Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 162 of 444
Found at i:44610090 original size:28 final size:28
Alignment explanation
Indices: 44610047--44610120 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
44610037 ATACTGTAAG
*
44610047 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
*
44610075 GGGCTAAGGCCTAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
44610103 GGGCTAAGGCCCA-ATTAA
1 GGGCTAAGGCCCAGATTAA
44610121 CACTGATTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
27 5 0.12
28 38 0.88
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:44612468 original size:17 final size:17
Alignment explanation
Indices: 44612446--44612580 Score: 63
Period size: 17 Copynumber: 7.4 Consensus size: 17
44612436 ATTGAATCAC
44612446 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
44612463 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
44612483 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
* * *
44612500 TACATAAGTCTATGAATCAC
1 TACATAA-T-TA-AAAACAT
*
44612520 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
44612537 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
44612557 TACATAATTAAAAACGT
1 TACATAATTAAAAACAT
44612574 TACATAA
1 TACATAA
44612581 GTCTTGAAAT
Statistics
Matches: 82, Mismatches: 27, Indels: 18
0.65 0.21 0.14
Matches are distributed among these distances:
17 41 0.50
18 3 0.04
19 3 0.04
20 35 0.43
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:44612488 original size:20 final size:20
Alignment explanation
Indices: 44612438--44612563 Score: 90
Period size: 17 Copynumber: 6.8 Consensus size: 20
44612428 TTACTCGAAT
44612438 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
* * * *
44612456 -AAAACATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
44612475 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** *
44612493 AAAAT-ATTACATAAGTCTA
1 TGAATCACTACATAAGTCTA
44612512 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** * *
44612530 AAAAT-ATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
44612549 TGAATCACTACATAA
1 TGAATCACTACATAA
44612564 TTAAAAACGT
Statistics
Matches: 78, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
17 27 0.35
18 12 0.15
19 12 0.15
20 27 0.35
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.33
Consensus pattern (20 bp):
TGAATCACTACATAAGTCTA
Found at i:44612599 original size:74 final size:74
Alignment explanation
Indices: 44612438--44612602 Score: 253
Period size: 74 Copynumber: 2.2 Consensus size: 74
44612428 TTACTCGAAT
* *
44612438 TGAATCACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAATATTAC
1 TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
44612503 ATAAGTCTA
66 ATAAGTCTA
* * *
44612512 TGAATCACTACATAATTAAAAATATTACATAAGTCTTTGAATCACTACATAATTAAAAACGTTAC
1 TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
44612577 ATAAGTCT-
66 ATAAGTCTA
44612585 TGAAATTAAC-ACATAATT
1 TG-AA-TAACTACATAATT
44612603 GAAATGTAAG
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
73 2 0.02
74 80 0.94
75 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.33
Consensus pattern (74 bp):
TGAATAACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATTAC
ATAAGTCTA
Found at i:44612602 original size:37 final size:37
Alignment explanation
Indices: 44612437--44612585 Score: 262
Period size: 37 Copynumber: 4.0 Consensus size: 37
44612427 ATTACTCGAA
44612437 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
44612474 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
44612511 ATGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
44612548 TTGAATCACTACATAATTAAAAACGTTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
44612585 T
1 T
44612586 GAAATTAACA
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.34
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:44616898 original size:29 final size:29
Alignment explanation
Indices: 44616864--44617024 Score: 216
Period size: 29 Copynumber: 5.6 Consensus size: 29
44616854 TACTCGATTT
** * *
44616864 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
44616893 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
44616922 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
44616951 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
44616980 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
44617009 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
44617025 ATCTCGTCAC
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
28 2 0.02
29 116 0.98
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:44618251 original size:19 final size:18
Alignment explanation
Indices: 44618215--44618285 Score: 58
Period size: 19 Copynumber: 3.9 Consensus size: 18
44618205 AGAATGAACA
*
44618215 CTTTTTTTT-TTC-TTTT
1 CTTTTTTTTCTTCATATT
44618231 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCATATT
*
44618250 CTCTTTTTTTTTTCAT-TT
1 CT-TTTTTTTCTTCATATT
*
44618268 CTTTATTCTTTCTACATA
1 CTTT-TT-TTTCTTCATA
44618286 ATCCACTAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
16 4 0.09
17 7 0.16
18 9 0.20
19 22 0.50
20 2 0.05
ACGTcount: A:0.10, C:0.17, G:0.01, T:0.72
Consensus pattern (18 bp):
CTTTTTTTTCTTCATATT
Found at i:44618254 original size:21 final size:18
Alignment explanation
Indices: 44618215--44618269 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
44618205 AGAATGAACA
44618215 CTTTTTTTTTTC-TTT-T
1 CTTTTTTTTTTCATTTCT
44618231 CTTTGTTTTTCTTCATATTCT
1 CTTT-TTTTT-TTCAT-TTCT
44618252 CTTTTTTTTTTCATTTCT
1 CTTTTTTTTTTCATTTCT
44618270 TTATTCTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
CTTTTTTTTTTCATTTCT
Found at i:44626470 original size:46 final size:45
Alignment explanation
Indices: 44626326--44626499 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
44626316 ACTTGTGTGT
* * *
44626326 GCTAGTGTAAGACATGTCTGGAACATGAATCGGCCACATTATGA-G-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTAAGACGAA
* * * * * *
44626372 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGGCGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTAAGACGA-A
*
44626420 GCTAGTGTAAGACATATCTGGGACATGCATCGGCCTTAAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACG-AA
44626466 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
44626500 TACGAAATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.03
46 58 0.55
47 28 0.27
48 16 0.15
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACGAA
Found at i:44626737 original size:23 final size:22
Alignment explanation
Indices: 44626711--44626759 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
44626701 GGGTTGTTTT
* *
44626711 AATACAACATTTTGGTTTACTAA
1 AATA-AACATTTTGGTCTACGAA
**
44626734 AATAATGATTTTGGTCTACGAA
1 AATAAACATTTTGGTCTACGAA
44626756 AATA
1 AATA
44626760 TGAAAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (22 bp):
AATAAACATTTTGGTCTACGAA
Found at i:44627710 original size:14 final size:14
Alignment explanation
Indices: 44627693--44627740 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
44627683 AAAGAAAAGA
44627693 AAAAAAATAATCAC
1 AAAAAAATAATCAC
** *
44627707 AAAAGTATGAAATCAA
1 AAAAAAAT--AATCAC
44627723 AAAAAAATAATCAC
1 AAAAAAATAATCAC
44627737 AAAA
1 AAAA
44627741 GTATGAAATC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 15 0.58
16 11 0.42
ACGTcount: A:0.71, C:0.10, G:0.04, T:0.15
Consensus pattern (14 bp):
AAAAAAATAATCAC
Found at i:44627726 original size:16 final size:16
Alignment explanation
Indices: 44627701--44627754 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
44627691 GAAAAAAAAT
*
44627701 AATCACAAAAGTATGA
1 AATCAAAAAAGTATGA
**
44627717 AATCAAAAAAAAAT--
1 AATCAAAAAAGTATGA
*
44627731 AATCACAAAAGTATGA
1 AATCAAAAAAGTATGA
44627747 AATCAAAA
1 AATCAAAA
44627755 TAATATGTAG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
14 11 0.38
16 18 0.62
ACGTcount: A:0.65, C:0.11, G:0.07, T:0.17
Consensus pattern (16 bp):
AATCAAAAAAGTATGA
Found at i:44627728 original size:30 final size:30
Alignment explanation
Indices: 44627692--44627754 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
44627682 AAAAGAAAAG
44627692 AAAAAAAATAATCACAAAAGTATGAAATCA
1 AAAAAAAATAATCACAAAAGTATGAAATCA
44627722 AAAAAAAATAATCACAAAAGTATGAAATCA
1 AAAAAAAATAATCACAAAAGTATGAAATCA
44627752 AAA
1 AAA
44627755 TAATATGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.68, C:0.10, G:0.06, T:0.16
Consensus pattern (30 bp):
AAAAAAAATAATCACAAAAGTATGAAATCA
Found at i:44628143 original size:39 final size:39
Alignment explanation
Indices: 44628100--44628178 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
44628090 AAAAAAACTG
*
44628100 ATCCCACTCCCCCATGCTACTTTGTTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
*
44628139 ATCCCACTCCCCTATGCCACTTTGTTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
44628178 A
1 A
44628179 AACCATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.28, G:0.05, T:0.43
Consensus pattern (39 bp):
ATCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTA
Found at i:44628216 original size:17 final size:16
Alignment explanation
Indices: 44628194--44628225 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
44628184 TATTTTATTT
44628194 CTTTTTTATAAAAAAAC
1 CTTTTTT-TAAAAAAAC
44628211 CTTTTTTTAAAAAAA
1 CTTTTTTTAAAAAAA
44628226 AAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (16 bp):
CTTTTTTTAAAAAAAC
Found at i:44629910 original size:137 final size:137
Alignment explanation
Indices: 44629596--44630598 Score: 1738
Period size: 137 Copynumber: 7.3 Consensus size: 137
44629586 GGGATAGGGT
* * * *
44629596 TTGTTTCGATCTTCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTAT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
