Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 16 of 444
Found at i:4666221 original size:14 final size:15
Alignment explanation
Indices: 4666202--4666234 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
4666192 TTTGTGTGTT
4666202 TTTTATTTTA-TTTA
1 TTTTATTTTATTTTA
4666216 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
4666231 TTTT
1 TTTT
4666235 TTCACAGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:4667194 original size:13 final size:13
Alignment explanation
Indices: 4667176--4667207 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
4667166 CACTTAACAT
*
4667176 GCCAAAAGTATAA
1 GCCAAAAGTACAA
4667189 GCCAAAAGTACAA
1 GCCAAAAGTACAA
4667202 GCCAAA
1 GCCAAA
4667208 TTAGTGGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.22, G:0.16, T:0.09
Consensus pattern (13 bp):
GCCAAAAGTACAA
Found at i:4667331 original size:18 final size:18
Alignment explanation
Indices: 4667308--4667353 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
4667298 CTAATGTATT
*
4667308 GTATTGATTAAG-CTCGAC
1 GTATTGACTAAGTCT-GAC
*
4667326 GTATTGACTAAGTCTGAT
1 GTATTGACTAAGTCTGAC
4667344 GTATTGACTA
1 GTATTGACTA
4667354 TGCCTAATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (18 bp):
GTATTGACTAAGTCTGAC
Found at i:4667346 original size:41 final size:42
Alignment explanation
Indices: 4667265--4667349 Score: 118
Period size: 41 Copynumber: 2.0 Consensus size: 42
4667255 CTAAGCCTAG
4667265 TGTAATGACTAAGCCCGACGTAATTGACTAAGCCTAATGTAT
1 TGTAATGACTAAGCCCGACGTAATTGACTAAGCCTAATGTAT
* * * * *
4667307 TGTATTGATTAAGCTCGACGT-ATTGACTAAGTCTGATGTAT
1 TGTAATGACTAAGCCCGACGTAATTGACTAAGCCTAATGTAT
4667348 TG
1 TG
4667350 ACTATGCCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
41 20 0.53
42 18 0.47
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
TGTAATGACTAAGCCCGACGTAATTGACTAAGCCTAATGTAT
Found at i:4668377 original size:14 final size:14
Alignment explanation
Indices: 4668358--4668392 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
4668348 TTTATGATTA
*
4668358 TTTTATTTTAATAT
1 TTTTATTTAAATAT
4668372 TTTTATTTAAATAT
1 TTTTATTTAAATAT
4668386 TATTTAT
1 T-TTTAT
4668393 AAAGATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTAAATAT
Found at i:4675749 original size:19 final size:19
Alignment explanation
Indices: 4675707--4675772 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
4675697 TTTTTATCCT
4675707 TATTA-TTTATATACTATAAG
1 TATTATTTTATATA-TAT-AG
4675727 -ATTATTTTATATATATAG
1 TATTATTTTATATATATAG
*
4675745 TATTATTCTTCATAT-TAT-C
1 TATTATT-TT-ATATATATAG
4675764 TATTATTTT
1 TATTATTTT
4675773 TCCAATTATT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 4 0.10
19 20 0.49
20 13 0.32
21 4 0.10
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (19 bp):
TATTATTTTATATATATAG
Found at i:4676127 original size:28 final size:28
Alignment explanation
Indices: 4676074--4676127 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
4676064 TCATTATAGA
* *
4676074 TATAAATTCTTTTACAAACTTTATATTC
1 TATAAATTATTTTACAAACTTAATATTC
*
4676102 TATACATTATTTTACTAAAC-TAATAT
1 TATAAATTATTTTAC-AAACTTAATAT
4676128 CTTTTGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (28 bp):
TATAAATTATTTTACAAACTTAATATTC
Found at i:4676721 original size:26 final size:26
Alignment explanation
Indices: 4676685--4676820 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
4676675 TGATACAAAT
4676685 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
4676711 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4676737 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4676763 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4676789 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
4676815 TGATAA
1 TGATAA
4676821 GAATTTCATG
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:4683202 original size:15 final size:15
Alignment explanation
Indices: 4683168--4683212 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
4683158 ATATTCTTTA
4683168 TGCAT-TCATGCATT
1 TGCATCTCATGCATT
4683182 TGCATCTCATGGCATT
1 TGCATCTCAT-GCATT
*
4683198 T-CATCACAT-CATT
1 TGCATCTCATGCATT
4683211 TG
1 TG
4683213 TATTCAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 11 0.41
16 6 0.22
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (15 bp):
TGCATCTCATGCATT
Found at i:4691345 original size:119 final size:118
Alignment explanation
Indices: 4691182--4691779 Score: 910
Period size: 119 Copynumber: 5.0 Consensus size: 118
4691172 TAGGCCGCAG
* * *
4691182 TATAGCAGATTTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAAC-TTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
*
4691247 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGATGTTCTCAAA
65 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
*
4691301 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAAC-TTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
*
4691366 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA
65 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
* * *
4691420 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAATAGATCCAATATAATTTGGTATTCTTGTG
1 TATAGCAGATCT-AACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
* * * *
4691485 TTTACAAGAAACAAATCGAGGACATAGCATATTTGACTCTCAGACGTCCTCAGA
65 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
*
4691539 TATAGCAGATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCT-AACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
* *
4691604 TTTACAAGGAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACA
65 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA-A-A
* * **
4691660 CAT-GCCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTG
1 TATAG-CAGATCTAA-CTTCAGATGTTTATACTGAA-ACAGATCCAAGATGATTTGGTATTCTTG
* *
4691724 TGTTTACAAGAAACAAATCGAAGACATAGTAGATTTGACTCTCAGATGTTCTCAAA
63 TGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
4691780 CAGACTCCAA
Statistics
Matches: 444, Mismatches: 29, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
119 332 0.75
120 6 0.01
121 31 0.07
122 75 0.17
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (118 bp):
TATAGCAGATCTAACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
Found at i:4691761 original size:46 final size:46
Alignment explanation
Indices: 4691709--4691846 Score: 120
Period size: 46 Copynumber: 3.2 Consensus size: 46
4691699 GATCCAAGAT
4691709 GATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTA
1 GATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTA
* * *
4691755 GATTTGAC--TCTCAGATGTTCT-C---AAACAGACTCCAAG----A-T-
1 GATTTGACATTCT-TG-TGTT-TACAAGAAACA-AATCGAAGACATAGTA
*
4691793 GATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTA
1 GATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTA
4691839 GATTTGAC
1 GATTTGAC
4691847 TCTCAGATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 32
0.64 0.06 0.30
Matches are distributed among these distances:
37 1 0.01
38 13 0.19
39 2 0.03
40 9 0.13
41 5 0.07
43 5 0.07
44 10 0.14
45 2 0.03
46 21 0.30
47 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (46 bp):
GATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTA
Found at i:4691842 original size:84 final size:84
Alignment explanation
Indices: 4691697--4691927 Score: 351
Period size: 84 Copynumber: 2.8 Consensus size: 84
4691687 ATACTGAAGC
4691697 CAGA-TCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTAGATTTG
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTAGATTTG
4691761 ACTCTCAGATGTTCTCAAA
66 ACTCTCAGATGTTCTCAAA
*
4691780 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTG
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTAGATTTG
4691845 ACTCTCAGATGTTCTCAAA
66 ACTCTCAGATGTTCTCAAA
* * * * * * * *
4691864 CAGACT-CTAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAATACATAGCT-GATTT
1 CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAG-TAGATTT
4691927 G
65 G
4691928 GCTTTCACGT
Statistics
Matches: 136, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
83 51 0.38
84 85 0.62
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (84 bp):
CAGACTCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGTAGATTTG
ACTCTCAGATGTTCTCAAA
Found at i:4693078 original size:8 final size:8
Alignment explanation
Indices: 4693065--4693089 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4693055 CCCTTAGGGC
4693065 GGCGCGTG
1 GGCGCGTG
4693073 GGCGCGTG
1 GGCGCGTG
4693081 GGCGCGTG
1 GGCGCGTG
4693089 G
1 G
4693090 ACCGGCGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.64, T:0.12
Consensus pattern (8 bp):
GGCGCGTG
Found at i:4694048 original size:28 final size:28
Alignment explanation
Indices: 4693995--4694048 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
4693985 TCATTATAGA
* *
4693995 TATAAATTCTTTTACAAACTTTATATTC
1 TATAAATTATTTTACAAACTTAATATTC
*
4694023 TATACATTATTTTACTAAAC-TAATAT
1 TATAAATTATTTTAC-AAACTTAATAT
4694049 CTTTTGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (28 bp):
TATAAATTATTTTACAAACTTAATATTC
Found at i:4700966 original size:29 final size:31
Alignment explanation
Indices: 4700934--4700997 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
4700924 GATATTTAAT
4700934 AATAAA-TT-TAA-AAT-ATAATATATAATAAA
1 AATAAATTTATAAGAATAATAAT-TAT-ATAAA
*
4700963 AATATATTTATAAGAATAATAATTATATAAA
1 AATAAATTTATAAGAATAATAATTATATAAA
4700994 AATA
1 AATA
4700998 TAAAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 5 0.17
30 2 0.07
31 12 0.40
32 6 0.20
33 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (31 bp):
AATAAATTTATAAGAATAATAATTATATAAA
Found at i:4700974 original size:17 final size:17
Alignment explanation
Indices: 4700943--4700999 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
4700933 TAATAAATTT
*
4700943 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
