Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 163 of 444
Found at i:44988866 original size:40 final size:40
Alignment explanation
Indices: 44988811--44988978 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
44988801 TGAATGATAC
* * *
44988811 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
44988851 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
44988891 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
44988931 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
44988971 CC-GGCTAA
1 CCGGGCTAA
44988979 ATTCCGAAGA
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.04
40 107 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:44991051 original size:46 final size:46
Alignment explanation
Indices: 44990975--44991197 Score: 199
Period size: 46 Copynumber: 4.8 Consensus size: 46
44990965 TGGGTAAAGT
* *
44990975 GCCGATGCCATGTCCCAGATATGGTCTTACACT-GACTATCATCTCGTA-
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAG-CT-TCATCTCGTAG
*
44991023 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTTACGTCTCG-AG
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTT-CATCTCGTAG
* *
44991069 GCCGATGCATGTCCTAGACATGTCTTACACTAGC-TCA-CGTCTTAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTTCATC-TCGT-AG
* * * *
44991115 GCCGATGCCATGTCCCACACATGGTCTTACACTGGCTCTCATAAT-GT-G
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCT-TCAT-CTCGTAG
* *
44991163 GTCGATGCATGTCCTAGACATTTCTTACACTAGCT
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCT
44991198 CACACACAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 3 0.02
46 72 0.49
47 37 0.25
48 25 0.17
50 4 0.03
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTAGCTTCATCTCGTAG
Found at i:44993408 original size:18 final size:18
Alignment explanation
Indices: 44993385--44993421 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
44993375 TTTTAAAGAT
44993385 ATATTTAATTGCTTAACA
1 ATATTTAATTGCTTAACA
44993403 ATATTTAATTGCTTAACA
1 ATATTTAATTGCTTAACA
44993421 A
1 A
44993422 GGACTTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (18 bp):
ATATTTAATTGCTTAACA
Found at i:44994779 original size:2 final size:2
Alignment explanation
Indices: 44994772--44994801 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
44994762 GTAAGTAATA
44994772 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44994802 TAAAAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44999714 original size:15 final size:15
Alignment explanation
Indices: 44999694--44999722 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
44999684 GTATTGTTGC
44999694 TTGATAACACAGTGA
1 TTGATAACACAGTGA
44999709 TTGATAACACAGTG
1 TTGATAACACAGTG
44999723 TCTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGATAACACAGTGA
Found at i:45001936 original size:23 final size:24
Alignment explanation
Indices: 45001869--45001938 Score: 61
Period size: 26 Copynumber: 2.8 Consensus size: 24
45001859 TGCAAATTTG
45001869 TACTTGTTTTAAATCTCTTCATATAT
1 TACTTGTTTTAAAT-T-TTCATATAT
* * *
45001895 TATTTATTTTGAACCATTTTTAT-TAT
1 TACTTGTTTT-AA--ATTTTCATATAT
45001921 TACTTGTTTTAAATTTTC
1 TACTTGTTTTAAATTTTC
45001939 TTCCATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
23 5 0.14
25 2 0.06
26 19 0.54
27 6 0.17
28 1 0.03
29 2 0.06
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.59
Consensus pattern (24 bp):
TACTTGTTTTAAATTTTCATATAT
Found at i:45001972 original size:54 final size:52
Alignment explanation
Indices: 45001869--45001972 Score: 133
Period size: 52 Copynumber: 2.0 Consensus size: 52
45001859 TGCAAATTTG
* *
45001869 TACTTGTTTTAAATCTCTTCATATATTATTTATTTTGAACCATTTTTATTAT
1 TACTTGTTTTAAATCTCTTCATATATTATTTACTTTGAACAATTTTTATTAT
* *
45001921 TACTTGTTTTAAATTTTCTTCCATATATTATTT-CTTT-AA-AATTTATATTAT
1 TACTTGTTTTAAA-TCTCTT-CATATATTATTTACTTTGAACAATTTTTATTAT
45001972 T
1 T
45001973 TCATGCCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
51 11 0.24
52 15 0.33
53 8 0.17
54 12 0.26
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.59
Consensus pattern (52 bp):
TACTTGTTTTAAATCTCTTCATATATTATTTACTTTGAACAATTTTTATTAT
Found at i:45002254 original size:14 final size:14
Alignment explanation
Indices: 45002209--45002262 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 14
45002199 ATTTCATTAT
*
45002209 TGTCATTATTATTA
1 TGTCATTATTTTTA
45002223 T-TC--TATTTTT-
1 TGTCATTATTTTTA
*
45002233 TGTTATTATTTTTA
1 TGTCATTATTTTTA
45002247 TGTCATTA-TTTTA
1 TGTCATTATTTTTA
45002260 TGT
1 TGT
45002263 TAGTTACTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
10 1 0.03
11 7 0.21
13 17 0.52
14 8 0.24
ACGTcount: A:0.20, C:0.06, G:0.07, T:0.67
Consensus pattern (14 bp):
TGTCATTATTTTTA
Found at i:45004861 original size:23 final size:23
Alignment explanation
Indices: 45004828--45004889 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
45004818 GGATAGCCAT
* *
45004828 ATATCGAGAAGTTCAAGTGAGCC
1 ATATCGAGAAGCTCAAGGGAGCC
* *
45004851 ATATCGTGAAGCTCTAGGGAGCC
1 ATATCGAGAAGCTCAAGGGAGCC
* *
45004874 ATTAACAAGAAGCTCA
1 A-TATCGAGAAGCTCA