* * * * *
44629661 TCCAATGCAACTTCAGGGAGATAAGATCTGCTATC-TTAGTCTGCTCCACTGCAACTTTAGGAAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
**
44629725 ACAAGAC
131 TTAAGAC
* *
44629732 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTATGATTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
* * * *
44629797 TCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTTAGTCTGTTCCACTGCAACTTCAGAGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
44629862 TTAAGAC
131 TTAAGAC
44629869 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
44629934 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
44629999 TTAAGAC
131 TTAAGAC
* * *
44630006 TTGTGTTGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTATGATTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
* * *
44630071 TCCACTGCAACTTCAGGAAAATAAGATTTGCTATCTTTAGTCTGTTCCACTGCAACTTCAGAGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
44630136 TTAAGAC
131 TTAAGAC
44630143 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
44630208 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
44630273 TTAAGAC
131 TTAAGAC
* *
44630280 TTGTGTTGATCTACTCTACTACAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
44630345 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
*
44630410 ATAAGAC
131 TTAAGAC
*
44630417 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTATGGTTTATAGCTTCAATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
*
44630482 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTTTGCTCCACTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
*
44630547 ATAAGAC
131 TTAAGAC
44630554 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGT
1 TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGT
44630599 AATTTTCAGA
Statistics
Matches: 825, Mismatches: 41, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
136 91 0.11
137 734 0.89
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (137 bp):
TTGTGTCGATCTACTCTACTGCAACTTCAGAGAGATGAGATCTGTGGTTTATAGCTTCAATCTGT
TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
TTAAGAC
Found at i:44630452 original size:41 final size:42
Alignment explanation
Indices: 44630345--44630589 Score: 152
Period size: 45 Copynumber: 5.5 Consensus size: 42
44630335 TTCAATCTGT
* * * ** *
44630345 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-T-TGTCGA-TCTAC
44630390 TCCACTGCAACTTCAGGGAGATAAGACTTG-TGTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTTGTCGATCTAC
* * * * **
44630431 TCTACTGCAACTTCAGAGAGATGAGATCTATGGTTTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA-CT-T-G--T-T-G--TCGATCTAC
* * * ** * *
44630482 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-T-TGTCGA-TCTAC
44630527 TCCACTGCAACTTCAGGGAGATAAGACTTG-TGTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTTGTCGATCTAC
* *
44630568 TCTACTGCAACTTCAGAGAGAT
1 TCCACTGCAACTTCAGGGAGAT
44630590 GAGATCTGTA
Statistics
Matches: 157, Mismatches: 32, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
41 50 0.32
42 8 0.05
43 1 0.01
44 3 0.02
45 59 0.38
47 3 0.02
48 2 0.01
49 2 0.01
50 1 0.01
51 28 0.18
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTTGTCGATCTAC
Found at i:44635410 original size:17 final size:18
Alignment explanation
Indices: 44635388--44635428 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
44635378 TCAAACGCGC
*
44635388 TCTTCTCTT-TTCTTATT
1 TCTTCTCTTACTCTTATT
*
44635405 TCTTCTCTTACTCTTTTT
1 TCTTCTCTTACTCTTATT
44635423 TCTTCT
1 TCTTCT
44635429 ATCTCGCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (18 bp):
TCTTCTCTTACTCTTATT
Found at i:44635433 original size:22 final size:22
Alignment explanation
Indices: 44635387--44635433 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
44635377 TTCAAACGCG
*
44635387 CTCTTCTCTTTTCTTATTTCTT
1 CTCTTCTCTTTTCTTACTTCTT
44635409 CTCTTACTCTTTT-TT-CTTCTAT
1 CTCTT-CTCTTTTCTTACTTCT-T
44635431 CTC
1 CTC
44635434 GCATCTGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 11 0.50
23 7 0.32
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (22 bp):
CTCTTCTCTTTTCTTACTTCTT
Found at i:44643109 original size:39 final size:39
Alignment explanation
Indices: 44643066--44643143 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
44643056 AAAAAGTTTT
*
44643066 TCCCACTCCCCCATGCTACTTTGTTTTATTATTAATTAA
1 TCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTAA
44643105 TCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTAA
1 TCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTAA
44643144 AATCATATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.29, G:0.05, T:0.42
Consensus pattern (39 bp):
TCCCACTCCCCCATGCCACTTTGTTTTATTATTAATTAA
Found at i:44644177 original size:15 final size:15
Alignment explanation
Indices: 44644159--44644196 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
44644149 TTTGGCTTTT
44644159 GCAGGTGTAAGTGGA
1 GCAGGTGTAAGTGGA
44644174 GCAGGTGTAAGTGGA
1 GCAGGTGTAAGTGGA
44644189 GCAGGTGT
1 GCAGGTGT
44644197 GTTGGTGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.08, G:0.47, T:0.21
Consensus pattern (15 bp):
GCAGGTGTAAGTGGA
Found at i:44651323 original size:40 final size:40
Alignment explanation
Indices: 44651264--44651431 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
44651254 CGGGACTTTA
* * *
44651264 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
44651304 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
44651344 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
44651384 CCCGGATGT-A-AA-TTTCAGCATAATTGTCTTCGGG-CTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
44651423 CCCGGATAT
1 CCCGGATAT
44651432 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 13 0.12
40 85 0.82
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:44658690 original size:91 final size:90
Alignment explanation
Indices: 44658535--44658705 Score: 202
Period size: 91 Copynumber: 1.9 Consensus size: 90
44658525 AACAGACCGA
* * *
44658535 TGACACATAAAAAAAATAACTTTTACTGACACCGGTGCCACCTAACAGTAGGTGACAACCAAAAA
1 TGACACATAAAAAAAATAACTTTTACTGACACCGGTGCCACCTAACAATAAGCGACAACCAAAAA
*
44658600 AATGATT-TTTTTAATTAACACTGG
66 AATAATTATTTTTAATTAACACTGG
* * * * * * *
44658624 TGACACCTAAAAAAAATTAAATTTTTACTGACATCGGTGTCGCTTGACAATAAGCGAC-ACCGAA
1 TGACACATAAAAAAAA-T-AACTTTTACTGACACCGGTGCCACCTAACAATAAGCGACAACC-AA
44658688 AAAAATAATTATTTTTAA
63 AAAAATAATTATTTTTAA
44658706 CTGACACTAG
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
89 15 0.22
90 4 0.06
91 41 0.61
92 7 0.10
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (90 bp):
TGACACATAAAAAAAATAACTTTTACTGACACCGGTGCCACCTAACAATAAGCGACAACCAAAAA
AATAATTATTTTTAATTAACACTGG
Found at i:44661112 original size:19 final size:19
Alignment explanation
Indices: 44661072--44661115 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
44661062 TTTATAATTT
* *
44661072 TAAAAAATATTAATTATTA
1 TAAAAAATATTAAGTATGA
44661091 TAAAAAAGTATT-AGTATGA
1 TAAAAAA-TATTAAGTATGA
44661110 TAAAAA
1 TAAAAA
44661116 TAATTTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (19 bp):
TAAAAAATATTAAGTATGA
Found at i:44665019 original size:25 final size:25
Alignment explanation
Indices: 44664990--44665037 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
44664980 CATAAATGTA
*
44664990 GCTCTT-TATGAGGGTCCTGATATAG
1 GCTCTTCT-TGAGCGTCCTGATATAG
*
44665015 GCTCTTCTTGAGCTTCCTGATAT
1 GCTCTTCTTGAGCGTCCTGATAT
44665038 GACTCGCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.40
Consensus pattern (25 bp):
GCTCTTCTTGAGCGTCCTGATATAG
Found at i:44668142 original size:50 final size:50
Alignment explanation
Indices: 44668071--44668344 Score: 333
Period size: 50 Copynumber: 5.6 Consensus size: 50
44668061 CATTGAAGTC
* * *
44668071 GATGCCATGTTCCAGATATGGTCTTACACTGGCTCTCATATATCGAGACT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGACT
* * *
44668121 GATTCCATGTCCCAAACATGGTCTTGCACTGGCTCTCATATATCGAGATT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGACT
* * *
44668171 GATGCCAAGTCCTAGACATGGTCTTACACTGGCTCTCATATATCGAGACT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGACT
* * * * * *
44668221 GATACCATTTCCCAAACATGGTCTTACACTGGCTCTCATTTGTC-AGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAG-ACT
* * *
44668271 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTA-AT-GTGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGACT
*
44668319 GATG-CATGTCCCAGACAT-GTCTTACA
1 GATGCCATGTCCCAAACATGGTCTTACA
44668345 GTAGCACACA
Statistics
Matches: 193, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
46 8 0.04
47 13 0.07
48 6 0.03
49 4 0.02
50 162 0.84
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (50 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGAGACT
Found at i:44675868 original size:48 final size:49
Alignment explanation
Indices: 44675807--44676008 Score: 158
Period size: 50 Copynumber: 4.3 Consensus size: 49
44675797 CCTCGGCATA
* * *
44675807 GTCTTACATTGG-CTCATACATCGA-ATTCGATGCCATGTCCGAGACATG
1 GTCTTACACTGGCCTCATACATCGAGA-CCGATGCCATGTCCCAGACATG
*
44675855 GTCTTACACTGGCTCTCATATATCGAGACCGATGCCATGTCCCAGACATG
1 GTCTTACACTGGC-CTCATACATCGAGACCGATGCCATGTCCCAGACATG
* ** * * * *
44675905 GTTTTACACT--AATACAT--ATCAAG-CGGATGCTATGTCCCAAACATG
1 GTCTTACACTGGCCT-CATACATCGAGACCGATGCCATGTCCCAGACATG
* *
44675950 GTCTTACACTGGCTCTCATA-AT-GTAG-CTGATG-CATGTCCCATACAT-
1 GTCTTACACTGGC-CTCATACATCG-AGACCGATGCCATGTCCCAGACATG
44675996 GTCTTACACTGGC
1 GTCTTACACTGGC
44676009 ACACATATCA
Statistics
Matches: 127, Mismatches: 18, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
45 28 0.22
46 18 0.14
47 16 0.13
48 24 0.19
50 40 0.31