4700961 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
4700978 ATAATA-A-TTAT-ATA
1 AAAATATATTTATAATA
4700992 AAAATATA
1 AAAATATA
4701000 AAATATATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:4701508 original size:19 final size:19
Alignment explanation
Indices: 4701484--4701574 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
4701474 AATCATATCT
*
4701484 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
4701503 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
4701521 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
4701538 TCTAAGATTCCATATCACA
1 TCTAAGATTGCATATCATA
4701557 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
4701575 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.25
19 33 0.52
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:4701542 original size:35 final size:37
Alignment explanation
Indices: 4701484--4701574 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 37
4701474 AATCATATCT
* *
4701484 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTCCATATCACA
4701521 TCTAAGATTG-TATCATATCTAAGATTCCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTCCATATCACA
4701557 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
4701575 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
35 18 0.37
36 15 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTCCATATCACA
Found at i:4705449 original size:26 final size:26
Alignment explanation
Indices: 4705413--4705496 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
4705403 CATGAAATTC
4705413 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4705439 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4705465 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4705491 TTATCA
1 TTATCA
4705497 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4711949 original size:14 final size:14
Alignment explanation
Indices: 4711930--4711960 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
4711920 GGGTATAGTA
4711930 AAATATTAAAAAAT
1 AAATATTAAAAAAT
*
4711944 AAATATTTAAAAAT
1 AAATATTAAAAAAT
4711958 AAA
1 AAA
4711961 GAGAAACTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATATTAAAAAAT
Found at i:4712541 original size:19 final size:19
Alignment explanation
Indices: 4712519--4712569 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
4712509 AAAAAAATTT
*
4712519 TAAAATTTTAAAAAGTAAA
1 TAAAATATTAAAAAGTAAA
* *
4712538 TAAAAGCA-TAAAAAGTATA
1 TAAAA-TATTAAAAAGTAAA
4712557 -AAAATATTAAAAA
1 TAAAATATTAAAAA
4712570 TTTGTACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.38
19 15 0.58
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (19 bp):
TAAAATATTAAAAAGTAAA
Found at i:4712986 original size:21 final size:21
Alignment explanation
Indices: 4712956--4713020 Score: 75
Period size: 20 Copynumber: 3.2 Consensus size: 21
4712946 GATTGATGAG
4712956 AAAAAG-TAAATATAAATTAT
1 AAAAAGTTAAATATAAATTAT
4712976 AAAAAGTTAAATATAAATTA-
1 AAAAAGTTAAATATAAATTAT
**
4712996 AAAATTTTAAA-AGTAAA-TAT
1 AAAAAGTTAAATA-TAAATTAT
4713016 AAAAA
1 AAAAA
4713021 TATTTTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 3 0.08
20 23 0.59
21 13 0.33
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAAAGTTAAATATAAATTAT
Found at i:4713021 original size:21 final size:21
Alignment explanation
Indices: 4712962--4713021 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
4712952 TGAGAAAAAG
4712962 TAAATATAAATTATAAAAA-GT
1 TAAATATAAA-TATAAAAATGT
*
4712983 TAAATATAAAT-TAAAAATTT
1 TAAATATAAATATAAAAATGT
4713003 TAAA-AGTAAATATAAAAAT
1 TAAATA-TAAATATAAAAAT
4713022 ATTTTTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 7 0.20
20 11 0.31
21 17 0.49
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
TAAATATAAATATAAAAATGT
Found at i:4730536 original size:31 final size:31
Alignment explanation
Indices: 4730499--4730560 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
4730489 CTAAATTTAG
*
4730499 GGTTTCAAAATTTGAAACCCTAAATCACCTA
1 GGTTTCAAAATTTAAAACCCTAAATCACCTA
*
4730530 GGTTTCAAATTTTAAAACCCTAAATCACCTA
1 GGTTTCAAAATTTAAAACCCTAAATCACCTA
4730561 ACCCCACCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (31 bp):
GGTTTCAAAATTTAAAACCCTAAATCACCTA
Found at i:4731775 original size:22 final size:21
Alignment explanation
Indices: 4731750--4731828 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
4731740 GCATATAGTG
4731750 TATTATATATATAATTTTTATA
1 TATTATATATAT-ATTTTTATA
* *
4731772 TATTATATATATGTGTGTTTTAAA
1 TATTATATATA--TAT-TTTTATA
* *
4731796 TATTATGATATATATATATATA
1 TATTAT-ATATATATTTTTATA
4731818 TA-TATATATAT
1 TATTATATATAT
4731829 TTCAATATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 6 0.13
21 3 0.06
22 17 0.36
23 3 0.06
24 13 0.28
25 5 0.11
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TATTATATATATATTTTTATA
Found at i:4731808 original size:2 final size:2
Alignment explanation
Indices: 4731803--4731828 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4731793 AAATATTATG
4731803 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4731829 TTCAATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4741954 original size:21 final size:21
Alignment explanation
Indices: 4741928--4741986 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
4741918 ATGAGAAATG
4741928 TAAATATAAATTATAAAAAGT
1 TAAATATAAATTATAAAAAGT
**
4741949 TAAATATAAATTA-AAAATTT
1 TAAATATAAATTATAAAAAGT
4741969 TAAA-AGTAAA-TATAAAAA
1 TAAATA-TAAATTATAAAAA
4741987 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 3 0.09
20 17 0.52
21 13 0.39
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (21 bp):
TAAATATAAATTATAAAAAGT
Found at i:4741987 original size:21 final size:21
Alignment explanation
Indices: 4741923--4741987 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
4741913 CATTGATGAG
4741923 AAATG-TAAATATAAATTATAA
1 AAATGTTAAATATAAA-TATAA
4741944 AAA-GTTAAATATAAAT-TAA
1 AAATGTTAAATATAAATATAA
*
4741963 AAATTTTAAA-AGTAAATATAA
1 AAATGTTAAATA-TAAATATAA
4741984 AAAT
1 AAAT
4741988 ATTTTTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
19 7 0.18
20 12 0.31
21 20 0.51
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AAATGTTAAATATAAATATAA
Found at i:4749243 original size:132 final size:131
Alignment explanation
Indices: 4748948--4749293 Score: 338
Period size: 132 Copynumber: 2.6 Consensus size: 131
4748938 AGAATTCTTC
*
4748948 AAAACGAAGGCGATATTCGATTCTTGGCAATTCGTGGAATTGTGCCCTAATGTGTTGGGTTGCAA
1 AAAACGAAGGCGATATTCGATT-TTGGCAATTCG-GGAATTGTGCCCTAACGTGTTGGGTTGCAA
* * * * * * * **
4749013 TTTCTCGTTTGCT-AAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTCTTAAAAATTC
64 TTTCTCGTTTGCTCAAAAGTAATCAAAGATCCCTTCAAAATTCCACCCAGGTCTCTCAAAAACCC
*
4749077 TTT
129 TCT
** * * *
4749080 AAAGTGAAGACGAGATTTGATATTTGGCAATTCGCGGAATTGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGGCGATATTCGAT-TTTGGCAATTCG-GGAATTGTGCCCTAACGTGTTGGGTTGCAA
* * *
4749145 TTTCTCGTTTGCTCAAAA-TAATTAAATATCCCTTCAAAATTCCACTCAGGTCT-TCCAAAAACC
64 TTTCTCGTTTGCTCAAAAGTAATCAAAGATCCCTTCAAAATTCCACCCAGGTCTCT-CAAAAACC
4749208 CTCT
128 CTCT
* * * * * ** * * **
4749212 AAAACGAAGGCAATACTCGGTGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGAT
1 AAAACGAAGGCGATATTCGAT-TTTGGCAATTCGGGAATTGTGCCCTAACGTGTTGGGTTGCAAT
*
4749277 TTCTCGTTTGGTCAAAA
65 TTCTCGTTTGCTCAAAA
4749294 CAATCGAATA
Statistics
Matches: 173, Mismatches: 38, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
131 41 0.24
132 127 0.73
133 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (131 bp):
AAAACGAAGGCGATATTCGATTTTGGCAATTCGGGAATTGTGCCCTAACGTGTTGGGTTGCAATT
TCTCGTTTGCTCAAAAGTAATCAAAGATCCCTTCAAAATTCCACCCAGGTCTCTCAAAAACCCTC
T
Found at i:4749292 original size:131 final size:133
Alignment explanation
Indices: 4749122--4749428 Score: 330
Period size: 134 Copynumber: 2.3 Consensus size: 133
4749112 CGCGGAATTG
* * ** * *
4749122 TGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATTAAATATCCCTTCAAAATTC
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTC
* * **
4749187 CACTCA-GGTCTTCCAA-AAACCCTCTAAAACGAAGGCAATACTCGGTGTTTGACAATTCGAGAA
66 CACTCATGGTCTTCCAAGAAACACTCTAAAACAAAGGCAATACTCGGCATTTGACAATTCGAGAA
4749250 TCA
131 TCA
* * * * *** *
4749253 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGGTCAAAACAATCGAATATTCCTTTAGGTTTT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTC
* * ** * * * * * *
4749318 CACTCATGTTTTTTTAAGGAAATATTTTAGAACAAAGGCAATATTTGGCATTTGACAATTCGAGA
66 CACTCATGGTCTTCCAA-GAAACACTCTAAAACAAAGGCAATACTCGGCATTTGACAATTCGAGA
4749383 ATCA
130 ATCA
*
4749387 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAAC
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAAC
4749429 GATCGGACAT
Statistics
Matches: 143, Mismatches: 30, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
131 57 0.40
132 6 0.04
134 80 0.56
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (133 bp):
TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTC
CACTCATGGTCTTCCAAGAAACACTCTAAAACAAAGGCAATACTCGGCATTTGACAATTCGAGAA
TCA
Found at i:4756983 original size:30 final size:29
Alignment explanation
Indices: 4756947--4757121 Score: 215
Period size: 30 Copynumber: 5.8 Consensus size: 29
4756937 ACTTTTCTCA
4756947 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACA-CTTTTCCACCACCAACTCC
4756977 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACA-CTTTTCCACCACCAACTCC
*
4757007 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCAC-ACTTTTCCACCACCAACTCC
*
4757037 ACTAGCCACACTTTCTCCACCACCAAATCC
1 ACTAGCCACACTTT-TCCACCACCAACTCC
* * ** *
4757067 ATTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTT-TTCCACCACCAACTCC
* *
4757097 ACTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTT-TTCCACCACCA
4757122 CTTGTACCTA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
29 4 0.03
