCTTCCTGAAG
* * *
37538657 TCGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAATTTGTAGTGGAGTAGGCTGAAGA
65 TCGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGA
37538722 TTGT
130 TTGT
* ** * *
37538726 AGATCTTGCCTCCTTGAAGTTGCAGTGGAGCAAATCGAAAACGGTGAATCTTGGCTTCCTGAAGT
1 AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCAAATCGAAAACACTAAATCTAGGCTTCCTGAAGT
* *
37538791 TGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAATTGTAGTGGAGTAGGCCGAAGAT
66 CGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGAT
37538856 TGT
131 TGT
* *
37538859 AGATCTTGTCTCCATGAAGTTGCAGTGGAGCATATCGAA
1 AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCAAATCGAA
37538898 GTCACAATCC
Statistics
Matches: 153, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
133 151 0.99
134 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (133 bp):
AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCAAATCGAAAACACTAAATCTAGGCTTCCTGAAGT
CGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGAT
TGT
Found at i:37538955 original size:133 final size:132
Alignment explanation
Indices: 37538660--37538961 Score: 313
Period size: 133 Copynumber: 2.3 Consensus size: 132
37538650 CCTGAAGTCG
* * * * *
37538660 CAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAATTTGTAGTGGAGTAGGCTGAAGATTG
1 CAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGATTG
* ** * * * *
37538725 TAGATCTTGCCTCCTTGAAGTTGCAGTGGAGCAAATCGAAAACGGTGAATCTTGGCTTCCTGAAG
66 TAGATCTTGCCTCCATGAAGTTGCAGTGGAGCAAATCGAAAAC-GACAATCCTAGCTTCCTAAAA
*
37538790 TTG
130 TTA
* * * * *
37538793 CAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAATTGTAGTGGAGTAGGCCGAAGATTG
1 CAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGATTG
* * ** *
37538858 TAGATCTTGTCTCCATGAAGTTGCAGTGGAGCATATCGAAGTC-ACAATCCCTATC-TCTCTAAA
66 TAGATCTTGCCTCCATGAAGTTGCAGTGGAGCAAATCGAAAACGACAAT-CCTAGCTTC-CTAAA
37538921 ATTA
129 ATTA
* *
37538925 CAGTTG-AGCAGATTGGAGCAACAATTCCTATATCCCT
1 CAG-TGAAGCAGATTGAAGCAACAA-TCCTATCTCCCT
37538962 GAAGATGCAG
Statistics
Matches: 141, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
131 5 0.04
132 26 0.18
133 110 0.78
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (132 bp):
CAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGATTG
TAGATCTTGCCTCCATGAAGTTGCAGTGGAGCAAATCGAAAACGACAATCCTAGCTTCCTAAAAT
TA
Found at i:37540445 original size:2 final size:2
Alignment explanation
Indices: 37540438--37540480 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
37540428 CATATACATG
* * *
37540438 TA TA TA TA TA TC TA TA TA TG TA AA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37540480 T
1 T
37540481 CTATTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:37541054 original size:23 final size:25
Alignment explanation
Indices: 37541005--37541054 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
37540995 TAATTTAAAA
* *
37541005 ATTATTATTTTTGAATGTTTCTTTAT
1 ATTATTACTTTTG-ATGTTTCTATAT
37541031 ATTATTACTTTTG-TGTTT-TATAT
1 ATTATTACTTTTGATGTTTCTATAT
37541054 A
1 A
37541055 GTATCTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 5 0.23
24 5 0.23
26 12 0.55
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (25 bp):
ATTATTACTTTTGATGTTTCTATAT
Found at i:37541119 original size:2 final size:2
Alignment explanation
Indices: 37541112--37541141 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37541102 GACTAACTTA
37541112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37541142 TATTAATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37542014 original size:130 final size:130
Alignment explanation
Indices: 37541781--37542168 Score: 481
Period size: 130 Copynumber: 3.0 Consensus size: 130
37541771 TAATTACTCA
* * * *
37541781 TTTAAAATTTCTTTAAAATGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCATATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCG
* * * *
37541846 TGCTGGATTGTGATTTCTCATTTGTTCAAAAAAATCGAATATTTCTTTGGGATTACACTCATATT
66 TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
* * * *
37541911 TTTAAAAATTCTTTAAAACGAATGCAATACTCGGTGTTTGGAAATTTGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCG
* * * *