51 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (49 bp):
GTCTTACACTGGCCTCATACATCGAGACCGATGCCATGTCCCAGACATG
Found at i:44675890 original size:50 final size:49
Alignment explanation
Indices: 44675834--44676008 Score: 177
Period size: 50 Copynumber: 3.7 Consensus size: 49
44675824 ACATCGAATT
*
44675834 CGATGCCATGTCCGAGACATGGTCTTACACTGGCTCTCATATATCGAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAG-C
* ** * *
44675884 CGATGCCATGTCCCAGACATGGTTTTACACT---AAT-ACATATCAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGC
* * *
44675929 GGATGCTATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-GTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCG-AGC
* *
44675977 TGATG-CATGTCCCATACAT-GTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
44676009 ACACATATCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
45 28 0.27
46 21 0.20
47 13 0.13
48 10 0.10
49 2 0.02
50 29 0.28
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGAGC
Found at i:44675956 original size:95 final size:91
Alignment explanation
Indices: 44675835--44676005 Score: 236
Period size: 95 Copynumber: 1.8 Consensus size: 91
44675825 CATCGAATTC
* *
44675835 GATGCCATGTCCGAGACATGGTCTTACACTGGCTCTCATATATCG-AGACCGATGCCATGTCCCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA-AT-GTAG-CCGATG-CATGTCCCA
*
44675899 GACATGGTTTTACACTAATACATATCAAGCG
62 GACAT-GTCTTACACTAATACATATCAAGCG
* * *
44675930 GATGCTATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTAGCTGATGCATGTCCCATACA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAGACA
44675995 TGTCTTACACT
66 TGTCTTACACT
44676006 GGCACACATA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
91 9 0.13
92 13 0.19
93 6 0.09
94 4 0.06
95 37 0.54
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (91 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAGACA
TGTCTTACACTAATACATATCAAGCG
Found at i:44683035 original size:53 final size:54
Alignment explanation
Indices: 44682967--44683103 Score: 159
Period size: 54 Copynumber: 2.6 Consensus size: 54
44682957 CTTACCATTA
* * * * * *
44682967 CCATGTCTTGACATGGTTTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACTCACCAATG
* * * * *
44683020 TCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACTCACCAATG
*
44683074 CCATGCCTTGGCATGGTCTTACTTGGTATC
1 CCATGCCTTGGCATGGTCTTACATGGTATC
44683104 ATTAAACCCT
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 32 0.47
54 36 0.53
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (54 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAAACTCACCAATG
Found at i:44683089 original size:54 final size:53
Alignment explanation
Indices: 44682953--44683095 Score: 169
Period size: 53 Copynumber: 2.7 Consensus size: 53
44682943 CTTTCCTTTT
* * * * * *
44682953 TAAACTTACCATTACCATGTCTTGACATGGTTTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
* * * * *
44683006 TGAACTCACCATTGTCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTG
1 TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
*
44683059 TAAAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 T-AAACTTACCATTGCCATGCCTTGGCATGGTCTTAC
44683096 TTGGTATCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
53 43 0.58
54 31 0.42
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
Found at i:44691277 original size:26 final size:26
Alignment explanation
Indices: 44691222--44691277 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
44691212 AGGGTGTACA
* ***
44691222 AGGCTTTGTGTCGGTGTATATTTTTT
1 AGGCTTTGTATCGGTGTATATTTAAC
*
44691248 AGGCTTTGTATTGGTGTATATTTAAC
1 AGGCTTTGTATCGGTGTATATTTAAC
44691274 AGGC
1 AGGC
44691278 ATTAGTTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.09, G:0.27, T:0.46
Consensus pattern (26 bp):
AGGCTTTGTATCGGTGTATATTTAAC
Found at i:44695449 original size:13 final size:11
Alignment explanation
Indices: 44695414--44695454 Score: 64
Period size: 11 Copynumber: 3.5 Consensus size: 11
44695404 TCACGGAATG
44695414 ATTTCGTGAAA
1 ATTTCGTGAAA
44695425 ATTTCGTGAAA
1 ATTTCGTGAAA
44695436 ATTTCGTTTGAAA
1 ATTTCG--TGAAA
44695449 ATTTCG
1 ATTTCG
44695455 ACGTTTGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 17 0.61
13 11 0.39
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (11 bp):
ATTTCGTGAAA
Found at i:44697165 original size:40 final size:39
Alignment explanation
Indices: 44697120--44697327 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 39
44697110 CGGAATACAA
* *
44697120 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
44697160 CCGGATAGAATGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
44697200 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-AC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
44697240 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* * * *
44697280 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
44697320 CCGGATAT
1 CCGGATAT
44697328 CATTCAATTG
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.03
40 134 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:44697260 original size:80 final size:80
Alignment explanation
Indices: 44697120--44697326 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
44697110 CGGAATACAA
* * * *
44697120 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATCACTAGCAC-AATG
*
44697184 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
44697200 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-AATCACTAGCACAATG
*
44697264 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
44697280 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
44697327 TCATTCAATT
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 4 0.04
80 104 0.96
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATCACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:44703308 original size:50 final size:49
Alignment explanation
Indices: 44703182--44703355 Score: 197
Period size: 50 Copynumber: 3.5 Consensus size: 49
44703172 TGAGGTCATG
** * * *
44703182 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATAA-TTAGGTCACA
* ** *
44703233 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATAATTAGGTCACA
* * *
44703283 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-AGATAATTAGGTCACA
44703332 TGTGTAGTACTAAGTGCAGGCTAC
1 TGTGTAGTACTAAGTGCAGGCTAC
44703356 CATGCCTACC
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
49 29 0.28
50 43 0.41
51 33 0.31
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACAGATAATTAGGTCACA
Found at i:44709102 original size:49 final size:50
Alignment explanation
Indices: 44709006--44709250 Score: 262
Period size: 49 Copynumber: 4.9 Consensus size: 50
44708996 ATCTATTGTG
* ** * *
44709006 AGGTCACGTGTGTAGTACTAAGTGCAGGCTGTTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
44709056 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
44709106 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* **
44709156 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
44709206 -GGTCGCATGTGTAGTACTAAGTGTC-GGCTACTATGCGTACCAGAT
1 AGGTCACATGTGTAGTACTAAGTG-CAGGCTACTACGCGTACCAGAT
44709251 GGCCTTGTCT
Statistics
Matches: 163, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
49 77 0.47
50 49 0.30
51 37 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:44709252 original size:99 final size:100
Alignment explanation
Indices: 44709009--44709252 Score: 273
Period size: 100 Copynumber: 2.5 Consensus size: 100
44708999 TATTGTGAGG
* ** * * ** * *
44709009 TCACGTGTGTAGTACTAAGTGCAGGCTGTTACGTGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
*
44709073 TAAGTGCAGGCTACTATGCATACCCGATAACTTCGA
66 TAAGTGCAGGCTACTATG-ATACCAGATAACTTCGA
* * *
44709109 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
*
44709174 TAAGTGCAGGCTACTACATG-TACCAGATAA-TT-GG
66 TAAGTGCAGGCTACT--ATGATACCAGATAACTTCGA
* *
44709208 TCGCATGTGTAGTACTAAGTGTC-GGCTACTATGCGTACCAGATGG
1 TCACATGTGTAGTACTAAGTG-CAGGCTACTACGCGTACCAGATGG
44709253 CCTTGTCTAC
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
99 39 0.31
100 44 0.35
101 39 0.31
103 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTATGATACCAGATAACTTCGA
Found at i:44716009 original size:12 final size:12
Alignment explanation
Indices: 44715980--44716018 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
44715970 AATTGTCAAA
*
44715980 ATTGAATTAAAG
1 ATTGAATTAAAT
* *
44715992 ACTGAATAAAAT
1 ATTGAATTAAAT
44716004 ATTGAATTAAAT
1 ATTGAATTAAAT
44716016 ATT
1 ATT
44716019 AATGAGTCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (12 bp):
ATTGAATTAAAT
Found at i:44718959 original size:14 final size:14
Alignment explanation
Indices: 44718940--44718967 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
44718930 TTTCTCTCTT
44718940 TCATATTATATATA
1 TCATATTATATATA
44718954 TCATATTATATATA
1 TCATATTATATATA
44718968 AATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATATTATATATA
Found at i:44719043 original size:55 final size:56
Alignment explanation
Indices: 44718931--44719043 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 56
44718921 ACATTATTGT
* * *
44718931 TTCTCTCTTTCATATTATATATATCATATTATATATAAATAACTTTAAACTATAAGTC
1 TTCTCTCTTTCATATAATAAATATAATATTATATATAAAT-A-TTTAAACTATAAGTC
44718989 TTCTCTCTTTCATATAATAAAATATAATATTATATAT-AAT-TTTAAACTATAAGTC
1 TTCTCTCTTTCATATAAT-AAATATAATATTATATATAAATATTTAAACTATAAGTC
44719044 CTCATGAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
55 15 0.29
58 20 0.39
59 16 0.31
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (56 bp):
TTCTCTCTTTCATATAATAAATATAATATTATATATAAATATTTAAACTATAAGTC
Found at i:44719363 original size:2 final size:2
Alignment explanation
