Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 152 of 444
Found at i:41255955 original size:54 final size:54
Alignment explanation
Indices: 41255897--41256036 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
41255887 ATTACTGTTT
* ** *
41255897 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
41255951 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
41256005 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
41256037 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:41255955 original size:81 final size:81
Alignment explanation
Indices: 41255628--41255955 Score: 196
Period size: 81 Copynumber: 4.1 Consensus size: 81
41255618 ATTACCGTTT
* * * * * ***
41255628 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTAG-T
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCC-TAGAT
* * * ***
41255692 TTACAGAATTACTATTT
65 TTATAAAATTACCAAAA
* * * * ****
41255709 TACCCCCGATTTACAGAATTACCATTTTACCC-CGATTTACAGAATTACCGTTTTACCTCT-GAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACC-CTAGAT
* * * ****
41255772 TTACATAATTATCGTTT
65 TTATAAAATTACCAAAA
* **** *
41255789 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATT
* * ***
41255854 TATAGAATTACTATTT
66 TATAAAATTACCAAAA
* * * *
41255870 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-T
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCC-TAGAT
*
41255934 TTGTAAAATTACCAAAA
65 TTATAAAATTACCAAAA
41255951 TACCC
1 TACCC
41255956 CTAGTTTGTA
Statistics
Matches: 210, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.00
80 70 0.33
81 137 0.65
82 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATT
TATAAAATTACCAAAA
Found at i:41256059 original size:54 final size:53
Alignment explanation
Indices: 41255870--41256149 Score: 190
Period size: 54 Copynumber: 5.2 Consensus size: 53
41255860 ATTACTATTT
* * *** * ** *
41255870 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACA-AATTACAGAAATACCCTCAATTTGTAAAATTACCAAAA
* *
41255924 TACCCTTAGTTTGTA-AAATTACCA-AAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTT-GGTT-TACAAATTA-CAGAAATACCCTC-AATTTGTAAAATTACCAAAA
** *
41255978 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTT-ACAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAA
* * * * * *
41256032 TACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAA-TTACAGAAATACCC-TCAATTTGT-AAAATTACCA-AAA
* * * * * *
41256088 TACCATTGGTTTACAAAATTACTGAAATACCCTTAGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTAC-AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAA
*
41256142 CACCCTTG
1 TACCCTTG
41256150 TAGGATGAAA
Statistics
Matches: 177, Mismatches: 35, Indels: 28
0.74 0.15 0.12
Matches are distributed among these distances:
52 1 0.01
53 8 0.05
54 109 0.62
55 20 0.11
56 36 0.20
57 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (53 bp):
TACCCTTGGTTTACAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:41256060 original size:81 final size:81
Alignment explanation
Indices: 41255912--41256066 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
41255902 TCGATTTACA
* * * *
41255912 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
41255977 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
41255993 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
41256055 GAAATACCCTTG
64 -AAATACCCTTG
41256067 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:41256126 original size:27 final size:27
Alignment explanation
Indices: 41255910--41256148 Score: 171
Period size: 27 Copynumber: 8.8 Consensus size: 27
41255900 CCTCGATTTA
*
41255910 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* *
41255937 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* *
41255964 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
** * * *
41255991 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* * *
41256018 TAAAATTACCAAAATACCCCT-GATTTA
1 CAAAATTACCAAAATACCCTTAG-TTTG
* *
41256045 CAAAGTTA-CAGAAATACCCTTGACTTT-
1 CAAAATTACCA-AAATACCCTT-AGTTTG
* * * *
41256072 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACCA-AAATACCCTTAGTTTG
**
41256101 CAAAATTACTGAAATACCCTTAGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* * * *
41256128 TAGATTTACCAAAACACCCTT
1 CAAAATTACCAAAATACCCTT
41256149 GTAGGATGAA
Statistics
Matches: 169, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.01
27 142 0.84
28 7 0.04
29 18 0.11
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCTTAGTTTG
Found at i:41256244 original size:27 final size:27
Alignment explanation
Indices: 41256167--41256244 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
41256157 AAATGTCTAA
*
41256167 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
41256194 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
41256221 AATACCCCTATATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
41256245 GAATATGCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:41257436 original size:25 final size:24
Alignment explanation
Indices: 41257403--41257450 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
41257393 TTATAACATG
* * *
41257403 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
41257427 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
41257451 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:41257501 original size:9 final size:9
Alignment explanation
Indices: 41257489--41257545 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
41257479 TTTGATAAAC
41257489 ATGATATGT
1 ATGATATGT
*
41257498 ATGATATGCAC
1 ATGATATG--T
*
41257509 ATGACATGT
1 ATGATATGT
*
41257518 ATGATATGCAC
1 ATGATATG--T
41257529 ATGATATGT
1 ATGATATGT
41257538 ATGATATG
1 ATGATATG
41257546 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:41257512 original size:20 final size:20
Alignment explanation
Indices: 41257487--41257557 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
41257477 ATTTTGATAA
41257487 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
41257507 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
41257527 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
41257547 ACATGAGATGT
1 ACATGATATGT
41257558 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:41257534 original size:11 final size:11
Alignment explanation
Indices: 41257498--41257552 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
41257488 CATGATATGT
41257498 ATGATATGCAC
1 ATGATATGCAC
* *
41257509 ATGACATG--T
1 ATGATATGCAC
41257518 ATGATATGCAC
1 ATGATATGCAC
*
41257529 ATGATATG--T
1 ATGATATGCAC
41257538 ATGATATGCAC
1 ATGATATGCAC
41257549 ATGA
1 ATGA
41257553 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:41257639 original size:23 final size:24
Alignment explanation
Indices: 41257604--41257766 Score: 237
Period size: 23 Copynumber: 7.0 Consensus size: 24
41257594 AGGAAGTGCA
*
41257604 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41257628 -AAATGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41257651 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41257675 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41257698 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41257721 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41257744 AAAAGGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
41257767 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
22 1 0.01
23 89 0.70
24 37 0.29
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:41257673 original size:47 final size:47
Alignment explanation
Indices: 41257604--41257752 Score: 248
Period size: 47 Copynumber: 3.2 Consensus size: 47
41257594 AGGAAGTGCA
*
41257604 AAAAGGGCTTATGCCCTAGTTATTAAATGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
41257651 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
41257698 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCTAGTTATT-AAAGGGCTTATGCCCCAGTTATT
41257744 AAAAGGGCT
1 AAAAGGGCT
41257753 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
46 33 0.34
47 65 0.66
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:41257687 original size:70 final size:70
Alignment explanation
Indices: 41257604--41257766 Score: 233
Period size: 70 Copynumber: 2.3 Consensus size: 70
41257594 AGGAAGTGCA
* * *
41257604 AAAAGGGCTTATGCCCTAGTTATT-AAATGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCC
41257668 AGTTATT
64 AGTTATT
41257675 -AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
*
41257739 TTGTT
66 TTATT
*
41257744 AAAAGGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
41257767 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
69 16 0.19
70 60 0.71
71 8 0.10
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
TTATT
Found at i:41257994 original size:31 final size:31
Alignment explanation
Indices: 41257959--41258022 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
41257949 CGTTTACAGT
*
41257959 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
41257990 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
41258021 AA
1 AA
41258023 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:41261006 original size:27 final size:27
Alignment explanation
Indices: 41260689--41261005 Score: 404
Period size: 27 Copynumber: 11.7 Consensus size: 27
41260679 TACTGAAATG
** *
41260689 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
