Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 142 of 444
Found at i:38027177 original size:47 final size:47
Alignment explanation
Indices: 38026767--38027187 Score: 617
Period size: 47 Copynumber: 9.0 Consensus size: 47
38026757 TTTCACACTA
* * * *
38026767 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
38026814 GCCATTCGACCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
38026861 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
38026908 GCCATTCGGCCTCATCACATATATGCATGTTCATATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
38026955 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
38027002 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
38027049 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
38027096 GCCATTCGGCCTTATCATACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* ** *
38027143 GCCATTCGGCCTTATCACATATATACACATTCACATCCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
38027188 AAAATCCTAA
Statistics
Matches: 336, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 336 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:38027187 original size:94 final size:94
Alignment explanation
Indices: 38026767--38027166 Score: 683
Period size: 94 Copynumber: 4.3 Consensus size: 94
38026757 TTTCACACTA
* * *
38026767 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
38026832 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * *
38026861 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * * *
38026926 ATATATGCATGTTCATATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
38026955 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
38027020 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* *
38027049 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
38027114 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
38027143 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
38027167 ACACATTCAC
Statistics
Matches: 285, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 285 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:38027187 original size:141 final size:141
Alignment explanation
Indices: 38026767--38027166 Score: 683
Period size: 141 Copynumber: 2.8 Consensus size: 141
38026757 TTTCACACTA
* * *
38026767 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
38026832 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACAT
66 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACAT
38026897 TCATCACATTG
131 TCATCACATTG
* * *
38026908 GCCATTCGGCCTCATCACATATATGCATGTTCATATTCATCACATAGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * * * *
38026973 ATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
66 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACAT
38027038 TCATCACATTG
131 TCATCACATTG
* *
38027049 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
38027114 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
38027167 ACACATTCAC
Statistics
Matches: 238, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 238 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACAT
TCATCACATTG
Found at i:38035599 original size:17 final size:18
Alignment explanation
Indices: 38035572--38035605 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
38035562 AATTAAATAT
38035572 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
38035590 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
38035606 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:38035862 original size:130 final size:132
Alignment explanation
Indices: 38035625--38035868 Score: 320
Period size: 130 Copynumber: 1.9 Consensus size: 132
38035615 ATGAAATATG
* * *
38035625 ATTAAAACTAATCCTAATTCTATGCTAAATTGATAAAAATTAATATATAAATTATAATAGATATA
1 ATTAAAACTAATCATAACTCTATGATAAATTGATAAAAATTAATATAT-AATTATAATAGATATA
*
38035690 ATTATATATTAAAGATTATCATCTTATTATTATTTGAAAAAAA-ATTTATCAAATAAAATATGAT
65 ATTATATATTAAAGATTATCATCTTATTATTATTTAAAAAAAACATTTATCAAATAAAATATGAT
38035754 TAA
130 TAA
* * * *
38035757 ATTAACACTAATCATAACTCTAT-ATAAAGTTGATGATAATTAATATAT-ATTATAATAGTTATA
1 ATTAAAACTAATCATAACTCTATGATAAA-TTGATAAAAATTAATATATAATTATAATAGATATA
*
38035820 ATTATATATTAATA-ATTATCATCTT-TTTTTA-TTAAACTAAAAACATTTA
65 ATTATATATTAA-AGATTATCATCTTATTATTATTTAAA--AAAAACATTTA
38035869 CTCTAGAAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
128 4 0.04
129 5 0.05
130 42 0.43
131 10 0.10
132 37 0.38
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (132 bp):
ATTAAAACTAATCATAACTCTATGATAAATTGATAAAAATTAATATATAATTATAATAGATATAA
TTATATATTAAAGATTATCATCTTATTATTATTTAAAAAAAACATTTATCAAATAAAATATGATT
AA
Found at i:38035944 original size:30 final size:30
Alignment explanation
Indices: 38035889--38035945 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
38035879 CTTTTGAAAA
* *
38035889 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCACCAAATTTTTAT
38035919 TATTTACAAAAAGA-GCTACCAAATTTT
1 TATTTACAAAAAGAGGC-ACCAAATTTT
38035946 AAAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCACCAAATTTTTAT
Found at i:38043036 original size:57 final size:57
Alignment explanation
Indices: 38042897--38043013 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
38042887 TGAAAGGAGA
38042897 AAGTGAGAGAGTAGAGAAGAGATGTGAATGAATGAGGGATGCTTTAAATGATCAGCC
1 AAGTGAGAGAGTAGAGAAGAGATGTGAATGAATGAGGGATGCTTTAAATGATCAGCC
38042954 AAGTGAGAGAGTAGAGAAGAGATGTGAATGAATGAGGGATGCTTTAAATGATCAGCC
1 AAGTGAGAGAGTAGAGAAGAGATGTGAATGAATGAGGGATGCTTTAAATGATCAGCC
38043011 AAG
1 AAG
38043014 GGGGGTTTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21
Consensus pattern (57 bp):
AAGTGAGAGAGTAGAGAAGAGATGTGAATGAATGAGGGATGCTTTAAATGATCAGCC
Found at i:38051437 original size:46 final size:46
Alignment explanation
Indices: 38051381--38051559 Score: 220
Period size: 46 Copynumber: 3.9 Consensus size: 46
38051371 GGATATTTGG
38051381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
38051427 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
*
38051473 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
38051520 ACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38051560 GCGGGTTACA
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:38051539 original size:93 final size:93
Alignment explanation
Indices: 38051380--38051552 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
38051370 GGGATATTTG
* **
38051380 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
38051445 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
38051473 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
38051538 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
38051553 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:38054511 original size:15 final size:15
Alignment explanation
Indices: 38054472--38054551 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
38054462 GTATCTTGGG
*
38054472 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
38054487 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
38054502 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
38054517 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
38054532 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
38054546 TTTCTT
1 TTTCTT
38054552 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:38054541 original size:30 final size:30
Alignment explanation
Indices: 38054463--38054550 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
38054453 CATAGTATCG
* * *
38054463 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
38054493 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
38054523 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
38054551 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:38056978 original size:46 final size:46
Alignment explanation
Indices: 38056927--38057103 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
38056917 GATATTTGGG
38056927 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * * *
38056973 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GC
* *
38057020 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * *
38057066 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38057104 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:38057086 original size:93 final size:93
Alignment explanation
Indices: 38056927--38057096 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
38056917 GATATTTGGG
* **
38056927 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
38056992 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* *
38057020 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
38057085 AGTCCGAGTTCG
66 AGTCCGAGTTCG
38057097 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:38062072 original size:43 final size:44
Alignment explanation
Indices: 38061973--38062082 Score: 129
Period size: 43 Copynumber: 2.5 Consensus size: 44
38061963 GACTTCGTGT
* *
38061973 AAGACCACATCTGGGACGTTGGCATCGATTTATGATTTACATGT
1 AAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACATGG
* *
38062017 AAGACC-CTGTCTGGGACAG-TGGTATCG-TTATGTGA-TTACATGG
1 AAGACCAC-GTCTGGGAC-GTTGGCATCGATT-TATGATTTACATGG
38062060 AAGACCACGTCTGGGACGTTGGC
1 AAGACCACGTCTGGGACGTTGGC
38062083 GTTGTATGAG
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
42 1 0.02
43 28 0.50
44 26 0.46
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (44 bp):
AAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACATGG
Found at i:38062445 original size:18 final size:18
Alignment explanation
Indices: 38062424--38062459 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
38062414 AATTTCATTG
*
38062424 AAATGATTTATTTGCTTA
1 AAATGATTTATTTCCTTA
38062442 AAATGATTTATTTCCTTA
1 AAATGATTTATTTCCTTA
38062460 TGACTTACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (18 bp):
AAATGATTTATTTCCTTA
Found at i:38074297 original size:55 final size:54
Alignment explanation
Indices: 38074210--38074464 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
38074200 ATTAGGGTTT
* *
38074210 AAGGATACCATGTAAGGCCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
38074265 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
38074320 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
38074373 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
38074422 AAGGATACCACGTAAGACCATGACAAGTCATGGGAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
38074465 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:38074416 original size:108 final size:110
Alignment explanation
Indices: 38074217--38074417 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
38074207 TTTAAGGATA
* *
38074217 CCATGTAAGGCCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
38074282 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
38074327 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
38074389 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
38074418 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:38074682 original size:16 final size:16
Alignment explanation
Indices: 38074661--38074691 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38074651 ATAAATTCGA
38074661 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
38074677 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
38074692 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:38082520 original size:43 final size:43
Alignment explanation
Indices: 38082455--38082621 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
38082445 AGCTCGTACA
* * * *
38082455 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATACCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
38082497 ATGCCACTATCCCAGACAGGGTCTTACACGTAATCGA-TTAACG
1 ATGCCAATACCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * *
38082540 ATGTCAATGCCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATACCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
38082583 ATGCCAATGCCCCAGACATGGTCTTACATGAAATCACAT
1 ATGCCAATACCCCAGACATGGTCTTACACGTAATCACAT
38082622 CTTTGTAACC
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
42 7 0.07
43 94 0.92
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATACCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:38086600 original size:40 final size:40
Alignment explanation
Indices: 38086482--38086628 Score: 113
Period size: 40 Copynumber: 3.7 Consensus size: 40
38086472 TGATATCTGG