37541976 TGCTGGATTGCGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGGGTTTTCACTCATGCT
66 TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
* ** * * ** *
37542041 TTTAAAAACTCTCCAAAACGTAGGTAATGTTCGATGTTTGGCAATTCAGGGAATTGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATT-AGGGAATCGTGCCCTATC
* * * * * *
37542106 GTGCTGGGTTGCGATCTC-CTATTTGTTCAAAATAATTGAATATTCCTTTAGAATTTCACTCAT
65 GTGCTGGATTGCGATTTCTC-ATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCAT
37542169 GTTCTCAAAA
Statistics
Matches: 221, Mismatches: 35, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
130 152 0.69
131 69 0.31
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCG
TGCTGGATTGCGATTTCTCATTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATACT
Found at i:37556818 original size:55 final size:53
Alignment explanation
Indices: 37556669--37556883 Score: 174
Period size: 55 Copynumber: 4.0 Consensus size: 53
37556659 TACGTGGTAT
* * *
37556669 CCTTTTGAAACTTACCATTGCCATGTC-CGACATGGTCTTACATG-GTATCCTTG
1 CCTTATGAAACTTACAATT-CCATGTCTTGACATGGTCTTACATGAG-ATCCTTG
* * * *
37556722 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGA-CCTTTG
1 CCTTATGAAACTTA-CAATTCCATGTCTTGACATGGTCTTACATGAGATCC-TTG
* *
37556775 CCTTATAGAAACTTATCAATTCCATGTCTTGACATGGCCTTACATGATATCCTTG
1 CCTTAT-GAAACTTA-CAATTCCATGTCTTGACATGGTCTTACATGAGATCCTTG
* * *
37556830 CCTTA-GAAACCTTACCAATTGCTAT-TCCTTGGCATTGTCTTACATG-GTATCCTT
1 CCTTATGAAA-CTTA-CAATT-CCATGT-CTTGACATGGTCTTACATGAG-ATCCTT
37556884 AAACCCTAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 20
0.77 0.12 0.12
Matches are distributed among these distances:
52 13 0.10
53 38 0.29
54 12 0.09
55 66 0.50
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (53 bp):
CCTTATGAAACTTACAATTCCATGTCTTGACATGGTCTTACATGAGATCCTTG
Found at i:37556826 original size:108 final size:109
Alignment explanation
Indices: 37556675--37556875 Score: 275
Period size: 108 Copynumber: 1.9 Consensus size: 109
37556665 GTATCCTTTT
* * *
37556675 GAAACTTACCATTGCCATGTCCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCA
1 GAAACTTACAATTGCCATGTCCGACATGGCCTTACATGATATCCTTGCCTTA-GAAACCTCACCA
37556738 A-TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
65 ATTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
* *
37556782 GAAACTTATCAATT-CCATGTCTTGACATGGCCTTACATGATATCCTTGCCTTAGAAACCTTACC
1 GAAACTTA-CAATTGCCATGTC-CGACATGGCCTTACATGATATCCTTGCCTTAGAAACCTCACC
* * *
37556846 AATTGCTATTCCTTGGCATTGTCTTACATG
64 AATTGCCATGCCTTGGCATGGTCTTACATG
37556876 GTATCCTTAA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
107 16 0.20
108 34 0.42
109 7 0.09
110 24 0.30
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (109 bp):
GAAACTTACAATTGCCATGTCCGACATGGCCTTACATGATATCCTTGCCTTAGAAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
Found at i:37558319 original size:48 final size:48
Alignment explanation
Indices: 37558267--37558408 Score: 153
Period size: 48 Copynumber: 3.0 Consensus size: 48
37558257 CTCGTACACT
* **
37558267 AAGTGCTCATATCATGGCCCGAAGCCAACTCAATGTATTTCACACTCG
1 AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAACTCACACTCG
* * * * * *
37558315 AAGTGCTAATATCATGGTCCGAAACCAAATCAAT-AAAGCTCGCACCCG
1 AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAA-CTCACACTCG
* *
37558363 AAGTG-TCGATATCATGGCCCGAAGCCAAATTAATGTAAGTCACACT
1 AAGTGCTC-ATATCATGGCCCGAAGCCAAATCAATGTAACTCACACT
37558409 AGACATGGCC
Statistics
Matches: 74, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
47 2 0.03
48 70 0.95
49 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (48 bp):
AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAACTCACACTCG
Found at i:37564136 original size:25 final size:25
Alignment explanation
Indices: 37564082--37564202 Score: 70
Period size: 25 Copynumber: 4.8 Consensus size: 25
37564072 GGTTATTGAT
*
37564082 TTCAGCTCTTATGAGCTTACCAATA
1 TTCAGCTCATATGAGCTTACCAATA
* *
37564107 CTCAGCTCATATGAGCTTATC-ATCA
1 TTCAGCTCATATGAGCTTACCAAT-A
* * * **
37564132 TTCAGGT-AGGAGGAGCTTACCGTTA
1 TTCAGCTCA-TATGAGCTTACCAATA
* **
37564157 TTCAGCTCGA-AGGAGCTTACCGTTA
1 TTCAGCTC-ATATGAGCTTACCAATA
*
37564182 TTCAGCTCGA-AGGAGCTTACC
1 TTCAGCTC-ATATGAGCTTACC