45004890 CAAAGAGTCT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (23 bp):
ATATCGAGAAGCTCAAGGGAGCC
Found at i:45013014 original size:21 final size:21
Alignment explanation
Indices: 45012989--45013030 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45012979 TAAATTTAGC
*
45012989 TCAATTTAATAAAATTCATAT
1 TCAATTCAATAAAATTCATAT
**
45013010 TCAATTCAATTCAATTCATAT
1 TCAATTCAATAAAATTCATAT
45013031 CTTAGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTCAATAAAATTCATAT
Found at i:45013021 original size:10 final size:11
Alignment explanation
Indices: 45013001--45013030 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
45012991 AATTTAATAA
45013001 AATTCATATTC
1 AATTCATATTC
45013012 AATTCA-ATTC
1 AATTCATATTC
45013022 AATTCATAT
1 AATTCATAT
45013031 CTTAGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (11 bp):
AATTCATATTC
Found at i:45014503 original size:46 final size:48
Alignment explanation
Indices: 45014355--45014619 Score: 189
Period size: 47 Copynumber: 5.7 Consensus size: 48
45014345 TGCATGAGCC
* * * * *
45014355 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTAAGCT
* * ** * *
45014401 AGTATAAGACCATGTCTGGGACATGGCATTGGAATTGAGCCAAG--AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG--ATGTAAGCT
45014449 AGT-TAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCT
* * *
45014494 AGTGAAAGA-CATGCCTGGGACAT-GCATTGG-CTACGAGATG-ATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA-AGCT
* * * ** * *
45014539 CAGTGTAAGACCATGTTTGGGATATGGCATC-GACTTAAGATATGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCT
45014587 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
45014620 ACCTTACCCA
Statistics
Matches: 172, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
45 21 0.12
46 62 0.36
47 65 0.38
48 19 0.11
49 1 0.01
50 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCT
Found at i:45020543 original size:39 final size:39
Alignment explanation
Indices: 45020489--45020573 Score: 170
Period size: 39 Copynumber: 2.2 Consensus size: 39
45020479 GAAGAATGTT
45020489 TGTGAAATTGCAAGTACATTCGGCCTAGTACACATATGA
1 TGTGAAATTGCAAGTACATTCGGCCTAGTACACATATGA
45020528 TGTGAAATTGCAAGTACATTCGGCCTAGTACACATATGA
1 TGTGAAATTGCAAGTACATTCGGCCTAGTACACATATGA
45020567 TGTGAAA
1 TGTGAAA
45020574 ATCTTGCAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (39 bp):
TGTGAAATTGCAAGTACATTCGGCCTAGTACACATATGA
Found at i:45021210 original size:40 final size:40
Alignment explanation
Indices: 45021152--45021319 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
45021142 CAATTGAATG
* * *
45021152 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAATACCCGAAGGCAATTGTGCAAGTG-CTT
*
45021193 -TATCCGAGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAATACCCGAAGGCAATT-GTGCAAG-TGCTT
* *
45021232 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAATACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
45021272 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAATACCCGAAGGCAATT-GTGCAAGTGCTT
45021312 ATATCCGG
1 ATATCCGG
45021320 TTGTATTCTG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
39 8 0.07
40 96 0.89
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAATACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:45021290 original size:80 final size:79
Alignment explanation
Indices: 45021152--45021319 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
45021142 CAATTGAATG
* * *
45021152 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGAGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGAGCTAAGACCCGAAGGCA
*
45021217 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * *
45021232 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGAGCTAAGACCCGAAGGC
**
45021296 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
45021312 ATATCCGG
1 ATATCCGG
45021320 TTGTATTCTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 74 0.96
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGAGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:45025723 original size:49 final size:47
Alignment explanation
Indices: 45025663--45025835 Score: 174
Period size: 49 Copynumber: 3.6 Consensus size: 47
45025653 TGTTGTGTGT
45025663 CAGTGTAAGACCTGTCTGGGACATGGCATCGATACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGATACCGATA-ATGA-AGC
* * *
45025712 CAGTGTCAGACCTGTCTGGGACACGGCATCG--ACCTTGATATATGAATCC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGATACC--GATA-ATGAA-GC
* ** *
45025761 CAGTGTAAGACCTGTCTGGGACATGACATCGACT-TTGAT-ATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-TACCGATAATG-AAGC
45025808 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
45025836 GTTGGCATCT
Statistics
Matches: 104, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
47 19 0.18
48 16 0.15
49 69 0.66
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGATACCGATAATGAAGC
Found at i:45027716 original size:48 final size:48
Alignment explanation
Indices: 45027596--45027719 Score: 160
Period size: 48 Copynumber: 2.6 Consensus size: 48
45027586 AAGCTAACGC