* * *
38086482 GCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATCCG-
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAAACCGA
* * *
38086521 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAAACCGG
1 G-CTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAAACCGA
* ** *
38086562 GTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAACCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAAACCGA
* * *
38086602 GCTATGTCCCGAAGGCTTTTGAGCGAG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG
38086629 TTGCTATATC
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 75 0.86
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAAACCGA
Found at i:38092248 original size:16 final size:15
Alignment explanation
Indices: 38092222--38092256 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
38092212 TGACGTGAAT
38092222 AATATAAAATATTAA
1 AATATAAAATATTAA
*
38092237 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
38092253 AATA
1 AATA
38092257 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:38092445 original size:22 final size:24
Alignment explanation
Indices: 38092388--38092480 Score: 100
Period size: 24 Copynumber: 3.8 Consensus size: 24
38092378 TACATATAAA
* *
38092388 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
38092412 AAAAATACATACATAATATAAT-T
1 AAAAATATATACATAATATAATGT
*
38092435 -AAAATATATACATAAGATAACATGT
1 AAAAATATATACATAATAT-A-ATGT
*
38092460 AAAAATATATATATATATATA
1 AAAAATATATACATA-ATATA
38092481 TAAATAATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 16 0.28
23 2 0.04
24 21 0.37
25 1 0.02
26 14 0.25
27 3 0.05
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:38092512 original size:25 final size:25
Alignment explanation
Indices: 38092476--38092609 Score: 102
Period size: 25 Copynumber: 5.6 Consensus size: 25
38092466 ATATATATAT
*
38092476 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
38092501 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
38092526 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
38092550 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
38092572 AATATATATATAATATAATATT-AAG
1 -ATATATACATAATATAGTATTAAAG
*
38092597 AAATATA-ATAATA
1 ATATATACATAATA
38092610 ACAAAAAAGA
Statistics
Matches: 86, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 20 0.23
24 23 0.27
25 38 0.44
26 2 0.02
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:38092585 original size:24 final size:23
Alignment explanation
Indices: 38092558--38092609 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
38092548 AGAATATACC
*
38092558 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
38092582 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
38092605 TAATA
1 TAATA
38092610 ACAAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:38093098 original size:30 final size:30
Alignment explanation
Indices: 38093057--38093215 Score: 273
Period size: 30 Copynumber: 5.3 Consensus size: 30
38093047 TAGGTACAAG
38093057 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
38093087 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
38093117 TGGTGGTGGAGTAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
38093147 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
38093177 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
38093207 TGGTGGTGG
1 TGGTGGTGG
38093216 CAAAGGCTAA
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 119 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:38094001 original size:87 final size:87
Alignment explanation
Indices: 38093851--38094340 Score: 274
Period size: 87 Copynumber: 5.4 Consensus size: 87
38093841 TCCTGAGCTT
* * * *
38093851 AACTCATTTCTCGCGATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
*
38093916 GCTCAGCACGTGAGCCAAGGCTC
65 CCTCAGCACGTGAGCCAAGGCTC
* **
38093939 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-AAA-ATTTGTAAAACAGATTTTGAAAAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACA-TT-AAAAACAGAAATTGAAAAT
*
38094002 ACCTCGGCACGTGAGCCAAGGCTC
64 ACCTCAGCACGTGAGCCAAGGCTC
* * * * * * *
38094026 AACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAATTGAAAAAAATAAAAATAAAAA
1 AACTCACTTCTCGCAATATGAGTTGATTTTT-------A-AAACT---AAACATTAAAA-ACAGA
* ** * **
38094091 TCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTC
54 --AATTGAAAATACCTCAGCACGTGAGCCAAGGCTC
* * * ** *
38094127 AACTCACCTCTCGCAATATGAGTTGTTTTTTTTGACAAACATAAATTGAAAAAAAAAAGAAATTG
1 AACTCACTTCTCGCAATATGAGTTG--ATTTTT-A-AAAC-TAAA--CATTAAAAACAGAAATTG
* * * *
38094192 AAAATATCTCAG--CGTG-TCCTGAGGCTG
59 AAAATACCTCAGCACGTGAGCC-AAGGCTC
* * *
38094219 AACTCACCTATCGCAATATGAGTTGATTTTTTGGAAAAAC-AAA-ATTTGAAAAACAGAATTTGA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTT---AAAACTAAACA-TT-AAAAACAGAAATTGA
*** *
38094282 AAATACCTCAGTGTGTGAGTCAAGGCTC
60 AAATACCTCAGCACGTGAGCCAAGGCTC
** *
38094310 AACTCACCACTCGCAATATGAGCTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
38094341 TTTGAAACAC
Statistics
Matches: 318, Mismatches: 52, Indels: 62
0.74 0.12 0.14
Matches are distributed among these distances:
85 1 0.00
86 5 0.02
87 77 0.24
88 23 0.07
89 23 0.07
90 8 0.03
91 38 0.12
92 38 0.12
93 1 0.00
94 16 0.05
95 6 0.02
96 4 0.01
97 10 0.03
98 4 0.01
99 7 0.02
100 1 0.00
101 51 0.16
103 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (87 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATAC
CTCAGCACGTGAGCCAAGGCTC
Found at i:38094125 original size:101 final size:102
Alignment explanation
Indices: 38093994--38094181 Score: 281
Period size: 101 Copynumber: 1.8 Consensus size: 102
38093984 AAAACAGATT
*
38093994 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTTG-ATTTTTG
1 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGTATTTTTG
38094058 -CAAAGCATAAATTGAAAAAAATAAAAATAAAAATCAA
66 ACAAA-CATAAATTGAAAAAAATAAAAATAAAAATCAA
** * ** *
38094095 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTTT
1 TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-TATTTTT
38094160 GACAAACATAAATTGAAAAAAA
65 GACAAACATAAATTGAAAAAAA
38094182 AAAGAAATTG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
101 51 0.66
103 22 0.29
104 4 0.05
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (102 bp):
TTGAAAATACCTCGGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGTATTTTTG
ACAAACATAAATTGAAAAAAATAAAAATAAAAATCAA
Found at i:38094233 original size:92 final size:91
Alignment explanation
Indices: 38094093--38094450 Score: 374
Period size: 92 Copynumber: 3.9 Consensus size: 91
38094083 AATAAAAATC
* * * *
38094093 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTT
1 AATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTT
* *
38094157 TTTGACAA-ACATAAATTGAAAAAAAAAAGA
65 TTTGA-AACACAGAAATTG---AAAAACAGA
* * *
38094187 AATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTATCGCAATATGAGTTGA-TTTTT
1 AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTT
* *
38094250 TGGAAAAACA-AAATTTGAAAAACAGA
66 TTGAAACACAGAAA-TTGAAAAACAGA
* * ** *
38094276 ATTTGAAAATACCTCAGTGTGTGAGTCAAGGCTCAACTCACC-ACTCGCAATATGAGCTGATTTT
1 AATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTA-TCGCAATATGAGCTGATTTT
*
38094340 TTTTGAAACACAGAAATTGAAGAACAGA
64 TTTTGAAACACAGAAATTGAAAAACAGA
* * * * *
38094368 AATGGAAAACACCTCAGC--GT-CTTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTT
*
38094430 TTGAAAGACAGAAATTGAAAA
66 TTGAAACACAGAAATTGAAAA
38094451 TACCTCAACG
Statistics
Matches: 226, Mismatches: 29, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
88 54 0.24
89 28 0.12
90 4 0.02
91 33 0.15
92 84 0.37
93 3 0.01
94 20 0.09
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (91 bp):
AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTT
TTGAAACACAGAAATTGAAAAACAGA
Found at i:38094284 original size:13 final size:14
Alignment explanation
Indices: 38094252--38094284 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
38094242 TGATTTTTTG
38094252 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
38094266 GAAAAACAGAATTT
1 GAAAAACAAAATTT
38094280 GAAAA
1 GAAAA
38094285 TACCTCAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:38094325 original size:183 final size:179
Alignment explanation
Indices: 38094095--38094429 Score: 442
Period size: 183 Copynumber: 1.8 Consensus size: 179
38094085 TAAAAATCAA
* * * *
38094095 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTTT
1 TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
* * * * *
38094159 TGACAA-ACATAAATTGAAAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACT
66 TGA-AACACAGAAATTG---AAAAAAAGAAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACT
* *
38094223 CACCTATCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
125 CACCTATCACAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
*
38094278 TTGAAAATACCTCAGTGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * *
38094342 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCT
65 TTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCT
*
38094407 CTCACAATATGAGCTGATTTTTT
130 ATCACAATATGAGCTGATTTTTT
38094430 TTGAAAGACA
Statistics
Matches: 133, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
179 39 0.29
181 22 0.17
183 51 0.38
184 21 0.16
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (179 bp):
TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTA
TCACAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:38094623 original size:75 final size:75
Alignment explanation
Indices: 38094356--38095281 Score: 896
Period size: 75 Copynumber: 12.3 Consensus size: 75
38094346 AACACAGAAA
* * * * * *
38094356 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
38094419 GCTGATTTTTT
66 GTTGA-TTTTT
* * *
38094430 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
38094495 GTTGA--TTT
66 GTTGATTTTT
* * * * *
38094503 TTGACAAAA-AAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATG
1 TTGA-AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
38094567 AGTTGATTTTT
65 AGTTGATTTTT
* *
38094578 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
38094643 GTTGA--GTT
66 GTTGATTTTT
* * * * * * *
38094651 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
38094714 GTTGATTTTTT
66 GTTGA-TTTTT
* * *
38094725 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
38094790 GTTGGTTTTT
66 GTTGATTTTT
* * * *
38094800 TTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
38094865 GTTGATTTTG
66 GTTGATTTTT
*** * * *
38094875 ACAAACAGAGACAGAAATTGAAAATACCTTAGCACGTGAGCC-GAGGCTCAACTCACCTCTTGCA
1 TTGAA-A-A-ACAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCTCGCA
38094939 ATATGAGTTGATTTTT
60 ATATGAGTTGATTTTT
* * * * * * * *
38094955 TTG-ACAATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
38095019 GTTGATTCTT
66 GTTGATTTTT
* * * * * *
38095029 TTGAAAAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCCCGTAACAT
1 TTGAAAAACAGAAATTGAAAATACCTCAAC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
38095094 GAGTTGA--TTT
64 GAGTTGATTTTT
* * * * * * *
38095104 TTGACAAACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
38095169 GTTGATTTAAAAAA
66 GTTGATTT----TT
** * * * *
38095183 CAGACATAAAAACAGAAATTGAAAGTGA-TTCAACATGTGAGCC-AAGGCTCAACTCACCTCTCG
1 TTG----AAAAACAGAAATTGAAAAT-ACCTCAAC--GTG-TCCTGAGGCTCAACTCACCTCTCG
38095246 CAATATGAGTTGATTTTT
58 CAATATGAGTTGATTTTT
38095264 TTG-AAAACAGAAA-TGAAA
1 TTGAAAAACAGAAATTGAAA
38095282 CATCCACATA
Statistics
Matches: 711, Mismatches: 106, Indels: 69
0.80 0.12 0.08
Matches are distributed among these distances:
71 36 0.05
72 1 0.00
73 125 0.18
74 99 0.14
75 194 0.27
76 97 0.14
77 36 0.05
78 20 0.03
79 2 0.00
80 39 0.05
81 3 0.00
83 20 0.03
84 1 0.00
85 36 0.05
86 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:38094765 original size:222 final size:221
Alignment explanation
Indices: 38094356--38095176 Score: 958
Period size: 222 Copynumber: 3.7 Consensus size: 221
38094346 AACACAGAAA
* * * * *
38094356 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* * * * *
38094419 GCTGATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCT
66 GTTGA---TTTTTGACAA-ACAAAAATTGAAAATACCTCAGCGTG-CTCGAGGCTCAACTCACCT
* *
38094483 CTCGCAATATGAGTTGA--TTTTTGACAAAAAAAAATTGAAATTACCTCAGCATGTCCTGAGGCT
126 CTCGCAATATGAGTTGATTTTTTTGA-AAAAAGAAATTGAAATTACCTCAGCATGCCCTGAGGCT