37564203 GTTTACAGCT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
24 3 0.04
25 76 0.94
26 1 0.01
27 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (25 bp):
TTCAGCTCATATGAGCTTACCAATA
Found at i:37564162 original size:50 final size:50
Alignment explanation
Indices: 37564094--37564205 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 50
37564084 CAGCTCTTAT
** * * * *
37564094 GAGCTTACCAATACTCAGCTC-ATATGAGCTTATCATCATTCAGGTAGGAG
1 GAGCTTACCGTTACTCAGCTCGA-AGGAGCTTACCATCATTCAGCTAGAAG
* * * *
37564144 GAGCTTACCGTTATTCAGCTCGAAGGAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGTTACTCAGCTCGAAGGAGCTTACCATCATTCAGCTAGAAG
37564194 GAGCTTACCGTT
1 GAGCTTACCGTT
37564206 TACAGCTTGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (50 bp):
GAGCTTACCGTTACTCAGCTCGAAGGAGCTTACCATCATTCAGCTAGAAG
Found at i:37564203 original size:25 final size:25
Alignment explanation
Indices: 37564142--37564205 Score: 128
Period size: 25 Copynumber: 2.6 Consensus size: 25
37564132 TTCAGGTAGG
37564142 AGGAGCTTACCGTTATTCAGCTCGA
1 AGGAGCTTACCGTTATTCAGCTCGA
37564167 AGGAGCTTACCGTTATTCAGCTCGA
1 AGGAGCTTACCGTTATTCAGCTCGA
37564192 AGGAGCTTACCGTT
1 AGGAGCTTACCGTT
37564206 TACAGCTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
AGGAGCTTACCGTTATTCAGCTCGA
Found at i:37570999 original size:25 final size:26
Alignment explanation
Indices: 37570935--37570999 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
37570925 CTAATCGTCT
* *
37570935 TTCAGCTTGGTGGAGCTTACCGTTTA
1 TTCAGCTTGGAGGAGCTTACCGATTA
* *
37570961 TTCAGCTCGAAGGAGCTTACC-ATTA
1 TTCAGCTTGGAGGAGCTTACCGATTA
37570986 TTCAGCTTGGAGGA
1 TTCAGCTTGGAGGA
37571000 TTTTTCCGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 15 0.45
26 18 0.55
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (26 bp):
TTCAGCTTGGAGGAGCTTACCGATTA
Found at i:37573113 original size:16 final size:16
Alignment explanation
Indices: 37573092--37573123 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37573082 AAGCTAGGAA
37573092 ATGGCTTTATTTTATC
1 ATGGCTTTATTTTATC
37573108 ATGGCTTTATTTTATC
1 ATGGCTTTATTTTATC
37573124 CACACATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.56
Consensus pattern (16 bp):
ATGGCTTTATTTTATC
Found at i:37574860 original size:42 final size:42
Alignment explanation
Indices: 37574765--37574921 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 42
37574755 CCAACGTTCC
* * * *
37574765 AGACATGGTCTTACATGTAATCAAATATCGATGCCAATTTCCC
1 AGACATGGTCTTACACGAAATCAAATAT-GATGCCAATATCCT
* ***
37574808 AGACAGGGTCTTACACGAAATCAAATATGATGCTGCTATCCT
1 AGACATGGTCTTACACGAAATCAAATATGATGCCAATATCCT
* * *
37574850 AGACATGGTCTTACTCGTAAATCTCAAAT-CGATGCCAATGTCCT
1 AGACATGGTCTTACACG-AAA--TCAAATATGATGCCAATATCCT
** *
37574894 AGATGTGGTCTTACACGAAATCACATAT
1 AGACATGGTCTTACACGAAATCAAATAT
37574922 CAGAATCGTA
Statistics
Matches: 90, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
41 5 0.06
42 24 0.27
43 31 0.34
44 24 0.27
45 6 0.07
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAAATATGATGCCAATATCCT
Found at i:37574909 original size:86 final size:85
Alignment explanation
Indices: 37574765--37574921 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 85
37574755 CCAACGTTCC
*
37574765 AGACATGGTCTTACATGTAATCAAATATCGATGCCAATTTCCCAGACAGGGTCTTACACGAAATC
1 AGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATC
37574830 AAATATGATGCTGCTATCCT
66 AAATATGATGCTGCTATCCT
* * *
37574850 AGACATGGTCTTAC-TCGTAAATCTCAA-ATCGATGCCAATGTCCTAGA-TGTGGTCTTACACGA
1 AGACATGGTCTTACAT-GT-AATC-AAATATCGATGCCAATGTCCCAGACAG-GGTCTTACACGA
*
37574912 AATCACATAT
62 AATCAAATAT
37574922 CAGAATCGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
84 1 0.02
85 17 0.27
86 43 0.68
87 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (85 bp):
AGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATC
AAATATGATGCTGCTATCCT
Found at i:37576241 original size:17 final size:17
Alignment explanation
Indices: 37576219--37576253 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
37576209 CATCTTCGGG
*
37576219 CTCCCACGTAGCCTTTT
1 CTCCCACCTAGCCTTTT
37576236 CTCCCACCTAGCCTTTT
1 CTCCCACCTAGCCTTTT
37576253 C
1 C
37576254 AACACCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.46, G:0.09, T:0.34