* * * ** * *
45027596 CATGTCCCAGACAGGCCTTACACTAGCTTGTATGTTGCGAGGTCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATTGCGAGGCCAATG
*
45027644 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCT-CGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATAT-TGCGAGGCCAATG
45027692 CATGTCCCAGACATGTCTTACACTGGCT
1 CATGTCCCAGACATGTCTTACACTGGCT
45027720 CTCATGGTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 66 0.99
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATTGCGAGGCCAATG
Found at i:45027753 original size:45 final size:46
Alignment explanation
Indices: 45027641--45027760 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 46
45027631 TGCGAGGTCA
*
45027641 ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATAT--AGGCCG
* * *
45027689 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATGGTAT-GG-CT
1 ATGCATGTCCCAGACATGTCTTACACTGGCT-TAAAT-ATATAGGCCG
45027734 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
45027761 AGCACACATA
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
45 28 0.42
46 2 0.03
48 33 0.50
49 3 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATATAGGCCG
Found at i:45031450 original size:26 final size:22
Alignment explanation
Indices: 45031422--45031467 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
45031412 GTATACTTGG
45031422 ATTGATTTACCTGTTTGTAATT
1 ATTGATTTACCTGTTTGTAATT
45031444 ATTGATTTACCTGTTTGTAATT
1 ATTGATTTACCTGTTTGTAATT
45031466 AT
1 AT
45031468 ATGCATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (22 bp):
ATTGATTTACCTGTTTGTAATT
Found at i:45038274 original size:15 final size:15
Alignment explanation
Indices: 45038254--45038283 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45038244 ATAATCATAA
*
45038254 TAATTATCTTAATAT
1 TAATTATCCTAATAT
45038269 TAATTATCCTAATAT
1 TAATTATCCTAATAT
45038284 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:45040961 original size:23 final size:23
Alignment explanation
Indices: 45040904--45040966 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
45040894 GATTAAAAGC
*
45040904 TATTTACAAATCAAATC-TCTAA
1 TATTTACAAATCATATCTTCTAA
*
45040926 GA-TTACAAAATCATATCTTCTAA
1 TATTTAC-AAATCATATCTTCTAA
*
45040949 TATTTACATATCATATCT
1 TATTTACAAATCATATCT
45040967 AAGGTTGCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 4 0.12
22 10 0.29
23 16 0.47
24 4 0.12
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.40
Consensus pattern (23 bp):
TATTTACAAATCATATCTTCTAA
Found at i:45050390 original size:40 final size:40
Alignment explanation
Indices: 45050332--45050499 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
45050322 CAATTGAATG
* *
45050332 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
45050373 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * *
45050412 ATATCCGGGCTAATACGCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
45050452 ATATTCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
45050492 ATATCCGG
1 ATATCCGG
45050500 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
39 8 0.08
40 94 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:45050470 original size:80 final size:79
Alignment explanation
Indices: 45050332--45050499 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
45050322 CAATTGAATG
* * *
45050332 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
45050397 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * * *
45050412 ATATCCGGGCTAATACGCGAAGGCATTTGTGCGAGTCG-TTATATTCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
45050476 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
45050492 ATATCCGG
1 ATATCCGG
45050500 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:45055357 original size:25 final size:24
Alignment explanation
Indices: 45055302--45055359 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
45055292 ATATATATGT
*
45055302 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
45055326 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
45055352 ATATAATA
1 ATATAATA
45055360 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:45057000 original size:86 final size:86
Alignment explanation
Indices: 45056855--45057137 Score: 275
Period size: 86 Copynumber: 3.3 Consensus size: 86
45056845 TTTCAGCCTG
* * * * *
45056855 TTACCCTACTGCTTAAGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGGG-
1 TTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCATCTTCGATCTG-CTCCACTACTGCTTAGGGA
** * *
45056917 TTTTAGATCTGTATACTCAACCTA
64 GATAAGATCTGCA-ACTCAACCTA
* *
45056941 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * *
45057006 TAAGATCTGCAATTTAACCTG
66 TAAGATCTGCAACTCAACCTA
* * * * *
45057027 TTACCCTACTACTTAGGGGTTTAAGGTTCTTCTTCTTCGATCTACACCACTACTGCTTAGGGGGA
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * **** *
45057092 TAAGATCTACAATTTGGTCTG
66 TAAGATCTGCAACTCAACCTA
*
45057113 TTTCCCTACTGCTTAGGGGTTTAAG
1 TTACCCTACTGCTTAGGGGTTTAAG
45057138 ATCCTATGAA
Statistics
Matches: 168, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
85 5 0.03