*
38094546 CAACTCACCTATCGCAATATGAGTTGATTTTT
190 CAACTCACCTCTCGCAATATGAGTTGATTTTT
* **
38094578 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* * * * *
38094643 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGT-CTTGAGGTTCAACTCACCTATCGC
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGCTCGAGGCTCAACTCACCTCTCGC
* *
38094707 AATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 AATATGAGTTGA-TTTTTTTGAAAAA-AGAAATTGAAATTACCTCAGCATGCCCTGAGGCTCAAC
* *
38094772 TCACCTCTCACAATATGAGTTGGTTTTT
194 TCACCTCTCGCAATATGAGTTGATTTTT
* * *
38094800 TTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
*
38094865 GTTGA-TTTTGACAAACAGAGACAGAAATTGAAAATACCTTAGCACGTGAGC-CGAGGCTCAACT
66 GTTGATTTTTGACAAAC----A-A-AAATTGAAAATACCTCAG--CGT--GCTCGAGGCTCAACT
* * * *
38094928 CACCTCTTGCAATATGAGTTGATTTTTTTGACAATAGAAATTGCAATTACCTCAGCATGTCCC-G
121 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAGAAATTGAAATTACCTCAGCATG-CCCTG
* *
38094992 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTCTT
185 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * ** *
38095029 TTGAAAAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCCCGTAACAT
1 TTGAAAAACAGAAATTGAAAATACCTCAAC--GTGTCCTGAGGCTCAACTCACCTCTCACAATAT
** * *
38095094 GAGTTGATTTTTGACAAACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCC
64 GAGTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTG-CTCGAGGCTCAACTCACCTCT
*
38095159 CACAATATGAGTTGATTT
128 CGCAATATGAGTTGATTT
38095177 AAAAAACAGA
Statistics
Matches: 518, Mismatches: 57, Indels: 46
0.83 0.09 0.07
Matches are distributed among these distances:
219 33 0.06
221 43 0.08
222 157 0.30
223 2 0.00
224 73 0.14
225 1 0.00
226 17 0.03
227 16 0.03
228 1 0.00
229 85 0.16
230 14 0.03
231 64 0.12
232 12 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAGCGTGCTCGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAAAAGAAATTGAAATTACCTCAGCATGCCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTT
Found at i:38101022 original size:37 final size:37
Alignment explanation
Indices: 38100969--38101059 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
38100959 TATAAAAGAA
38100969 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
38101006 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
38101043 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
38101060 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:38101215 original size:49 final size:49
Alignment explanation
Indices: 38101155--38101369 Score: 394
Period size: 49 Copynumber: 4.4 Consensus size: 49
38101145 TCTTGCATTA
38101155 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
38101204 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCATCACATCA
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
38101253 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
38101302 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
38101351 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
38101370 CATATATGTA
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 159 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:38106523 original size:20 final size:20
Alignment explanation
Indices: 38106466--38106525 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
38106456 AATACTACAT
38106466 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
38106485 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
38106508 AAATATGTACATAATATA
1 AAATATGTACATAATATA
38106526 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:38106589 original size:2 final size:2
Alignment explanation
Indices: 38106582--38106650 Score: 56
Period size: 2 Copynumber: 35.5 Consensus size: 2
38106572 AACATGTAAA
* * *
38106582 AT AT AT AT AT AT AT AT AT AA AT A- AT AT AGT AT -T AA AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
*
38106623 AT AT AT A- AA AT AGT AT A- AT AT AT AT AT A
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A
38106651 CGTAATATAG
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
1 4 0.07
2 47 0.85
3 4 0.07
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (2 bp):
AT
Found at i:38106600 original size:37 final size:37
Alignment explanation
Indices: 38106557--38106629 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
38106547 TATGATTAAA
*
38106557 ATATATACATAAGATAACATGTAAA-ATATATATATAT
1 ATATATAAATAAGATAACAT-TAAAGATATATATATAT
* **
38106594 ATATATAAATAATATAGTATTAAAGATATATATATA
1 ATATATAAATAAGATAACATTAAAGATATATATATA
38106630 AAATAGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 4 0.13
37 27 0.87
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (37 bp):
ATATATAAATAAGATAACATTAAAGATATATATATAT
Found at i:38106630 original size:25 final size:24
Alignment explanation
Indices: 38106594--38106725 Score: 103
Period size: 25 Copynumber: 5.6 Consensus size: 24
38106584 ATATATATAT
*
38106594 ATATATAAATAATATAGTATTAAAG
1 ATATATATATAATATAGTATT-AAG
* *
38106619 ATATATATATAAAATAGTA-TAAT
1 ATATATATATAATATAGTATTAAG
* *
38106642 ATATATATACGTAATATAGAATTTAG
1 ATATATATA--TAATATAGTATTAAG
** * *
38106668 A-ATATACCTAATATATTA-AAAG
1 ATATATATATAATATAGTATTAAG
*
38106690 A-ATATATATAATATAATATTAAG
1 ATATATATATAATATAGTATTAAG
*
38106713 AAATATA-ATAATA
1 ATATATATATAATA
38106726 ACAAAAAAAG
Statistics
Matches: 85, Mismatches: 17, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
22 17 0.20
23 29 0.34
24 6 0.07
25 30 0.35
26 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATATATAATATAGTATTAAG
Found at i:38107221 original size:18 final size:18
Alignment explanation
Indices: 38107198--38107251 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
38107188 ACAAGTGGTG
38107198 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
38107216 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
38107228 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
38107246 GTGGAG
1 GTGGAG
38107252 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:38107234 original size:30 final size:30
Alignment explanation
Indices: 38107198--38107261 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
38107188 ACAAGTGGTG
38107198 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
* *
38107228 GTGGAGCAAGTGTGGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
38107258 GTGG
1 GTGG
38107262 CAAAGGCTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.25
Consensus pattern (30 bp):
GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
Found at i:38107916 original size:32 final size:32
Alignment explanation
Indices: 38107861--38107955 Score: 149
Period size: 33 Copynumber: 3.0 Consensus size: 32
38107851 GCCCCCCAAA
38107861 AAAAACCTAACCCTAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCC-AAAAAAAAAAAGAAAAAAG
38107894 AAAAACCTAACCCAAAAAAAAAAAGAAGAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAA-AAAAG
*
38107927 AAAAACCTAA-CCAAAAAAAAATA-AAAAAA
1 AAAAACCTAACCCAAAAAAAAAAAGAAAAAA
38107956 CCTAGCCACC
Statistics
Matches: 60, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
30 4 0.07
31 2 0.03
32 26 0.43
33 28 0.47
ACGTcount: A:0.75, C:0.15, G:0.05, T:0.05
Consensus pattern (32 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
Found at i:38110502 original size:12 final size:12
Alignment explanation
Indices: 38110482--38110517 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
38110472 ATTCATTTAA
38110482 CATTCATGCATT
1 CATTCATGCATT
*
38110494 CATTTATGCATT
1 CATTCATGCATT
*
38110506 CATTCATTCATT
1 CATTCATGCATT
38110518 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:38117498 original size:70 final size:69
Alignment explanation
Indices: 38117379--38117800 Score: 385
Period size: 70 Copynumber: 6.2 Consensus size: 69
38117369 GAGTTAAGCC
*
38117379 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
38117443 TGAGGTA
63 TGAGGTA
* * ** * *
38117450 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
38117515 AGGTA
65 AGGTA
* *
38117520 TTTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
38117584 GAGGTA
64 GAGGTA
* * * ** * * *
38117590 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
38117646 ---A
66 GGTA
*** ** * *
38117647 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
38117708 GGTA
66 GGTA
* * *
38117712 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
38117777 TGAGGTA
63 TGAGGTA
*
38117784 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
38117801 CAATTTACGT
Statistics
Matches: 282, Mismatches: 45, Indels: 49
0.75 0.12 0.13
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
68 3 0.01
69 37 0.13
70 108 0.38
71 18 0.06
72 63 0.22
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:38117672 original size:262 final size:256
Alignment explanation
Indices: 38117212--38117803 Score: 1031
Period size: 262 Copynumber: 2.3 Consensus size: 256
38117202 TTTCAAGGAA
38117212 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TTGT
38117277 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
65 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
38117342 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
130 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
*
38117407 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
195 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTTTGTGTTTT
38117469 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
*
38117534 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTT
66 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--TT
38117599 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
126 TA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
38117664 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTTTGTGTT
190 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTTTGTGTT
38117729 TT
255 TT
* * * * *
38117731 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
38117796 GTTTTCAA
63 GTTTTCAA
38117804 TTTACGTTGT
Statistics
Matches: 319, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
256 60 0.19
257 60 0.19
259 2 0.01
261 4 0.01
262 130 0.41
264 54 0.17
265 9 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (256 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGTT
TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:38117762 original size:72 final size:71
Alignment explanation
Indices: 38117641--38117806 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
38117631 GAGTTAAGCC
** * *
38117641 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACAC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACAC
38117705 TGAGGTA
65 TGAGGTA
* *
38117712 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACAC
38117777 TGAGGTA
65 TGAGGTA
* *
38117784 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
38117807 ACGTTGTTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACT
GAGGTA
Found at i:38117905 original size:140 final size:140
Alignment explanation
Indices: 38117735--38117994 Score: 418
Period size: 140 Copynumber: 1.9 Consensus size: 140
38117725 TGTTTTAATT
*
38117735 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTC-GTTT
* * *
38117800 TCAATTTAC-G-TTGTTC-AAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
65 TCAATTT-CTGCCT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTC
38117862 TACTTTTTCAAAA
128 TACTTTTTCAAAA
38117875 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCGTTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCGTTTT
*
38117940 CAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
66 CAATTTCTGCCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTT
38117995 GGCTCACGCT
Statistics
Matches: 111, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
138 1 0.01
139 15 0.14
140 60 0.54
141 35 0.32
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (140 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCGTTTT
CAATTTCTGCCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTAC
TTTTTCAAAA
Found at i:38118017 original size:87 final size:89
Alignment explanation
Indices: 38117871--38118031 Score: 265
Period size: 87 Copynumber: 1.8 Consensus size: 89
38117861 CTACTTTTTC
*
38117871 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTC-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGCTATTTTCAATTTCT
38117935 GT-TTTCAATTTCTGCCTTTCAAA
66 GTCTTTCAATTTCTGCCTTTCAAA