Consensus pattern (17 bp):
CTCCCACCTAGCCTTTT
Found at i:37578035 original size:46 final size:44
Alignment explanation
Indices: 37577968--37578082 Score: 160
Period size: 46 Copynumber: 2.5 Consensus size: 44
37577958 TTTGTGTGCT
37577968 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAGATGT--GTC
*
37578014 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGTC
* *
37578058 AGTATAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
37578083 ACATTGGCAC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
44 11 0.17
45 17 0.27
46 36 0.56
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGTC
Found at i:37578228 original size:47 final size:49
Alignment explanation
Indices: 37577968--37578233 Score: 159
Period size: 46 Copynumber: 5.6 Consensus size: 49
37577958 TTTGTGTGCT
* * * *
37577968 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA---GATGTAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGATG--AGCC
* * *
37578014 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGA---GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACT-TGATTCGATGAGCC
* * * * * * *
37578058 AGTATAAGACCATGTCTAGGACATGACATTGGCAC-AGATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-ACTTGAT-T-CGATGAGCC
* *
37578108 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGATGAGCC
* ** * *
37578157 ACTGTAAGGTCATATCTGGGACATGGCATC-GACTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGATGAGCC
*
37578204 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
37578234 AGCATTATAC
Statistics
Matches: 175, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 47 0.27
47 28 0.16
48 7 0.04
49 31 0.18
50 33 0.19
51 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGATGAGCC
Found at i:37580983 original size:41 final size:41
Alignment explanation
Indices: 37580910--37581054 Score: 218
Period size: 41 Copynumber: 3.5 Consensus size: 41
37580900 ATCTGCTCCA
* * * ** *
37580910 CTACTCCACTGTAACTTCAGGGAAATAAGGTTTGTTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
*
37580951 CTGCTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
*
37580992 CTACTTTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
37581033 CTACTCTACTGCAACTTCAGAG
1 CTACTCTACTGCAACTTCAGAG
37581055 AGGTAAGATC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (41 bp):
CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
Found at i:37581775 original size:75 final size:76
Alignment explanation
Indices: 37581529--37581883 Score: 421
Period size: 77 Copynumber: 4.6 Consensus size: 76
37581519 AGAGACTAAA
* *
37581529 AGGCTCAACTCACTTCTCGCAATATGAGTCTGATTTTTTTTTTAAAAAAACATA-AATTAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGT-TGA---TTTTTTT--GAAAA-ATAGAATTAAAAAT
** *
37581593 ACCTCAGCATGT-ATCCCG
59 ACCTCAGTGTGTGA-CCTG
**
37581611 AGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTTTGAAAAATAGAATCTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAT-TAAAAATACCTCA
37581676 GTGTGTGACCTG
65 GTGTGTGACCTG
** * *
37581688 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACGTA-AATTGAAAATACCTCAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAATTAAAAATACCTCAG
* **
37581752 TGCGTGATTTG
66 TGTGTGACCTG
** *
37581763 AATCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGGAACTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATA-GAATTAAAAATACCTCA
* *
37581828 GCGTGTGACCCG
65 GTGTGTGACCTG
37581840 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
37581884 CAGGAATAAG
Statistics
Matches: 238, Mismatches: 30, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
75 66 0.28
76 22 0.09
77 113 0.47
78 8 0.03
81 3 0.01
82 26 0.11
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAATTAAAAATACCTCAG
TGTGTGACCTG
Found at i:37597452 original size:40 final size:40
Alignment explanation
Indices: 37597314--37597570 Score: 373
Period size: 40 Copynumber: 6.5 Consensus size: 40
37597304 TGGATGATAA
*
37597314 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
*
37597355 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37597395 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37597434 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37597474 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37597514 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