86 154 0.92
87 9 0.05
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGCAACTCAACCTA
Found at i:45057536 original size:43 final size:42
Alignment explanation
Indices: 45057427--45057885 Score: 302
Period size: 43 Copynumber: 10.5 Consensus size: 42
45057417 CAGCCTATTA
** * * *
45057427 CCCTACTGCTTAGGGGGTTAAGGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTA-GGGGTTAA-GATCTTCATCTTCGATCTGTTT
45057471 CCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * *
45057514 CCCTACTGCCTAGGGAGATAAGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGATCTTCATCTTCGATCTGTTT
* * * * *
45057556 CCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
* * *
45057600 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGATCT-T-CATCTTCGA-TCTGTTT
* * * * * *
45057645 CCCTACTGCTCAGGGGGTTAA-AGCTTGTAAAT-TTGGCT-TGTTA
1 CCCTACTGCTTA-GGGGTTAAGATC-T-T-CATCTTCGATCTGTTT
* *
45057688 CCCTACTGCATAGGGGGTTAA-AGTCCATCATCTTCGATCTGTTT
1 CCCTACTGCTTA-GGGGTTAAGA-T-CTTCATCTTCGATCTGTTT
*
45057732 CCCTACTGCTTAAGGGGTTAAGATTTTCATCTTCGATCTGTTT
1 CCCTACTGCTT-AGGGGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * * *
45057775 CCCTACTGCTTAGAGAGATAGGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAG-GGGTTAAGATCTTCATCTTCGATCTGTTT
* * * * *
45057817 CCCTACCGATTAGGGGTTTAAGACCCTTTCGTCTTCGATTTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TC-TTCATCTTCGATCTGTTT
45057862 CCCTACTGCTTAGGGGATTAAGAT
1 CCCTACTGCTTAGGGG-TTAAGAT
45057886 TTGTAAATCT
Statistics
Matches: 323, Mismatches: 70, Indels: 44
0.74 0.16 0.10
Matches are distributed among these distances:
41 3 0.01
42 57 0.18
43 117 0.36
44 74 0.23
45 72 0.22
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
Found at i:45057674 original size:45 final size:43
Alignment explanation
Indices: 45057594--45057710 Score: 139
Period size: 45 Copynumber: 2.7 Consensus size: 43
45057584 CGTCTTTGAT
*
45057594 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGC-TAGGGGGTTAAAGATCTGTAAAT-TT-AGC
* *
45057639 CTGTTACCCTACTGCTCAGGGGGTTAAAGCT-TGTAAATTTGGC
1 CTGTTACCCTACTGCT-AGGGGGTTAAAGATCTGTAAATTTAGC
*
45057682 TTGTTACCCTACTGCATAGGGGGTTAAAG
1 CTGTTACCCTACTGC-TAGGGGGTTAAAG
45057711 TCCATCATCT
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
43 28 0.43
44 4 0.06
45 29 0.45
46 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (43 bp):
CTGTTACCCTACTGCTAGGGGGTTAAAGATCTGTAAATTTAGC
Found at i:45057864 original size:87 final size:85
Alignment explanation
Indices: 45057464--45057885 Score: 329
Period size: 87 Copynumber: 4.9 Consensus size: 85
45057454 TCTTCTTTGA
* * * * * *
45057464 TCTGTTTCCCTACTGCTTAGGAGG-TTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGG
1 TCTGTTACCCTACCGATTAGG-GGTTTAAGACCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
45057528 GAGATAAGATCTGCAATTCGG
65 GAGATAAGATCTGCAATTCGG
*
45057549 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGATCTGTTTCCCTACTGCTTAGG
1 TCTGTTACCCTACCGATTAGGGGTTTAAGA-CCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* * * *
45057614 GGGTTAAGATCTGTAAATCTTCAG
65 GAGATAAGATCTG-CAA--TTCGG
* * * * * * * * * * *
45057638 CCTGTTACCCTACTGCTCAGGGGGTTAA-AGCTT-GTAAATTTG-GCTTGTTACCCTACTGCATA
1 TCTGTTACCCTACCGATTAGGGGTTTAAGACCTTCGT--CTTCGATC-TGTTTCCCTACTGCTTA
* * * *
45057700 GGGGGTTAA-AGTCCAT-CATCTTCGA
63 GGGAGATAAGA-T-C-TGCA-ATTCGG
* * * ** * *
45057725 TCTGTTTCCCTACTGCTTAAGGGG-TTAAGATTTTCATCTTCGATCTGTTTCCCTACTGCTTAGA
1 TCTGTTACCCTACCGATT-AGGGGTTTAAGACCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
*
45057789 GAGATAGGATCTGCAATTCGG
65 GAGATAAGATCTGCAATTCGG
*
45057810 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTTCGTCTTCGATTTGTTTCCCTACTGCTTAG
1 TCTGTTACCCTACCGATTAGGGGTTTAAGA-CC-TTCGTCTTCGATCTGTTTCCCTACTGCTTAG
45057875 GG-GATTAAGAT
64 GGAGA-TAAGAT
45057886 TTGTAAATCT
Statistics
Matches: 264, Mismatches: 51, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
84 7 0.03
85 50 0.19
86 48 0.18
87 88 0.33
88 41 0.16
89 29 0.11
90 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (85 bp):
TCTGTTACCCTACCGATTAGGGGTTTAAGACCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
AGATAAGATCTGCAATTCGG
Found at i:45070590 original size:18 final size:18
Alignment explanation
Indices: 45070559--45070599 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
45070549 TATTAAGACT
*
45070559 AAAA-TAAAATAATGAGA-
1 AAAAGTAAAAAAATG-GAC
45070576 AAAAGTAAAAAAATGGAC
1 AAAAGTAAAAAAATGGAC
45070594 AAAAGT
1 AAAAGT
45070600 GAATTAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (18 bp):
AAAAGTAAAAAAATGGAC
Found at i:45074522 original size:27 final size:27
Alignment explanation
Indices: 45074482--45074545 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
45074472 GTGTGAAAAA
*
45074482 AATTTAATAATTTTTTTTGTTAATATT
1 AATTGAATAATTTTTTTTGTTAATATT
* *
45074509 AATTGAATACTTTTTTTTGTTAGTATT
1 AATTGAATAATTTTTTTTGTTAATATT
45074536 AATTGAATAA
1 AATTGAATAA
45074546 AAAATTGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (27 bp):
AATTGAATAATTTTTTTTGTTAATATT