Indices: 44719356--44719390 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
44719346 ATTACATGCT
44719356 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44719391 TATCGATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:44719999 original size:25 final size:25
Alignment explanation
Indices: 44719939--44719999 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 25
44719929 ATTCTAAAAA
* * *
44719939 TATAAAAATCTAAAAAATTATATATTT
1 TATAAAAA--TAAAAAATTACAAAATT
* *
44719966 TAGAGAAATAAAAAATTACAAAATT
1 TATAAAAATAAAAAATTACAAAATT
44719991 TATAAAAAT
1 TATAAAAAT
44720000 TAATACATAA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
25 21 0.78
27 6 0.22
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (25 bp):
TATAAAAATAAAAAATTACAAAATT
Found at i:44727035 original size:30 final size:30
Alignment explanation
Indices: 44726999--44727055 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
44726989 TATAAAGTCG
44726999 TACCCCCGATGCCGCACCAAAATGCTTTCA
1 TACCCCCGATGCCGCACCAAAATGCTTTCA
44727029 TACCCCCGATGCCGCACCAAAATGCTT
1 TACCCCCGATGCCGCACCAAAATGCTT
44727056 ATAACCCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.40, G:0.14, T:0.19
Consensus pattern (30 bp):
TACCCCCGATGCCGCACCAAAATGCTTTCA
Found at i:44729538 original size:24 final size:24
Alignment explanation
Indices: 44729496--44729548 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
44729486 AGACAAACAC
*
44729496 AGCTCTTCGTGAGCGTCCTGATAT
1 AGCTCTTCATGAGCGTCCTGATAT
*
44729520 AAGCTCTT-ATGAGCTTCCTGATAT
1 -AGCTCTTCATGAGCGTCCTGATAT
44729544 AGCTC
1 AGCTC
44729549 GCTTGAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 14 0.54
25 7 0.27
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (24 bp):
AGCTCTTCATGAGCGTCCTGATAT
Found at i:44729559 original size:23 final size:24
Alignment explanation
Indices: 44729511--44729559 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
44729501 TTCGTGAGCG
* *
44729511 TCCTGATATAAGCTCTTATGAGCT
1 TCCTGATATAAGCTCCTATGAACT
44729535 TCCTGATAT-AGCTCGCT-TGAACT
1 TCCTGATATAAGCTC-CTATGAACT
44729558 TC
1 TC
44729560 TTGTTATGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (24 bp):
TCCTGATATAAGCTCCTATGAACT
Found at i:44730207 original size:29 final size:29
Alignment explanation
Indices: 44730165--44730224 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
44730155 ATATGTAAGT
44730165 TGAGACGAGTAATAAACTCAAGTGTGACA
1 TGAGACGAGTAATAAACTCAAGTGTGACA
44730194 TGAGACGAGTAATAAACTCAAGTGTGACA
1 TGAGACGAGTAATAAACTCAAGTGTGACA
44730223 TG
1 TG
44730225 TTGAGAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (29 bp):
TGAGACGAGTAATAAACTCAAGTGTGACA
Found at i:44735939 original size:46 final size:45
Alignment explanation
Indices: 44735865--44736025 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 45
44735855 CGATGCCATC
*
44735865 TCCCAGACATGGTCTTACACT-GACACATCTCGTAGCCGATGCTTG
1 TCCCAGACATGGTCTTACACTGGATACATCTC-TAGCCGATGCTTG
*
44735910 TCCCAGACAT-GTCTTACACTGGATTACATCT-TAAGTCCGATGGTTG
1 TCCCAGACATGGTCTTACACTGGA-TACATCTCT-AG-CCGATGCTTG
* * * *
44735956 TCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACT-GGA-TACATCTCTA-GCCGATG-CTTG
44736003 TCCCAGACATGGTCTTACACTGG
1 TCCCAGACATGGTCTTACACTGG
44736026 CTCACACCAA
Statistics
Matches: 98, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
44 11 0.11
45 14 0.14
46 46 0.47
47 17 0.17
48 10 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
TCCCAGACATGGTCTTACACTGGATACATCTCTAGCCGATGCTTG
Found at i:44739372 original size:16 final size:16
Alignment explanation
Indices: 44739351--44739428 Score: 64
Period size: 16 Copynumber: 5.4 Consensus size: 16
44739341 ATAAGGGACA
44739351 ATATGATTAGTTTTAG
1 ATATGATTAGTTTTAG
*
44739367 ATATGAATAG---TA-
1 ATATGATTAGTTTTAG
*
44739379 ACATGATTAGTTTTAG
1 ATATGATTAGTTTTAG
**
44739395 ATATGAACAG---TA-
1 ATATGATTAGTTTTAG
44739407 ATATGATTAGTTTTAG
1 ATATGATTAGTTTTAG
44739423 ATATGA
1 ATATGA
44739429 ACAGTAAATG
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
12 16 0.35
13 4 0.09
15 4 0.09
16 22 0.48
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (16 bp):
ATATGATTAGTTTTAG
Found at i:44739385 original size:28 final size:27
Alignment explanation
Indices: 44739353--44739439 Score: 147
Period size: 28 Copynumber: 3.1 Consensus size: 27
44739343 AAGGGACAAT
*
44739353 ATGATTAGTTTTAGATATGAATAGTAA
1 ATGATTAGTTTTAGATATGAACAGTAA
44739380 CATGATTAGTTTTAGATATGAACAGTAA
1 -ATGATTAGTTTTAGATATGAACAGTAA
44739408 TATGATTAGTTTTAGATATGAACAGTAA
1 -ATGATTAGTTTTAGATATGAACAGTAA
44739436 ATGA
1 ATGA
44739440 CATGAACTAC
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
27 4 0.07
28 53 0.93
ACGTcount: A:0.40, C:0.03, G:0.18, T:0.38
Consensus pattern (27 bp):
ATGATTAGTTTTAGATATGAACAGTAA
Found at i:44741251 original size:15 final size:14
Alignment explanation
Indices: 44741218--44741244 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
44741208 AAAAATATAT
44741218 AAATTTTAAAAATA
1 AAATTTTAAAAATA
44741232 AAATTTTAAAAAT
1 AAATTTTAAAAAT
44741245 GATAATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATTTTAAAAATA
Found at i:44741779 original size:7 final size:7
Alignment explanation
Indices: 44741767--44741794 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
44741757 AATTAACAAA
44741767 AAAATAT
1 AAAATAT
44741774 AAAATAT
1 AAAATAT
44741781 AAAATAT
1 AAAATAT
44741788 AAAATAT
1 AAAATAT
44741795 GAGGAGTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATAT
Found at i:44742853 original size:16 final size:15
Alignment explanation
Indices: 44742832--44742864 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
44742822 TGCTTTTTCA
44742832 TCATTTTCTACCTCTT
1 TCATTTTCTACCT-TT
44742848 TCATTTTCTACCTTT
1 TCATTTTCTACCTTT
44742863 TC
1 TC
44742865 CATCTATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.12, C:0.30, G:0.00, T:0.58
Consensus pattern (15 bp):
TCATTTTCTACCTTT
Found at i:44745695 original size:39 final size:39
Alignment explanation
Indices: 44745628--44745719 Score: 112
Period size: 39 Copynumber: 2.4 Consensus size: 39
44745618 TCCCTACCTT
* ** * *
44745628 CACTATTTAATTCCTCATTGTAATTTGGTAACTCTGCCC
1 CACTATTTAGTTCCTCATTACAAGTTGGTAACTCAGCCC
* * *
44745667 TACTCTTTAGTTCCTCATTACAAGTTGGTATCTCAGCCC
1 CACTATTTAGTTCCTCATTACAAGTTGGTAACTCAGCCC
44745706 CACTATTTAGTTCC
1 CACTATTTAGTTCC
44745720 CTTTCCATAA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (39 bp):
CACTATTTAGTTCCTCATTACAAGTTGGTAACTCAGCCC
Found at i:44746356 original size:17 final size:16
Alignment explanation
Indices: 44746332--44746375 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
44746322 CCAACAAAAA
44746332 ATAT-TACAATACAAT
1 ATATATACAATACAAT
*
44746347 ATATAATACAAATGCAAT
1 ATAT-ATAC-AATACAAT
44746365 ATATATACAAT
1 ATATATACAAT
44746376 GAAAACAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 4 0.16
16 3 0.12
17 7 0.28
18 11 0.44
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (16 bp):
ATATATACAATACAAT
Found at i:44756218 original size:40 final size:40
Alignment explanation
Indices: 44756159--44756366 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
44756149 CAATTGAATG
* * * *
44756159 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44756199 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
44756239 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
44756279 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44756319 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
44756359 ATATCCGG
1 ATATCCGG
44756367 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:44756297 original size:80 final size:80
Alignment explanation
Indices: 44756161--44756366 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
44756151 ATTGAATGAT
* * ** * * *
44756161 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
44756225 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
44756241 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
44756306 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
44756321 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
44756367 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:44764220 original size:40 final size:40
Alignment explanation
Indices: 44764161--44764368 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
44764151 CAATTGAATG
* * * *
44764161 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44764201 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
44764241 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
44764281 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44764321 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
44764361 ATATCCGG
1 ATATCCGG
44764369 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:44764299 original size:80 final size:80
Alignment explanation
Indices: 44764163--44764368 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
44764153 ATTGAATGAT
* * ** * * *
44764163 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
44764227 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
44764243 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
44764308 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
44764323 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
44764369 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:44769274 original size:20 final size:20
Alignment explanation
Indices: 44769249--44769294 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
44769239 GTTGGGCCTT
44769249 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
44769269 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
44769288 GCCCATA
1 GCCCATA
44769295 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:44779722 original size:33 final size:33