41260716 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
41260743 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
41260770 CCCT-TAGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
41260797 CCCCCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
41260824 CCCCCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
41260851 -CCTCTGATTTACATAATTATCGTTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
*
41260878 CCCTCGACTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
41260905 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
41260932 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
41260959 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
41260986 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
41261006 TAAAATACCC
Statistics
Matches: 259, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.02
27 250 0.97
28 5 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:41261014 original size:27 final size:27
Alignment explanation
Indices: 41260714--41261150 Score: 139
Period size: 27 Copynumber: 16.2 Consensus size: 27
41260704 ATTACCGTTT
* ***
41260714 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
41260741 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
41260768 TACCCT-TAGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * ***
41260795 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
41260822 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
41260849 TA-CCTCTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAAAATTACCAAAA
* * ****
41260876 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
41260903 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
41260930 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * *****
41260957 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
41260984 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41261011 TACCCTTG-TTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41261037 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *** *
41261064 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41261091 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
41261118 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
41261145 TACCCT
1 TACCCT
41261151 TGACTTTCTA
Statistics
Matches: 353, Mismatches: 47, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
26 27 0.08
27 321 0.91
28 5 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:41261094 original size:54 final size:55
Alignment explanation
Indices: 41260998--41261235 Score: 207
Period size: 54 Copynumber: 4.4 Consensus size: 55
41260988 CTCGATTTAC
* *
41260998 AAAATTACTAAAATACCCTT-GTTTGTAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* *
41261051 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * ** * * * * * *
41261105 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * ** * * *
41261160 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATA-CCTTTAGTTTGT
1 -AAAATTACCA-AAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * *
41261215 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
41261236 TAGGATGAAA
Statistics
Matches: 150, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
53 23 0.15
54 74 0.49
55 19 0.13
56 34 0.23
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (55 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
Found at i:41261315 original size:27 final size:26
Alignment explanation
Indices: 41261253--41261330 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
41261243 AAATGTCTAA
*
41261253 AATACCCCTATTAGGTAAAAAGACCGT
1 AATACCCCTA-TAGGTAAAATGACCGT
* *
41261280 AA-AGACCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATA-GGTAAAATGACCGT
*
41261307 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATA-GGTAAAATGAC
41261331 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (26 bp):
AATACCCCTATAGGTAAAATGACCGT
Found at i:41262519 original size:25 final size:24
Alignment explanation
Indices: 41262486--41262533 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
41262476 TTATAACATG
* * *
41262486 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
41262510 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
41262534 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:41262677 original size:23 final size:24
Alignment explanation
Indices: 41262646--41262809 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
41262636 GGGAAGTGCA
*
41262646 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41262670 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41262693 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41262717 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41262740 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41262763 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41262786 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
41262810 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
23 85 0.66
24 37 0.29
25 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:41262715 original size:47 final size:47
Alignment explanation
Indices: 41262646--41262795 Score: 250
Period size: 47 Copynumber: 3.2 Consensus size: 47
41262636 GGGAAGTGCA
41262646 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
41262693 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
41262740 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCTAGTTATT-AAAGGGCTTATGCCCCAGTTATT
41262786 AAAAGAGGCT
1 AAAAG-GGCT
41262796 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
46 29 0.29
47 70 0.71
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:41262760 original size:70 final size:69
Alignment explanation
Indices: 41262647--41262788 Score: 232
Period size: 70 Copynumber: 2.0 Consensus size: 69
41262637 GGAAGTGCAA
* *
41262647 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAG
41262712 TTATT
65 TTATT
41262717 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
*
41262781 TTGTT
65 TTATT
41262786 AAA
1 AAA
41262789 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
69 14 0.21
70 45 0.66
71 9 0.13
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (69 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGT
TATT
Found at i:41263037 original size:30 final size:31
Alignment explanation
Indices: 41263001--41263063 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
41262991 CATTTACAGT
*
41263001 AAAGGCTTC-GCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
41263031 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
41263062 AA
1 AA
41263064 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 9 0.31
31 20 0.69
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:41266048 original size:27 final size:27
Alignment explanation
Indices: 41265732--41266047 Score: 404
Period size: 27 Copynumber: 11.7 Consensus size: 27
41265722 TACTGAAATG
** *
41265732 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
41265759 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
41265786 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
41265813 CCCT-TAGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
41265840 CCCCCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
41265867 CCC-CGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
41265893 -CCTCTGATTTACATAATTATCGTTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
*
41265920 CCCTCGACTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
41265947 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
41265974 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
41266001 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
41266028 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
41266048 TAAAATACCC
Statistics
Matches: 258, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
25 2 0.01
26 24 0.09
27 227 0.88
28 5 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:41266056 original size:27 final size:27
Alignment explanation
Indices: 41265757--41266192 Score: 139
Period size: 27 Copynumber: 16.2 Consensus size: 27
41265747 ATTACCGTTT
* ***
41265757 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
41265784 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
41265811 TACCCT-TAGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * ***
41265838 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
41265865 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
41265891 TA-CCTCTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAAAATTACCAAAA
* * ****
41265918 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
41265945 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
41265972 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * *****
41265999 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
41266026 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41266053 TACCCTTG-TTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41266079 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *** *
41266106 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
41266133 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
41266160 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
41266187 TACCCT
1 TACCCT
41266193 TGACTTTCTA
Statistics