Found at i:45074898 original size:12 final size:13
Alignment explanation
Indices: 45074875--45074900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45074865 CACTACTCCC
45074875 TTAAATTTTTTTT
1 TTAAATTTTTTTT
45074888 TTAAATTTTTTTT
1 TTAAATTTTTTTT
45074901 CCCATGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTAAATTTTTTTT
Found at i:45076015 original size:23 final size:23
Alignment explanation
Indices: 45075985--45076030 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45075975 TCGAATGCAA
45075985 GCAGTGGTACTACCCAGTTCGAG
1 GCAGTGGTACTACCCAGTTCGAG
45076008 GCAGTGGTACTACCCAGTTCGAG
1 GCAGTGGTACTACCCAGTTCGAG
45076031 ACATTCGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (23 bp):
GCAGTGGTACTACCCAGTTCGAG
Found at i:45076648 original size:39 final size:40
Alignment explanation
Indices: 45076584--45076689 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 40
45076574 AAAAAATAAT
* * * * **
45076584 AAATAAGATATGAACAGATATATTTTG-AAATGAGATTAA
1 AAATAAAATACGAACTGATAAATTTTGAAAAAAAGATTAA
*
45076623 AAATAAAATACGAGCTGATAAATTTTGAAAAAAAGATTAA
1 AAATAAAATACGAACTGATAAATTTTGAAAAAAAGATTAA
*
45076663 ATATAAAATACGAACTGATAAATTTTG
1 AAATAAAATACGAACTGATAAATTTTG
45076690 GAACAGTATT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 22 0.39
40 35 0.61
ACGTcount: A:0.53, C:0.05, G:0.13, T:0.29
Consensus pattern (40 bp):
AAATAAAATACGAACTGATAAATTTTGAAAAAAAGATTAA
Found at i:45079420 original size:18 final size:19
Alignment explanation
Indices: 45079394--45079446 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
45079384 TGTTAATAAA
*
45079394 TTAAAAAATATAAATTTAT
1 TTAAAAATTATAAATTTAT
45079413 TTAAAAATTATAAATTTAT
1 TTAAAAATTATAAATTTAT
* * *
45079432 TGAAATATTAAAAAT
1 TTAAAAATTATAAAT
45079447 ATGCCAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
TTAAAAATTATAAATTTAT
Found at i:45079778 original size:20 final size:19
Alignment explanation
Indices: 45079755--45079799 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
45079745 TATTAAAATA
*
45079755 TTATAAAATTTTAAAATTTT
1 TTATAAAA-ATTAAAATTTT
*
45079775 TTATGAAAAATTATAATTTT
1 TTAT-AAAAATTAAAATTTT
45079795 TTATA
1 TTATA
45079800 TTTGATCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 17 0.77
21 4 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TTATAAAAATTAAAATTTT
Found at i:45079830 original size:19 final size:20
Alignment explanation
Indices: 45079808--45079845 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45079798 TATTTGATCA
45079808 AATTTT-TAATAACTTTTAT
1 AATTTTCTAATAACTTTTAT
*
45079827 AATTTTCTAATAAGTTTTA
1 AATTTTCTAATAACTTTTA
45079846 AATATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTCTAATAACTTTTAT
Found at i:45079893 original size:43 final size:43
Alignment explanation
Indices: 45079841--45079922 Score: 98
Period size: 41 Copynumber: 1.9 Consensus size: 43
45079831 TTCTAATAAG
*
45079841 TTTTAAATATAATTTTTTTATAAAT-TTGTTTAAAT-TTTAAGATC
1 TTTTAAATAT--TTTTATTATAAATATT-TTTAAATGTTTAAGATC
*
45079885 TTTT-AATATTTTTATTATATATATTTTTAAATGTTTAA
1 TTTTAAATATTTTTATTATAAATATTTTTAAATGTTTAA
45079923 TATTTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
41 18 0.53
42 7 0.21
43 5 0.15
44 4 0.12
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (43 bp):
TTTTAAATATTTTTATTATAAATATTTTTAAATGTTTAAGATC
Found at i:45079930 original size:19 final size:19
Alignment explanation
Indices: 45079903--45079943 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
45079893 TTTTTATTAT
*
45079903 ATATATTTTTAAATGTTTA
1 ATATATTTTTAAATCTTTA
*
45079922 ATATTTTTTTAAATCTTTA
1 ATATATTTTTAAATCTTTA
45079941 ATA
1 ATA
45079944 ACTTTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
ATATATTTTTAAATCTTTA
Found at i:45079949 original size:19 final size:19
Alignment explanation
Indices: 45079908--45079949 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45079898 ATTATATATA
* **
45079908 TTTTTAAATGTTTAATATT
1 TTTTTAAATCTTTAATAAC
45079927 TTTTTAAATCTTTAATAAC
1 TTTTTAAATCTTTAATAAC
45079946 TTTT
1 TTTT
45079950 ATAATTGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTTAAATCTTTAATAAC
Found at i:45080626 original size:2 final size:2
Alignment explanation
Indices: 45080621--45080706 Score: 85
Period size: 2 Copynumber: 45.5 Consensus size: 2
45080611 TAAAATATTA
* *
45080621 AT AT AT AT AT AT AT AT AT AT -T A- AT AT -T TT A- AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
45080659 ACT AA AT AT -T TT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45080700 AT AT AT A
1 AT AT AT A
45080707 ATAAGACACC
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
1 6 0.08
2 63 0.89
3 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:45083128 original size:67 final size:67
Alignment explanation
Indices: 45083050--45083211 Score: 243
Period size: 67 Copynumber: 2.4 Consensus size: 67
45083040 CACCAGTATA
* * *
45083050 GTAATGCAGATAAACTATCAATATGTGCAAACAAGCTGCTAGTATTATGGACAAGCCACCAATAA
1 GTAATGCAGATAAACTACCAATATATGCAAACAAGCTGCTAGTATTATGGACAAGCCAACAATAA
45083115 TG
66 TG
* * * *