30 124 0.97
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (29 bp):
ACTAGCCACACTTTTCCACCACCAACTCC
Found at i:4757711 original size:25 final size:25
Alignment explanation
Indices: 4757623--4757741 Score: 82
Period size: 25 Copynumber: 4.7 Consensus size: 25
4757613 ATATTTCTTA
** *
4757623 ATATTATATTATATATATTCTTTTAAT
1 ATATTAT-TTATATATATT-TAATACT
* *
4757650 ATATTA--GATATAT-TTTAAATTCT
1 ATATTATTTATATATATTT-AATACT
* *
4757673 ATATTACGTATATATATATTTTATACT
1 ATATTA--TTTATATATATTTAATACT
* * *
4757700 ATTTTATTTATATATCTTTAATATT
1 ATATTATTTATATATATTTAATACT
4757725 ATATTATTTATATATAT
1 ATATTATTTATATATAT
4757742 ATATATTTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
22 1 0.01
23 10 0.14
24 6 0.08
25 30 0.42
27 21 0.30
28 3 0.04
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (25 bp):
ATATTATTTATATATATTTAATACT
Found at i:4757726 original size:16 final size:17
Alignment explanation
Indices: 4757685--4757749 Score: 68
Period size: 16 Copynumber: 4.1 Consensus size: 17
4757675 ATTACGTATA
*
4757685 TATATATTTTATACTATT
1 TATATATTATATA-TATT
*
4757703 T-TAT-TTATATATCTT
1 TATATATTATATATATT
4757718 TA-ATATTATAT-TATT
1 TATATATTATATATATT
4757733 TATATA-TATATATATT
1 TATATATTATATATATT
4757749 T
1 T
4757750 TTTTTCTACA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
15 16 0.40
16 20 0.50
17 3 0.08
18 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATATTATATATATT
Found at i:4757817 original size:25 final size:24
Alignment explanation
Indices: 4757767--4757831 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 24
4757757 ACATGTTATC
*
4757767 TTATGTATATA-TCTT-AACTATA
1 TTATGTATATATTTTTAAACTATA
4757789 TTATGTATATATTTTTAACACTATA
1 TTATGTATATATTTTTAA-ACTATA
*
4757814 TTATGTACATATTTTTAA
1 TTATGTATATATTTTTAA
4757832 TATTATCACG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 11 0.29
23 3 0.08
24 1 0.03
25 23 0.61
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (24 bp):
TTATGTATATATTTTTAAACTATA
Found at i:4758008 original size:16 final size:15
Alignment explanation
Indices: 4757984--4758031 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4757974 TAATTATTAT
*
4757984 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4758000 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4758015 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4758031 T
1 T
4758032 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4758019 original size:7 final size:8
Alignment explanation
Indices: 4757984--4758035 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4757974 TAATTATTAT
*
4757984 TATTCTAA
1 TATTTTAA
*
4757992 TATTTTGA
1 TATTTTAA
4758000 TATTTTAA
1 TATTTTAA
4758008 TATTTT-A
1 TATTTTAA
4758015 TATTTTATA
1 TATTTTA-A
*
4758024 TATTTTAT
1 TATTTTAA
4758032 TATT
1 TATT
4758036 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4763100 original size:44 final size:44
Alignment explanation
Indices: 4763037--4763123 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
4763027 AATCCTGCAG
4763037 ATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAGCAT
1 ATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAGCAT
* *
4763081 ATTTGGTGTCTCTGTATTGGTAGAGAGCAAATCAAAGATAGCA
1 ATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAGCA
4763124 GATCAAAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGATAGCAT
Found at i:4763128 original size:14 final size:14
Alignment explanation
Indices: 4763106--4763140 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
4763096 ATTGGTAGAG
*
4763106 AGCAAATCAAAGAT
1 AGCAGATCAAAGAT
4763120 AGCAGATCAAAGAT
1 AGCAGATCAAAGAT
4763134 AGCAGAT
1 AGCAGAT
4763141 TTGGCGTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (14 bp):
AGCAGATCAAAGAT
Found at i:4763137 original size:58 final size:58
Alignment explanation
Indices: 4763062--4763184 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 58
4763052 ATTGGCAGAG
* * * *
4763062 AGCAAATCAAAGATAGCATATTTGGTGTCTCTGTATTGGTAGAGAGCAAATCAAAGAT
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGAT
* * *
4763120 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGAT
1 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGAT
4763178 AGCAGAT
1 AGCAGAT
4763185 TTGGCGTCTC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (58 bp):
AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCAAAGAT
Found at i:4763184 original size:44 final size:44
Alignment explanation
Indices: 4763120--4763526 Score: 661
Period size: 44 Copynumber: 9.2 Consensus size: 44
4763110 AATCAAAGAT
*
4763120 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
*
4763164 GGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
* *
4763208 AGCAGATCGAAGATAGCAGATTTGGCGTTTCTGTATTGGCGGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
* * *
4763252 AGCAGATCGAAGATAGCAAATTTGACGTCTCTGTATTGGCGGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
*
4763296 AGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
*
4763340 AGCAGATCGAGGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
* * *
4763384 AGTAGATCGAAGATAGCAGATTTGGCATTTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
* *
4763428 AGAAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
* *
4763472 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAAAG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
*
4763516 AGCAAATCGAA
1 AGCAGATCGAA
4763527 AATGACGAAT
Statistics
Matches: 336, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 336 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (44 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAG
Found at i:4765471 original size:2 final size:2
Alignment explanation
Indices: 4765454--4765493 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
4765444 GCTTGTTTAA
* *
4765454 AT AT TT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4765494 CTATTACTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4765777 original size:2 final size:2
Alignment explanation
Indices: 4765765--4765797 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
4765755 TAAGTTTATT
*
4765765 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4765798 GGTTTGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:4766831 original size:132 final size:130
Alignment explanation
Indices: 4766536--4766897 Score: 359
Period size: 132 Copynumber: 2.7 Consensus size: 130
4766526 AGAATTCTTC
4766536 AAAACGAAGGCGATATTCGATTCTTGGCAATTCGTGGAATTGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGGCGATATTCGATT-TTGGCAATTCG-GGAATTGTGCCCTAACGTGTTGGGTTGCAA
** * * * * * **
4766601 TTTCTCGTTTGCT-AAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTCTTAAAAATTC
64 TTTCTCGTTTGCTCAAAA-TAATCGAATATCCCTTCAAAATTCCACCCAGGTCTCTCAAAAACCC
*
4766665 TTT
128 TCT
** * * **
4766668 AAAGTGAAGACGAGATTTTATATTTGGCAATTCGCGGAATTGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGGCGATATTCGAT-TTTGGCAATTCG-GGAATTGTGCCCTAACGTGTTGGGTTGCAA
* *
4766733 TTTCTCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTCCACTCAGGTCT-TCCAAAAACCC
64 TTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTCCACCCAGGTCTCT-CAAAAACCC
4766797 TCT
128 TCT
* * * * ** * * * **
4766800 AAAACGAAGGCAATACTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTAGGTTGTGAT
1 AAAACGAAGGCGATATTCGAT-TTTGGCAATTCGGGAATTGTGCCCTAACGTGTTGGGTTGCAAT
* * *
4766865 TTCTCGTTTGGTCAAAACAATCGAATATTCCTT
65 TTCTCGTTTGCTCAAAATAATCGAATATCCCTT
4766898 TAGGTTTTCA
Statistics
Matches: 186, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
131 54 0.29
132 127 0.68
133 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (130 bp):
AAAACGAAGGCGATATTCGATTTTGGCAATTCGGGAATTGTGCCCTAACGTGTTGGGTTGCAATT
TCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTCCACCCAGGTCTCTCAAAAACCCTCT
Found at i:4766880 original size:131 final size:134
Alignment explanation
Indices: 4766690--4767017 Score: 329
Period size: 135 Copynumber: 2.5 Consensus size: 134
4766680 AGATTTTATA
* ** * * ** *
4766690 TTTGGCAATTCGCGGAATTGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAAT
1 TTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAAT
* *
4766755 CAAATATCCCTTCAAAATTCCACTCA-G-GTCTTCCAA-AAACCCTCTAAAACGAAGGCAATACT
65 CAAATATCCCTTCAAAATTCCACTCATGTGTCTTCCAAGAAACACTCTAAAACAAAGGCAATACT
*
4766817 CGGTG
130 CGGCG
* *
4766822 TTTGACAATTCGGGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCGTTTGGTCAAAACAATC
1 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATC
* * * *** * * * ** * * * *
4766887 GAATATTCCTTTAGGTTTTCACTCATGTTTTTTTTAAGGAAACATTTTAGAACAAAGGCAATATT
66 AAATATCCCTTCAAAATTCCACTCATGTGTCTTCCAA-GAAACACTCTAAAACAAAGGCAATACT
*
4766952 TGGCG
130 CGGCG
* * *
4766957 TTTGAAAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAAC
1 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAAC
4767018 GATCGAACAT
Statistics
Matches: 158, Mismatches: 34, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
131 62 0.39
132 12 0.08
133 5 0.03
135 79 0.50
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (134 bp):
TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATC
AAATATCCCTTCAAAATTCCACTCATGTGTCTTCCAAGAAACACTCTAAAACAAAGGCAATACTC
GGCG
Found at i:4766982 original size:135 final size:135
Alignment explanation
Indices: 4766806--4767051 Score: 366
Period size: 135 Copynumber: 1.8 Consensus size: 135
4766796 CTCTAAAACG
* * *
4766806 AAGGCAATACTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCG
1 AAGGCAATACTCGGCGTTTGAAAATTCGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCG
* * * *
4766871 TTTGGTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTTTTTTAAGGAAACATTTTA
66 TTTGCTCAAAACAATCGAACATTCCTTTAGATTCTCACTCATGTTTTTTTTAAGGAAACATTTTA
4766936 GAACA
131 GAACA
* * *
4766941 AAGGCAATATTTGGCGTTTGAAAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCG
1 AAGGCAATACTCGGCGTTTGAAAATTCGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCG
* * * *
4767006 TTTGCTTAAAACGATCGAACATTGCTTTATATTCTCACTCATGTTT
66 TTTGCTCAAAACAATCGAACATTCCTTTAGATTCTCACTCATGTTT
4767052 ATAAAATATA
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
135 97 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (135 bp):
AAGGCAATACTCGGCGTTTGAAAATTCGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCG
TTTGCTCAAAACAATCGAACATTCCTTTAGATTCTCACTCATGTTTTTTTTAAGGAAACATTTTA
GAACA
Found at i:4771161 original size:20 final size:19
Alignment explanation
Indices: 4771115--4771158 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
4771105 TATTATTAAT
*
4771115 AAATTAAAATAAGTAAATG
1 AAATTAAAATAAGTAAAAG
4771134 AAATTAAAATAAAGTAAAAAG
1 AAATTAAAAT-AAGT-AAAAG
4771155 AAAT
1 AAAT
4771159 AAAGAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 4 0.18
21 8 0.36
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (19 bp):
AAATTAAAATAAGTAAAAG
Found at i:4772045 original size:22 final size:23
Alignment explanation
Indices: 4772003--4772046 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
4771993 TTTGAAGCAA
*
4772003 ATTGAGATTGAATTGCTATGATG
1 ATTGAGATTGAATTGCAATGATG
4772026 ATTGA-ATTGAATT-CGAATGAT
1 ATTGAGATTGAATTGC-AATGAT
4772047 TATGATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 13 0.68
23 5 0.26
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
ATTGAGATTGAATTGCAATGATG
Found at i:4782027 original size:21 final size:21
Alignment explanation
Indices: 4782002--4782041 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
4781992 GGTTGATGAG
4782002 AAAAAGTAAATATAAATTATA
1 AAAAAGTAAATATAAATTATA
4782023 AAAAAGTAAATATAAATTA
1 AAAAAGTAAATATAAATTA
4782042 AAATTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
AAAAAGTAAATATAAATTATA
Found at i:4783965 original size:26 final size:26
Alignment explanation
Indices: 4783929--4783980 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4783919 TAAATTTTCT
4783929 ACATAATTAATAAATAAATTTTATAC
1 ACATAATTAATAAATAAATTTTATAC
4783955 ACATAATTAATAAATAAATTTTATAC
1 ACATAATTAATAAATAAATTTTATAC
4783981 CAAATTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (26 bp):
ACATAATTAATAAATAAATTTTATAC
Found at i:4786839 original size:84 final size:84
Alignment explanation
Indices: 4786638--4786890 Score: 267
Period size: 84 Copynumber: 3.0 Consensus size: 84
4786628 ATGAGAAATA
* * * * *
4786638 AAATAAAATAAAATAAAATCTGTTTCAAGATTTATTCCCACTGTTTAATAAAGAGTTTTTT-ATA
1 AAATTAAATTAAATAAAATCTGTTTCAGGATTTATTCCCACTGTTTAA-CAAGATTTTTTTGATA
* * * *
4786702 TGATTTTCTTGCCAAAAACGAG
65 TTATTTTGTTTCCAAATAC--G
** * *
4786724 AAATTAAATTAAATAAAATCTGTTTTGGGATTTACTCCCACTGTTTAACAAGATTTTATTTGATT
1 AAATTAAATTAAATAAAATCTGTTTCAGGATTTATTCCCACTGTTTAACAAGATTTT-TTTGATA
*
4786789 TTATTTTGTTTCCAAATTC-
65 TTATTTTGTTTCCAAATACG
* ** * *
4786808 AAATTGAATTAAATAAAATCTGTTTCAGGATTTATTCCTGCCGTTTAACAAGATTTTCTTTGATG
1 AAATTAAATTAAATAAAATCTGTTTCAGGATTTATTCCCACTGTTTAACAAGATTTT-TTTGATA
*
4786873 TTGTTTTGTTTCCAAATA
65 TTATTTTGTTTCCAAATA
4786891 AAGATGTAAT
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
84 72 0.51
85 7 0.05
86 45 0.32
87 16 0.11
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (84 bp):
AAATTAAATTAAATAAAATCTGTTTCAGGATTTATTCCCACTGTTTAACAAGATTTTTTTGATAT
TATTTTGTTTCCAAATACG
Found at i:4786906 original size:84 final size:84
Alignment explanation
Indices: 4786724--4786950 Score: 255
Period size: 84 Copynumber: 2.7 Consensus size: 84
4786714 CAAAAACGAG
* * * ** *
4786724 AAATTAAATTAAATAAAATCTGTTTTGGGATTTACTCCCACTGTTTAACAAGATTTTATTTGATT
1 AAATTGAATCAAATAAAATCTGTTTTGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATG
*
4786789 TTATTTTGTTTCCAAATTC
66 TTATTTTGTTTCCAAATTA
* ** * *
4786808 AAATTGAATTAAATAAAATCTGTTTCAGGATTTATTCCTGCCGTTTAACAAGATTTTCTTTGATG
1 AAATTGAATCAAATAAAATCTGTTTTGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATG
*
4786873 TTGTTTTGTTTCCAAA-TA
66 TTATTTTGTTTCCAAATTA
* * * *
4786891 AAGA-TGTAATCAAAT-AATTTTGTTTTGGGATTTATTTCTGCTGTTTAAC-TGATTTTATTT
1 AA-ATTG-AATCAAATAAAATCTGTTTTGGGATTTATTCCTGCTGTTTAACAAGATTTTATTT
4786951 TTGATTTAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
82 9 0.07
83 33 0.27
84 79 0.65
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (84 bp):
AAATTGAATCAAATAAAATCTGTTTTGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATG
TTATTTTGTTTCCAAATTA
Found at i:4787810 original size:140 final size:141
Alignment explanation
Indices: 4787511--4787941 Score: 704
Period size: 140 Copynumber: 3.0 Consensus size: 141
4787501 ATGTGGCTAT
* *
4787511 GATTTCCAGAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTGATGGTCAATA-TTT
1 GATTTCCATAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTTATGGTCAATATTTT
*
4787575 TTTTCACAACTGAGTTATTCAACCATACTATGATTTTTTTTTTCTCAATGCTCGACAACTGACAT
66 TTTTCACAACTGAGTCATTCAACCATACTATGA--TTTTTTTTCTCAATGCTCGACAACTGACAT
4787640 CAATCAACATCAG
129 CAATCAACATCAG
*
4787653 GATTTCCATAGGCCTGCTTTAGTTAAATGCGTCTATTTGGGGTTGGTTTTTATGGTCAATATTTT
1 GATTTCCATAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTTATGGTCAATATTTT
* * *
4787718 TTTTCACAACTGAGTCACTCTACCATACTATGA-TTTTTTTCTCTATGCTCGACAACTGACATCA
66 TTTTCACAACTGAGTCATTCAACCATACTATGATTTTTTTTCTCAATGCTCGACAACTGACATCA
4787782 ATCAACATCAG
131 ATCAACATCAG
4787793 GATTTCCATAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTTATGGTCAATATTTT
1 GATTTCCATAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTTATGGTCAATA-TTT
* * *
4787858 TTTTGTCACAACTAAGTCATTCCACCATACTGTGATTTTTTTTTTCTCAATGCTCGACAACTGAC
65 TTTT-TCACAACTGAGTCATTCAACCATACTATGA--TTTTTTTTCTCAATGCTCGACAACTGAC
4787923 ATCAATCAACATCAG
127 ATCAATCAACATCAG
4787938 GATT
1 GATT
4787942 GAGAACGTAA
Statistics
Matches: 270, Mismatches: 13, Indels: 9
0.92 0.04 0.03
Matches are distributed among these distances:
140 101 0.37
141 7 0.03
142 84 0.31
143 33 0.12
145 45 0.17
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (141 bp):
GATTTCCATAGGCCTGCTTTAGTTAAAGGCGTCTATTTGGGGTTGGTTTTTATGGTCAATATTTT
TTTTCACAACTGAGTCATTCAACCATACTATGATTTTTTTTCTCAATGCTCGACAACTGACATCA
ATCAACATCAG
Found at i:4788655 original size:40 final size:40
Alignment explanation
Indices: 4788611--4788689 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
4788601 GAAAATATAA
4788611 TTTTCTATTTCCAAAGTCATTATTGATAGCTGATGGATAT
1 TTTTCTATTTCCAAAGTCATTATTGATAGCTGATGGATAT
4788651 TTTTCTATTTCCAAAGTCATTATTGATAGCTGATGGATA
1 TTTTCTATTTCCAAAGTCATTATTGATAGCTGATGGATA
4788690 ATCAGATTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (40 bp):
TTTTCTATTTCCAAAGTCATTATTGATAGCTGATGGATAT
Found at i:4789208 original size:26 final size:26
Alignment explanation
Indices: 4789171--4789305 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
4789161 TGATACAAAT
*
4789171 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4789197 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4789223 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
4789249 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
4789274 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
4789300 TGATAA
1 TGATAA
4789306 GAATATCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 24 0.23
26 79 0.77
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:4789286 original size:51 final size:52
Alignment explanation
Indices: 4789171--4789305 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
4789161 TGATACAAAT
4789171 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
4789223 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
4789274 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
4789306 GAATATCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 48 0.59
52 33 0.41
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:4792765 original size:22 final size:21
Alignment explanation
Indices: 4792739--4792780 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
4792729 ATTAAATATC
4792739 CAAGATTACAAGATCATATCTT
1 CAAGATTACAA-ATCATATCTT
*
4792761 CAAGATTGCAAATCATATCT
1 CAAGATTACAAATCATATCT
4792781 AAGATTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (21 bp):
CAAGATTACAAATCATATCTT
Found at i:4792786 original size:19 final size:20
Alignment explanation
Indices: 4792734--4792789 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
4792724 TACAAATTAA
* *
4792734 ATATCCAAGATTACAAGATC
1 ATATCTAAGATTGCAAGATC
4792754 ATATCTTCAAGATTGCAA-ATC
1 ATATC-T-AAGATTGCAAGATC
4792775 ATATCTAAGATTGCA
1 ATATCTAAGATTGCA
4792790 TATCCTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 9 0.28
20 6 0.19
21 8 0.25
22 9 0.28
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (20 bp):
ATATCTAAGATTGCAAGATC
Found at i:4795552 original size:3 final size:3
Alignment explanation
Indices: 4795526--4795637 Score: 70
Period size: 3 Copynumber: 37.3 Consensus size: 3
4795516 GACGAAAGTG
* * *
4795526 ATA AAA ATA ATA GTA ATA CA-A ATA ATA ATA ATA GTA A-A AT- ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
4795569 ATA ATA CTA AT- TTA ATA GTA GTA ATA ATA ATA ATA GAGTA ATGA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA AT-A ATA
* * *
4795616 ATG ATA ATA GTA ATA GTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
4795638 AGTAAGAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
2 6 0.07
3 69 0.83
4 6 0.07
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4796910 original size:12 final size:12
Alignment explanation
Indices: 4796893--4796929 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
4796883 GTAAACAAAG
*
4796893 AAGAAAAAAGTA
1 AAGAAAAAAGAA
4796905 AAG-AAAAAGAA
1 AAGAAAAAAGAA
4796916 AAGAAAAAAGAA
1 AAGAAAAAAGAA
4796928 AA
1 AA
4796930 AAAGGAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (12 bp):
AAGAAAAAAGAA
Found at i:4796916 original size:18 final size:19