Alignment explanation
Indices: 44779685--44779750 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
44779675 CATTTCATCT
44779685 TAATATTATCACAGTTATATAATTCACTTTAGA
1 TAATATTATCACAGTTATATAATTCACTTTAGA
44779718 TAATATTATCACAGTTATATAATTCACTTTAGA
1 TAATATTATCACAGTTATATAATTCACTTTAGA
44779751 CAGACTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (33 bp):
TAATATTATCACAGTTATATAATTCACTTTAGA
Found at i:44785733 original size:40 final size:40
Alignment explanation
Indices: 44785674--44785881 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
44785664 CAATTGAATG
* * * *
44785674 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44785714 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
44785754 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
44785794 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44785834 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
44785874 ATATCCGG
1 ATATCCGG
44785882 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:44785812 original size:80 final size:80
Alignment explanation
Indices: 44785676--44785881 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
44785666 ATTGAATGAT
* * ** * * *
44785676 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
44785740 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
44785756 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
44785821 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
44785836 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
44785882 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:44793102 original size:40 final size:40
Alignment explanation
Indices: 44793043--44793250 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
44793033 CAATTGAATG
* * * *
44793043 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44793083 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
44793123 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
44793163 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
44793203 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
44793243 ATATCCGG
1 ATATCCGG
44793251 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:44793181 original size:80 final size:80
Alignment explanation
Indices: 44793045--44793250 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
44793035 ATTGAATGAT
* * ** * * *
44793045 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
44793109 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
44793125 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
44793190 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
44793205 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
44793251 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:44794642 original size:30 final size:30
Alignment explanation
Indices: 44794607--44794668 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
44794597 TCAGGGTGTT
44794607 ACACATCATTAGATAGCCACAAAGGAATCC
1 ACACATCATTAGATAGCCACAAAGGAATCC
* *
44794637 ACACATCATTAGATAGTCACAAAGGCATCC
1 ACACATCATTAGATAGCCACAAAGGAATCC
44794667 AC
1 AC
44794669 TTGAATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (30 bp):
ACACATCATTAGATAGCCACAAAGGAATCC
Found at i:44794880 original size:29 final size:31
Alignment explanation
Indices: 44794832--44794948 Score: 107
Period size: 31 Copynumber: 3.9 Consensus size: 31
44794822 TAGCATAGAA
* *
44794832 CAACCACAAAGGCTTCCACATACAACAAGTT
1 CAACCAAAAAGGCTTCCACATATAACAAGTT
* **
44794863 CTACCAAAAAGGC-T-CACATATAACACAGAA
1 CAACCAAAAAGGCTTCCACATATAACA-AGTT
* *
44794893 CAACCACAAAGGCTTCCACATATAACACGTT
1 CAACCAAAAAGGCTTCCACATATAACAAGTT
** *
44794924 CCGCCAAAAAGG-AT-CACATATAACA
1 CAACCAAAAAGGCTTCCACATATAACA
44794949 GATTTAGTTA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
29 21 0.30
30 15 0.22
31 22 0.32
32 11 0.16
ACGTcount: A:0.44, C:0.30, G:0.10, T:0.15
Consensus pattern (31 bp):
CAACCAAAAAGGCTTCCACATATAACAAGTT
Found at i:44794894 original size:61 final size:61
Alignment explanation
Indices: 44794828--44794948 Score: 197
Period size: 61 Copynumber: 2.0 Consensus size: 61
44794818 CATGTAGCAT
* *
44794828 AGAACAACCACAAAGGCTTCCACATACAACAAGTTCTACCAAAAAGGCTCACATATAACAC
1 AGAACAACCACAAAGGCTTCCACATACAACAAGTTCCACCAAAAAGGATCACATATAACAC
* * *
44794889 AGAACAACCACAAAGGCTTCCACATATAACACGTTCCGCCAAAAAGGATCACATATAACA
1 AGAACAACCACAAAGGCTTCCACATACAACAAGTTCCACCAAAAAGGATCACATATAACA
44794949 GATTTAGTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.45, C:0.29, G:0.11, T:0.15
Consensus pattern (61 bp):
AGAACAACCACAAAGGCTTCCACATACAACAAGTTCCACCAAAAAGGATCACATATAACAC
Found at i:44794906 original size:30 final size:32
Alignment explanation
Indices: 44794828--44794920 Score: 120
Period size: 30 Copynumber: 3.0 Consensus size: 32
44794818 CATGTAGCAT
*
44794828 AGAACAACCACAAAGGCTTCCACATACAACA-
1 AGAACAACCACAAAGGCTTCCACATATAACAC
** * *
44794859 AGTTCTACCAAAAAGGC-T-CACATATAACAC
1 AGAACAACCACAAAGGCTTCCACATATAACAC
44794889 AGAACAACCACAAAGGCTTCCACATATAACAC
1 AGAACAACCACAAAGGCTTCCACATATAACAC
44794921 GTTCCGCCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
29 10 0.20
30 14 0.28
31 14 0.28
32 12 0.24
ACGTcount: A:0.46, C:0.30, G:0.10, T:0.14
Consensus pattern (32 bp):
AGAACAACCACAAAGGCTTCCACATATAACAC
Found at i:44801827 original size:16 final size:16
Alignment explanation
Indices: 44801806--44801852 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
44801796 CGGCAAATCT
44801806 CGAAATGCCGAAAAGC
1 CGAAATGCCGAAAAGC
* *
44801822 CGAAATGCCAAAAAAC
1 CGAAATGCCGAAAAGC
* *
44801838 TGAAATGCTGAAAAG
1 CGAAATGCCGAAAAG
44801853 TTAAAAGTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.11
Consensus pattern (16 bp):
CGAAATGCCGAAAAGC
Found at i:44802109 original size:29 final size:29
Alignment explanation
Indices: 44802067--44802194 Score: 195
Period size: 29 Copynumber: 4.4 Consensus size: 29
44802057 ATGAAACCAT
44802067 CCATATGAATGTGATTTGGGCCTAATGGG
1 CCATATGAATGTGATTTGGGCCTAATGGG
*
44802096 CCATACGAATGTGATTTGGGCCTAATGGG
1 CCATATGAATGTGATTTGGGCCTAATGGG
44802125 CCATA-GAAATGTGATTTGGGCCTAATGGG
1 CCATATG-AATGTGATTTGGGCCTAATGGG
* * *
44802154 CCATATGAATGAGATTTGGGCCTAGTGTG
1 CCATATGAATGTGATTTGGGCCTAATGGG
*
44802183 CCATATGCATGT
1 CCATATGAATGT
44802195 ATGTAGACTT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.01
29 89 0.98
30 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
CCATATGAATGTGATTTGGGCCTAATGGG
Found at i:44804485 original size:47 final size:47
Alignment explanation
Indices: 44804431--44804621 Score: 292
Period size: 47 Copynumber: 4.1 Consensus size: 47
44804421 GGATTTTATA
44804431 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * * *
44804478 TGATGAATGTGAGCATGAATATGTGTGACAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * * *
44804525 TGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATAGCCAATA
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* *
44804572 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCTAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
44804619 TGA
1 TGA
44804622 AATATGTATG
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
Found at i:44804549 original size:23 final size:23
Alignment explanation
Indices: 44804475--44804549 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
44804465 CGAATGGCCA
*
44804475 ATGTGATGAATGTGAGCATGAAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
44804498 ATGTG-TGACAAG-GCCGAATGGCCA-
1 ATGTGATGA-ATGTG-AGCAT-G-CAT
44804522 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
44804545 ATGTG
1 ATGTG
44804550 TGATAAGGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 6 0.16
23 16 0.42
24 11 0.29
25 5 0.13
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.27
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:44804657 original size:48 final size:48
Alignment explanation
Indices: 44804591--44804725 Score: 198
Period size: 48 Copynumber: 2.8 Consensus size: 48
44804581 TGAACATGCA
* * * *
44804591 TATATGTGATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTATGAGATATG
* * * *
44804639 TATATGTGGTAAAGCCGAATGGCTGGTGCGGAATATGTATGAGGTATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTATGAGATATG
44804687 TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTA
44804726 GGCGACGTGC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTATGAGATATG
Found at i:44804980 original size:37 final size:37
Alignment explanation
Indices: 44804872--44804980 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
44804862 GGAAATATAT
* *
44804872 TCCGGGTAAGACCCGATGACTACGTATGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
44804909 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
44804946 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
44804981 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:44817482 original size:40 final size:40
Alignment explanation
Indices: 44817435--44817618 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
44817425 ATCGCACAAG
*
44817435 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCACAAAT
* *
44817475 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
44817515 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
44817555 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAACACAAA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
44817595 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
44817619 CATTCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 114 0.94
41 7 0.06
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:44817533 original size:80 final size:80
Alignment explanation