45083117 GTAATGTAGATAAACTGCCAATATATGCAAACAAGCTGCTAGTATTATGGACAAGCCAATAGTAA
1 GTAATGCAGATAAACTACCAATATATGCAAACAAGCTGCTAGTATTATGGACAAGCCAACAATAA
45083182 TG
66 TG
*
45083184 GTAATGCAGATAAACTGCCAATAGTATG
1 GTAATGCAGATAAACTACCAATA-TATG
45083212 GACCAGCCAC
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
67 82 0.95
68 4 0.05
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (67 bp):
GTAATGCAGATAAACTACCAATATATGCAAACAAGCTGCTAGTATTATGGACAAGCCAACAATAA
TG
Found at i:45085711 original size:40 final size:40
Alignment explanation
Indices: 45085626--45085776 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
45085616 AATTGAATGA
* * *
45085626 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
45085666 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
45085707 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
45085746 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45085777 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:45085790 original size:40 final size:40
Alignment explanation
Indices: 45085663--45085792 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
45085653 ATGCTGGAAA
* * * *
45085663 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
45085703 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
45085743 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
45085783 TTATATCCGG
1 TTATATCCGG
45085793 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:45093725 original size:40 final size:40
Alignment explanation
Indices: 45093640--45093790 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
45093630 AATTGAATGA
* * *
45093640 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
45093680 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
45093721 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
45093760 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45093791 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:45093804 original size:40 final size:40
Alignment explanation
Indices: 45093677--45093806 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
45093667 ATGCTGGAAA
* * * *
45093677 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
45093717 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
45093757 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
45093797 TTATATCCGG
1 TTATATCCGG
45093807 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:45102362 original size:23 final size:23
Alignment explanation
Indices: 45102332--45102378 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
45102322 ATTGTTTAAG
*
45102332 TTAAATGAACATGTTCGTAAACA
1 TTAAATGAACATGTTCGAAAACA
45102355 TTAAATGAACATGTTCGAAAACA
1 TTAAATGAACATGTTCGAAAACA
45102378 T
1 T
45102379 CTTCATAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.30
Consensus pattern (23 bp):
TTAAATGAACATGTTCGAAAACA
Found at i:45102502 original size:12 final size:12
Alignment explanation
Indices: 45102485--45102509 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45102475 TCAAATACAA
45102485 ATATTATAAATT
1 ATATTATAAATT
45102497 ATATTATAAATT
1 ATATTATAAATT
45102509 A
1 A
45102510 ATAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATTATAAATT
Found at i:45108454 original size:42 final size:43
Alignment explanation
Indices: 45108352--45108522 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
45108342 AACTCGTACA
* ** * * **
45108352 ATGCCAACGTCCCAGACGTGGTCTTACATATAATCGAATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACAAAATCTCATATCG
* *
45108395 ATGCCATTGTCCCAGACAGGGTCTTACACAAAAT-T-ATATACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACAAAATCTCATAT-CG
** * *
45108437 ATGCCAATGTCATAGACAAGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACAC-AAAATCTCATATCG
* * * *
45108481 TTGCCAATGTCCCAGACATGGTCTTACACGAAATCACATATC
1 ATGCCAATGTCCCAGACAAGGTCTTACACAAAATCTCATATC
45108523 AAAATCTTAT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 4 0.04
42 27 0.26
43 42 0.40
44 28 0.27
45 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACAAAATCTCATATCG
Found at i:45119593 original size:46 final size:48
Alignment explanation
Indices: 45119451--45119801 Score: 264
Period size: 46 Copynumber: 7.4 Consensus size: 48
45119441 TGTGCACTAG
* *
45119451 TGTAAGA-CATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCCAA
* * ** ** * *
45119497 TGTAAGACCATGTCTAGGACATGGCATCGGCATTAAGA-CAAGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCCAA
*
45119545 TGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAA
* *
45119591 TGTAAGA-CATGTCTGGGACATGCATCGG-CTACGGGATGT---GTCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCCAA
* * * * *
45119635 TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATCTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT-AGAGCCAA
* * * * * *
45119685 TGTAAGACCATGTTTTGGGACATGACATAGGCCTCGA-TTTTGATAGTCAA
1 TGTAAGACCATG-TCTGGGACATG-CATCGGCCTCGAGATGT-AGAGCCAA
* * *
45119735 TGTAAGACCATGTCTGGGACATGCCATC-GACT--TGATGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGATGTA-GAGCCAA