37597553 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37597571 TACTTGGCTT
Statistics
Matches: 202, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
38 15 0.07
39 54 0.27
40 105 0.52
41 24 0.12
42 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37604327 original size:40 final size:40
Alignment explanation
Indices: 37604267--37604450 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
37604257 TATTCGAATG
* * *
37604267 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * **
37604307 ATATCCAGACTAAGATCCGAAGGCATTTGTGGGAGTTG-CT
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
37604347 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * *
37604387 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
37604427 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGC
37604451 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:37607431 original size:40 final size:40
Alignment explanation
Indices: 37607386--37607551 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
37607376 CGGAATATAA
*
37607386 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAAC
* * * *
37607426 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
** *
37607466 CCGGATATAGCCACTAGCAC--ATTCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
** * * * * * *
37607504 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
37607544 CCGGATAT
1 CCGGATAT
37607552 CATTCAATTT
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 31 0.30
39 1 0.01
40 70 0.69
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:37611852 original size:12 final size:12
Alignment explanation
Indices: 37611835--37611867 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
37611825 AAAAACATAC
37611835 TATATATAAATA
1 TATATATAAATA
*
37611847 TATATATACATA
1 TATATATAAATA
37611859 TATA-ATAAA
1 TATATATAAA
37611868 ACATTCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
TATATATAAATA
Found at i:37612028 original size:3 final size:3
Alignment explanation
Indices: 37612014--37612267 Score: 196
Period size: 3 Copynumber: 82.3 Consensus size: 3
37612004 AAACATTCAC
* *
37612014 TAA TAT TAA TAA TAA TAA TAA TAA TAA TAC TAGA -AA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * **
37612059 CTAG TAA TAA TAA TACA TTAA GAA TAA TAA T-A TGT TAA TAA TAA TGAA
1 -TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
37612107 TTAG TGAA TTAA TAA CAA -AA CAG TAA GTAAA TAA -ACA CAA AAA TAA
1 -TAA T-AA -TAA TAA TAA TAA TAA TAA -T-AA TAA TA-A TAA TAA TAA
* * * * *
37612153 -AA T-A TAA TTA TAA TAG TAA CAT TAA CGAA GTAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -TAA TAA TAA TAA TAA
37612198 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37612246 TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
37612268 GGCAAAACTA
Statistics
Matches: 203, Mismatches: 30, Indels: 36
0.75 0.11 0.13
Matches are distributed among these distances:
2 10 0.05
3 170 0.84
4 17 0.08
5 6 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:37612098 original size:31 final size:31
Alignment explanation
Indices: 37612021--37612103 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
37612011 CACTAATATT
* *
37612021 AATAATAA-TAATAATAATAATACTAGAAAT
1 AATAATAACTAGTAATAATAATACTAGAAAG
**
37612051 AATAATAACTAGTAATAATAATAC-ATTAAG
1 AATAATAACTAGTAATAATAATACTAGAAAG
37612081 AATAATAA-TATGTTAATAATAAT
1 AATAATAACTA-G-TAATAATAAT
37612104 GAATTAGTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.04
30 20 0.43
31 24 0.52
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.33
Consensus pattern (31 bp):
AATAATAACTAGTAATAATAATACTAGAAAG
Found at i:37612820 original size:13 final size:13
Alignment explanation
Indices: 37612802--37612827 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37612792 AAAGGTACCC
37612802 TTTTTATTTTTAT
1 TTTTTATTTTTAT
37612815 TTTTTATTTTTAT
1 TTTTTATTTTTAT
37612828 ATGTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:37617071 original size:14 final size:14
Alignment explanation
Indices: 37617034--37617071 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