* *
38117958 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCTGAGCTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACGCCGAGCTATTTTCAATTTC
38118022 TGTCTTTCAA
65 TGTCTTTCAA
38118032 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
86 2 0.03
87 58 0.85
88 2 0.03
89 6 0.09
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (89 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGCTATTTTCAATTTCT
GTCTTTCAATTTCTGCCTTTCAAA
Found at i:38118059 original size:75 final size:76
Alignment explanation
Indices: 38117936--38118526 Score: 379
Period size: 87 Copynumber: 7.2 Consensus size: 76
38117926 TTCAATTTCG
**
38117936 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
38118001 C-GCTGAGCTA
66 CTGCTGAGCTA
* * *
38118011 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
** *
38118075 ACACACTGAGGTA
65 AC-TGCTGAGCTA
* * * * * *
38118088 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
38118153 CACATG-TCGAGGTA
64 CAC-TGCT-GAGCTA
** *
38118167 TTTTCAAAATCTGTTTTTCAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTCTGTTTTTCAA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
38118232 CCTTGGCTCTCGTGCTGAGCTA
56 CCTTGGCTCAC-TGCTGAGCTA
38118254 TTTTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTT
1 TTTTCAATTTCTG-----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---
* ** ** * *
38118319 TTAATTTCTACGAGAGTTGAGTTGA
57 CT--TGGCT-C-ACTGCTGAGCT-A
* * *
38118344 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
* *
38118406 TCACAT-ATCGAGGTA
63 TCAC-TGCT-GAGCTA
* *
38118421 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGTGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
38118485 AACCTTGGCTCACGTGCTGAGCTA
54 AGCCTTGGCTCAC-TGCTGAGCTA
38118509 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
38118527 AATGTCTGTT
Statistics
Matches: 410, Mismatches: 54, Indels: 103
0.72 0.10 0.18
Matches are distributed among these distances:
74 3 0.01
75 62 0.15
76 4 0.01
77 29 0.07
78 6 0.01
79 67 0.16
80 6 0.01
81 1 0.00
82 5 0.01
83 33 0.08
84 32 0.08
85 5 0.01
86 3 0.01
87 69 0.17
88 56 0.14
89 8 0.02
90 1 0.00
91 1 0.00
92 19 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CTGCTGAGCTA
Found at i:38118139 original size:79 final size:74
Alignment explanation
Indices: 38117936--38118317 Score: 260
Period size: 79 Copynumber: 4.8 Consensus size: 74
38117926 TTCAATTTCG
* ** *
38117936 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCACA
*
38118001 CGCTGAGCTA
65 CACTGAGCTA
* * *
38118011 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT--G-GCA
*
38118076 CACACTGAGGTA
63 CACACTGAGCTA
* * * * **
38118088 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCA
* *
38118153 CACATGTCGAGGTA
63 CACA-CT-GAGCTA
* *** *
38118167 TTTTCAAAATCTGTTTTTCAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTC--AA----TTTAT--A-TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
38118232 CCTTGGCTCTCGTGCTGAGCTA
56 -CTTGGCACAC--ACTGAGCTA
* * *
38118254 TTTTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
1 TTTTCAA----T-TTATATCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
38118318 TTTAATTTCT
Statistics
Matches: 249, Mismatches: 36, Indels: 37
0.77 0.11 0.11
Matches are distributed among these distances:
74 3 0.01
75 54 0.22
76 1 0.00
77 20 0.08
78 2 0.01
79 58 0.23
80 2 0.01
82 10 0.04
83 34 0.14
85 6 0.02
86 6 0.02
87 52 0.21
88 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (74 bp):
TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTGGCACAC
ACTGAGCTA
Found at i:38118340 original size:30 final size:30
Alignment explanation
Indices: 38118299--38118357 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
38118289 ACTCATATTG
38118299 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTA
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTA
*
38118329 CGAGAGTTGAGTTGAGTCTTTTAATTTCT
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCT
38118358 GTTTTTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTA
Found at i:38119221 original size:32 final size:31
Alignment explanation
Indices: 38119182--38119278 Score: 126
Period size: 32 Copynumber: 3.1 Consensus size: 31
38119172 AAGCCCCCCC
38119182 AAAAAAAACCTAACCCTAAAAAAAAAAAAGAA
1 AAAAAAAACCTAACCC-AAAAAAAAAAAAGAA
* *
38119214 AAAAAAAACCTAACTCAAAAAAAAAGAAGAAA
1 AAAAAAAACCTAACCCAAAAAAAAAAAAG-AA
*
38119246 AAAGAAAAACCTAA-CCAAAAAAAAATAA-AA
1 AAA-AAAAACCTAACCCAAAAAAAAAAAAGAA
38119276 AAA
1 AAA
38119279 CCTAGCCACC
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
30 5 0.08
31 12 0.20
32 32 0.54
33 10 0.17
ACGTcount: A:0.76, C:0.13, G:0.04, T:0.06
Consensus pattern (31 bp):
AAAAAAAACCTAACCCAAAAAAAAAAAAGAA
Found at i:38119808 original size:2 final size:2
Alignment explanation
Indices: 38119803--38119841 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
38119793 TAAATACTAT
*
38119803 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38119842 TTTAAATACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:38127471 original size:3 final size:3
Alignment explanation
Indices: 38127458--38127543 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
38127448 GAGGGCATAT
**
38127458 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
38127505 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
38127544 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:38127482 original size:12 final size:12
Alignment explanation
Indices: 38127458--38127540 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
38127448 GAGGGCATAT
38127458 ATAATAT-AATA
1 ATAATATAAATA
38127469 ATAATATAAATA
1 ATAATATAAATA
38127481 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
38127496 GGAATA-ATAATA
1 ATAATATA-AATA
38127508 ATAATATAAATA
1 ATAATATAAATA
* *
38127520 ATAGTAAAAATA
1 ATAATATAAATA
*
38127532 ATAAAATAA
1 ATAATATAA
38127541 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:38127531 original size:27 final size:27
Alignment explanation
Indices: 38127458--38127544 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
38127448 GAGGGCATAT
* *
38127458 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
38127484 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
38127508 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
38127535 A-AATAATAAA
1 ATAAT-ATAAA
38127545 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:38127873 original size:25 final size:25
Alignment explanation
Indices: 38127841--38127889 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
38127831 AAAAACTAGC
*
38127841 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAA-AACCTT
38127866 CTTTCCAAAAAAACAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAACCT
38127890 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAAACAAAAAAACCTT
Found at i:38127900 original size:20 final size:23
Alignment explanation
Indices: 38127875--38127921 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
38127865 TCTTTCCAAA
38127875 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCTCCTCC
*
38127895 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAATCCTCCTCC
38127918 AAAA
1 AAAA
38127922 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.55, C:0.30, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAACAATCCTCCTCC
Found at i:38128030 original size:22 final size:22
Alignment explanation
Indices: 38128003--38128061 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 22
38127993 TGGGGTGGTT
38128003 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAAGGGTGGTGGAG
* *
38128025 TTGGTGGCCAACAAAGGTGGTGGAG
1 TAGGTGG-C--CAAGGGTGGTGGAG
38128050 TAGGTGGCCAAG
1 TAGGTGGCCAAG
38128062 ATTTTTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
22 9 0.30
23 1 0.03
24 1 0.03
25 19 0.63
ACGTcount: A:0.22, C:0.12, G:0.47, T:0.19
Consensus pattern (22 bp):
TAGGTGGCCAAGGGTGGTGGAG
Found at i:38128473 original size:44 final size:44
Alignment explanation
Indices: 38128389--38129460 Score: 700
Period size: 44 Copynumber: 24.4 Consensus size: 44
38128379 TGCTTCACTG
* * * * * *
38128389 TAAGCACAGGAATGTCAGATTTGCTATCTTCGA-TCTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTA
* *
38128433 TAAGCATAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
* ** * * ** * *
38128477 TAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTACTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTATTTTC-AACTTGTTCCCTA
* * * * * *
38128521 TAAGCACAGGAATGTCAGATCTGCTATCTTTGATC-CGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTGTTCCCTA
* * *
38128565 TAAGCACAGGGATACCAAATCTGTTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
* *
38128609 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
* ** * * * *
38128653 TAAGCCCAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAACTTG-TTCCCTA
* * * * * *
38128697 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTA
* * *
38128741 TAAGCATAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * * *
38128785 TAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAACTTG-TTCCCTA
* * * * * *
38128829 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
* *
38128873 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** ** * * * *
38128917 TAAGCACAGGGATGCCATGT-TGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTG-TTCCCTA
* * * * *
38128961 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTA
* *
38129005 TAAGCACAGGGATGCCAAATCTGCTACTTTCAACTTGTTTCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * ** * *
38129049 TAAGCACAGGGATGCC--ATGCTGAAATTTTCGATCTACTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTATTTTC-AACTTGTTCCCTA
* * * * *
38129093 TAAGCACAGGAATGTCAGATCTGCTATCTTTGATC-TGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTGTTCCCTA
** *
38129137 TAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
* ** * *
38129181 TAAGCACAGGGATGCC--A--TGCTAAATTTTCGATCTACTTCACTG
1 TAAGCACAGGGATGCCAAATCTGCT--ATTTTC-AACTTGTTCCCTA
* * * * * *
38129224 TAAACACAGGAATGTCAGATCTGCTATCTTTGATC-TGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTGTTCCCTA
** *
38129268 TAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * ** *
38129312 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTACTTCACTA
1 TAAGCACAGGGATGCCAAAT-CTGCTATTTTC-AACTTGTTCCCTA
* * * * * *
38129356 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTA
**
38129400 TAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
38129444 TAAGCACAGGGATGCCA
1 TAAGCACAGGGATGCCA
38129461 TGCTGAAATC
Statistics
Matches: 782, Mismatches: 198, Indels: 96
0.73 0.18 0.09
Matches are distributed among these distances:
40 4 0.01
42 15 0.02
43 77 0.10
44 610 0.78
45 54 0.07
46 18 0.02
47 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
Found at i:38128657 original size:132 final size:131
Alignment explanation
Indices: 38128546--38129519 Score: 1333
Period size: 132 Copynumber: 7.4 Consensus size: 131
38128536 CAGATCTGCT
* * * ** * * * *
38128546 ATCTTTGATCCGTTCCCTATAAGCACAGGGATACCAAATCTGTTGTTTTCAACTTGTTCCCTATA
1 ATCTTTGATCCGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
* *
38128611 AGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCCCAGGGATGCCATGCTGA
66 AGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
38128676 A
131 A
* * *
38128677 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTA
1 ATCTTTGATCCG-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCCTA
* *
38128741 TAAGCATAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
64 TAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
38128806 GAA
129 GAA
* * *
38128809 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCCG-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTAT
* *
38128874 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTG
65 AAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
38128939 AA
130 AA
* *
38128941 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTA
1 ATCTTTGATCCG-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCCTA
* * *
38129005 TAAGCACAGGGATGCCAAATCTGCTACTTTCAACTTGTTTCCTATAAGCACAGGGATGCCATGCT
64 TAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
38129070 GAA
129 GAA
**
38129073 AT-TTTCGATCTAC-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGA-TCTGTTCCC
1 ATCTTT-GATC--CGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCC
* *
38129135 TATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGGGATGCCATG
62 TATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
38129200 CT-AA
127 CTGAA
* **
38129204 AT-TTTCGATCTAC-TTCACTGTAAACACAGGAATGTCAGATCTGCTATCTTTGA-TCTGTTCCC
1 ATCTTT-GATC--CGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCC
* *
38129266 TATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGGGATGCCATG
62 TATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
38129331 CTGAA
127 CTGAA
* * * *
38129336 ATCTTCGATCTAC-TTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCT
1 ATCTTTGATC--CGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCCT
*
38129399 ATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
63 ATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
38129464 TGAA
128 TGAA
*
38129468 ATCTTCGATCTAC-TTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCA
1 ATCTTTGATC--CGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCA
38129520 GTCTGCTCCT
Statistics
Matches: 800, Mismatches: 34, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
131 146 0.18
132 651 0.81
133 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (131 bp):
ATCTTTGATCCGTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
AGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
A
Found at i:38128921 original size:264 final size:264
Alignment explanation
Indices: 38128600--38129518 Score: 1583
Period size: 264 Copynumber: 3.5 Consensus size: 264
38128590 GTTTTCAACT
* *
38128600 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCCCAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGA
*
38128665 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
* * * * *
38128730 TCCGTTCCCTATAAGCATAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGG
131 TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGG
*
38128795 GATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
196 GATGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
*
38128860 GATT
261 GATC
*
38128864 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGA
* *
38128929 TGCCATGTTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
*
38128994 TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTACTTTCAACTTGTTTCCTATAAGCACAGG
131 TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGG
38129059 GATGCCATGCTGAAAT-TTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
196 GATGCCATGCTGAAATCTTT-GATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
*
38129123 TGATC
260 CGATC
* *
38129128 TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGA
* *
38129193 TGCCATGCT-AAAT-TTTCGATCTACTTCACTGTAAACACAGGAATGTCAGATCTGCTATCTTTG
66 TGCCATGCTGAAATCTTT-GATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
38129256 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAG
130 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAG
* *
38129321 GGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTT
195 GGATGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
38129386 CGATC
260 CGATC
* *
38129391 CGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGA
*
38129456 TGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
66 TGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
38129519 AGTCTGCTCC
Statistics
Matches: 623, Mismatches: 27, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
262 3 0.00
263 250 0.40
264 368 0.59
265 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (264 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGCTTTCAACTTGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGCTTTCAACTTGTTTCCTATAAGCACAGG
GATGCCATGCTGAAATCTTTGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
GATC
Found at i:38129693 original size:66 final size:68
Alignment explanation
Indices: 38129567--38129758 Score: 259
Period size: 66 Copynumber: 2.9 Consensus size: 68
38129557 TTTGATCTTC
* * *
38129567 TTTCACTGAAACTTCAAGGA-ATCTACTGTGGCTTTTAGCCTCTCCAATGCCATTT-TGGAAGAA
1 TTTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAA
*
38129630 GAGG
66 -AAG
* *
38129634 TTTC-CTGAAACTTCAAGGAGATCTGTTGT-GCTTTTAG-CGCTCCAACGCCATTTCAGGAAGAA
1 TTTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAA
38129696 AAG
66 AAG
* * *
38129699 ATCCTCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
1 TTTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
38129759 GAAAAAGAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
65 18 0.16
66 54 0.49
67 19 0.17
68 19 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (68 bp):
TTTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAA
AAG
Found at i:38129928 original size:86 final size:87
Alignment explanation
Indices: 38129838--38130720 Score: 529
Period size: 86 Copynumber: 10.2 Consensus size: 87
38129828 CTATTTCCCA
* * * *
38129838 ACTGCTTAAGGGTTAAGATC-TGTAAATTCAACCTGTTACCCTACTGGTTAGGGGTTAAGATTTG
1 ACTGCTTAGGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGTTAAGATCTG
38129902 TAAATCTTCAGCCTGTTACCCT
66 TAAATCTTCAGCCTGTTACCCT
* * * *
38129924 ACTGCTTAGGGGTTTAAGGT-TTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAA-AGCC
1 ACTGCTTAGGGG-TTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGTTAAGA-TC
** * * * * * *
38129987 CATCATTTTTTA-TCTGTTTCCCT
64 TGTAAATCTTCAGCCTGTTACCCT
*
38130010 ACTGCTTAGGGGGTTAAGATC-TGTAAATCTTC-AGCCAGTTACCCTACTGCTTAGGGGTTTAAG
1 ACTGCTTA-GGGGTTAAGATCTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGG-TTAAG
* * *
38130073 -GCTTGTAAA--TTCGGCTTGTTACCCT
61 ATC-TGTAAATCTTCAGCCTGTTACCCT
** * * ** * * *
38130098 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTTGATCTGTT-TCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTA-GGGGTT-AAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTA-GGGGTTAAGAT
38130161 CTGTAAATCTTCAGCCTGTTACCCT
63 CTGTAAATCTTCAGCCTGTTACCCT
* * * * * *
38130186 ACTACTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGAGGGTTAA-AGC-
1 ACTGCTTAGGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAG-GGGTTAAGATCT
** * * *
38130248 CCATCATCTTC-GATCTGTTTCCCT
65 GTA-AATCTTCAG-CCTGTTACCCT
* ** * * *
38130272 ACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATC
1 ACTGCTTA-GGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGG-GTTAAGATC
* * *
38130336 TG-CAA--TTCGGTCTGTTACCCT
64 TGTAAATCTTCAGCCTGTTACCCT
* * * * * * *
38130357 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGA
1 ACTGCTTAGGGG-TTAAGA-TCTT-GTAAATTCGACCTGTTACCCTACTGCTTA-GGGGTTAAGA
38130420 TCTGTAAATCTTCAGCCTGTTA-CCT
62 TCTGTAAATCTTCAGCCTGTTACCCT
* * * * *
38130445 ACTGCTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-
1 ACTGCTTAGGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTA-GGGGTTAAGATCT
** * * *
38130507 CCATCATCTTC-GATCTGTTTCCCT
65 GTA-AATCTTCAG-CCTGTTACCCT
* ** * * *
38130531 ACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATC
1 ACTGCTTA-GGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGG-GTTAAGATC
* * *
38130595 TG-CAA--TTCGGTCTGTTACCCT
64 TGTAAATCTTCAGCCTGTTACCCT
* * * * *
38130616 A-TCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCTACTGCTTAGGGGTT-AGA
1 ACT-GCTTAGGGG-TTAAGA-TCTT-GTAAATTCGACCTGTTACCCTACTGCTTAGGGGTTAAGA
38130677 TCTGTAAATCTTCAGCCTGTTACCCT
62 TCTGTAAATCTTCAGCCTGTTACCCT
*
38130703 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGG-TTAAG
38130721 GCTTGTGAAT
Statistics
Matches: 616, Mismatches: 123, Indels: 115
0.72 0.14 0.13
Matches are distributed among these distances:
84 20 0.03
85 73 0.12
86 213 0.35
87 194 0.31
88 94 0.15
89 21 0.03
90 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (87 bp):
ACTGCTTAGGGGTTAAGATCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGTTAAGATCTG
TAAATCTTCAGCCTGTTACCCT
Found at i:38129971 original size:43 final size:42
Alignment explanation
Indices: 38129838--38130720 Score: 356
Period size: 43 Copynumber: 20.4 Consensus size: 42
38129828 CTATTTCCCA
* * *
38129838 ACTGCTTAAGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCT
* * *
38129880 ACTGGTTAGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAA--TTCAGCTTGTTACCCT
* * *
38129924 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGG-TTAAGATCTGTAAATTCAGCTTGTTACCCT
* * * *
38129967 ACTGCTTAGGGGTTAAAGCCCATCAT-T--TTTTATC-TGTTTCCCT
1 ACTGCTTAGGGGTT-AAG---ATC-TGTAAATTCAGCTTGTTACCCT
**
38130010 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCAGCTTGTTACCCT
* *
38130055 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGG-TTAAGATC-TGTAAATTCAGCTTGTTACCCT
* * * *
38130098 ACTGCTTAGGGGGTTAAAGCCCATCATCT---TTGATC-TGTT-TCCT
1 ACTGCTTA-GGGGTT-AAG---ATC-TGTAAATTCAGCTTGTTACCCT
*
38130141 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCAGCTTGTTACCCT
* * **
38130186 ACTACTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGTTAAGATC-TGTAAATTCAGCTTGTTACCCT
** * ** * *
38130228 ACTGCTTAGAGGGTTAAAGCCCAT-CATCTTC-GATCTGTTTCCCT
1 ACTGCTTAG-GGGTT-AAGATC-TGTAAATTCAGCT-TGTTACCCT
** * *
38130272 ACTGCTTAGGGGGTTAAGATCT-TCATCTTC-GATCTGTTTCCCT
1 ACTGCTTA-GGGGTTAAGATCTGT-AAATTCAGCT-TGTTACCCT
* * *
38130315 ACTGCTTAGGGAGATAAGATCTG-CAATTC-GGTCTGTTACCCT
1 ACTGCTTAGGG-GTTAAGATCTGTAAATTCAGCT-TGTTACCCT
* * * * * *
38130357 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTC-GATCTGTTTCCCT
1 ACTGCTTAGGGG-TTAAGA-TC-T-GTAAATTCAGCT-TGTTACCCT
* *
38130401 ACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA-CCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCAGCTTGTTACCCT
* **
38130445 ACTGCTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGTTAAGATC-TGTAAATTCAGCTTGTTACCCT
** * ** * *
38130487 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTC-GATCTGTTTCCCT
1 ACTGCTTA-GGGGTT-AAGATC-TGTAAATTCAGCT-TGTTACCCT
** * *
38130531 ACTGCTTAGGGGGTTAAGATCT-TCATCTTC-GATCTGTTTCCCT
1 ACTGCTTA-GGGGTTAAGATCTGT-AAATTCAGCT-TGTTACCCT
* * *
38130574 ACTGCTTAGGGAGATAAGATCTG-CAATTC-GGTCTGTTACCCT
1 ACTGCTTAGGG-GTTAAGATCTGTAAATTCAGCT-TGTTACCCT
* * * * *
38130616 A-TCGATTAGGGGTTTAAGACCCTTCGT--CTTC-GATCTGTTTCCCT
1 ACT-GCTTAGGGG-TTAAGA-TC-T-GTAAATTCAGCT-TGTTACCCT
*
38130660 ACTGCTTAGGGGTT-AGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAA--TTCAGCTTGTTACCCT
*
38130703 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGG-TTAAG
38130721 GCTTGTGAAT
Statistics
Matches: 660, Mismatches: 108, Indels: 143
0.72 0.12 0.16
Matches are distributed among these distances:
38 2 0.00
39 6 0.01
40 5 0.01
41 15 0.02
42 128 0.19
43 231 0.35
44 193 0.29
45 73 0.11
46 3 0.00
47 1 0.00
48 3 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (42 bp):
ACTGCTTAGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCT
Found at i:38130466 original size:259 final size:259
Alignment explanation
Indices: 38129870--38130731 Score: 1303
Period size: 259 Copynumber: 3.3 Consensus size: 259
38129860 TAAATTCAAC
* * *
38129870 CTGTTACCCTACTGGTTAGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
* * * * **
38129935 GTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATTTTTTAT
66 GCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTCGAT
* * * *
38130000 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCAGTTACCCTACTGCTTAG
131 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* * * * * * * *
38130064 GG-GTTTAAG-GCTTGTAAATTCGG-CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCAT
193 GGAG-ATAAGATC-TG-CAATTCGGTC-TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCGT
*
38130125 CTTTGAT
253 CTTCGAT
*
38130132 CTGTTT-CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAGG
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
38130196 GG-TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGAGGGTTAAAGCCCATCATCTTCG
65 GGCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAG-GGGTTAAAGCCCATCATCTTCG
38130260 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
129 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
38130325 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
194 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
38130390 T
259 T
*
38130391 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA-CCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
38130455 GG-TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65 GGCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCG
38130519 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
129 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
*
38130584 GAGATAAGATCTGCAATTCGGTCTGTTACCCTATCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
194 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
38130649 T
259 T
*
38130650 CTGTTTCCCTACTGCTTAGGGGTT-AGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
*
38130714 GCTTAAGGCTTGTGAATT
66 GCTTAAGGCTTGTAAATT
38130732 CACTGATTCT
Statistics
Matches: 561, Mismatches: 28, Indels: 25
0.91 0.05 0.04
Matches are distributed among these distances:
257 25 0.04
258 20 0.04
259 284 0.51
260 77 0.14
261 51 0.09
262 104 0.19
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (259 bp):
CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
GCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTCGAT
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGA
GATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
Found at i:38130890 original size:66 final size:66
Alignment explanation
Indices: 38130784--38130910 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
38130774 TCTATGCTTA
**
38130784 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
38130849 G
66 G
*
38130850 TGTCAAACAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
38130911 TATATGAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:38132099 original size:6 final size:6
Alignment explanation
Indices: 38132088--38132123 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
38132078 GTTTTTGTGT
38132088 CCTTTG CCTTTG -CTTTG CCTTT- CCTTTG CCTTTG CC
1 CCTTTG CCTTTG CCTTTG CCTTTG CCTTTG CCTTTG CC
38132124 ATATAACTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.00, C:0.36, G:0.14, T:0.50
Consensus pattern (6 bp):
CCTTTG
Found at i:38132105 original size:11 final size:11
Alignment explanation
Indices: 38132089--38132122 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
38132079 TTTTTGTGTC
38132089 CTTTGCCTTTG
1 CTTTGCCTTTG
*
38132100 CTTTGCCTTTC
1 CTTTGCCTTTG
38132111 CTTTGCCTTTG
1 CTTTGCCTTTG
38132122 C
1 C
38132123 CATATAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.32, G:0.15, T:0.53
Consensus pattern (11 bp):
CTTTGCCTTTG
Found at i:38135990 original size:2 final size:2
Alignment explanation
Indices: 38135985--38136016 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
38135975 AAAACAATAC
38135985 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38136017 CATAAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:38136261 original size:3 final size:3
Alignment explanation
Indices: 38136253--38136332 Score: 67
Period size: 3 Copynumber: 26.3 Consensus size: 3
38136243 GCATATATAT
* *
38136253 ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATG AGA ATA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA
* *
38136300 AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
38136333 AACAAAGCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
2 6 0.10
3 47 0.76
4 9 0.15
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:38136272 original size:12 final size:12
Alignment explanation
Indices: 38136249--38136329 Score: 74
Period size: 12 Copynumber: 6.5 Consensus size: 12
38136239 GAGGGCATAT
38136249 ATATATAATAATA
1 ATATA-AATAATA
38136262 ATATAAATAATA
1 ATATAAATAATA
* *
38136274 ATATATACATGAGA
1 ATATA-A-ATAATA
38136288 ATA-ATAATAATA
1 ATATA-AATAATA
38136300 ATATAAATAATA
1 ATATAAATAATA
* *
38136312 GTAAAAATAATA
1 ATATAAATAATA
*
38136324 AAATAA
1 ATATAA
38136330 TAAAACAAAG
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
12 39 0.70
13 10 0.18
14 7 0.12
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:38136329 original size:38 final size:38
Alignment explanation
Indices: 38136253--38136332 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
38136243 GCATATATAT
* * *
38136253 ATAATAATAATATAAATAATAATATATACATGAGAATA
1 ATAATAATAATATAAATAATAAAAAATACATGAAAATA
38136291 ATAATAATAATATAAATAATAGTAAAAATA-AT-AAAATA
1 ATAATAATAATATAAATAATA--AAAAATACATGAAAATA
38136329 ATAA
1 ATAA
38136333 AACAAAGCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 30 0.81
39 2 0.05
40 5 0.14
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (38 bp):
ATAATAATAATATAAATAATAAAAAATACATGAAAATA
Found at i:38136688 original size:22 final size:22
Alignment explanation
Indices: 38136660--38136739 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
38136650 TAACCGTCTT
38136660 TCCAAAAAAACAAAAAACCTCC
1 TCCAAAAAAACAAAAAACCTCC
* * * *
38136682 TCCAAAACAAAGAACAATCCTTC
1 TCCAAAA-AAACAAAAAACCTCC
* * *
38136705 TCCAAAAAACCAAAAACCCACC
1 TCCAAAAAAACAAAAAACCTCC
*
38136727 TCC-TAAAAACAAA
1 TCCAAAAAAACAAA
38136740 GTCTTGAATG
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
21 8 0.18
22 19 0.42
23 18 0.40
ACGTcount: A:0.55, C:0.33, G:0.01, T:0.11
Consensus pattern (22 bp):
TCCAAAAAAACAAAAAACCTCC
Found at i:38136820 original size:22 final size:22
Alignment explanation
Indices: 38136793--38136852 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 22
38136783 TGGGGTGGTT
38136793 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAAGGGTGGTGGAG
* *
38136815 TTGGTGGCCAACAAAGGTGGTGGAG
1 TAGGTGG-C--CAAGGGTGGTGGAG
38136840 TAGGTGGCCAAGG
1 TAGGTGGCCAAGG
38136853 TTTTTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
22 10 0.32
23 1 0.03
24 1 0.03
25 19 0.61
ACGTcount: A:0.22, C:0.12, G:0.48, T:0.18
Consensus pattern (22 bp):
TAGGTGGCCAAGGGTGGTGGAG
Found at i:38139198 original size:19 final size:18
Alignment explanation
Indices: 38139174--38139216 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
38139164 AAAAAAAATT
*
38139174 ATAATTTTATACTTTTTTA
1 ATAATTTT-TAATTTTTTA
38139193 ATAATTTTTAATTTTTTA
1 ATAATTTTTAATTTTTTA
38139211 A-AATTT
1 ATAATTT
38139217 AAAAAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
ATAATTTTTAATTTTTTA
Found at i:38140784 original size:16 final size:16
Alignment explanation
Indices: 38140759--38140821 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
38140749 TTATGATGTG
*
38140759 AAATTTAATTATTATT
1 AAATTAAATTATTATT
*
38140775 AAATTAAATTATAAATATA
1 AAATTAAATTAT---TATT
*
38140794 AAATTTAATTATTATT
1 AAATTAAATTATTATT
38140810 AAATTAAATTAT
1 AAATTAAATTAT
38140822 AAATATATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 25 0.64
19 14 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTAAATTATTATT
Found at i:38140795 original size:13 final size:12
Alignment explanation
Indices: 38140769--38140825 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
38140759 AAATTTAATT
38140769 ATTATTAAATTAA
1 ATTA-TAAATTAA
38140782 ATTATAAATATAAA
1 ATTATAAAT-T-AA
38140796 ATT-T-AATT--
1 ATTATAAATTAA
38140804 ATTATTAAATTAA
1 ATTA-TAAATTAA
38140817 ATTATAAAT
1 ATTATAAAT
38140826 ATATTATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
8 3 0.08
10 1 0.03
11 5 0.14
12 13 0.35
13 10 0.27
14 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
ATTATAAATTAA
Found at i:38140798 original size:35 final size:35
Alignment explanation
Indices: 38140759--38140828 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
38140749 TTATGATGTG
38140759 AAATTTAATTATTATTAAATTAAATTATAAATATA
1 AAATTTAATTATTATTAAATTAAATTATAAATATA
38140794 AAATTTAATTATTATTAAATTAAATTATAAATATA
1 AAATTTAATTATTATTAAATTAAATTATAAATATA
38140829 TTATATTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (35 bp):
AAATTTAATTATTATTAAATTAAATTATAAATATA
Found at i:38145588 original size:2 final size:2
Alignment explanation
Indices: 38145581--38145606 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
38145571 GGTACTTTTA
38145581 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
38145607 TTGAAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38153212 original size:2 final size:2
Alignment explanation
Indices: 38153166--38153194 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
38153156 AAAAAGCATA
38153166 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
38153195 ATAAAGTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:38156589 original size:13 final size:14
Alignment explanation
Indices: 38156561--38156594 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
38156551 TAATATATCG
*
38156561 ATTATTTTTATGTT
1 ATTATATTTATGTT
38156575 ATTATATTT-TGTT
1 ATTATATTTATGTT
38156588 ATTATAT
1 ATTATAT
38156595 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:38156819 original size:52 final size:50
Alignment explanation
Indices: 38156743--38156983 Score: 220
Period size: 50 Copynumber: 4.8 Consensus size: 50
38156733 GTGAGAACAT
* ** * **
38156743 TGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAA-ATAG--TTAGGTCACA
* *
38156795 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAGTTAGGTCACA
* * * * *
38156845 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAA-ACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-C-AAATAGTTAGGTCACA
* * * *
38156896 TGTGTAGTACTAAGTGTAGGCTACTATGTGTA-CAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAGTTAGGTCACA
* * * *
38156944 TGTATAGTACTAAGTGCAAGCTATTATGAGTACCAAATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAG
38156984 CTTCGGTTAC
Statistics
Matches: 154, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 33 0.21
49 8 0.05
50 38 0.25
51 38 0.25
52 35 0.23
53 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAGTTAGGTCACA
Found at i:38156927 original size:101 final size:99
Alignment explanation
Indices: 38156794--38156976 Score: 276
Period size: 99 Copynumber: 1.8 Consensus size: 99
38156784 TTTAGGTCAT
*
38156794 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAAATAGTT-GGTCGCATGTATAGTACTAAG
* *
38156859 TGCAGGCTACTATGCGTACTCGAAAACTTTGATCAC
64 TGCAAGCTACTATGAGTACTCGAAAACTTTGATCAC
* * * *
38156895 GTGTGTAGTACTAAGTGTAGGCTACTATGTGTACAGATTGTTGGTCGCATGTATAGTACTAAGTG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAATAGTTGGTCGCATGTATAGTACTAAGTG
*
38156960 CAAGCTATTATGAGTAC
66 CAAGCTACTATGAGTAC
38156977 CAAATAGCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 36 0.49
100 7 0.09
101 31 0.42
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (99 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAATAGTTGGTCGCATGTATAGTACTAAGTG
CAAGCTACTATGAGTACTCGAAAACTTTGATCAC
Found at i:38157202 original size:16 final size:15
Alignment explanation
Indices: 38157181--38157210 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
38157171 GAATAGAGTA
38157181 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
38157197 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
38157211 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:38161757 original size:51 final size:51
Alignment explanation
Indices: 38161681--38161783 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
38161671 GTGTCAACTA
38161681 AAGTGTGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
1 AAGTGTGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
38161732 AAGTGTGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
1 AAGTGTGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
38161783 A
1 A
38161784 TTTTTTTCTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (51 bp):
AAGTGTGTGCGTGTGGGGGGTAACATAGAAAACTTGTTTAATTGTTTCTAC
Found at i:38163954 original size:40 final size:41
Alignment explanation
Indices: 38163870--38164011 Score: 141
Period size: 40 Copynumber: 3.5 Consensus size: 41
38163860 ACATTCAAAT
* * * * *
38163870 GCCTTCGGGACATAGCCCGG-TTACAATAAC-TCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTTAGCACGAAA
* * * *
38163910 GCCTTCGGGACTCAACCCGGATTTAGTAGCTT-GCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTTAGCACGAAA
*
38163950 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTTAGCACGAAA
38163990 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
38164012 ATCATTCGAA
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
39 3 0.04
40 71 0.86
41 9 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTTAGCACGAAA
Found at i:38177674 original size:40 final size:39
Alignment explanation
Indices: 38177637--38177807 Score: 168
Period size: 39 Copynumber: 4.4 Consensus size: 39
38177627 GCTACTCGTT
*
38177637 CAAATGCCTTCGGGACACAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACACAACCCGGATT-TAGTAACTCGCA