Matches: 352, Mismatches: 46, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 47 0.13
27 298 0.85
28 5 0.01
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:41266136 original size:54 final size:55
Alignment explanation
Indices: 41266040--41266277 Score: 207
Period size: 54 Copynumber: 4.4 Consensus size: 55
41266030 CTCGATTTAC
* *
41266040 AAAATTACTAAAATACCCTT-GTTTGTAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* *
41266093 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * ** * * * * * *
41266147 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * ** * * *
41266202 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATA-CCTTTAGTTTGT
1 -AAAATTACCA-AAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
* * *
41266257 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
41266278 TAGGATGAAA
Statistics
Matches: 150, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
53 23 0.15
54 74 0.49
55 19 0.13
56 34 0.23
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (55 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCCTCAGTTTGT
Found at i:41266357 original size:27 final size:26
Alignment explanation
Indices: 41266295--41266372 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
41266285 AAATGTCTAA
*
41266295 AATACCCCTATTAGGTAAAAAGACCGT
1 AATACCCCTA-TAGGTAAAATGACCGT
* *
41266322 AA-AGACCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATA-GGTAAAATGACCGT
*
41266349 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATA-GGTAAAATGAC
41266373 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (26 bp):
AATACCCCTATAGGTAAAATGACCGT
Found at i:41267564 original size:25 final size:24
Alignment explanation
Indices: 41267531--41267578 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
41267521 TTATAACATG
* * *
41267531 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
41267555 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
41267579 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:41267723 original size:23 final size:24
Alignment explanation
Indices: 41267692--41267855 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
41267682 TGGAAGTGCA
*
41267692 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41267716 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41267739 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41267763 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41267786 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41267809 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
41267832 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
41267856 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
23 85 0.66
24 37 0.29
25 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:41267761 original size:47 final size:47
Alignment explanation
Indices: 41267692--41267841 Score: 250
Period size: 47 Copynumber: 3.2 Consensus size: 47
41267682 TGGAAGTGCA
41267692 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
41267739 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
41267786 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCTAGTTATT-AAAGGGCTTATGCCCCAGTTATT
41267832 AAAAGAGGCT
1 AAAAG-GGCT
41267842 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
46 29 0.29
47 70 0.71
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:41267806 original size:70 final size:69
Alignment explanation
Indices: 41267693--41267834 Score: 232
Period size: 70 Copynumber: 2.0 Consensus size: 69
41267683 GGAAGTGCAA
* *
41267693 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAG
41267758 TTATT
65 TTATT
41267763 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
*
41267827 TTGTT
65 TTATT
41267832 AAA
1 AAA
41267835 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
69 14 0.21
70 45 0.66
71 9 0.13
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (69 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGT
TATT
Found at i:41268086 original size:31 final size:31
Alignment explanation
Indices: 41268048--41268111 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
41268038 CATTTACAGT
*
41268048 AAAGGCTTCAGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
41268079 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
41268110 AA
1 AA
41268112 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:41271913 original size:45 final size:45
Alignment explanation
Indices: 41271863--41271951 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
41271853 AAAACATGTG
* *
41271863 TCACATATATCACGAACTCAGACCATAACTCAATGAGTTCAGATA
1 TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGATA
* * * *
41271908 TCACATATATCATGAGCTCAAACCACAACTCAGTGAGTTTAGAT
1 TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGAT
41271952 TACATAAGTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (45 bp):
TCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAGATA
Found at i:41293543 original size:85 final size:85
Alignment explanation
Indices: 41293419--41293574 Score: 183
Period size: 85 Copynumber: 1.8 Consensus size: 85
41293409 TGTGTTCTCA
* * ** * **
41293419 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTATGTGTAA-ACCATGTTTAGGACG
1 TGTAAGACCACGTCTGGGAAAGTGGCATCGACTTATGA-TTACATGTAATACCACGCCTAGGACG
41293483 TTGGCATCGTATTTGATTTCG
65 TTGGCATCGTATTTGATTTCG
* *
41293504 TGTAAGACC-CTGTCTGGGAAAGTGGCATTGA-TATTTGATTACATGTAATACCACGCCTAGGAC
1 TGTAAGACCAC-GTCTGGGAAAGTGGCATCGACT-TATGATTACATGTAATACCACGCCTAGGAC
41293567 GTTGGCAT
64 GTTGGCAT
41293575 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
84 10 0.17
85 49 0.83
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGAAAGTGGCATCGACTTATGATTACATGTAATACCACGCCTAGGACGT
TGGCATCGTATTTGATTTCG
Found at i:41297566 original size:28 final size:27
Alignment explanation
Indices: 41297503--41297572 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
41297493 ATAGTGAGTC
41297503 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
41297530 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
41297558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41297573 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:41301801 original size:40 final size:40
Alignment explanation
Indices: 41301756--41301885 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
41301746 CGGAATACAA
41301756 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
41301796 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
41301836 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
41301876 CCGGATATAA
1 CCGGATATAA
41301886 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:41301900 original size:40 final size:40
Alignment explanation
Indices: 41301756--41301919 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
41301746 CGGAATACAA
* **
41301756 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
41301796 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
41301836 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
41301876 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
41301916 CCGG
1 CCGG
41301920 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:41308742 original size:28 final size:27
Alignment explanation
Indices: 41308679--41308748 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
41308669 ATAGTGAGTC
41308679 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
41308706 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
41308734 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41308749 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:41310747 original size:29 final size:27
Alignment explanation
Indices: 41310712--41310773 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 27
41310702 AGTTATACCG
41310712 ATTTGGCTTC-GAGCCATGAATATCGACTA
1 ATTTGGCTTCAG-GCCATG-ATATC-ACTA
*
41310741 ATTTGGCTTCAGGCCATGATATCAGTA
1 ATTTGGCTTCAGGCCATGATATCACTA
41310768 ATTTGG
1 ATTTGG
41310774 TTTAAGCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 9 0.29
28 5 0.16
29 16 0.52
30 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (27 bp):
ATTTGGCTTCAGGCCATGATATCACTA
Found at i:41312644 original size:26 final size:26
Alignment explanation
Indices: 41312614--41312679 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
41312604 CCAGAGCTTA
41312614 TGATTAAAGGCTCTTCGT-AAGCTTCC
1 TGATTAAAGGCTCTTCGTGAA-CTTCC
* * *
41312640 TGATTAAAAGTTCTTTGTGAACTTCC
1 TGATTAAAGGCTCTTCGTGAACTTCC
*
41312666 TGATT-ATGGCTCTT
1 TGATTAAAGGCTCTT
41312680 ATGAGCTTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 6 0.18
26 25 0.76
27 2 0.06
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (26 bp):
TGATTAAAGGCTCTTCGTGAACTTCC
Found at i:41312773 original size:26 final size:26
Alignment explanation
Indices: 41312651--41312775 Score: 86
Period size: 26 Copynumber: 5.0 Consensus size: 26
41312641 GATTAAAAGT
* *
41312651 TCTTTGTGAACTTCCTGAT-TATGGC
1 TCTTTGTGAGCTTCCTGTTATATGGC
* * *
41312676 TC-TTATGAGCTTTCTGTTATATAGC
1 TCTTTGTGAGCTTCCTGTTATATGGC
* * *
41312701 -C-TGGATAAGCTTCATG--ATA-GGC
1 TCTTTG-TGAGCTTCCTGTTATATGGC
* *
41312723 TCTTTGTGAGATTCCCGATTA-ATGGC
1 TCTTTGTGAGCTTCCTG-TTATATGGC
41312749 TCTTTGTGAGCTTCCTGTTATATGGC
1 TCTTTGTGAGCTTCCTGTTATATGGC
41312775 T
1 T
41312776 TGAGAGAGGA
Statistics
Matches: 73, Mismatches: 18, Indels: 17
0.68 0.17 0.16