37617024 ATATATTAGT
37617034 TTTTATTTGTTATTA
1 TTTTATTT-TTATTA
37617049 TTATT-TTTTTATTA
1 TT-TTATTTTTATTA
37617063 TTTTATTTT
1 TTTTATTTT
37617072 CCTTTTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.10
14 12 0.57
15 5 0.24
16 2 0.10
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:37622259 original size:15 final size:15
Alignment explanation
Indices: 37622230--37622273 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
37622220 TCACATTGAT
37622230 AATAT-TTAAATATAA
1 AATATATTAAA-ATAA
*
37622245 AATATATTATAATAA
1 AATATATTAAAATAA
*
37622260 ATTATATTAAAATA
1 AATATATTAAAATA
37622274 TTTTATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATATATTAAAATAA
Found at i:37631298 original size:68 final size:66
Alignment explanation
Indices: 37631226--37631397 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
37631216 CATCATGTGT
* * *
37631226 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TA-TATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
37631289 TGTAG
62 TGTAG
** * *
37631294 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCATGT
37631359 AG
65 AG
* * * *
37631361 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
37631398 GGTGGTACCG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 26 0.29
65 2 0.02
66 17 0.19
67 32 0.36
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATGTA
G
Found at i:37631330 original size:64 final size:64
Alignment explanation
Indices: 37631175--37631433 Score: 213
Period size: 68 Copynumber: 3.9 Consensus size: 64
37631165 TGGATGATAC
* ** * * *
37631175 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
37631238 CAAG
63 C--G
* *
37631242 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
37631307 G
64 G
* * * * *
37631308 GGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
37631373 CG
63 CG
* * * * *
37631375 AGATAAAT-TGGCTAGGTCACATGGGTGGTACCGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTA-CTATGTGTACACCATGTAG-ACAAGAGAGC
37631434 CGAACTATAT
Statistics
Matches: 158, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 27 0.17
65 2 0.01
66 22 0.14
67 37 0.23
68 49 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:37634482 original size:27 final size:28
Alignment explanation
Indices: 37634444--37634497 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
37634434 TATAATTCTG
* *
37634444 AAACTGTATCTGT-TTGGGCTAAGGCCC
1 AAACTGAATCTGTAATGGGCTAAGGCCC
*
37634471 AAACTGAATCTGTAATGGGCTCAGGCC
1 AAACTGAATCTGTAATGGGCTAAGGCC
37634498 AGCCTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (28 bp):
AAACTGAATCTGTAATGGGCTAAGGCCC
Found at i:37644800 original size:30 final size:30
Alignment explanation
Indices: 37644743--37644801 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37644733 CATAAATCAT
* *
37644743 ACTTTTACAAATTTACATTTTGACCCCTAA
1 ACTTTTACAAATTTAAATTTAGACCCCTAA
*
37644773 ACTTTTACATATTTATAATTTAG-CCCCTA
1 ACTTTTACAAATTTA-AATTTAGACCCCTA
37644802 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.42
Consensus pattern (30 bp):
ACTTTTACAAATTTAAATTTAGACCCCTAA
Found at i:37649715 original size:13 final size:13
Alignment explanation
Indices: 37649694--37649733 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
37649684 AAAGTAATTG
*
37649694 CACACGGGCGTTT
1 CACACGGGCGTGT
*
37649707 CACATGGGCGTGT
1 CACACGGGCGTGT
*
37649720 CACACGGGTGTGT
1 CACACGGGCGTGT
37649733 C
1 C
37649734 CTTGCCGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:37660232 original size:39 final size:39
Alignment explanation
Indices: 37660189--37660300 Score: 170
Period size: 39 Copynumber: 2.8 Consensus size: 39
37660179 GTGCGAATTG
37660189 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
37660228 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
37660267 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
37660301 TGGTTACCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
39 50 0.76
40 16 0.24
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:37668049 original size:39 final size:39
Alignment explanation
Indices: 37667995--37668157 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
37667985 TGTGTATGAA