Alignment explanation
Indices: 4796883--4796930 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
4796873 ATACATACAT
*
4796883 GTAAACAAAGAAGAAAA-AA
1 GTAAAGAAA-AAGAAAAGAA
4796902 GTAAAGAAAAAGAAAAGAA
1 GTAAAGAAAAAGAAAAGAA
*
4796921 -AAAAGAAAAA
1 GTAAAGAAAAA
4796931 AAGGAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (19 bp):
GTAAAGAAAAAGAAAAGAA
Found at i:4797996 original size:44 final size:43
Alignment explanation
Indices: 4797891--4798053 Score: 184
Period size: 43 Copynumber: 3.8 Consensus size: 43
4797881 TCCGTAAATC
* * *
4797891 TTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAA
* * **
4797934 TTCAACTTGTTACCCTACTGCTTAAGGGGTTAAAGCTTGTTATC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTG-TAAA
** * * *
4797978 TTTGACCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTGAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCT-TGTAAA
*
4798021 TTCAACCTGTTACCCTACTGCTTAGGGAGTTAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAA
4798054 GGTCTGCAAT
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
43 66 0.68
44 31 0.32
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (43 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAA
Found at i:4798078 original size:42 final size:43
Alignment explanation
Indices: 4797858--4798097 Score: 166
Period size: 43 Copynumber: 5.5 Consensus size: 43
4797848 CGATCCGTTT
* * * * *
4797858 CCCTACTGCTTAGGGTGATAAGATCCGTAAATCTTCAGCCTATTA
1 CCCTACTGCTTAGGGAGTTAAGATCTGTCAA--TTCAACCTATTA
* * * * *
4797903 CCCTACTGCTTAGGGGGTTAAG-GCTTGTAAATTCAACTTGTTA
1 CCCTACTGCTTAGGGAGTTAAGATC-TGTCAATTCAACCTATTA
* * * ** * *
4797946 CCCTACTGCTTAAGGG-GTTAA-AGCTTGTTATCTTTGACCTGTTT
1 CCCTACTGCTT-AGGGAGTTAAGATC-TGTCA-ATTCAACCTATTA
* * *
4797990 CCCTACTGCTTAGGGGGTTAAGATCTGTGAATTCAACCTGTTA
1 CCCTACTGCTTAGGGAGTTAAGATCTGTCAATTCAACCTATTA
* ***
4798033 CCCTACTGCTTAGGGAGTTAAGGTCTG-CAATTCGGTCTATTA
1 CCCTACTGCTTAGGGAGTTAAGATCTGTCAATTCAACCTATTA
4798075 CCCTACTGCTTAGGG-GTTTAAGA
1 CCCTACTGCTTAGGGAG-TTAAGA
4798098 CCCTTCGTCT
Statistics
Matches: 161, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.19
43 70 0.43
44 33 0.20
45 27 0.17
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (43 bp):
CCCTACTGCTTAGGGAGTTAAGATCTGTCAATTCAACCTATTA
Found at i:4798214 original size:44 final size:44
Alignment explanation
Indices: 4798164--4798316 Score: 150
Period size: 44 Copynumber: 3.5 Consensus size: 44
4798154 CAGCCTATTA
* **
4798164 CCCTACTGCTTAGGGGGTTAAGGCCCATTTTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGCTCATTAACTTTGATCTGTTT
* * * * * *
4798208 CCCTACTGCTTAGGGTGATAA-GATC-TGTAAATTT-AGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGGCTCAT-TAACTTTGA-TCTGTTT
* * * *
4798251 CCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGCTCATTAACTTTGATCTGTTT
4798295 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGGGTTAAG
4798317 ATTTAATTTG
Statistics
Matches: 84, Mismatches: 20, Indels: 10
0.74 0.18 0.09
Matches are distributed among these distances:
42 2 0.02
43 29 0.35
44 51 0.61
45 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGGCTCATTAACTTTGATCTGTTT
Found at i:4798254 original size:87 final size:85
Alignment explanation
Indices: 4797805--4798325 Score: 335
Period size: 87 Copynumber: 6.0 Consensus size: 85
4797795 TTTGATTTAC
* * * * *
4797805 AGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCCGTTTCCCTACTGCTTA
1 AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCC-TTATCTTCGATCTGTTTCCCTACTGCTTA
* * *
4797870 GGGTGATAAGATCCGTAAATCTT
65 GGGAGTTAAGATCTGT-AAT-TT
* ** * *
4797893 CAGCCTATTACCCTACTGCTTAGGGGGTTAAGG-CTTGTAAATTC-AACTTGTTACCCTACTGCT
1 -AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCCT-TATCTTCGATC-TGTTTCCCTACTGCT
* *
4797956 TAAGGG-GTTAA-AGCTTGTTATCTT
63 T-AGGGAGTTAAGATC-TGTAAT-TT
* * * ** * * * *
4797980 TGACCTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTGA-ATTCAACCTGTTACCCTACTGCT
1 AG-CCTATTACCCTACTGCTTAGGGGGTTAAGGCCCT-T-ATCTTCGATCTGTTTCCCTACTGCT
* * *
4798043 TAGGGAGTTAAGGTCTGCAATTC
63 TAGGGAGTTAAGATCTGTAATTT
* * * * * * *
4798066 GGTCTATTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTTGATCTG-CT-CC-ACTGCAAT
1 AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCCTT-ATCTTCGATCTGTTTCCCTACTGC---
* ** *
4798128 TTCAGGAAGGCAAGATCTGTGATTT
62 TT-AGGGAGTTAAGATCTGTAATTT
* *
4798153 CCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCCATTTTCTTTGATCTGTTTCCCTACTGCT
1 --AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCC-TTATCTTCGATCTGTTTCCCTACTGCT
* *
4798218 TAGGGTGATAAGATCTGTAAATTT
63 TAGGGAGTTAAGATCTGT-AATTT
* * * * *
4798242 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGCTTA
1 AGCCTATTACCCTACTGCTTAGGGGGTTAAGGC-CCTTATCTTCGATCTGTTTCCCTACTGCTTA
*
4798307 GGGGGTTAAGAT-T-TAATTT
65 GGGAGTTAAGATCTGTAATTT
4798326 GCTTCACTAC
Statistics
Matches: 340, Mismatches: 68, Indels: 53
0.74 0.15 0.11
Matches are distributed among these distances:
83 5 0.01
84 7 0.02
85 26 0.08
86 19 0.06
87 149 0.44
88 43 0.13
89 81 0.24
90 3 0.01
91 2 0.01
92 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (85 bp):
AGCCTATTACCCTACTGCTTAGGGGGTTAAGGCCCTTATCTTCGATCTGTTTCCCTACTGCTTAG
GGAGTTAAGATCTGTAATTT
Found at i:4805700 original size:137 final size:137
Alignment explanation
Indices: 4805278--4805696 Score: 786
Period size: 137 Copynumber: 3.1 Consensus size: 137
4805268 CATTGGGCCT
* * *
4805278 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
4805343 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4805407 CATATGC
131 CATATGC
4805414 AAGCCCATTCGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4805479 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4805544 CATATGC
131 CATATGC
*
4805551 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4805616 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4805681 CATATGC
131 CATATGC
4805688 AAGCCCATT
1 AAGCCCATT
4805697 TGGGGAGACT
Statistics
Matches: 277, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 123 0.44
137 154 0.56
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (137 bp):
AAGCCCATTCGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:4807511 original size:24 final size:25
Alignment explanation
Indices: 4807484--4807614 Score: 178
Period size: 24 Copynumber: 5.2 Consensus size: 25
4807474 CATGAAATTC
4807484 TTATCATGAAACA-TTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
4807508 TTATCATG-AACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
*
4807532 TTATCATGGAACA-TTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
*
4807557 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
* *
4807583 TTATCATGGAACATTTACCTAGCCTA
1 TTATCATGAAACATTTACCTAACC-A
4807609 TTATCA
1 TTATCA
4807615 ATTTGTACCA
Statistics
Matches: 96, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
23 4 0.04
24 37 0.39
25 18 0.19
26 35 0.36
27 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:4807585 original size:26 final size:26
Alignment explanation
Indices: 4807484--4807614 Score: 173
Period size: 26 Copynumber: 5.2 Consensus size: 26
4807474 CATGAAATTC
4807484 TTATCATGAAACA-TTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
4807508 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4807532 TTATCATGGAACA-TTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
4807557 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
4807583 TTATCATGGAACATTTACCTAGCCTA
1 TTATCATGAAACATTTACCTAACCCA
4807609 TTATCA
1 TTATCA
4807615 ATTTGTACCA
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
23 4 0.04
24 35 0.37
25 17 0.18
26 39 0.41
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4811662 original size:137 final size:137
Alignment explanation
Indices: 4811307--4811729 Score: 785
Period size: 137 Copynumber: 3.1 Consensus size: 137
4811297 CATTGGGCCT
** * *
4811307 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
4811372 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4811436 CATATGC
131 CATATGC
4811443 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4811508 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4811573 CATATGC
131 CATATGC
4811580 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
4811645 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4811710 CATATGC
131 CATATGC
4811717 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4811730 GAGACTACTC
Statistics
Matches: 280, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 122 0.44
137 158 0.56
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:4813551 original size:26 final size:26
Alignment explanation
Indices: 4813513--4813648 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
4813503 CATGAAATTC
* *
4813513 TTATCATGAAACATTAACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
4813539 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
4813565 TTATCATGGAACACTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* * *
4813591 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
*
4813617 TTATCATGGAACATTTACCTAGCCTA
1 TTATCATGGAACATTTACCTAACCTA
4813643 TTATCA
1 TTATCA
4813649 ATTTGTATCA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:4819732 original size:3 final size:3
Alignment explanation
Indices: 4819706--4819817 Score: 70
Period size: 3 Copynumber: 37.3 Consensus size: 3
4819696 GACGAAAGTG
* * *
4819706 ATA AAA ATA ATA GTA ATA CA-A ATA ATA ATA ATA GTA A-A AT- ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
4819749 ATA ATA CTA AT- TTA ATA GTA GTA ATA ATA ATA ATA GAGTA ATGA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA AT-A ATA
* * *
4819796 ATG ATA ATA GTA ATA GTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
4819818 AGTAAGAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
2 6 0.07