Matches are distributed among these distances:
22 2 0.03
23 11 0.15
24 16 0.22
25 19 0.26
26 25 0.34
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (26 bp):
TCTTTGTGAGCTTCCTGTTATATGGC
Found at i:41316724 original size:29 final size:29
Alignment explanation
Indices: 41316691--41316821 Score: 138
Period size: 29 Copynumber: 4.5 Consensus size: 29
41316681 TGACGAGATC
*
41316691 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
* *
41316720 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
* * **
41316749 GGCACTAAGTGTGCGAGCTCGAAAGGCAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
** * * *
41316778 GGCACTGTGTGTGCGGGCT-TAAATCGCAT
1 GGCACTAAGTGTGCGTGCTGGAAAT-ACAT
41316807 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
41316822 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 3 0.03
29 84 0.97
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATACAT
Found at i:41339928 original size:35 final size:35
Alignment explanation
Indices: 41339862--41339929 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
41339852 ACATATTCAT
*
41339862 GATCAATTCCATATTAATATAGGTCTTATAGGTAA
1 GATCAATTCCATATTAATATAGGTCTCATAGGTAA
*
41339897 GATCAATTCCATATTAATGTA-GTCATCATAGGT
1 GATCAATTCCATATTAATATAGGTC-TCATAGGT
41339930 GCTTTACATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 3 0.10
35 27 0.90
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (35 bp):
GATCAATTCCATATTAATATAGGTCTCATAGGTAA
Found at i:41341794 original size:12 final size:12
Alignment explanation
Indices: 41341777--41341804 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
41341767 AGGTACGTGG
41341777 TTCTTCTCAGTT
1 TTCTTCTCAGTT
41341789 TTCTTCTCAGTT
1 TTCTTCTCAGTT
41341801 TTCT
1 TTCT
41341805 CTCTGTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.07, T:0.61
Consensus pattern (12 bp):
TTCTTCTCAGTT
Found at i:41351545 original size:2 final size:2
Alignment explanation
Indices: 41351538--41351567 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
41351528 GCTCTTGAAC
41351538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41351568 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41352370 original size:40 final size:41
Alignment explanation
Indices: 41352276--41352420 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 41
41352266 TACTCGAATG
* * *
41352276 ATATCCGGGCT-AGGTCCCGAAGGCTTTTGTGCTAAGCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCT-AGCGACT
* *
41352317 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
* * *
41352357 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
41352397 ATATCCGGGCTAAGA-CCCGAAGGC
1 ATATCCGGGCTAAGATCCCGAAGGC
41352421 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 25 0.27
42 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
Found at i:41357765 original size:39 final size:40
Alignment explanation
Indices: 41357639--41357820 Score: 160
Period size: 40 Copynumber: 4.6 Consensus size: 40
41357629 GACTCACTCA
*
41357639 AATGCCTTCGGGAC-AAAGCCCGG-TTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCACG
* *
41357679 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* * *
41357719 AATGCCTTCGGG-CTTAGCTCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* ** * * **
41357758 AACGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACG
*
41357798 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
41357821 CATCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 46 0.38
40 64 0.53
41 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:41365747 original size:39 final size:40
Alignment explanation
Indices: 41365626--41365816 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
41365616 GGATATAACG
* **
41365626 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
41365666 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
41365706 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
41365745 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
**
41365785 ACTTACACAAA-GCCTTCGGGACTTAGCCCGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
41365817 CATCATTCAA
Statistics
Matches: 128, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.02
39 47 0.37
40 77 0.60
41 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:41365747 original size:79 final size:81
Alignment explanation
Indices: 41365601--41365816 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 81
41365591 GAATCACGTA
*** * **
41365601 CTTCGGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATA
1 CTTCGG-ATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
*
41365663 GTAACTCGCACGAATGC
65 GTAACTCGCACGAACGC
* *
41365680 CTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TA
1 CTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
*
41365742 TTAACTCGCACGAACGC
65 GTAACTCGCACGAACGC
** * **
41365759 CTTCGGATCTTAGTCCGGATATAGTCACTTACACAAA-GCCTTCGGGACTTAGCCCGGA
1 CTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
41365817 CATCATTCAA
Statistics
Matches: 114, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 12 0.11
79 71 0.62
80 31 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAG
TAACTCGCACGAACGC
Found at i:41373635 original size:40 final size:40
Alignment explanation
Indices: 41373591--41373729 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
41373581 GGATATAACG
*
41373591 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
41373631 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * *
41373671 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* *
41373710 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
41373730 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.38
40 49 0.56
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:41373712 original size:79 final size:81
Alignment explanation
Indices: 41373591--41373782 Score: 223
Period size: 79 Copynumber: 2.4 Consensus size: 81
41373581 GGATATAACG
* ** *
41373591 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTC-GGATC
* *
41373654 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
41373671 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAACGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
** *
41373734 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
**
41373750 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
41373783 CATCATTCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.55
80 40 0.42
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:41381727 original size:39 final size:40
Alignment explanation
Indices: 41381613--41381797 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
41381603 ACGACTCACT
**
41381613 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
41381653 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
41381693 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * **
41381732 CGAACGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
41381773 CCAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41381798 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:41389320 original size:46 final size:45
Alignment explanation
Indices: 41389213--41389429 Score: 161
Period size: 46 Copynumber: 4.7 Consensus size: 45
41389203 AGGTGCAGGT
* * ***
41389213 GCCGATGCCATGTCTCAGACAAGGTCTTACACT-GACACATCTCGTA-
1 GCCGATG-CATGTCCCAGAC-ATGTCTTACACTGGGTTCATCTCG-AG
* * *
41389259 GCTGATACATATCCCAGACATGTCTTACACTGGGTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGGTT-CATCTCGAG
* *** * * *
41389305 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGGTTCATCTCGAG
* * * *
41389351 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGGT-TCAT-CTCGAG
41389399 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
41389430 AGCACACAAA
Statistics
Matches: 134, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
44 11 0.08
45 12 0.09
46 61 0.46
47 30 0.22
48 19 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGGTTCATCTCGAG
Found at i:41389885 original size:16 final size:16
Alignment explanation
Indices: 41389861--41389893 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
41389851 CTCCCAATTA
41389861 AAGAATTTTGCACTTT
1 AAGAATTTTGCACTTT
*
41389877 AAGACTTTTGCACTTT
1 AAGAATTTTGCACTTT
41389893 A
1 A
41389894 TGTTATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (16 bp):
AAGAATTTTGCACTTT
Found at i:41392843 original size:21 final size:21
Alignment explanation
Indices: 41392817--41392860 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
41392807 TAGACACAGC
**
41392817 GGGTGTTGAGTTTTTGAGATT
1 GGGTGTTGAGTTTCGGAGATT
41392838 GGGTGTTGAGTTTCGGAGATT
1 GGGTGTTGAGTTTCGGAGATT
41392859 GG
1 GG
41392861 TTGTAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (21 bp):
GGGTGTTGAGTTTCGGAGATT
Found at i:41397538 original size:23 final size:23
Alignment explanation
Indices: 41397495--41397537 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
41397485 AATATAAAAC
41397495 AAAAAAAAATATGAAGTTTTTAG
1 AAAAAAAAATATGAAGTTTTTAG
*
41397518 AAAAAAAAAT-TTAAGTTTTT
1 AAAAAAAAATATGAAGTTTTT
41397538 TTGTCTCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (23 bp):
AAAAAAAAATATGAAGTTTTTAG
Found at i:41397897 original size:2 final size:2
Alignment explanation
Indices: 41397890--41397969 Score: 160
Period size: 2 Copynumber: 40.0 Consensus size: 2
41397880 CTCTATGTGG