**
38177677 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACACAACCCGGATTTAGTAACTCGCA
** **
38177716 CAAATGCCTT-GGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CACAACCCGGATTTAGTAACTCGCA
* ** **
38177754 CGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CACAACCCGGATTTAGTAACTCGCA
*
38177794 CGAATGCCTTCGGA
1 CAAATGCCTTCGGA
38177808 TCTTAGTCCG
Statistics
Matches: 121, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
38 28 0.23
39 50 0.41
40 43 0.36
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACACAACCCGGATTTAGTAACTCGCA
Found at i:38177711 original size:39 final size:40
Alignment explanation
Indices: 38177637--38177859 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
38177627 GCTACTCGTT
**
38177637 CAAATGCCTTCGGGA-CACAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
38177677 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
38177716 CAAATGCCTT-GGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
38177754 CGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
38177794 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
38177835 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
38177860 CATCATTCGA
Statistics
Matches: 166, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
38 28 0.17
39 50 0.30
40 78 0.47
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:38177800 original size:78 final size:78
Alignment explanation
Indices: 38177665--38177859 Score: 268
Period size: 78 Copynumber: 2.5 Consensus size: 78
38177655 AGCCCGGTTA
38177665 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTT-GGA
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
38177729 TCTTAGTCCGATT
66 TCTTAGTCCGATT
* ** *
38177742 TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACGAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
*
38177807 ATCTTAGTCCGGATA
65 ATCTTAGTCC-GATT
* * *
38177822 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCCGGA
38177860 CATCATTCGA
Statistics
Matches: 104, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
77 25 0.24
78 32 0.31
79 12 0.12
80 25 0.24
81 10 0.10
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (78 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
TCTTAGTCCGATT
Found at i:38177808 original size:40 final size:40
Alignment explanation
Indices: 38177665--38177859 Score: 265
Period size: 40 Copynumber: 5.0 Consensus size: 40
38177655 AGCCCGGTTA
**
38177665 TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
38177704 TAGTAACTCGCACAAATGCCTT-GGATCTTAGTCC-GATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
38177742 TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
38177782 TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
38177822 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
38177860 CATCATTCGA
Statistics
Matches: 143, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
38 28 0.20
39 40 0.28
40 65 0.45
41 10 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:38185953 original size:75 final size:78
Alignment explanation
Indices: 38185815--38186033 Score: 277
Period size: 75 Copynumber: 2.8 Consensus size: 78
38185805 TACTCGTTCA
* * * *
38185815 AATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGA
38185879 TTTAGTAACTCGCA-
64 TTTAGTAACTCGCAC
* *
38185893 AATGCCTT-GGATCTTAGTCC-GATTTAGTAACTCGCACAATGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCACAATGCCTTCGGGA-CTTAGCCCGGAT
38185955 TTAGTAACTCGCAC
65 TTAGTAACTCGCAC
* * *
38185969 GAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 -AATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
38186034 CATCATTCGA
Statistics
Matches: 122, Mismatches: 11, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
74 3 0.02
75 32 0.26
76 18 0.15
77 14 0.11
78 20 0.16
79 9 0.07
80 23 0.19
81 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (78 bp):
AATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGATT
TAGTAACTCGCAC
Found at i:38186033 original size:40 final size:39
Alignment explanation
Indices: 38185813--38186033 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 39
38185803 GCTACTCGTT
*
38185813 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAA-GCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
38185853 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAA-GCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* *
38185893 -AATGCCTT-GGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAAGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
38185929 CAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAAGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
38185968 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
38186009 CAAAGCCTTCGGGA-CTTAGCCCGGA
1 CAAAGCCTTC-GGATCTTAGCCCGGA
38186034 CATCATTCGA
Statistics
Matches: 163, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
36 19 0.12
37 14 0.09
38 17 0.10
39 19 0.12
40 84 0.52
41 10 0.06
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAAGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:38192722 original size:29 final size:29
Alignment explanation
Indices: 38192689--38192748 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
38192679 AGGTATATAC
*
38192689 GTAAAACTCATAAGTAATGAGCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
38192718 GTAAAACTCATAAGTAATAAGCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
38192747 GT
1 GT
38192749 GATGAACTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (29 bp):
GTAAAACTCATAAGTAATAAGCTCGATAT
Found at i:38195090 original size:17 final size:17
Alignment explanation
Indices: 38195070--38195103 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38195060 AGGTTTAGGT
38195070 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
38195087 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
38195104 AAACTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:38196260 original size:38 final size:38
Alignment explanation
Indices: 38196209--38196502 Score: 185
Period size: 38 Copynumber: 7.0 Consensus size: 38
38196199 TTTCAAATTA
* *
38196209 ACATGTATAACCGTGGCATATCCACTTAGCACCAAGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
* *
38196247 ACATGTTTAACCGTGGTATATCCACTTAGCATCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
38196288 GAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
38196332 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
38196373 GAATCAATATATGTAACCGTGGCATATTCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
*
38196417 ACATGTATCAATATGTGTAATCC-TGGAATATCCACTTAGCACCACGTT
1 ACATG--------T-T-TAA-CCGTGGCATATCCACTTAGCACCACGTT
* * * *
38196465 ACACGTATAACCGTGGTATATCCACTTAGCACTACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
38196503 TTTTCATTCC
Statistics
Matches: 204, Mismatches: 24, Indels: 56
0.72 0.08 0.20
Matches are distributed among these distances:
37 2 0.01
38 84 0.41
39 3 0.01
40 6 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 4 0.02
47 52 0.25
48 33 0.16
49 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:38196308 original size:47 final size:47
Alignment explanation
Indices: 38196254--38196465 Score: 246
Period size: 47 Copynumber: 4.7 Consensus size: 47
38196244 GTTACATGTT
* *
38196254 TAACCGTGGTATATCCACTTAGCATCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
38196301 TAACCGTGGCATATCCAGTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
38196339 TAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
38196386 TAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
38196434 TAATCC-TGGAATATCCACTTAGCACCACGTTA
1 TAA-CCGTGGCATATCCACTTAGCACCACGTTA
38196466 CACGTATAAC
Statistics
Matches: 139, Mismatches: 15, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
38 26 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 55 0.40
48 40 0.29
49 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:38196311 original size:85 final size:85
Alignment explanation
Indices: 38196216--38196422 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
38196206 TTAACATGTA
* *
38196216 TAACCGTGGCATATCCACTTAGCACCAAGTTACATGTTTAACCGTGGTATATCCACTTAGCATCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
38196281 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
38196301 TAACCGTGGCATATCCAGTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
38196366 TGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
38196386 TAACCGTGGCATATTCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
38196423 ATCAATATGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:38196453 original size:48 final size:48
Alignment explanation
Indices: 38196339--38196472 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 48
38196329 GTTACATGTT
* * *
38196339 TAACCGTGGTATATCCACTTAGCACCATGTTA-ATGAATCAATATATG
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
38196386 TAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
*
38196434 TAATCC-TGGAATATCCACTTAGCACCACGTTACACGTAT
1 TAA-CCGTGGAATATCCACTTAGCACCACGTTACATGTAT
38196473 AACCGTGGTA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
47 29 0.38
48 46 0.60
49 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:38196461 original size:133 final size:132
Alignment explanation
Indices: 38196254--38196496 Score: 380
Period size: 133 Copynumber: 1.8 Consensus size: 132
38196244 GTTACATGTT
* * * *
38196254 TAACCGTGGTATATCCACTTAGCATCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGAATATCCAC
* *
38196319 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
38196384 TG
131 TG
* * *
38196386 TAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAATATGTGTAATCC-TGGAATATCC
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA-CCGTGGAATATCC
38196450 ACTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCAC
64 ACTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCAC
38196497 TACGTTTTTT
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
132 29 0.29
133 69 0.69
134 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGAATATCCAC
TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAATATA
TG
Found at i:38196901 original size:13 final size:13
Alignment explanation
Indices: 38196883--38196911 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
38196873 GGTTGTTTAT
38196883 TAAACTAATTAAC
1 TAAACTAATTAAC
38196896 TAAACTAATTAAC
1 TAAACTAATTAAC
38196909 TAA
1 TAA
38196912 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:38197705 original size:28 final size:28
Alignment explanation
Indices: 38197665--38197720 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
38197655 TCATAATTAG
38197665 GGTGTTTATATAGGCTTTGGATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
38197693 GGTGTTTATATAGGCTTTGGATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
38197721 TCTTCTTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.07, G:0.32, T:0.46
Consensus pattern (28 bp):
GGTGTTTATATAGGCTTTGGATTGGCTT
Found at i:38206814 original size:39 final size:40
Alignment explanation
Indices: 38206718--38206898 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
38206708 ATGATGTCCA
* * * * * *
38206718 GGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCTG
* * *
38206758 GACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAATTCTG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCTG
* *
38206798 GGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTG
* *
38206837 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCTG
* *
38206877 GGCTATGTCCCAAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
38206899 AACGAGTAAC
Statistics
Matches: 115, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 33 0.29
40 73 0.63
41 9 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTG
Found at i:38206920 original size:79 final size:79
Alignment explanation
Indices: 38206767--38206931 Score: 172
Period size: 79 Copynumber: 2.1 Consensus size: 79
38206757 GGACTAAGAT
* * * * ** *
38206767 CCGAAGGCATTTGTGTGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACAAGTAACTAA
* *
38206832 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
38206846 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAGTAACT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACAAGTAACT
* *
38206910 ATAT-TCGGTTAAATT
64 AAATCTCGGTTAAATC
38206925 CCGAAGG