45119782 TGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
45119802 GGGGCATTAG
Statistics
Matches: 243, Mismatches: 45, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.04
45 16 0.07
46 71 0.29
47 54 0.22
48 25 0.10
49 14 0.06
50 36 0.15
51 17 0.07
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAA
Found at i:45119743 original size:100 final size:92
Alignment explanation
Indices: 45119545--45119765 Score: 250
Period size: 100 Copynumber: 2.3 Consensus size: 92
45119535 CAAGAGCTAG
* * * *
45119545 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTGGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATCTAAGCCAGTGTAAGACATGTCTGGG
*
45119608 ACATGCATCGGCTACGGGATGTGTCAA
66 ACATGCATAGGCTACGGGATGTGTCAA
*
45119635 TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATCTGAGAGCCAGTGTAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATCT-A-AGCCAGTGTAAGA-CATG-TC
***
45119700 TGGGACATGACATAGGCCT-CGATTTTGATAGTCAA
62 TGGGACATG-CATAGG-CTACG-GGATG-T-GTCAA
*
45119735 TGTAAGACCATGTCTGGGACATGCCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
45119766 TTGATGGATG
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
90 7 0.06
91 14 0.13
92 14 0.13
93 1 0.01
94 13 0.12
95 4 0.04
96 10 0.09
97 7 0.06
98 4 0.04
99 1 0.01
100 35 0.32
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (92 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATCTAAGCCAGTGTAAGACATGTCTGGG
ACATGCATAGGCTACGGGATGTGTCAA
Found at i:45123280 original size:2 final size:2
Alignment explanation
Indices: 45123261--45123305 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
45123251 ATCTAAATCA
* *
45123261 AT AT AC AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45123303 AT A
1 AT A
45123306 ACATAGCTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:45124923 original size:28 final size:28
Alignment explanation
Indices: 45124858--45124958 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45124848 ATAGTGAATC
*
45124858 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
45124887 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45124915 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45124945 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45124959 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45132699 original size:28 final size:28
Alignment explanation
Indices: 45132634--45132734 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45132624 ATAGTGAATC
*
45132634 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
45132663 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45132691 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45132721 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45132735 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45136004 original size:15 final size:15
Alignment explanation
Indices: 45135981--45136011 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45135971 TCAAAAATTC
45135981 CAATACAAAACATAT
1 CAATACAAAACATAT
*
45135996 CAATCCAAAACATAT
1 CAATACAAAACATAT
45136011 C
1 C
45136012 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:45140787 original size:7 final size:7
Alignment explanation
Indices: 45140774--45140810 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
45140764 ACACTACCTT
45140774 ATATCAC
1 ATATCAC
*
45140781 TTATCAC
1 ATATCAC
45140788 ATATCAC
1 ATATCAC
45140795 ATATCAC
1 ATATCAC
45140802 ATATCAC
1 ATATCAC
45140809 AT
1 AT
45140811 GTTGCTCGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATCAC
Found at i:45147803 original size:13 final size:14
Alignment explanation
Indices: 45147779--45147810 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
45147769 CAAACCTTAC
45147779 AACATACATGACAT
1 AACATACATGACAT
45147793 AACAT-CATGACAT
1 AACATACATGACAT
45147806 AACAT
1 AACAT
45147811 TATCAACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (14 bp):
AACATACATGACAT
Found at i:45150729 original size:23 final size:23
Alignment explanation
Indices: 45150703--45150754 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
45150693 CAAGTTACAC
45150703 GGCCAAATACCACATCAAACCCT
1 GGCCAAATACCACATCAAACCCT
*
45150726 GGCCAAATACCACATCAAAGCCT
1 GGCCAAATACCACATCAAACCCT
*
45150749 AGCCAA
1 GGCCAA
45150755 TTACAACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.40, C:0.37, G:0.12, T:0.12
Consensus pattern (23 bp):
GGCCAAATACCACATCAAACCCT
Found at i:45152885 original size:25 final size:25
Alignment explanation
Indices: 45152837--45152885 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
45152827 TTTGGGAAGC
* * *
45152837 CTTTGTGGTGAGTTGTCTATAAAGT
1 CTTTGTGGTGAATTATCTAGAAAGT
*
45152862 CTTTGTGGTGAATTATCTGGAAAG
1 CTTTGTGGTGAATTATCTAGAAAG
45152886 CACTTATGGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.29, T:0.41
Consensus pattern (25 bp):
CTTTGTGGTGAATTATCTAGAAAGT
Found at i:45157166 original size:23 final size:24
Alignment explanation
Indices: 45157136--45157185 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
45157126 AAACTAGTTG
*
45157136 CCATGTAGGTTGTGGAT-AAACCA