41397890 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41397932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41397970 GGGAGAAATC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 78 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41398116 original size:24 final size:24
Alignment explanation
Indices: 41398084--41398133 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
41398074 TATATAGATC
41398084 ATATACCCATCTCCATTCATATGA
1 ATATACCCATCTCCATTCATATGA
41398108 ATATACCCATCTCCATTCATATGA
1 ATATACCCATCTCCATTCATATGA
41398132 AT
1 AT
41398134 CATGCATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (24 bp):
ATATACCCATCTCCATTCATATGA
Found at i:41401984 original size:39 final size:39
Alignment explanation
Indices: 41401936--41402014 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
41401926 AAAAGAAAGT
* *
41401936 AAGAATAACTAGTTATGGGTTCCAACTTATAGTAAGAAA
1 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
41401975 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
1 AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
41402014 A
1 A
41402015 TAGATGGATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.25
Consensus pattern (39 bp):
AAGAATAACTAGTTATGGGCTCCAACTAATAGTAAGAAA
Found at i:41403198 original size:8 final size:8
Alignment explanation
Indices: 41403185--41403209 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
41403175 AATAAAAAAA
41403185 ATTAAATT
1 ATTAAATT
41403193 ATTAAATT
1 ATTAAATT
41403201 ATTAAATT
1 ATTAAATT
41403209 A
1 A
41403210 AAATTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTAAATT
Found at i:41404022 original size:2 final size:2
Alignment explanation
Indices: 41404015--41404039 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
41404005 AGGGAGACAA
41404015 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
41404040 AAACTGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41405731 original size:18 final size:17
Alignment explanation
Indices: 41405705--41405753 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
41405695 GTAAGGGTAA
*
41405705 ATTTTATTTTTTAATATT
1 ATTTAATTTTTTAAT-TT
41405723 ATTTAATTTTTATAATTT
1 ATTTAATTTTT-TAATTT
*
41405741 AATTAATATTTTT
1 ATTTAAT-TTTTT
41405754 TATAATAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 19 0.70
19 8 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTAATTTTTTAATTT
Found at i:41407762 original size:22 final size:22
Alignment explanation
Indices: 41407722--41407786 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
41407712 CTGCGATATT
* * * *
41407722 TACGGCCTTTAGCCATTCTTTC
1 TACGGCGTTAAGCCGTTCTGTC
* *
41407744 TATGGCGTTGAGCCGTTCTGTC
1 TACGGCGTTAAGCCGTTCTGTC
*
41407766 TACGGCGTTAAGTCGTTCTGT
1 TACGGCGTTAAGCCGTTCTGT
41407787 TAACTTAGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (22 bp):
TACGGCGTTAAGCCGTTCTGTC
Found at i:41410514 original size:22 final size:22
Alignment explanation
Indices: 41410486--41410528 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
41410476 TGCTGCGATA
*
41410486 TTTATGGCCTTT-AGTCGTTCTG
1 TTTATGG-CTTTGAGCCGTTCTG
41410508 TTTATGGCTTTGAGCCGTTCT
1 TTTATGGCTTTGAGCCGTTCT
41410529 ATTGACTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.09, C:0.19, G:0.23, T:0.49
Consensus pattern (22 bp):
TTTATGGCTTTGAGCCGTTCTG
Found at i:41410712 original size:33 final size:33
Alignment explanation
Indices: 41410665--41410729 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
41410655 ATATCTGCAT
*
41410665 CTGATACTGATTCTA-TATTGGGCTAAAGCCCAC
1 CTGATACTGATTCTACGA-TGGGCTAAAGCCCAC
* *
41410698 CTGATACTGTTTCTACGATGGGCTCAAGCCCA
1 CTGATACTGATTCTACGATGGGCTAAAGCCCA
41410730 ATCTGTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (33 bp):
CTGATACTGATTCTACGATGGGCTAAAGCCCAC
Found at i:41411452 original size:7 final size:7
Alignment explanation
Indices: 41411437--41411467 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
41411427 AACATAGTTG
*
41411437 ATTTCGT
1 ATTTAGT
41411444 ATTTAGT
1 ATTTAGT
41411451 ATTTAGT
1 ATTTAGT
41411458 ATTTAGT
1 ATTTAGT
41411465 ATT
1 ATT
41411468 ATGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (7 bp):
ATTTAGT
Found at i:41412646 original size:58 final size:59
Alignment explanation
Indices: 41412470--41412648 Score: 234
Period size: 59 Copynumber: 3.1 Consensus size: 59
41412460 ATTGATTTAT
* * * *
41412470 TTTTGAATATTTTTGTTCAAATTATTTTTATATTGTTTCATTTAATAAAGTATAAGTTA
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
* * * *
41412529 TTTTGAAAATTTTTGTAAAAATTATTTTTATATTATTTCATTTAATAAAATAGATGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
* ** * *
41412588 TTTTGAATATTTTTGTACAAATCA-AATAATATTGTTTCATTTAATAAATTAGAAGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
41412646 TTT
1 TTT
41412649 CAATGTGGAC
Statistics
Matches: 103, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
58 31 0.30
59 72 0.70
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
Found at i:41413976 original size:13 final size:13
Alignment explanation
Indices: 41413954--41413986 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
41413944 AAGGGTTTGT
41413954 TTAT-TAAACTAA
1 TTATCTAAACTAA
41413966 TTATCTAAACTAA
1 TTATCTAAACTAA
*
41413979 TTAACTAA
1 TTATCTAA
41413987 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:41415644 original size:37 final size:38
Alignment explanation
Indices: 41415603--41415678 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
41415593 ATGGTTGTAA
*
41415603 CGGGGTTTAGGAGAC-AAGGTTGGAATCGCGATAATTT
1 CGGGGTTTAGGAGACAAAGGTTAGAATCGCGATAATTT
41415640 CGGGGTTTAGGAGACAAAGGTTAGAATCGCGATAATTT
1 CGGGGTTTAGGAGACAAAGGTTAGAATCGCGATAATTT
41415678 C
1 C
41415679 AATATATTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 15 0.41
38 22 0.59
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (38 bp):
CGGGGTTTAGGAGACAAAGGTTAGAATCGCGATAATTT
Found at i:41427531 original size:30 final size:30
Alignment explanation
Indices: 41427490--41427578 Score: 101
Period size: 29 Copynumber: 3.0 Consensus size: 30
41427480 AAAAAAAATC
* *
41427490 CATCTCATCAAAATAATTTTTTTCAGAACA
1 CATCTCGTCAAAATTATTTTTTTCAGAACA
* *
41427520 CAT-TACGTCAAATTTA-TTTTTTCAGAACC
1 CATCT-CGTCAAAATTATTTTTTTCAGAACA
* *
41427549 CATCTTGTCAAAATTATTTTTTCCAGAACA
1 CATCTCGTCAAAATTATTTTTTTCAGAACA
41427579 ATACTTAGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
29 25 0.52
30 23 0.48
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (30 bp):
CATCTCGTCAAAATTATTTTTTTCAGAACA
Found at i:41429193 original size:43 final size:43
Alignment explanation
Indices: 41429140--41429247 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
41429130 GCCCATGTTT
*
41429140 CCAGACCGTGTACAATTTGAAATAGGGTCACACGGCCATGTCG
1 CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
** * * *
41429183 CCAGACCGTGTACGATTCAAAATAGGGTCACGCGGCTATGTGG
1 CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
* *
41429226 CTAGACCGTCTACGATTTGAAA
1 CCAGACCGTGTACGATTTGAAA
41429248 CAGTGTAACA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (43 bp):
CCAGACCGTGTACGATTTGAAATAGGGTCACACGGCCATGTCG
Found at i:41433029 original size:39 final size:39
Alignment explanation
Indices: 41432908--41433046 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 39
41432898 GGATATAACG
* ** *
41432908 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
41432948 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* *
41432988 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
41433027 ACTCGCACGAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
41433047 ATCCTAGTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 48 0.56
41 4 0.05
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:41434898 original size:40 final size:40
Alignment explanation
Indices: 41434778--41434909 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
41434768 GTCACAGATT
41434778 CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-C
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAG-TCC
* *
41434818 CGAAGGCATTTGTGCGAGTTACTAAATCTGGATTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGTCC
* * * *
41434858 CGAAGGCCTTTGTGCGAGCTACTATAA-CCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGTCC
*
41434898 CGAAGGTATTTG
1 CGAAGGCATTTG
41434910 AACGAGTAGC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 77 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGTCC
Found at i:41440348 original size:25 final size:25
Alignment explanation
Indices: 41440314--41440361 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
41440304 CGAGGATAAT
41440314 TCAGATACTTGAGGATATGTTGATG
1 TCAGATACTTGAGGATATGTTGATG
41440339 TCAGATACTTGAGGATATGTTGA
1 TCAGATACTTGAGGATATGTTGA
41440362 GATGTTGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (25 bp):
TCAGATACTTGAGGATATGTTGATG
Found at i:41443342 original size:54 final size:54
Alignment explanation
Indices: 41443284--41443455 Score: 177
Period size: 54 Copynumber: 3.2 Consensus size: 54
41443274 CAACTTGTAA
* *
41443284 AATTACCAAAGTACTCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACTCCCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
* *** * ** *
41443338 AATTATCGTTTTACTCTCGATTTTTAAAATTACCGTTTTACCTTCGATTTACAG
1 AATTACCAAATTACTCCCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