1 CCGAAGG
38206932 TACGTGATTC
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
78 2 0.03
79 46 0.66
80 22 0.31
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACAAGTAACTAA
ATCTCGGTTAAATC
Found at i:38211018 original size:52 final size:51
Alignment explanation
Indices: 38210961--38211092 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 51
38210951 ATGAACAAAT
* *
38210961 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
* * *
38211013 GAGTTACATAGTGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* * *
38211063 AAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
38211093 CAAAACACAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 32 0.47
51 14 0.21
52 22 0.32
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:38213065 original size:18 final size:19
Alignment explanation
Indices: 38213038--38213101 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
38213028 TAAGTAATTA
38213038 AGTTGTTTTAATTTTATTT
1 AGTTGTTTTAATTTTATTT
* * *
38213057 AGTTG-TTTAA-ATAAATT
1 AGTTGTTTTAATTTTATTT
* *
38213074 CGATTGTTTTAATTTTGTTT
1 AG-TTGTTTTAATTTTATTT
38213094 AGTTGTTT
1 AGTTGTTT
38213102 AAATAAATTC
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 16 0.48
20 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.14, T:0.61
Consensus pattern (19 bp):
AGTTGTTTTAATTTTATTT
Found at i:38213083 original size:37 final size:37
Alignment explanation
Indices: 38213040--38213112 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
38213030 AGTAATTAAG
38213040 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
*
38213077 TTGTTTTAATTTTGTTTAGTTGTTTAAATAAATTCG
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCG
38213113 GCAATTAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (37 bp):
TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
Found at i:38216381 original size:40 final size:39
Alignment explanation
Indices: 38216269--38216421 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
38216259 GGATATAGCG
* * * * ***
38216269 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATGGGA
* * * *
38216309 GCTCGCACAAATGCCTTTGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCC-TTCGGACTTAGCCCGGATATGGGA
* **
38216349 ACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGA-CTTAGCCCGGATATGGGA
*
38216389 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTC-GGACTTAGCCCGGA
38216422 CATCATTCGA
Statistics
Matches: 89, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
39 5 0.06
40 71 0.80
41 13 0.15
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGACTTAGCCCGGATATGGGA
Found at i:38219622 original size:12 final size:12
Alignment explanation
Indices: 38219605--38219658 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
38219595 AAGAGTTTGT
38219605 AGAAAAAGTA-AA
1 AGAAAAAG-ACAA
38219617 AGAAAAAGAACAA
1 AGAAAAAG-ACAA
* *
38219630 GGAAAAA-AGAA
1 AGAAAAAGACAA
38219641 AGAAAAAGACAA
1 AGAAAAAGACAA
38219653 AGAAAA
1 AGAAAA
38219659 GAAAATCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 9 0.26
12 18 0.51
13 8 0.23
ACGTcount: A:0.76, C:0.04, G:0.19, T:0.02
Consensus pattern (12 bp):
AGAAAAAGACAA
Found at i:38219648 original size:36 final size:36
Alignment explanation
Indices: 38219605--38219682 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
38219595 AAGAGTTTGT
*
38219605 AGAAAAAGTA-AAAGAAAA-AGAA-CAAGGAAAAAAGAA
1 AGAAAAAG-ACAAAGAAAAGAAAATCAA-GAAAAAA-AA
38219641 AGAAAAAGACAAAGAAAAGAAAATCAAGAAAAAAAA
1 AGAAAAAGACAAAGAAAAGAAAATCAAGAAAAAAAA
38219677 AGAAAA
1 AGAAAA
38219683 GGTGAGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
35 1 0.03
36 24 0.63
37 10 0.26
38 3 0.08
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.03
Consensus pattern (36 bp):
AGAAAAAGACAAAGAAAAGAAAATCAAGAAAAAAAA
Found at i:38219655 original size:30 final size:28
Alignment explanation
Indices: 38219609--38219683 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 28
38219599 GTTTGTAGAA
*
38219609 AAAGTAAAAGAAAAAGAACAAGGAAAA-AAG
1 AAAGAAAAAG-AAAAGAA-AA-GAAAACAAG
38219639 AAAGAAAAAGACAAAGAAAAGAAAATCAAG
1 AAAGAAAAAGA-AAAGAAAAGAAAA-CAAG
*
38219669 AAAAAAAAAGAAAAG
1 AAAGAAAAAGAAAAG
38219684 GTGAGAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 5 0.12
29 7 0.17
30 28 0.70
ACGTcount: A:0.76, C:0.04, G:0.17, T:0.03
Consensus pattern (28 bp):
AAAGAAAAAGAAAAGAAAAGAAAACAAG
Found at i:38219682 original size:10 final size:10
Alignment explanation
Indices: 38219632--38219682 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
38219622 AAGAACAAGG
38219632 AAAAAAGAAA
1 AAAAAAGAAA
*
38219642 GAAAAAGACAA
1 AAAAAAGA-AA
*
38219653 AGAAAAG-AA
1 AAAAAAGAAA
**
38219662 AATCAAGAAA
1 AAAAAAGAAA
38219672 AAAAAAGAAA
1 AAAAAAGAAA
38219682 A
1 A
38219683 GGTGAGAAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
9 6 0.19
10 18 0.58
11 7 0.23
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:38222011 original size:43 final size:43
Alignment explanation
Indices: 38221963--38222098 Score: 159
Period size: 43 Copynumber: 3.2 Consensus size: 43
38221953 ATTCCATGTG
*
38221963 AGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTA
1 AGACCATGTCTGGGACATTGGCATCGTATTGTGATTACGTGTA
* *
38222006 AGACCATGTCTGGGACATTGGCATCGTTATTCT-ATTTCGTGTA
1 AGACCATGTCTGGGACATTGGCATCG-TATTGTGATTACGTGTA
* * * * * *
38222049 AGACCCTATCTAGGACAGTGGCATCG-ATATGTGATAACATGTA
1 AGACCATGTCTGGGACATTGGCATCGTAT-TGTGATTACGTGTA
38222092 AGACCAT
1 AGACCAT
38222099 ATCTAGGATA
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 69 0.88
44 5 0.06
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
AGACCATGTCTGGGACATTGGCATCGTATTGTGATTACGTGTA
Found at i:38222102 original size:43 final size:42
Alignment explanation
Indices: 38221952--38222106 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 42
38221942 ATTGAGATGC
* * * * *
38221952 GATTCCATGTGAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACATGTAAGACCATATCTAGGACATTGGCATCGTA-TGT
* * *
38221995 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT-T
1 GATTACATGTAAGACCATATCTAGGACATTGGCATCG-TATGT
* * * * *
38222037 CTATTTCGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGT
1 -GATTACATGTAAGACCATATCTAGGACATTGGCATCG-TATGT
*
38222081 GATAACATGTAAGACCATATCTAGGA
1 GATTACATGTAAGACCATATCTAGGA
38222107 TATAACATTG
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 89 0.96
44 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATATCTAGGACATTGGCATCGTATGT
Found at i:38226657 original size:44 final size:40
Alignment explanation
Indices: 38226537--38226680 Score: 126
Period size: 44 Copynumber: 3.4 Consensus size: 40
38226527 CTAGATGTGA
* * *
38226537 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGG
1 TCTTACACGAAATC-AA-ATCGATGCCAC-GTCCCAGACATGG
* * * *
38226580 TCTTACACGAAGTCAAATATGATGCCGATGTCCCTGACATGG
1 TCTTACACGAAATCAAAT-CGATGCC-ACGTCCCAGACATGG
* *
38226622 TCTTACATGTAAATCATAAGTCGATGCCAACGTCCCAGACGTGG
1 TCTTACACG-AAATCA-AA-TCGATGCC-ACGTCCCAGACATGG
38226666 TCTTACACGAAATCA
1 TCTTACACGAAATCA
38226681 CATATCGAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 10
0.76 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.33
43 23 0.28
44 28 0.35
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (40 bp):
TCTTACACGAAATCAAATCGATGCCACGTCCCAGACATGG
Found at i:38236976 original size:42 final size:42
Alignment explanation
Indices: 38236872--38236989 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
38236862 AGCTTATACA
* * *
38236872 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCTGACATGGTCTTACACGTAATCAAATATCG
*
38236915 ATGCCACTGT-CCTAAACATGGTCTTACACG-AAGTCAAATA-CG
1 ATGCCA-TGTCCCT-GACATGGTCTTACACGTAA-TCAAATATCG
*
38236957 ATGCTGATGTCCCTGACATGGTCTTACACGTAA
1 ATGC-CATGTCCCTGACATGGTCTTACACGTAA
38236990 ATCATAAGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCTGACATGGTCTTACACGTAATCAAATATCG
Found at i:38239824 original size:47 final size:47
Alignment explanation
Indices: 38239755--38240117 Score: 215
Period size: 46 Copynumber: 7.7 Consensus size: 47
38239745 GTATAATGCT
* *
38239755 GATGCCATGTACCAGACATGGTCTTACACTAGCTCATCCATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGCC
* * *
38239802 GATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCGAAATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATC--CATC-AAGCC
* * ** *
38239851 GATGCCATTTCCTAGACATGGTCTTACACTAGCTC-TCACAGATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--AT-CAAGCC
* * *
38239901 GATGCCATGTCCCAGACATGGTCTTACAAT-GACACAT-C-TCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATC-AAGCC
* * *
38239947 GATG-CATGTCCCAGAC-TTGTCTTACACTGGCTTACAT-C-TCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCATC-AAGCC
* * *
38239993 GATGCC-TGTCCGAGACAT-GTCTTGCATTAGCTC-TCGTC-TCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CATCAA-GCC
* *
38240039 GATGCCATGTCCCAGACATGGTCTTACATTGGCTC-T-CAT-AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAA----GCC
*
38240087 GATG-CATGTCCCAGACAT-GTCTTACAATAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
38240118 ACACAAAAAA
Statistics
Matches: 256, Mismatches: 33, Indels: 55
0.74 0.10 0.16
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 19 0.07
46 68 0.27
47 58 0.23
48 25 0.10
49 36 0.14
50 35 0.14
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGCC
Found at i:38239951 original size:96 final size:95
Alignment explanation
Indices: 38239755--38239933 Score: 245
Period size: 99 Copynumber: 1.8 Consensus size: 95
38239745 GTATAATGCT
*
38239755 GATGCCATGTACCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACA
1 GATGCCAT-TTCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACA
* *
38239820 TGGTCTTACACTGACTATCGAAATCGAGGCT
65 TGGTCTTACAATGACTATCGAAATCGAGGCC
*
38239851 GATGCCATTTCCTAGACATGGTCTTACACTAGCTC-TCACAGATC-CGTGCTGATGCCATGTCCC
1 GATGCCATTTCC-AGACATGGTCTTACACTAGCTCATC-C--ATCAAGT-C-GATGCCATGTCCC
38239914 AGACATGGTCTTACAATGAC
60 AGACATGGTCTTACAATGAC
38239934 ACATCTCGTA
Statistics
Matches: 74, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
95 5 0.07
96 31 0.42
97 2 0.03
98 4 0.05
99 32 0.43
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (95 bp):
GATGCCATTTCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACAT
GGTCTTACAATGACTATCGAAATCGAGGCC
Found at i:38244938 original size:40 final size:40
Alignment explanation
Indices: 38244841--38245019 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
38244831 CGAATGGTAT
* * *
38244841 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
38244882 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
38244922 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
38244962 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
38245002 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
38245020 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.77
41 25 0.21
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:38245044 original size:80 final size:80
Alignment explanation
Indices: 38244879--38245045 Score: 176
Period size: 80 Copynumber: 2.1 Consensus size: 80
38244869 TAAGTGACTA
* * * * * *
38244879 AAAT-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACA
* * *
38244943 TTCGTGCGAGTTACT
66 ATCGAGCGAGTCACT
* * *
38244958 AAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGAC
1 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAGAC
* *
38245022 AATCGAGCTAGTCGCT
65 AATCGAGCGAGTCACT
*
38245038 ATATCCGG
1 AAATCCGG
38245046 TTAAATTTCG
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
79 6 0.08
80 65 0.92
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACA
ATCGAGCGAGTCACT
Found at i:38248163 original size:40 final size:40
Alignment explanation
Indices: 38248069--38248249 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
38248059 TACTCGAATG
*
38248069 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
38248110 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
38248150 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * **
38248190 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
38248229 ATATCC-GGCTAAACCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
38248250 ATGCTTGATT
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 13 0.11
39 16 0.13
40 62 0.52
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Done.