3 69 0.83
4 6 0.07
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4820207 original size:3 final size:3
Alignment explanation
Indices: 4820193--4820236 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
4820183 AAGTATAAAT
* *
4820193 ATA ATG ATA ATA ATA AAA GATGA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA
4820237 CAAATACTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
3 31 0.89
4 3 0.09
5 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:4821111 original size:11 final size:11
Alignment explanation
Indices: 4821095--4821126 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
4821085 ACAAAGAAGA
*
4821095 AAAAAGTAAAG
1 AAAAAGAAAAG
4821106 AAAAAGAAAAG
1 AAAAAGAAAAG
4821117 AAAAAGAAAA
1 AAAAAGAAAA
4821127 AAGGAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:4823493 original size:20 final size:20
Alignment explanation
Indices: 4823468--4823578 Score: 73
Period size: 20 Copynumber: 5.2 Consensus size: 20
4823458 TTAAACGTTT
4823468 AAATATTTTATATTATTAAA
1 AAATATTTTATATTATTAAA
* *
4823488 AAATATATTTAATATTTAAAATATTA
1 AAATAT-TTT-ATA-TT--ATTA-AA
4823514 AAATATTTTATATTATTAAA
1 AAATATTTTATATTATTAAA
* * *
4823534 AATATATTTAAAATT-TAAAA
1 AA-ATATTTTATATTATTAAA
* *
4823554 ATAATATTTAAAATT-TTAAA
1 A-AATATTTTATATTATTAAA
4823574 AAATA
1 AAATA
4823579 ATTTCAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
19 4 0.05
20 31 0.41
21 17 0.23
22 3 0.04
23 4 0.05
24 3 0.04
25 6 0.08
26 7 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATTTTATATTATTAAA
Found at i:4823564 original size:13 final size:13
Alignment explanation
Indices: 4823546--4823601 Score: 50
Period size: 12 Copynumber: 4.6 Consensus size: 13
4823536 TATATTTAAA
4823546 ATTTAAAAATAAT
1 ATTTAAAAATAAT
4823559 ATTT-AAAAT--T
1 ATTTAAAAATAAT
*
4823569 -TTAAAAAATAAT
1 ATTTAAAAATAAT
*
4823581 -TTCAAAAATATAT
1 ATTTAAAAATA-AT
4823594 ATTTAAAA
1 ATTTAAAA
4823602 TTTTAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
9 2 0.06
10 6 0.17
12 15 0.43
13 6 0.17
14 6 0.17
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTTAAAAATAAT
Found at i:4823589 original size:22 final size:19
Alignment explanation
Indices: 4823501--4823587 Score: 72
Period size: 20 Copynumber: 4.4 Consensus size: 19
4823491 TATATTTAAT
*
4823501 ATTTAAAATATT-AAAAT-
1 ATTTAAAATTTTAAAAATA
* *
4823518 ATTTTATATTATTAAAAATA
1 ATTTAAAATT-TTAAAAATA
4823538 TATTTAAAA-TTTAAAAATAA
1 -ATTTAAAATTTTAAAAAT-A
4823558 TATTTAAAATTTTAAAAAATA
1 -ATTTAAAATTTT-AAAAATA
4823579 ATTTCAAAA
1 ATTT-AAAA
4823588 ATATATATTT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
17 7 0.12
18 2 0.04
19 13 0.23
20 15 0.26
21 14 0.25
22 6 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTTAAAATTTTAAAAATA
Found at i:4823598 original size:35 final size:33
Alignment explanation
Indices: 4823545--4823611 Score: 116
Period size: 35 Copynumber: 2.0 Consensus size: 33
4823535 ATATATTTAA
4823545 AATTTAAAAATAATATTTAAAATTTTAAAAAAT
1 AATTTAAAAATAATATTTAAAATTTTAAAAAAT
4823578 AATTTCAAAAATATATATTTAAAATTTTAAAAAA
1 AATTT-AAAAATA-ATATTTAAAATTTTAAAAAA
4823612 ATATATTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 5 0.16
34 7 0.22
35 20 0.62
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
AATTTAAAAATAATATTTAAAATTTTAAAAAAT
Found at i:4823603 original size:22 final size:24
Alignment explanation
Indices: 4823578--4823633 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 24
4823568 TTTAAAAAAT
*
4823578 AATTTCAAAAATATATATT-TA-A
1 AATTTCAAAAAAATATATTATAGA
*
4823600 AATTTTAAAAAAATATATTATAGA
1 AATTTCAAAAAAATATATTATAGA
4823624 ACATTTCAAA
1 A-ATTTCAAA
4823634 TATACATTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.61
23 2 0.07
24 2 0.07
25 7 0.25
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (24 bp):
AATTTCAAAAAAATATATTATAGA
Found at i:4823754 original size:19 final size:19
Alignment explanation
Indices: 4823732--4823798 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 19
4823722 TCCTTATATT
4823732 TAAATAAAATAAATAAGGA
1 TAAATAAAATAAATAAGGA
* **
4823751 TAAAGACAAATTTTAAAATTAATAA
1 TAAATA-AAA---T-AAA-TAAGGA
4823776 TAAATAAAATAAATAAGGA
1 TAAATAAAATAAATAAGGA
4823795 TAAA
1 TAAA
4823799 AAAGTAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 13 0.36
20 6 0.17
21 1 0.03
23 1 0.03
24 6 0.17
25 9 0.25
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.25
Consensus pattern (19 bp):
TAAATAAAATAAATAAGGA
Found at i:4841633 original size:17 final size:18
Alignment explanation
Indices: 4841600--4841635 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
4841590 CAAAGAGGGA
4841600 AACATTGTCACCACTTTC
1 AACATTGTCACCACTTTC
*
4841618 AACATT-TCACCTCTTTC
1 AACATTGTCACCACTTTC
4841635 A
1 A
4841636 TTAAAGTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (18 bp):
AACATTGTCACCACTTTC
Found at i:4843349 original size:27 final size:24
Alignment explanation
Indices: 4843318--4843380 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
4843308 TGTAAGTTGT
4843318 ATAAAATATATTAAAATTAGATTTA
1 ATAAAATATATTAAAATTAGA-TTA
* *
4843343 TATTAAAATA-ATATAAATTTTGATTA
1 -A-TAAAATATAT-TAAAATTAGATTA
4843369 ATAAAATATATT
1 ATAAAATATATT
4843381 TTAATAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 8 0.25
25 3 0.09
26 6 0.19
27 15 0.47
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (24 bp):
ATAAAATATATTAAAATTAGATTA
Found at i:4844966 original size:28 final size:30
Alignment explanation
Indices: 4844900--4844967 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 30
4844890 TTTTTTCATT
4844900 TTGGTACCTAAACATTTATTTCTTATTACAAG
1 TTGGTACCTAAAC--TTATTTCTTATTACAAG
* * *
4844932 -TGATACCTAAAC-TATTT-TTTTTCCAAG
1 TTGGTACCTAAACTTATTTCTTATTACAAG
4844959 TTGGTACCT
1 TTGGTACCT
4844968 TTGTTAGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 8 0.26
28 12 0.39
31 11 0.35
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (30 bp):
TTGGTACCTAAACTTATTTCTTATTACAAG
Found at i:4845351 original size:20 final size:20
Alignment explanation
Indices: 4845326--4845363 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
4845316 ATTCTGATCC
4845326 GGTTCTAATTGATAATATCT
1 GGTTCTAATTGATAATATCT
4845346 GGTTCTAATTGATAATAT
1 GGTTCTAATTGATAATAT
4845364 AACTTTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (20 bp):
GGTTCTAATTGATAATATCT
Found at i:4846717 original size:25 final size:25
Alignment explanation
Indices: 4846689--4846843 Score: 122
Period size: 25 Copynumber: 6.1 Consensus size: 25
4846679 AAGTATATAC
*
4846689 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAT
*
4846714 ATAG-AGTTAAAAATACATACATAAT
1 ATAGTA-TTAAAAATATATACATAAT
* *
4846739 ATAGTTATTAAAATATACATAAAGATAAT
1 ATAG-TATTAAAA-AT--ATATACATAAT
** *
4846768 AT-GTAAGAAAAA-ATATAAATAAT
1 ATAGTATTAAAAATATATACATAAT
*
4846791 ATAGTATTAAAGATATATACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
4846816 ATA-TA-AAAAATCATATATACATGAT
1 ATAGTATTAAAA--ATATATACATAAT
4846841 ATA
1 ATA
4846844 TATATATATA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
23 14 0.13
24 10 0.10
25 53 0.51
26 7 0.07
27 9 0.09
28 1 0.01
29 10 0.10
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAT
Found at i:4846920 original size:2 final size:2
Alignment explanation
Indices: 4846913--4846937 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4846903 ATAAATATGC
4846913 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4846938 ATGGTATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4846953 original size:25 final size:24
Alignment explanation
Indices: 4846925--4847053 Score: 78
Period size: 23 Copynumber: 5.5 Consensus size: 24
4846915 ATATATATAT
* * *
4846925 ATATATATATATAATGGTATTAGA
1 ATATATACATATAATAGTATTAAA
4846949 A-ATATACA-ATATATAGTATTAGAA
1 ATATATACATATA-ATAGTATTA-AA
* *
4846973 ATATTTACATA-AGATAGTATAAAAA
1 ATATATACATATA-ATAGTAT-TAAA
*
4846998 ATATATA-A-CTAAT-GATATTAAA
1 ATATATACATATAATAG-TATTAAA
4847020 ATATATACATCATAATA-TA-TAAA
1 ATATATACAT-ATAATAGTATTAAA
*
4847043 AAATATA-ATAT
1 ATATATACATAT
4847054 TTAAAAAATA
Statistics
Matches: 83, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 30 0.36
24 7 0.08
25 26 0.31
26 2 0.02
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATACATATAATAGTATTAAA
Found at i:4847037 original size:22 final size:23
Alignment explanation
Indices: 4846990--4847050 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
4846980 CATAAGATAG
* *
4846990 TATAAAAAATATATAACTAATGA
1 TATATAAAATATATAACTAATAA
*
4847013 TAT-TAAAATATAT-ACATCATAA
1 TATATAAAATATATAAC-TAATAA
*
4847035 TATATAAAAAATATAA
1 TATATAAAATATATAA
4847051 TATTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 2 0.06
22 16 0.52
23 12 0.39
24 1 0.03
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (23 bp):
TATATAAAATATATAACTAATAA
Found at i:4847050 original size:16 final size:16
Alignment explanation
Indices: 4847031--4847064 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
4847021 TATATACATC
4847031 ATAATATATAAAAAAT
1 ATAATATATAAAAAAT
*
4847047 ATAATATTTAAAAAAT
1 ATAATATATAAAAAAT
4847063 AT
1 AT
4847065 GTACATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAATATATAAAAAAT
Found at i:4847082 original size:24 final size:24
Alignment explanation
Indices: 4847047--4847131 Score: 77
Period size: 24 Copynumber: 3.5 Consensus size: 24
4847037 TATAAAAAAT
*
4847047 ATAATAT-T-TAAAAAATATGTAC
1 ATAATATATATAAAAAATATATAC
*
4847069 ATAACATATATAAATATATATATATAC
1 ATAATATATATAAA-A-A-ATATATAC
* *
4847096 ATAATATAGTAT-TAAAATATTTAC
1 ATAATATA-TATAAAAAATATATAC
4847120 ATAATATATATA
1 ATAATATATATA
4847132 CATATTAGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
22 6 0.12
23 4 0.08
24 19 0.37
25 2 0.04
26 2 0.04
27 15 0.29
28 3 0.06
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAATATATATAAAAAATATATAC
Found at i:4847128 original size:13 final size:13
Alignment explanation
Indices: 4847020--4847135 Score: 69
Period size: 14 Copynumber: 8.8 Consensus size: 13
4847010 TGATATTAAA
*
4847020 ATATATACATCAT
1 ATATATACATAAT
* *
4847033 AATATATAAAAAAT
1 -ATATATACATAAT
** * *
4847047 ATAATATTTAAAAA
1 AT-ATATACATAAT
* *
4847061 ATATGTACATAAC
1 ATATATACATAAT
*
4847074 ATATATAAATATAT
1 ATATATACATA-AT
4847088 ATATATACATAAT
1 ATATATACATAAT
4847101 ATAGTATTA-A-AAT
1 ATA-TA-TACATAAT
4847114 AT-T-TACATAAT
1 ATATATACATAAT
4847125 ATATATACATA
1 ATATATACATA
4847136 TTAGAAGAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
9 2 0.03
10 1 0.01
11 6 0.08
12 1 0.01
13 33 0.42
14 34 0.43
15 2 0.03
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:4847209 original size:23 final size:23
Alignment explanation
Indices: 4847169--4847231 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
4847159 ATAATACTAC
*
4847169 ATAAATATATACAT-ATATTAAAA
1 ATAAATACATA-ATAATATTAAAA
4847192 ATAAATACATAATAATATTAAAA
1 ATAAATACATAATAATATTAAAA
* **
4847215 GTATGTACATAA-AATAT
1 ATAAATACATAATAATAT
4847232 ATACATATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.20
23 28 0.80
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (23 bp):
ATAAATACATAATAATATTAAAA
Found at i:4847312 original size:14 final size:14
Alignment explanation
Indices: 4847289--4847318 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4847279 ATATATACAT
*
4847289 AATATGGTATTAAA
1 AATATAGTATTAAA
4847303 AATATAGTATTAAA
1 AATATAGTATTAAA
4847317 AA
1 AA
4847319 CATGATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (14 bp):
AATATAGTATTAAA
Found at i:4847406 original size:22 final size:20
Alignment explanation
Indices: 4847381--4847441 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 20
4847371 AATATTACAT
4847381 AAATATATACATATATATGTAA
1 AAATA-ATACATATATAT-TAA
*
4847403 AAATAAATATATAATAATATTAA
1 AAAT-AATACAT-AT-ATATTAA
4847426 AAATAATAC-TATATAT
1 AAATAATACATATATAT
4847442 AAAGAGTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.12
20 2 0.06
21 1 0.03
22 13 0.38
23 10 0.29
24 4 0.12
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (20 bp):
AAATAATACATATATATTAA
Found at i:4847430 original size:23 final size:23
Alignment explanation
Indices: 4847338--4847440 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 23
4847328 TACATCTAAG
*
4847338 AAATA-ATAATAATGTTAAAAA-
1 AAATATATAATAATATTAAAAAT
* *
4847359 ACAAT-TGTTAATAATATT--ACAT
1 A-AATAT-ATAATAATATTAAAAAT
4847381 AAATATATACATATATATGTAAAAAT
1 AAATATATA-ATA-ATAT-TAAAAAT
4847407 AAATATATAATAATATTAAAAAT
1 AAATATATAATAATATTAAAAAT
4847430 AATACTATATA
1 AA-A-TATATA
4847441 TAAAGAGTGT
Statistics
Matches: 65, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
21 8 0.12
22 8 0.12
23 22 0.34
24 6 0.09
25 9 0.14
26 12 0.18
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (23 bp):
AAATATATAATAATATTAAAAAT
Found at i:4847494 original size:3 final size:3
Alignment explanation
Indices: 4847486--4847542 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
4847476 ATATACGATG
* * * * *
4847486 ATA ATA ATA ATG TTA ATA ATA ATA TTA ATA GTA GTA A-A TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
4847531 ATA ATA ATA ATA
1 ATA ATA ATA ATA
4847543 TATCAAAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 1 0.02
3 42 0.95
4 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:4850530 original size:25 final size:27
Alignment explanation
Indices: 4850493--4850546 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
4850483 TCAAACATGC
4850493 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
4850519 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
4850545 AT
1 AT
4850547 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:4852070 original size:26 final size:26
Alignment explanation
Indices: 4852032--4852089 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
4852022 CATGAAATTC
4852032 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4852058 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4852084 TTATCA
1 TTATCA
4852090 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4853368 original size:156 final size:155
Alignment explanation
Indices: 4853042--4853363 Score: 390
Period size: 156 Copynumber: 2.1 Consensus size: 155
4853032 AAATAAAGCA
* * **
4853042 TTAGCGGCGTTTATAA-AAGAACGCCGCAATG-GCTGACACATTAGCGGCGGTTGTCAAAAAAAC
1 TTAGCGGCGTTT-TAACAAAAACGCCGCAA-GAGGTGATGCATTAGCGGCGGTTGTCAAAAAAAC
* * *
4853105 GCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTTTGTGAGCTCTTTTGAGGCATTAGCGGCGT
64 GCCGCAAAAGTATTGAGCAAAACGGTGCCGTATGTATGTGAGC-CTATTGAGGCATTAGCGGCGT
*
4853170 TTTACAAAAACGCCGCTATAACTTCAAGC
128 TTTACAAAAACGCCGCTAAAACTTCAA-C
* *
4853199 TTTAGCGGCGTTTTAACAAAAACGCCGCAAGAGGTGATGCATTAGCGGCGGTT-TC-TACAAACG
1 -TTAGCGGCGTTTTAACAAAAACGCCGCAAGAGGTGATGCATTAGCGGCGGTTGTCAAAAAAACG
* *
4853262 TCGCAAAAGTATTGAGCAAAACGGTGCCGTGTGTATGTGAG-CTATTGAGGCATTAGCGGCGTTT
65 CCGCAAAAGTATTGAGCAAAACGGTGCCGTATGTATGTGAGCCTATTGAGGCATTAGCGGCG-TT
* *
4853326 CTTA-TAAAACGCCG-TAAAAAGTTCAA-
129 -TTACAAAAACGCCGCT-AAAACTTCAAC
4853352 TTAGCGGCGTTT
1 TTAGCGGCGTTT
4853364 GTTTTTAAAA
Statistics
Matches: 145, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
152 12 0.08
154 20 0.14
155 19 0.13
156 46 0.32
157 6 0.04
158 42 0.29
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (155 bp):
TTAGCGGCGTTTTAACAAAAACGCCGCAAGAGGTGATGCATTAGCGGCGGTTGTCAAAAAAACGC
CGCAAAAGTATTGAGCAAAACGGTGCCGTATGTATGTGAGCCTATTGAGGCATTAGCGGCGTTTT
ACAAAAACGCCGCTAAAACTTCAAC
Found at i:4854756 original size:9 final size:10
Alignment explanation
Indices: 4854731--4854755 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4854721 TTTGCTAAGT
4854731 CATTTTCCCC
1 CATTTTCCCC
4854741 CATTTTCCCC
1 CATTTTCCCC
4854751 CATTT
1 CATTT
4854756 CGTCCTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (10 bp):
CATTTTCCCC
Found at i:4858012 original size:14 final size:13
Alignment explanation
Indices: 4857989--4858018 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
4857979 ATTACTATAA
4857989 TAATTATATGAAG
1 TAATTATATGAAG
4858002 TAATATATATGAAG
1 TAAT-TATATGAAG
4858016 TAA
1 TAA
4858019 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:4858396 original size:183 final size:183
Alignment explanation
Indices: 4858088--4858639 Score: 1041
Period size: 183 Copynumber: 3.0 Consensus size: 183
4858078 GGATATAGTT
* * * *
4858088 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCTTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
4858153 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTTGAATTAATATTTGGTACTGATATAGATAAA
66 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
4858218 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
4858271 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
4858336 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
4858401 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
4858454 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
4858519 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
4858584 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
4858637 CAT
1 CAT
4858640 CTGTTCTAGG
Statistics
Matches: 362, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 362 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:4859623 original size:276 final size:276
Alignment explanation
Indices: 4859130--4860085 Score: 1867
Period size: 276 Copynumber: 3.5 Consensus size: 276
4859120 CCAACCTTAT
*
4859130 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
4859195 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
4859260 AAAGACTTGAAAGAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
*
4859325 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTAATATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
4859390 AGTTGATTTGTTACTA
261 AGTTGATTTGTTACTA
4859406 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
4859471 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
4859536 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
4859601 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
4859666 AGTTGATTTGTTACTA
261 AGTTGATTTGTTACTA
4859682 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
4859747 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
4859812 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
4859877 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
*
4859942 TAGTTGATTTGTTACTG
260 TAGTTGATTTGTTACTA
4859959 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
4860024 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
4860086 TGTATGTTTC
Statistics
Matches: 675, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
276 486 0.72
277 189 0.28
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (276 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTAATGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
AGTTGATTTGTTACTA
Found at i:4860204 original size:24 final size:24
Alignment explanation
Indices: 4860177--4860244 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 24
4860167 ATTATTATTG
4860177 AAATA-TACTCGTCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
4860201 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
*
4860225 AAATATTATCGTCCATTTTA
1 AAATATTATCGTCCGTTTTA
4860245 CCGTTTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 34 0.85
25 4 0.10
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:4860578 original size:9 final size:9
Alignment explanation
Indices: 4860566--4860668 Score: 100
Period size: 9 Copynumber: 11.6 Consensus size: 9
4860556 TATTTGATAT
*
4860566 CATAATTTA
1 CATAACTTA
4860575 CATAACTTA
1 CATAACTTA
* *
4860584 TATAACATA
1 CATAACTTA
* *
4860593 TATAACATA
1 CATAACTTA
4860602 CATAACTTA
1 CATAACTTA
* *