*** * *
41443392 AATTACCGTTTTAC-CCTC-AGTTTACAAAATTACCATTTTACCCTCGATTTACAA
1 AATTACCAAATTACTCC-CGA-TTTACAAAATTACCGTTTTACCCTCGATTTACAG
41443446 AATTACCAAA
1 AATTACCAAA
41443456 ATACCCCTAG
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.02
54 94 0.98
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCAAATTACTCCCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
Found at i:41443392 original size:81 final size:81
Alignment explanation
Indices: 41443301--41443452 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
41443291 AAAGTACTCC
* * * * **
41443301 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTATCGTTTTACTCTCGATTTTTAA
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACCATTTTACCCTCGATTTACAA
41443365 AATTACCGTTTTACCTT
65 AATTACCGTTTTACCTT
41443382 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTTACAAA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTTACAAA
41443447 ATTACC
66 ATTACC
41443453 AAAATACCCC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTTACAAA
ATTACCGTTTTACCTT
Found at i:41443453 original size:27 final size:27
Alignment explanation
Indices: 41443301--41443452 Score: 207
Period size: 27 Copynumber: 5.6 Consensus size: 27
41443291 AAAGTACTCC
*
41443301 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* * *
41443328 CGATTTACAGAATTATCGTTTTACTCT
1 CGATTTACAAAATTACCGTTTTACCCT
** *
41443355 CGATTTTTAAAATTACCGTTTTACCTT
1 CGATTTACAAAATTACCGTTTTACCCT
*
41443382 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
*
41443409 C-AGTTTACAAAATTACCATTTTACCCT
1 CGA-TTTACAAAATTACCGTTTTACCCT
41443436 CGATTTACAAAATTACC
1 CGATTTACAAAATTACC
41443453 AAAATACCCC
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCCT
Found at i:41443460 original size:27 final size:27
Alignment explanation
Indices: 41443282--41443596 Score: 124
Period size: 27 Copynumber: 11.7 Consensus size: 27
41443272 CTCAACTTGT
*
41443282 AAAATTACCAAAGTACTCC-CGATTTAC
1 AAAATTACCAAAATAC-CCTCGATTTAC
* ****
41443309 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * **** * **
41443336 AGAATTATCGTTTTACTCTCGATTTTT
1 AAAATTACCAAAATACCCTCGATTTAC
**** *
41443363 AAAATTACCGTTTTACCTTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
41443390 AGAATTACCGTTTTACCCTC-AGTTTAC
1 AAAATTACCAAAATACCCTCGA-TTTAC
***
41443417 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *
41443444 AAAATTACCAAAATACCCCTAGGTTGT--
1 AAAATTACCAAAATA-CCCTCGATT-TAC
* * *
41443471 AAAACTACCAAAATACCC-CTGGTTTGC
1 AAAATTACCAAAATACCCTC-GATTTAC
* *
41443498 AAAATTACCAAAATATCCCT-GGTTTGC
1 AAAATTACCAAAATA-CCCTCGATTTAC
* **
41443525 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* *
41443552 AAAATTACCAAAATACCCAT-GGTTTGC
1 AAAATTACCAAAATACCC-TCGATTTAC
* *
41443579 AAAATTTCTAAAATACCC
1 AAAATTACCAAAATACCC
41443597 CTGTAGGGTA
Statistics
Matches: 243, Mismatches: 31, Indels: 28
0.80 0.10 0.09
Matches are distributed among these distances:
25 1 0.00
26 13 0.05
27 217 0.89
28 11 0.05
29 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:41443488 original size:81 final size:81
Alignment explanation
Indices: 41443405--41443599 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 81
41443395 TACCGTTTTA
***
41443405 CCCTCAGTTTACAAAATTACCATTTTA-CCCTCGATTTACAAAATTACCAAAATACCCCTAGG-T
1 CCCT-AGTTTACAAAATTACCAAAATATCCCT-GATTTACAAAATTACCAAAATACCCCT-GGTT
41443468 TGTAAAACTACCAAAATAC
63 TGTAAAACTACCAAAATAC
* * * *
41443487 CCCTGGTTTGCAAAATTACCAAAATATCCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
1 CCCTAGTTTACAAAATTACCAAAATATCCCTGATTTACAAAATTACCAAAATACCCCTGGTTTGT
*
41443552 AAAATTACCAAAATAC
66 AAAACTACCAAAATAC
* * * * * *
41443568 CCATGGTTTGCAAAATTTCTAAAATACCCCTG
1 CCCTAGTTTACAAAATTACCAAAATATCCCTG
41443600 TAGGGTAAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
80 2 0.02
81 89 0.90
82 8 0.08
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (81 bp):
CCCTAGTTTACAAAATTACCAAAATATCCCTGATTTACAAAATTACCAAAATACCCCTGGTTTGT
AAAACTACCAAAATAC
Found at i:41443608 original size:54 final size:53
Alignment explanation
Indices: 41443444--41443623 Score: 229
Period size: 54 Copynumber: 3.3 Consensus size: 53
41443434 CTCGATTTAC
* * *
41443444 AAAATTACCAAAATACCCCTAGG-TTGTAAAACTACCAAAATACCCCTGGTTTGC
1 AAAATTACCAAAATA-CCCT-GGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
41443498 AAAATTACCAAAATATCCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
* * **
41443552 AAAATTACCAAAATACCCATGGTTTGCAAAATTTCTAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCC-TGGTTTGCAAAATTACCAAAATACCCCTGGT-TTGT
*
41443606 AAAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
41443624 CTGTAAGGTA
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
53 7 0.06
54 107 0.94
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.26
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTGGTTTGCAAAATTACCAAAATACCCCTGGTTTGT
Found at i:41443609 original size:27 final size:27
Alignment explanation
Indices: 41443444--41443642 Score: 122
Period size: 27 Copynumber: 7.4 Consensus size: 27
41443434 CTCGATTTAC
*
41443444 AAAATTACCAAAATACCCCTAGGT--TGT
1 AAAATTACCAAAATACCCCT--GTAAGGT
* ** *
41443471 AAAACTACCAAAATACCCCTGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAAGGT
* ** *
41443498 AAAATTACCAAAATATCCCTGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAAGGT
**
41443525 AAAATTACCAAAATACCCCTGGT-TTGT
1 AAAATTACCAAAATACCCCT-GTAAGGT
* ** *
41443552 AAAATTACCAAAATACCCATGGT-TTGC
1 AAAATTACCAAAATACCCCT-GTAAGGT
* * *
41443579 AAAATTTCTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAAGGT
*
41443606 AAAATTACCGAAATACCCCTGTAAGGT
1 AAAATTACCAAAATACCCCTGTAAGGT
*
41443633 AGAATTACCA
1 AAAATTACCA
41443643 TTTTTCCCCT
Statistics
Matches: 150, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 5 0.03
27 145 0.97
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGTAAGGT
Found at i:41443610 original size:81 final size:80
Alignment explanation
Indices: 41443443--41443626 Score: 253
Period size: 81 Copynumber: 2.3 Consensus size: 80
41443433 CCTCGATTTA
*
41443443 CAAAATTACCAAAATACCCCTAGGTTGTAAAACTACCAAAATACCCCTGGTTTGCAAAATTACCA
1 CAAAATTACCAAAATACCCCT-GGTTGTAAAACTACCAAAATACCCATGGTTTGCAAAATTACCA
* **
41443508 AAATATCCCTGGTTTG
65 AAATACCCCTGGTGGG
* * *
41443524 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCATGGTTTGCAAAATTTCTA
1 CAAAATTACCAAAATACCCCTGG-TTGTAAAACTACCAAAATACCCATGGTTTGCAAAATTACCA
41443589 AAATACCCCT-GTAGGG
65 AAATACCCCTGGT-GGG
* *
41443605 TAAAATTACCGAAATACCCCTG
1 CAAAATTACCAAAATACCCCTG
41443627 TAAGGTAGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
80 4 0.04
81 88 0.96
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (80 bp):
CAAAATTACCAAAATACCCCTGGTTGTAAAACTACCAAAATACCCATGGTTTGCAAAATTACCAA
AATACCCCTGGTGGG
Found at i:41446267 original size:40 final size:40
Alignment explanation
Indices: 41446102--41446287 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
41446092 TCGAATGATG
* * *
41446102 TCCGGGCTAATTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
41446142 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
41446182 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
41446222 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
41446263 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
41446288 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:41446294 original size:80 final size:79
Alignment explanation
Indices: 41446136--41446320 Score: 191
Period size: 80 Copynumber: 2.3 Consensus size: 79
41446126 GTGCTAAGTG
** *
41446136 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
**
41446201 GCATTTGTGCGAGTT
66 GCATTTGAACGAG-T
* * *
41446216 ACTAAATCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTAAATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
41446278 AAGGTATTTGAACGAGT
63 AAGGCATTTGAACGAGT
*
41446295 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTAAATCCGGGTTAAGA-TCCGAAGG
41446321 TATGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
79 17 0.19
80 70 0.79
81 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGT
Found at i:41451406 original size:45 final size:45
Alignment explanation
Indices: 41451308--41451445 Score: 163
Period size: 45 Copynumber: 3.1 Consensus size: 45
41451298 TCTAATTATA
* ** * * * *
41451308 ATGATGCCATTGTGTCTTTCAGTTATGGTCTTACTCACTTCT-GTC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTC-GTTTTAATC
41451353 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTTAATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTTAATC
* *
41451398 AT-ATTGCCATAGCATCTTTCATCTATGGTCTTACTTGTTTTAATC
1 ATGA-TGCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTTAATC
41451443 ATG
1 ATG
41451446 TTTATGATAA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
44 4 0.05
45 77 0.95
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.43
Consensus pattern (45 bp):
ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTTAATC
Found at i:41453351 original size:21 final size:22
Alignment explanation
Indices: 41453305--41453353 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
41453295 TGATTTAATT
*
41453305 TAATATATTCTTAATTATTTAA
1 TAATATATTCTTAATTATATAA
41453327 -AATATATT-TATAATT-TATAA
1 TAATATATTCT-TAATTATATAA
41453347 TAATATA
1 TAATATA
41453354 AAATAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATATATTCTTAATTATATAA
Found at i:41455450 original size:14 final size:14
Alignment explanation
Indices: 41455431--41455460 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
41455421 CCATGTCTGG
41455431 GACATGGCATTGGT
1 GACATGGCATTGGT
41455445 GACATGGCATTGGT
1 GACATGGCATTGGT
41455459 GA
1 GA
41455461 TGATATGCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.37, T:0.27
Consensus pattern (14 bp):
GACATGGCATTGGT
Found at i:41455480 original size:62 final size:62
Alignment explanation
Indices: 41455383--41455502 Score: 213
Period size: 62 Copynumber: 1.9 Consensus size: 62
41455373 CCATGTCTAG
*
41455383 GACATGGCATCGGTGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGT
1 GACATGGCATCGGTGATGATATGCGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGT
* *
41455445 GACATGGCATTGGTGATGATATGCGTGTCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GACATGGCATCGGTGATGATATGCGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
41455503 CTGCGATGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (62 bp):
GACATGGCATCGGTGATGATATGCGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGT
Found at i:41455528 original size:48 final size:47
Alignment explanation
Indices: 41455445--41455598 Score: 204
Period size: 48 Copynumber: 3.2 Consensus size: 47
41455435 TGGCATTGGT
*
41455445 GACATGGCAT-TGGTGATGATATGCGTGTCAGTGTAAGACCATGTCTGG
1 GACATGGCATCT-GTGATGATATGTGTGTCA-TGTAAGACCATGTCTGG
* *
41455493 GACATGGCATCTGCGATGATATGTGTGCCTATGTAAGACCATGTCTGG
1 GACATGGCATCTGTGATGATATGTGTGTC-ATGTAAGACCATGTCTGG
* *
41455541 GACATGGCATCGGTGATGATATGTGAAT-TCATGTAAGACCATGTCGGG
1 GACATGGCATCTGTGATGATATGTG--TGTCATGTAAGACCATGTCTGG
41455589 GACATGGCAT
1 GACATGGCAT
41455599 TGGTACTTTA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
48 91 0.96
49 3 0.03
50 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (47 bp):
GACATGGCATCTGTGATGATATGTGTGTCATGTAAGACCATGTCTGG
Found at i:41458709 original size:24 final size:24
Alignment explanation
Indices: 41458682--41458779 Score: 153
Period size: 24 Copynumber: 4.0 Consensus size: 24
41458672 AAAGGCTGTC
41458682 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
41458706 GGAG-AGAATTTAGGAGCTGATAAG
1 GGAGAAG-ATTTAGGAGCTGATAAG
* *
41458730 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
41458754 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
41458779 G
1 G
41458780 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.03
24 61 0.91
25 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:41459931 original size:31 final size:31
Alignment explanation
Indices: 41459896--41459956 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
41459886 AAATTGGAAT
*
41459896 AAAGGGCCAACGCGCCCAATTCGGTAAGAAA
1 AAAGGGCCAACACGCCCAATTCGGTAAGAAA
* *
41459927 AAAGGGCTAACACGCCCAATTTGGTAAGAA
1 AAAGGGCCAACACGCCCAATTCGGTAAGAA
41459957 CCCTCGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.13
Consensus pattern (31 bp):
AAAGGGCCAACACGCCCAATTCGGTAAGAAA
Found at i:41461963 original size:25 final size:25
Alignment explanation
Indices: 41461934--41461981 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
41461924 TTATAATATG
* *
41461934 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
41461959 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
41461982 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:41462084 original size:20 final size:20
Alignment explanation
Indices: 41462024--41462084 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
41462014 ATAAATATGG
*
41462024 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
* *
41462044 CATGTATGATATGAACATGA
1 TATGTATGATATGCACATGA
41462064 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
41462084 T
1 T
41462085 GTAATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:41462188 original size:23 final size:24
Alignment explanation
Indices: 41462134--41462238 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
41462124 GAGGAAGTGA
*
41462134 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
41462158 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
41462181 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
41462205 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41462229 AAAAGAGGCT
1 AAAAG-GGCT
41462239 AGGCCTCCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 22 0.29
24 49 0.65
25 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:41462203 original size:47 final size:48
Alignment explanation
Indices: 41462134--41462238 Score: 167
Period size: 47 Copynumber: 2.2 Consensus size: 48
41462124 GAGGAAGTGA
41462134 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
41462181 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
41462229 AAAAGAGGCT
1 AAAAG-GGCT
41462239 AGGCCTCCGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
47 43 0.81
48 6 0.11
49 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:41462479 original size:31 final size:31
Alignment explanation
Indices: 41462444--41462507 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
41462434 CGTTTACAGT
41462444 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
41462475 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
41462506 AA
1 AA
41462508 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:41465112 original size:29 final size:29
Alignment explanation
Indices: 41465080--41465214 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
41465070 ATACCCTCCG
** * *
41465080 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
41465109 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41465138 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
41465167 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41465196 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
41465215 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:41465147 original size:58 final size:58
Alignment explanation
Indices: 41465026--41465215 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
41465016 TACTCGATTT
* * * *** *
41465026 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
41465084 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
41465142 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
41465200 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
41465216 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:41472256 original size:29 final size:29
Alignment explanation
Indices: 41472224--41472358 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
41472214 ATACCCTCCG
** * *
41472224 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
41472253 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41472282 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
* *
41472311 AGCACGTACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41472340 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
41472359 GATCTCGTCA
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
29 90 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:41472291 original size:58 final size:58
Alignment explanation
Indices: 41472170--41472359 Score: 170
Period size: 58 Copynumber: 3.3 Consensus size: 58
41472160 TACTCGATTT
* * * *** *
41472170 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
41472228 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * * *
41472286 TGCACACTTAGTGCCTTATATTTCCAGCACGTACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
41472344 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
41472360 ATCTCGTCAC
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 93 0.89
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:41478831 original size:25 final size:25
Alignment explanation
Indices: 41478802--41478849 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
41478792 TTATAATATG
* * *
41478802 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
41478827 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
41478850 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:41478952 original size:20 final size:20
Alignment explanation
Indices: 41478892--41478952 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
41478882 ATAAATATGG
*
41478892 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
* *
41478912 CATGTATGATATGAACATGA
1 TATGTATGATATGCACATGA
41478932 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
41478952 T
1 T
41478953 GTAATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:41479052 original size:23 final size:24
Alignment explanation
Indices: 41478998--41479102 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
41478988 GATGAAGTGA
*
41478998 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
41479022 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
41479045 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
41479069 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
41479093 AAAAGAGGCT
1 AAAAG-GGCT
41479103 AGGCCTCCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 22 0.29
24 49 0.65
25 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:41479067 original size:47 final size:48
Alignment explanation
Indices: 41478998--41479102 Score: 167
Period size: 47 Copynumber: 2.2 Consensus size: 48
41478988 GATGAAGTGA
41478998 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