Indices: 44817429--44817618 Score: 251
Period size: 80 Copynumber: 2.4 Consensus size: 80
44817419 TAACCAATCG
* *
44817429 CACAAGGCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAATGCCTTCGGGA-CTTAGCC
1 CACAAAGCCTTCGGGTCTTAGCCCGGATATAG-TAACTAGCATAAATGCCTTC-GGATCTTAGCC
* *
44817492 CGGATATAGTCGC-TAG
64 CGGATATAGTCACTTAA
* * * *
44817508 CACAAATGCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGTCC
1 CACAAA-GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCC
44817573 GGATATAGTCACTTAA
65 GGATATAGTCACTTAA
*
44817589 CACAAAGCCTTCGGGACTTAGCCCGGATAT
1 CACAAAGCCTTCGGGTCTTAGCCCGGATAT
44817619 CATTCGAATA
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 8 0.08
80 79 0.82
81 9 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CACAAAGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCCG
GATATAGTCACTTAA
Found at i:44819409 original size:30 final size:29
Alignment explanation
Indices: 44819340--44819399 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 29
44819330 GGCTGTCACA
44819340 AACCGATCATCTTTTTGAATTTTTTTAAGTCC
1 AACCGATCATCTTTTTGAATTTTTTTAA---C
*
44819372 AACCGATCGTCTTTTTGAATTTTTTTAA
1 AACCGATCATCTTTTTGAATTTTTTTAA
44819400 AACTTCGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (29 bp):
AACCGATCATCTTTTTGAATTTTTTTAAC
Found at i:44822091 original size:40 final size:40
Alignment explanation
Indices: 44822034--44822317 Score: 446
Period size: 40 Copynumber: 7.1 Consensus size: 40
44822024 CGAGATTTAA
* * * *
44822034 CCGGATATAGCT-ACTCGCTCGAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
44822074 CTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
44822114 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
44822154 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
44822194 CCGGATATAGTAACTCGCACAAATGCTTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
44822234 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
44822274 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
44822314 CCGG
1 CCGG
44822318 TTATCATCCA
Statistics
Matches: 229, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 227 0.99
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:44827423 original size:46 final size:46
Alignment explanation
Indices: 44827373--44827548 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
44827363 TGGTTGAGTA
*
44827373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
44827419 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44827464 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44827512 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44827549 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44827531 original size:93 final size:93
Alignment explanation
Indices: 44827372--44827541 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
44827362 ATGGTTGAGT
* *
44827372 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
44827437 AGTCCGAGTTCGTGAAATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
*
44827465 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
*
44827530 AGTCTGAGTTCG
66 AGTCCGAGTTCG
44827542 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGC
Found at i:44832965 original size:39 final size:40
Alignment explanation
Indices: 44832887--44833142 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
44832877 AAGCCAAGTA
* * * *
44832887 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
44832926 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
44832965 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
44833005 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
44833045 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
44833084 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
44833124 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44833143 TTATCATCCA
Statistics
Matches: 204, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
39 90 0.44
40 114 0.56
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:44833020 original size:79 final size:79
Alignment explanation
Indices: 44832887--44833142 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 79
44832877 AAGCCAAGTA
* * * * *
44832887 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
44832950 GTAACTCGCACAATG
65 GTAACTCGCACAATG
44832965 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
44833030 TAACTCGCACAAATG
66 TAACTCGCAC-AATG
44833045 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
44833108 GTCACTAGCGCA-AATG
65 GTAACT--CGCACAATG
44833124 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44833143 TTATCATCCA
Statistics
Matches: 165, Mismatches: 6, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
78 14 0.08
79 125 0.76
80 22 0.13
81 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAATG
Found at i:44845321 original size:40 final size:40
Alignment explanation
Indices: 44845194--44845323 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
44845184 ATGCTGGAAA
* *
44845194 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
44845234 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
44845274 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
44845314 TTATATCCGG
1 TTATATCCGG
44845324 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:44850732 original size:39 final size:39
Alignment explanation
Indices: 44850651--44850816 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
44850641 AAATTGAATG
* *
44850651 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
44850690 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
44850729 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
44850769 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
44850809 ATATCCGG
1 ATATCCGG
44850817 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:44858761 original size:78 final size:77
Alignment explanation
Indices: 44858631--44858779 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 77
44858621 AAATTGAATG
*
44858631 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
44858696 TGTGCAGTGGCT
66 TGTGCAGTGGCT
* * * *
44858708 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTGA-AATTATATCCGGGCTAAGACCCGAAGGC
*
44858771 ATTTGTGCA
63 AATTGTGCA
44858780 CGGATTATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
77 19 0.30
78 44 0.70
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (77 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAGTGGCT
Found at i:44858791 original size:39 final size:39
Alignment explanation
Indices: 44858631--44858793 Score: 181
Period size: 39 Copynumber: 4.2 Consensus size: 39
44858621 AAATTGAATG
* * * *
44858631 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGAGATT
* * **
44858669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGAGATT
44858708 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAGAG-ATT
* *
44858747 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACG-GATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GAGATT
44858786 ATATCCGG
1 ATATCCGG
44858794 TTATATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 18 0.17
39 82 0.79
40 3 0.03
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGAGATT
Found at i:44866144 original size:26 final size:26
Alignment explanation
Indices: 44866109--44866169 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
44866099 CTTCAAACTA
*
44866109 TTATATATTATTTATTTTAAACTGTT
1 TTATATATTATTTATTTCAAACTGTT
*
44866135 TTATATATTATTTATTTCAAATTGTT
1 TTATATATTATTTATTTCAAACTGTT
44866161 TTATATATT
1 TTATATATT
44866170 TGATTTGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (26 bp):
TTATATATTATTTATTTCAAACTGTT
Found at i:44866175 original size:24 final size:23
Alignment explanation
Indices: 44866100--44866175 Score: 71
Period size: 26 Copynumber: 3.1 Consensus size: 23
44866090 GCCTTTTAGC
* *
44866100 TTCAAACTATTATATATTATTTAT
1 TTCAAACTGTTTTATA-TATTTAT
*
44866124 TTTAAACTGTTTTATATATTATTTAT
1 TTCAAACTG-TTT-TATA-TATTTAT
*
44866150 TTCAAATTGTTTTATATATTTGAT
1 TTCAAACTGTTTTATATATTT-AT
44866174 TT
1 TT
44866176 GATTTTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 5 0.11
24 15 0.34
25 5 0.11
26 19 0.43
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (23 bp):
TTCAAACTGTTTTATATATTTAT
Found at i:44866340 original size:3 final size:3
Alignment explanation
Indices: 44866332--44866361 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
44866322 TTCTTTACCT
*
44866332 TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
44866362 CTTTCGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:44876699 original size:38 final size:38
Alignment explanation
Indices: 44876609--44876757 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 38
44876599 AATTGAATGA
* * * *
44876609 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTCAC
* *
44876648 TATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCAC
*
44876686 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTCA--C
*
44876726 TATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCA
44876758 CATGGTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
37 9 0.10
38 32 0.34
39 13 0.14
40 38 0.40
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCAC
Found at i:44878182 original size:40 final size:42
Alignment explanation
Indices: 44878138--44878236 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 42
44878128 GTGTTACACT
*
44878138 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTATA-A-A
1 TGGCACTAAGTGTGCGAG-TTAACATAGCTTCGGCTATATATA
* ** *
44878178 TGGCACTACGTGTGCGAGTTGGCATAGCTTTGGCTATATATA
1 TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATATA
*