4860611 TATAACATA
1 CATAACTTA
4860620 CATAACTTA
1 CATAACTTA
*
4860629 TATAACTTA
1 CATAACTTA
* *
4860638 GATAA-ATA
1 CATAACTTA
*
4860646 TATAACTTA
1 CATAACTTA
4860655 CATAACTTA
1 CATAACTTA
4860664 CATAA
1 CATAA
4860669 TACTTAAATA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
8 6 0.08
9 72 0.92
ACGTcount: A:0.50, C:0.15, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:4860588 original size:18 final size:18
Alignment explanation
Indices: 4860566--4860668 Score: 118
Period size: 18 Copynumber: 5.8 Consensus size: 18
4860556 TATTTGATAT
* *
4860566 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* * *
4860584 TATAACATATATAACATA
1 CATAACTTATATAACTTA
*
4860602 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
4860620 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
4860638 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
4860655 CATAACTTACATAA
1 CATAACTTATATAA
4860669 TACTTAAATA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
17 15 0.21
18 56 0.79
ACGTcount: A:0.50, C:0.15, G:0.01, T:0.35
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:4860597 original size:27 final size:27
Alignment explanation
Indices: 4860562--4860668 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
4860552 AATATATTTG
*
4860562 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACTTATATAAC
*
4860590 ATATATAACATACATAACTTATATAAC
1 ATATATAACTTACATAACTTATATAAC
* * *
4860617 ATACATAACTTATATAACTTAGATAA-
1 ATATATAACTTACATAACTTATATAAC
*
4860643 ATATATAACTTACATAACTTACATAA
1 ATATATAACTTACATAACTTATATAA
4860669 TACTTAAATA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
26 23 0.33
27 43 0.61
28 4 0.06
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.36
Consensus pattern (27 bp):
ATATATAACTTACATAACTTATATAAC
Found at i:4866344 original size:21 final size:21
Alignment explanation
Indices: 4866311--4866361 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
4866301 ACAACTTAGA
*
4866311 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
4866332 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
4866353 GCAGAGGCA
1 GCAGAGGCA
4866362 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:4866662 original size:31 final size:31
Alignment explanation
Indices: 4866616--4866682 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
4866606 TGGTTGTATT
* *
4866616 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
4866647 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
4866678 TTTTA
1 TTTTA
4866683 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:4867131 original size:43 final size:43
Alignment explanation
Indices: 4866756--4867124 Score: 568
Period size: 43 Copynumber: 8.7 Consensus size: 43
4866746 GTAAAAAAAG
* *
4866756 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
4866799 CGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
4866843 CGCCGCTAAAAGCCTTGACCTTT-GCGGCGCTTTTTCCAAAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
4866885 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGC---TCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
4866925 CGCCGCTAAAAGCCTTGACCTTTAGCGGC-CTTCTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
4866967 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTCTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
4867010 CGCCGCTAAAAGCCTTGACCTTTAGTGGCACTTCTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * * *
4867053 CGTCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTTCCAAAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
4867096 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
4867125 TTTTTTTTCC
Statistics
Matches: 305, Mismatches: 15, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
39 1 0.00
40 36 0.12
42 78 0.26
43 148 0.49
44 42 0.14
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:4868422 original size:64 final size:64
Alignment explanation
Indices: 4868349--4868559 Score: 144
Period size: 64 Copynumber: 3.2 Consensus size: 64
4868339 CTGGGCCAGA
*
4868349 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
4868413 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTTGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
*
4868475 ACTAGG-CCAGA-
54 A-T-GGCCCATAG
*
4868486 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
4868550 GCCCATTTCA
1 GCCCATTTCA
4868560 AAATACATGC
Statistics
Matches: 103, Mismatches: 25, Indels: 38
0.62 0.15 0.23
Matches are distributed among these distances:
62 2 0.02
63 7 0.07
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 7 0.07
75 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:4868561 original size:137 final size:137
Alignment explanation
Indices: 4868315--4868601 Score: 522
Period size: 137 Copynumber: 2.1 Consensus size: 137
4868305 TATTGGGCCT
** *
4868315 AAGCCCATTCAGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
4868380 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
4868445 CATATGC
131 CATATGC
4868452 AAGCCCATTTGGGTAACAGTTG-TACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAACAG-TGATACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
4868516 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
65 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
4868581 ACATATGC
130 ACATATGC
4868589 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4868602 GAGACTACTT
Statistics
Matches: 145, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
137 143 0.99
138 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:4868886 original size:25 final size:27
Alignment explanation
Indices: 4868849--4868901 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
4868839 TCAAACATGC
4868849 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
4868875 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
4868901 A
1 A
4868902 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:4870416 original size:26 final size:26
Alignment explanation
Indices: 4870380--4870489 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
4870370 CATGAAATTC
4870380 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4870406 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4870432 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
4870458 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4870484 TTATCA
1 TTATCA
4870490 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4871293 original size:11 final size:11
Alignment explanation
Indices: 4871261--4871291 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
4871251 GACCCACCCT
4871261 TATTAATTTTA
1 TATTAATTTTA
4871272 TATTAATTTTA
1 TATTAATTTTA
4871283 TA-TAATTTT
1 TATTAATTTT
4871292 TAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTAATTTTA
Found at i:4871449 original size:30 final size:30
Alignment explanation
Indices: 4871415--4871477 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
4871405 ACTTAACAAG
4871415 CAAATACCTCTAAAATAATAACAAAACTAA
1 CAAATACCTCTAAAATAATAACAAAACTAA
** * *
4871445 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAACTAA
4871475 CAA
1 CAA
4871478 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAACTAA
Found at i:4879993 original size:40 final size:40
Alignment explanation
Indices: 4879948--4880031 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
4879938 AAAAATTATA
* * *
4879948 AAAAACGGAGCAATAGCGGCGTTTTACCA-AAAACGCCGCT
1 AAAAACAGAGCAATAGCGGCGCTTT-CAATAAAACGCCGCT
*
4879988 AAAAACAGAGCATTAGCGGCGCTTTCAATAAAACGCCGCT
1 AAAAACAGAGCAATAGCGGCGCTTTCAATAAAACGCCGCT
4880028 AAAA
1 AAAA
4880032 GTCATATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.05
40 37 0.95
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.15
Consensus pattern (40 bp):
AAAAACAGAGCAATAGCGGCGCTTTCAATAAAACGCCGCT
Found at i:4880275 original size:41 final size:40
Alignment explanation
Indices: 4880221--4880307 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
4880211 ATATAATCAT
*
4880221 TTTTATTATATTTTCAATTTGTCTATTGTTTTAATAATTG
1 TTTTAATATATTTTCAATTTGTCTATTGTTTTAATAATTG
** * * *
4880261 TTTTAATATCATTTTTTATTTGTTTTTTGTTTTAATATTTG
1 TTTTAATAT-ATTTTCAATTTGTCTATTGTTTTAATAATTG
4880302 TTTTAA
1 TTTTAA
4880308 ATGTATTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (40 bp):
TTTTAATATATTTTCAATTTGTCTATTGTTTTAATAATTG
Found at i:4880527 original size:7 final size:7
Alignment explanation
Indices: 4880517--4880541 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4880507 AGATTTAAGT
4880517 GTTAGGG
1 GTTAGGG
4880524 GTTAGGG
1 GTTAGGG
4880531 GTTAGGG
1 GTTAGGG
4880538 GTTA
1 GTTA
4880542 AAGGTGAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
GTTAGGG
Found at i:4880724 original size:7 final size:7
Alignment explanation
Indices: 4880712--4880737 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
4880702 TATCATTATA
4880712 GTTTAGG
1 GTTTAGG
4880719 GTTTAGG
1 GTTTAGG
4880726 GTTTAGG
1 GTTTAGG
4880733 GTTTA
1 GTTTA
4880738 AAGTGTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:4880781 original size:22 final size:22
Alignment explanation
Indices: 4880756--4880798 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
4880746 GAGTTATTAT
*
4880756 TTTAAGGTTTATAGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
4880778 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
4880799 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:4881397 original size:7 final size:7
Alignment explanation
Indices: 4881387--4881434 Score: 96
Period size: 7 Copynumber: 6.9 Consensus size: 7
4881377 AAAATCTTCA
4881387 AAAAAAT
1 AAAAAAT
4881394 AAAAAAT
1 AAAAAAT
4881401 AAAAAAT
1 AAAAAAT
4881408 AAAAAAT
1 AAAAAAT
4881415 AAAAAAT
1 AAAAAAT
4881422 AAAAAAT
1 AAAAAAT
4881429 AAAAAA
1 AAAAAA
4881435 CTTAAAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Done.