37667995 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
37668034 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
37668073 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
37668112 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
37668152 TGTGCG
1 TGTGCG
37668158 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:37668173 original size:40 final size:39
Alignment explanation
Indices: 37667995--37668187 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
37667985 TGTGTATGAA
* *
37667995 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
37668034 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
37668073 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
37668112 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
37668152 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
37668188 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:37672280 original size:13 final size:13
Alignment explanation
Indices: 37672262--37672286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37672252 AGTAATCACG
37672262 CACGGGCGTGTCA
1 CACGGGCGTGTCA
37672275 CACGGGCGTGTC
1 CACGGGCGTGTC
37672287 CCTGCCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:37675497 original size:40 final size:40
Alignment explanation
Indices: 37675452--37675618 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
37675442 CGGAATATAA
37675452 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37675492 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37675532 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37675572 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37675611 CCGGATAT
1 CCGGATAT
37675619 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37675602 original size:80 final size:79
Alignment explanation
Indices: 37675468--37675618 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
37675458 ATAATCACGT
*
37675468 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
37675533 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
37675548 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
37675611 CCGGATAT
64 CCGGATAT
37675619 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:37684621 original size:93 final size:93
Alignment explanation
Indices: 37684509--37684679 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37684499 GCCCATAAGT
* *
37684509 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37684574 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37684602 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37684667 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37684680 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37684676 original size:46 final size:46
Alignment explanation
Indices: 37684501--37684676 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
37684491 TGTAACCCGC
* * *
37684501 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37684547 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37684597 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37684640 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37684677 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37687087 original size:30 final size:30
Alignment explanation
Indices: 37687043--37687131 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37687033 CAAAGATAAC
37687043 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37687072 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37687102 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37687132 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37687091 original size:15 final size:15
Alignment explanation
Indices: 37687043--37687122 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37687033 CAAAGATAAC
*
37687043 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37687057 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37687072 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37687087 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37687102 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37687117 AAGAAA
1 AAGAAA
37687123 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Done.