41479045 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
41479093 AAAAGAGGCT
1 AAAAG-GGCT
41479103 AGGCCTCCGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
47 43 0.81
48 6 0.11
49 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:41479346 original size:31 final size:31
Alignment explanation
Indices: 41479311--41479371 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
41479301 TTACAGTAAA
41479311 GGCTTCGGCCCAGTAATATGAAATATGAAAT
1 GGCTTCGGCCCAGTAATATGAAATATGAAAT
** *
41479342 GGCTTCGGCCCAGTGTTATGGAATATGAAA
1 GGCTTCGGCCCAGTAATATGAAATATGAAA
41479372 CATGAAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (31 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAT
Found at i:41480363 original size:33 final size:34
Alignment explanation
Indices: 41480286--41480366 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
41480276 TATGGGCCAT
*
41480286 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
41480320 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
41480353 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
41480367 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:41480371 original size:32 final size:31
Alignment explanation
Indices: 41480286--41480378 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
41480276 TATGGGCCAT
*
41480286 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
41480320 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
41480353 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
41480379 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
32 25 0.54
33 10 0.22
34 9 0.20
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:41489035 original size:40 final size:40
Alignment explanation
Indices: 41488901--41489102 Score: 183
Period size: 40 Copynumber: 5.0 Consensus size: 40
41488891 TAAATGCTTT
* * ** * *
41488901 CAGGGATACCAAAGTACAAACAGGAGCACGTATGTGTAAA
1 CAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAAA
* * * * *
41488941 TAGAGGTGCCGAAGTACAAGCAGGGGCACGTATGTGTAAA
1 CAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAAA
* *
41488981 TAGGGGTACCGAAGTACAAGTAGGAGCACGTATGTGCAAA
1 CAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAAA
* ** * *
41489021 CAGGTGTATTGAAGTACGAA-TAGGGGCACATATGTCCAAA
1 CAGGGGTACCGAAGTAC-AAGTAGGGGCACGTATGTGCAAA
* * *
41489061 CAGGGGTACCGAAGTATGAA-AAGGGGCACGTATGTACAAA
1 CAGGGGTACCGAAGTA-CAAGTAGGGGCACGTATGTGCAAA
41489101 CA
1 CA
41489103 TTCAATAATT
Statistics
Matches: 134, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (40 bp):
CAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAAA
Found at i:41495514 original size:29 final size:29
Alignment explanation
Indices: 41495475--41495553 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
41495465 CTTAATAATC
*
41495475 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
41495505 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
41495534 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
41495554 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:41496213 original size:2 final size:2
Alignment explanation
Indices: 41496195--41496232 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
41496185 TGATGGCCGA
* *
41496195 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41496233 CAACTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41501764 original size:19 final size:19
Alignment explanation
Indices: 41501742--41501806 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 19
41501732 AATTATAGAA
41501742 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
*
41501761 AAAATTCAAAAT-ATTTATA
1 AAAATTCAAAATAATTT-TT
41501780 AAAATTTCAAAATTTATATTTTT
1 AAAA-TTCAAAA--TA-ATTTTT
41501803 AAAA
1 AAAA
41501807 AATATATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 4 0.11
19 17 0.45
20 7 0.18
22 1 0.03
23 5 0.13
24 4 0.11
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:41501830 original size:11 final size:11
Alignment explanation
Indices: 41501816--41501849 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
41501806 AAATATATAT
41501816 AAAAATTCT-A
1 AAAAATTCTAA
41501826 AAAAATTCTAA
1 AAAAATTCTAA
41501837 AAAAATTCTAA
1 AAAAATTCTAA
41501848 AA
1 AA
41501850 TATATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:41501831 original size:10 final size:10
Alignment explanation
Indices: 41501802--41501862 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
41501792 TTTATATTTT
*
41501802 TAAAAAATATA
1 TAAAAAAT-TC
41501813 TATAAAAATTC
1 TA-AAAAATTC
41501824 TAAAAAATTC
1 TAAAAAATTC
41501834 TAAAAAAATTC
1 T-AAAAAATTC
* *
41501845 TAAAATA-TA
1 TAAAAAATTC
41501854 TAAAAAATT
1 TAAAAAATT
41501863 AAAATTTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 7 0.16
10 15 0.35
11 15 0.35
12 6 0.14
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:41501840 original size:21 final size:22
Alignment explanation
Indices: 41501802--41501860 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
41501792 TTTATATTTT
*
41501802 TAAAAAATATATATAAAAATTC
1 TAAAAAATATATAAAAAAATTC
*
41501824 TAAAAAAT-TCTAAAAAAATTC
1 TAAAAAATATATAAAAAAATTC
41501845 T--AAAATATATAAAAAA
1 TAAAAAATATATAAAAAA
41501861 TTAAAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 5 0.15
20 8 0.24
21 12 0.36
22 8 0.24
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAAAATATATAAAAAAATTC
Found at i:41502365 original size:42 final size:42
Alignment explanation
Indices: 41502306--41502390 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
41502296 TCGCAATGAG
41502306 ACATTTTGTTTGGTGAAGTAACAACGTCAACCCTGAATTTTC
1 ACATTTTGTTTGGTGAAGTAACAACGTCAACCCTGAATTTTC
41502348 ACATTTTGTTTGGTGAAGTAACAACGTCAACCCTGAATTTTC
1 ACATTTTGTTTGGTGAAGTAACAACGTCAACCCTGAATTTTC
41502390 A
1 A
41502391 AAACTTTGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (42 bp):
ACATTTTGTTTGGTGAAGTAACAACGTCAACCCTGAATTTTC
Found at i:41503671 original size:63 final size:63
Alignment explanation
Indices: 41503600--41503755 Score: 213
Period size: 63 Copynumber: 2.5 Consensus size: 63
41503590 TTTTAAGCAT
* * * * *
41503600 AAACAGTGAGTTACATGGCCTCGGCACACGCCCGTGTCCCTGGTCGTATGGTTTTTATACTAC
1 AAACAGTGAGTTACACGGCCTAGGCACACGCCCGTGCCCCTGGCCGTATGATTTTTATACTAC
* * ** *
41503663 AAACAGTGAGTTACACGGCCTGGGCACACACCTTTGCCCCTGGCCGTGTGATTTTTATACTAC
1 AAACAGTGAGTTACACGGCCTAGGCACACGCCCGTGCCCCTGGCCGTATGATTTTTATACTAC
*
41503726 AAACAGTGAGTTACACGACCTAGGCACACG
1 AAACAGTGAGTTACACGGCCTAGGCACACG
41503756 TTCGTGTGAA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 81 1.00
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (63 bp):
AAACAGTGAGTTACACGGCCTAGGCACACGCCCGTGCCCCTGGCCGTATGATTTTTATACTAC
Found at i:41504415 original size:27 final size:26
Alignment explanation
Indices: 41504385--41504439 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
41504375 GATTAATTGC
*
41504385 AAAAGAAGAAAGAAGAAAAAGAAATTA
1 AAAAGAAGAAAGAACAAAAA-AAATTA
* *
41504412 AAAAGAAGGAAGAACAACAAAAATTA
1 AAAAGAAGAAAGAACAAAAAAAATTA
41504438 AA
1 AA
41504440 GAATCAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.07
Consensus pattern (26 bp):
AAAAGAAGAAAGAACAAAAAAAATTA
Found at i:41504417 original size:24 final size:26
Alignment explanation
Indices: 41504390--41504439 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
41504380 ATTGCAAAAG
*
41504390 AAGAAAGAAGAA-AA-AGAAATTAAA
1 AAGAAAGAAGAACAACAAAAATTAAA
*
41504414 AAGAAGGAAGAACAACAAAAATTAAA
1 AAGAAAGAAGAACAACAAAAATTAAA
41504440 GAATCAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 11 0.50
25 2 0.09
26 9 0.41
ACGTcount: A:0.72, C:0.04, G:0.16, T:0.08
Consensus pattern (26 bp):
AAGAAAGAAGAACAACAAAAATTAAA
Found at i:41506133 original size:46 final size:46
Alignment explanation
Indices: 41505951--41506148 Score: 161
Period size: 46 Copynumber: 4.3 Consensus size: 46
41505941 ATTTGTTTGT
* * * * * *
41505951 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAAACATGTCTAGGACATGCATCGGCTACGA-GACGA
* * *
41505997 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAAACGA
1 GAGCCAGTGTAA-AACATGTCTAGGACAT-GCATCGGCTA-CGAGACGA
* * *
41506045 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCT-CGAGACGTA
1 GAGCCAGTGTAAAACATGTCTAGGACATGCATC-GGCTACGAGACG-A
* * *
41506092 -AGCCAGTGTAAAACATGTTTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAAACATGTCTAGGACATGCATCGGCTACGAGACGA
* *
41506137 TAGTCAGTGTAA
1 GAGCCAGTGTAA
41506149 GACCGTGTCT
Statistics
Matches: 123, Mismatches: 20, Indels: 18
0.76 0.12 0.11
Matches are distributed among these distances:
45 4 0.03
46 65 0.53
47 31 0.25
48 22 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAAACATGTCTAGGACATGCATCGGCTACGAGACGA
Found at i:41507915 original size:41 final size:41
Alignment explanation
Indices: 41507839--41507974 Score: 202
Period size: 41 Copynumber: 3.3 Consensus size: 41
41507829 AAATTGAGCA
* * *
41507839 AAAATGCCGCTAAA-AACAGAACATTAGCGGAGCTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
*
41507879 AAAATGCTGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
*
41507920 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
41507961 AAAACGCCACTAAA
1 AAAATGCCGCTAAA
41507975 AGTTATATAA
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 13 0.15
41 75 0.85
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
Done.