44878220 AGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
44878237 TACTGACTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
40 31 0.63
41 2 0.04
42 16 0.33
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATATA
Found at i:44882441 original size:13 final size:13
Alignment explanation
Indices: 44882423--44882456 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
44882413 AGTCACACAC
44882423 CCGTGTGGGTAGG
1 CCGTGTGGGTAGG
44882436 CCGTGTGGGTAGG
1 CCGTGTGGGTAGG
44882449 CCGTGTGG
1 CCGTGTGG
44882457 TCAGACACGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.18, G:0.53, T:0.24
Consensus pattern (13 bp):
CCGTGTGGGTAGG
Found at i:44883869 original size:48 final size:47
Alignment explanation
Indices: 44883817--44884021 Score: 197
Period size: 48 Copynumber: 4.4 Consensus size: 47
44883807 TATCCCGAAT
*
44883817 ATGGTCTTACATGGGATCACATATCGACGACAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATG-CAATGCCATGTCCCAGAC
** * * *
44883865 ATGGTCTTACATGGGATCGTAGATTGATGCTAATGCCATGTCCTAGAC
1 ATGGTCTTACATGGGATCACATATCGATGC-AATGCCATGTCCCAGAC
* *
44883913 ATGGTCTTACATGGAATCACATATCGATG---T-CGATAG-CCCAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCAATGCCAT-GTCCCAGAC
* ** * *
44883955 TATGGTCTTACACGAAATTACATATCGATGCCAAAGCCATGTCCCAGAC
1 -ATGGTCTTACATGGGATCACATATCGATG-CAATGCCATGTCCCAGAC
*
44884004 ATGGTATTACATGGGATC
1 ATGGTCTTACATGGGATC
44884022 GCACAAAACC
Statistics
Matches: 124, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 33 0.27
44 2 0.02
47 2 0.02
48 85 0.69
49 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
ATGGTCTTACATGGGATCACATATCGATGCAATGCCATGTCCCAGAC
Found at i:44890021 original size:49 final size:49
Alignment explanation
Indices: 44889949--44890353 Score: 667
Period size: 49 Copynumber: 8.4 Consensus size: 49
44889939 TTTGTATGAG
*
44889949 GTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
44889998 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
44890047 GTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
44890096 GTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
44890145 GTATATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
44890193 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
44890242 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * *
44890289 GTGTATATATGTGATAGGGTCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
44890338 GTATA-A-ATGTGATAAG
1 GTATATATATGTGATAAG
44890354 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 48 0.14
48 54 0.16
49 236 0.70
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:44890282 original size:195 final size:194
Alignment explanation
Indices: 44889949--44890353 Score: 681
Period size: 195 Copynumber: 2.1 Consensus size: 194
44889939 TTTGTATGAG
44889949 GTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATA
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATA
* *
44890014 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGAC
66 AGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAC
* *
44890079 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAG
131 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
44890144 T
194 T
* *
44890145 GTATATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAGTGTGTATATATGTGATA
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATA
*
44890209 AGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
66 AGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAC
* * *
44890274 GTGATGAATGTGAAGGTGTATATATGTGATAGGGTCGAATGGCCAATGTGATGAATGTGAAAGT
131 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGT
44890338 GTATA-A-ATGTGATAAG
1 GTATATATATGTGATAAG
44890354 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
191 10 0.05
192 1 0.01
193 49 0.25
194 3 0.02
195 105 0.53
196 31 0.16
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (194 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATA
AGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAC
GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGT
Found at i:44909081 original size:29 final size:29
Alignment explanation
Indices: 44909038--44909096 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
44909028 AACCACTTAG
44909038 ACTAAGGTTCATTTCATATTAGTTTTATT
1 ACTAAGGTTCATTTCATATTAGTTTTATT
*
44909067 ACTAAGGTTCCTTTCATATTAGTTTTATT
1 ACTAAGGTTCATTTCATATTAGTTTTATT
44909096 A
1 A
44909097 ATACTAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (29 bp):
ACTAAGGTTCATTTCATATTAGTTTTATT
Found at i:44914772 original size:85 final size:85
Alignment explanation
Indices: 44914622--44914784 Score: 186
Period size: 85 Copynumber: 1.9 Consensus size: 85
44914612 GTCTGAGACA
* * * * * * **
44914622 TCGTGTAAGACCTTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTATAAGACCCTGTCTGGGACAAAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGA
*
44914687 CATCAGTATTGTATCTAATT
66 CATCAGCATTGTATCTAATT
* *
44914707 TCGTATAAGACCCTGTCTGGGACAAAGGCATCAATATTGA-A-TTACATGTAAGACCACGTCCGG
1 TCGTATAAGACCCTGTCTGGGACAAAGGCATC--GATTGAGATTTACATATAAGACCACGTCCGG
*
44914770 GACATCGGCATTGTA
64 GACATCAGCATTGTA
44914785 CTTGTTTATG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
85 58 0.91
86 1 0.02
87 5 0.08
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (85 bp):
TCGTATAAGACCCTGTCTGGGACAAAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGA
CATCAGCATTGTATCTAATT
Found at i:44929978 original size:22 final size:23
Alignment explanation
Indices: 44929953--44930000 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
44929943 CTGAATTTTT
44929953 TTCT-TTTTGCCCCT-GAATTGCA
1 TTCTGTTTT-CCCCTAGAATTGCA
* *
44929975 TTCTGTTTTCTCCTAGATTTGCA
1 TTCTGTTTTCCCCTAGAATTGCA
44929998 TTC
1 TTC
44930001 GACCACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50
Consensus pattern (23 bp):
TTCTGTTTTCCCCTAGAATTGCA
Found at i:44937277 original size:18 final size:18
Alignment explanation
Indices: 44937250--44937338 Score: 133
Period size: 18 Copynumber: 4.9 Consensus size: 18
44937240 CCAACTACTA
*
44937250 TATACGTGAACAGTACCG
1 TATACGTGAATAGTACCG
* *
44937268 TATACATGAATAGTGCCG
1 TATACGTGAATAGTACCG
*
44937286 TATACGTAAATAGTACCG
1 TATACGTGAATAGTACCG
*
44937304 TATACGTGAATAGTGCCG
1 TATACGTGAATAGTACCG
44937322 TATACGTGAATAGTACC
1 TATACGTGAATAGTACC
44937339 ATAAACGGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (18 bp):
TATACGTGAATAGTACCG
Found at i:44937301 original size:36 final size:36
Alignment explanation
Indices: 44937250--44937338 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
44937240 CCAACTACTA
*
44937250 TATACGTGAACAGTACCGTATACATGAATAGTGCCG
1 TATACGTGAATAGTACCGTATACATGAATAGTGCCG
* *
44937286 TATACGTAAATAGTACCGTATACGTGAATAGTGCCG
1 TATACGTGAATAGTACCGTATACATGAATAGTGCCG
44937322 TATACGTGAATAGTACC
1 TATACGTGAATAGTACC
44937339 ATAAACGGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (36 bp):
TATACGTGAATAGTACCGTATACATGAATAGTGCCG
Found at i:44944736 original size:46 final size:46
Alignment explanation
Indices: 44944609--44944737 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
44944599 TGGTTGAGCA
* *
44944609 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
44944655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
44944701 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44944738 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 78 0.99
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:44949968 original size:136 final size:136
Alignment explanation
Indices: 44949724--44949991 Score: 482
Period size: 136 Copynumber: 2.0 Consensus size: 136
44949714 TTAGAGTCAT
*
44949724 TTTGATATTTTTTGAGCTATGATTGTTAGCCATGTGATTTGGCTTGTTAATGATGTAAATGTTGG
1 TTTGATATGTTTTGAGCTATGATTGTTAGCCATGTGATTTGGCTTGTTAATGATGTAAATGTTGG
*
44949789 TATGTTCTTAGCCATTTAAGTTGGCTTAAGTTATGTGATTGATAAGTGATATATATGATGCATAT
66 TATGTTCTTAGCCATTTAAGTTGGCTTAAGTTATGTGATTGATAAGAGATATATATGATGCATAT
44949854 AAGGCA
131 AAGGCA
* *
44949860 TTTGATATGTTTTGAGCTATGATTTTTAGCCATGTGATTTGGTTTGTTAATGATGTAAATGTTGG
1 TTTGATATGTTTTGAGCTATGATTGTTAGCCATGTGATTTGGCTTGTTAATGATGTAAATGTTGG
* *
44949925 TATGTTTTTAGCCATTTATGTTGGCTTAAGTTATGTGATTGATAAGAGATATATATGATGCATAT
66 TATGTTCTTAGCCATTTAAGTTGGCTTAAGTTATGTGATTGATAAGAGATATATATGATGCATAT
44949990 AA
131 AA
44949992 TGCCTTATAT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
136 126 1.00
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.45
Consensus pattern (136 bp):
TTTGATATGTTTTGAGCTATGATTGTTAGCCATGTGATTTGGCTTGTTAATGATGTAAATGTTGG
TATGTTCTTAGCCATTTAAGTTGGCTTAAGTTATGTGATTGATAAGAGATATATATGATGCATAT
AAGGCA
Found at i:44951085 original size:161 final size:161
Alignment explanation
Indices: 44950811--44951260 Score: 749
Period size: 161 Copynumber: 2.8 Consensus size: 161
44950801 TCGAACCTCA
* * *
44950811 TTTAAGTAAGTTTTAAGGTCTCGTAAACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
1 TTTAAGCATGTTTTAAGGTCTCATAAACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
* ** *
44950876 GTGATATTGAATGTTTGATAATTGTTATATTGTTTGGTAATACCTCGTAACCCTATTCT-AGCGA
66 GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTCGTAACCCTATTCTGA-CGA
* *
44950940 TGGATACGGGTTAGGGGTATTACATTTATTGG
130 TGAATACGGGTTAGGGGTATTACATTTATTAG
*
44950972 TTTAAGCATGTTTTAAGGTCTCATAGACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
1 TTTAAGCATGTTTTAAGGTCTCATAAACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
44951037 GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTCGTAACCCTATTCTGACGAT
66 GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTCGTAACCCTATTCTGACGAT
44951102 GAATACGGGTTAGGGGTATTACATTTATTAG
131 GAATACGGGTTAGGGGTATTACATTTATTAG
* * *
44951133 TTTAAGCATGTTTTAAGGTTTCACAAACCTATTTAAGAGACTTTGTGCATGTGAATGAATGAGAT
1 TTTAAGCATGTTTTAAGGTCTCATAAACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
* *
44951198 GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTTGTAACCCTATTATGACG
66 GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTCGTAACCCTATTCTGACG
44951261 GCGGATACGG
Statistics
Matches: 272, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
161 271 1.00
162 1 0.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.38
Consensus pattern (161 bp):
TTTAAGCATGTTTTAAGGTCTCATAAACCTATTTAAGGGACTTTGTGCATGTGAATGAATGAGAT
GTGATATTGAATGTTTGATAAATGTTATATTGTCCGGTAATGCCTCGTAACCCTATTCTGACGAT
GAATACGGGTTAGGGGTATTACATTTATTAG
Found at i:44956843 original size:49 final size:48
Alignment explanation
Indices: 44956771--44956880 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
44956761 GCTCGACAGG
* * * *
44956771 GACAC-GCTCGTGTGAGGTGGCTTAGGCCGTGTTTAGAGTCTGCTAAATA
1 GACACGGC-CGTGTGAGGTGGCTTAGGACATG-TTACAATCTGCTAAATA
*
44956820 GACACGGCCGTGTG-GTGTGGCTTAGGACATGTTACAATCTGTTAAATA
1 GACACGGCCGTGTGAG-GTGGCTTAGGACATGTTACAATCTGCTAAATA
*
44956868 GACACGGGCGTGT
1 GACACGGCCGTGT
44956881 CAACTACCCG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 27 0.51
49 24 0.45
50 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (48 bp):
GACACGGCCGTGTGAGGTGGCTTAGGACATGTTACAATCTGCTAAATA
Found at i:44962762 original size:25 final size:25
Alignment explanation
Indices: 44962728--44962788 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
44962718 CTAGACATTC
44962728 AAGATATTGGGCAATATATTCAAAA
1 AAGATATTGGGCAATATATTCAAAA
44962753 AAGATATTGGGCAATATATTCAAAA
1 AAGATATTGGGCAATATATTCAAAA
44962778 AAGATATTGGG
1 AAGATATTGGG
44962789 AAAAACACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.28
Consensus pattern (25 bp):
AAGATATTGGGCAATATATTCAAAA
Found at i:44963405 original size:41 final size:41
Alignment explanation
Indices: 44963287--44963407 Score: 188
Period size: 41 Copynumber: 3.0 Consensus size: 41
44963277 TGTAAAACAT
* *
44963287 AGCAATAGCGGCACTTTTGGTAAAACGCCGCTAAAAGTCGG
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAATTCGG
* * *
44963328 GGCAATAGCCGTGCTTTTGGTAAAACGCCGCTAAAATTCGG
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAATTCGG
*
44963369 AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAATTC
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAATTC
44963408 ATATAACCCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (41 bp):
AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAATTCGG
Found at i:44963641 original size:7 final size:7
Alignment explanation
Indices: 44963629--44963692 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
44963619 TTTATTTTTT
*
44963629 GGTTTAC
1 GGTTTAA
44963636 GGTTTAA
1 GGTTTAA
**
44963643 TATTTAA
1 GGTTTAA
44963650 GGTTTAA
1 GGTTTAA
* *
44963657 GGTCTAT
1 GGTTTAA
*
44963664 GGTTTAG
1 GGTTTAA
*
44963671 GGTTTTAT
1 GG-TTTAA
44963679 GGTTTAA
1 GGTTTAA
44963686 GGTTTAA
1 GGTTTAA
44963693 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:44963681 original size:15 final size:15
Alignment explanation
Indices: 44963645--44963695 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
44963635 CGGTTTAATA
*
44963645 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
44963659 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
44963674 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
44963689 TTAATGG
1 TTTATGG
44963696 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:44964297 original size:8 final size:7
Alignment explanation
Indices: 44964284--44964323 Score: 71
Period size: 7 Copynumber: 5.6 Consensus size: 7
44964274 AAATAAACTC
44964284 AAAATTT
1 AAAATTT
44964291 AAAAATTT
1 -AAAATTT
44964299 AAAATTT
1 AAAATTT
44964306 AAAATTT
1 AAAATTT
44964313 AAAATTT
1 AAAATTT
44964320 AAAA
1 AAAA
44964324 AAAAAATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 25 0.78
8 7 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:44964334 original size:8 final size:8
Alignment explanation
Indices: 44964323--44964358 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
44964313 AAAATTTAAA
44964323 AAAAAAAT
1 AAAAAAAT
44964331 AAAAAAAT
1 AAAAAAAT
44964339 -AAAAAAT
1 AAAAAAAT
44964346 AAAAAAAT
1 AAAAAAAT
44964354 AAAAA
1 AAAAA
44964359 TTTAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:44964365 original size:15 final size:15
Alignment explanation
Indices: 44964284--44964365 Score: 73
Period size: 15 Copynumber: 5.7 Consensus size: 15
44964274 AAATAAACTC
* *
44964284 AAAATTTAAAAATTT
1 AAAATTTAAAAAATA
* *
44964299 AAAATTT-AAAATTT
1 AAAATTTAAAAAATA
44964313 AAAATTT-AAAAA-A
1 AAAATTTAAAAAATA
*
44964326 AAAA-TAAAAAAATA
1 AAAATTTAAAAAATA
* *
44964340 AAAAATAAAAAAATA
1 AAAATTTAAAAAATA
44964355 AAAATTTAAAA
1 AAAATTTAAAA
44964366 TTTAATATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
12 1 0.02
13 9 0.15
14 23 0.39
15 26 0.44
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATTTAAAAAATA
Found at i:44964456 original size:19 final size:17
Alignment explanation
Indices: 44964434--44964473 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 17
44964424 TCCAAAAGAA
44964434 AAAAATAAAAAAATATGTT
1 AAAAATAAAAAAA-AT-TT
44964453 AAAAATAAAAAAAATTT
1 AAAAATAAAAAAAATTT
44964470 AAAA
1 AAAA
44964474 TTAATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.29
18 2 0.10
19 13 0.62
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAAATAAAAAAAATTT
Found at i:44968654 original size:43 final size:43
Alignment explanation
Indices: 44968592--44968729 Score: 231
Period size: 43 Copynumber: 3.2 Consensus size: 43
44968582 TATCATTATT
**
44968592 TTTAGCGGCGTTTATGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
44968635 TTTAGCAGCGTTTGCGAAAAAAGCGCCGCTGAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
44968678 TTTAGCGGCGTCTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
44968721 TTTAGCGGC
1 TTTAGCGGC
44968730 ATTTTTTTCA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:44969436 original size:22 final size:21
Alignment explanation
Indices: 44969404--44969444 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
44969394 ATGAAATTAT
44969404 CAAAAAAAAA-TTTAATTTTA
1 CAAAAAAAAATTTTAATTTTA
44969424 CAAAACAATAAATTTTAATTT
1 CAAAA-AA-AAATTTTAATTT
44969445 GAAAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 3 0.17
23 8 0.44
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
CAAAAAAAAATTTTAATTTTA
Found at i:44969695 original size:2 final size:2
Alignment explanation
Indices: 44969688--44969730 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
44969678 ATGACCAAGT
44969688 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
44969730 T
1 T
44969731 GGTATTGCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:44972938 original size:47 final size:45
Alignment explanation
Indices: 44972831--44973009 Score: 148
Period size: 47 Copynumber: 3.8 Consensus size: 45
44972821 GTGGGTAAAG
* *
44972831 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAACTATCATCT-
1 TGTCGATG-CATGTCCCAGACATAGTCTTACACTAGCTCTCATCTC
* *
44972876 TGTAGCTGATGCATGTCGCAGACAT-GTCTTACACTAGCTCTCGTCTC
1 TGT--C-GATGCATGTCCCAGACATAGTCTTACACTAGCTCTCATCTC
* * * * **
44972923 AATGTCGATGCCATGTCCCAGATATGGTCTTACACTGGCCCTCATAAC
1 --TGTCGATG-CATGTCCCAGACATAGTCTTACACTAGCTCTCATCTC
* *
44972971 GTGGCCGATGCATGTCCTAGACAT-GTCTTACACTAGCTC
1 -T-GTCGATGCATGTCCCAGACATAGTCTTACACTAGCTC
44973010 ACACACAAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.03
46 35 0.32
47 40 0.37
48 27 0.25
49 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (45 bp):
TGTCGATGCATGTCCCAGACATAGTCTTACACTAGCTCTCATCTC
Found at i:44972993 original size:94 final size:94
Alignment explanation
Indices: 44972831--44973009 Score: 243
Period size: 94 Copynumber: 1.9 Consensus size: 94
44972821 GTGGGTAAAG
* *** *
44972831 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAACTATCATCTTGTAGCTGATGCATGTCGCA
1 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAACCATCATAACGTAGCCGATGCATGTCGCA
44972896 GACATGTCTTACACTAGCTCTCGTCTCAA
66 GACATGTCTTACACTAGCTCTCGTCTCAA
* * ** * *
44972925 TGTCGATGCCATGTCCCAGATATGGTCTTACACTGGCCCTCATAACGTGGCCGATGCATGTC-CT
1 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAACCATCATAACGTAGCCGATGCATGTCGC-
44972989 AGACATGTCTTACACTAGCTC
65 AGACATGTCTTACACTAGCTC
44973010 ACACACAAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 72 0.99
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (94 bp):
TGTCGATGCCATGTCCCAGACATAGTCTTACACTAACCATCATAACGTAGCCGATGCATGTCGCA
GACATGTCTTACACTAGCTCTCGTCTCAA
Found at i:44978038 original size:21 final size:20
Alignment explanation
Indices: 44977990--44978039 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
44977980 TCTTCTTCCT
44977990 ATTTGAATAACCCACCGAAGC
1 ATTTG-ATAACCCACCGAAGC
*
44978011 ATTTGATCACCCTACCGAAGC
1 ATTTGATAACCC-ACCGAAGC
44978032 ATTTGATA
1 ATTTGATA
44978040 GGGTAGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (20 bp):
ATTTGATAACCCACCGAAGC
Found at i:44981516 original size:40 final size:40
Alignment explanation
Indices: 44981461--44981628 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
44981451 TGAATGATAC
* * *
44981461 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
44981501 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
44981541 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
44981581 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
44981621 CC-GGCTAA
1 CCGGGCTAA
44981629 ATTCCGAAGA
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.04
40 107 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Done.