1 CCATGTAGGTTATGGATGAAACCA
*
45157159 CCATGTAGGTTATGGATGAATCCA
1 CCATGTAGGTTATGGATGAAACCA
45157183 CCA
1 CCA
45157186 ATATTTGCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (24 bp):
CCATGTAGGTTATGGATGAAACCA
Found at i:45161126 original size:46 final size:46
Alignment explanation
Indices: 45161076--45161251 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
45161066 TGGTTGAGCA
45161076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45161122 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45161167 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45161215 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45161252 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45161232 original size:93 final size:93
Alignment explanation
Indices: 45161073--45161243 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45161063 GGATGGTTGA
* *
45161073 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45161138 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45161166 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45161231 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45161244 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45163336 original size:46 final size:44
Alignment explanation
Indices: 45163248--45163423 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 44
45163238 GGGTAGGATA
*
45163248 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCGTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCTCGAAG
* *
45163294 TCGATGCATGTCCCAGACATGCCTTACACTGGCTTACATCTCGAAG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCTCGAAG
** * *
45163340 CCGATGCATGTCTTAGACATGTCTTACACTAGCTC-TCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATC-TC-GAA-G
* *
45163386 CCGGTGCCATGTCCCAGACATGGTCTTACACTAGCTCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA
45163424 CAATAACCTA
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 2 0.02
44 15 0.14
45 18 0.16
46 48 0.44
47 12 0.11
48 15 0.14
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCGAAG
Found at i:45166737 original size:46 final size:45
Alignment explanation
Indices: 45166679--45166896 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 45
45166669 ATTCGTGTGT
*
45166679 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGA-GA
* * *
45166725 GAGCCAGTGTAAGACCATGTCTAGGACATGACATC-GTCAT-TGAGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCATATGAGA
* * *
45166770 CGAGGGCTAGTGTAAAACATGTCTGAGACATGCATCAGCC-TCGA-GACGA
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ATGA-GA
* *
45166819 GGGCTAGTGTAAGACATGTCTGGAACATGCATCGGCC-TA-GAGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGAGA
* *
45166862 CGTAAGCTAGTGTAAGACATCTCTCGGACATGCAT
1 -G--AGCTAGTGTAAGACATGTCTGGGACATGCAT
45166897 TGGCTACGAG
Statistics
Matches: 141, Mismatches: 18, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
43 2 0.01
44 4 0.03
45 2 0.01
46 81 0.57
47 33 0.23
48 17 0.12
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGAGA
Found at i:45167980 original size:28 final size:28
Alignment explanation
Indices: 45167940--45167997 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
45167930 CACATAGGCT
*
45167940 AGGACACGGGCG-TGTCATGGCCGTGTGA
1 AGGACACGGGCGATGCCA-GGCCGTGTGA
45167968 AGGACACGGGCGTATGCCAGGCCGTGTGA
1 AGGACACGGGCG-ATGCCAGGCCGTGTGA
45167997 A
1 A
45167998 AACCCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.44
29 11 0.41
30 4 0.15
ACGTcount: A:0.21, C:0.22, G:0.41, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCGATGCCAGGCCGTGTGA
Found at i:45172382 original size:48 final size:48
Alignment explanation
Indices: 45172264--45172388 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 48
45172254 GTACGCATAA
** *
45172264 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACA-GTGACCAACCATCCGATACACGTAG
* * *
45172313 TAGCCTGCACTTAGTATTACAC-GTGACCTAACCATCTGATACATGTAG
1 TAGCCTGCACTTAGTACTACACAGTGACC-AACCATCCGATACACGTAG
45172361 TAGCCTGCACTTAGTACTACACACGTGA
1 TAGCCTGCACTTAGTACTACACA-GTGA
45172389 TCGAAGTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
47 6 0.09
48 35 0.53
49 21 0.32
50 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (48 bp):
TAGCCTGCACTTAGTACTACACAGTGACCAACCATCCGATACACGTAG
Found at i:45172433 original size:99 final size:98
Alignment explanation
Indices: 45172264--45172442 Score: 252
Period size: 99 Copynumber: 1.8 Consensus size: 98
45172254 GTACGCATAA
* * * *
45172264 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTA
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTAACCGGTACACATAGTAGCCTACACTTAGTA
*
45172329 -TTACACGTGACCTAACCATCTGATACATGTAG
66 CTAACACGTGACCTAACCATCTGATACATGTAG
* * *
45172361 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTACACTTAG
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTAACCGGTACACATAGTAGCCTACACTTAG
45172426 TACTACACACGTGACCT
64 TACTA-ACACGTGACCT
45172443 CACAATAGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
97 27 0.39
98 3 0.04
99 28 0.40
100 1 0.01
101 11 0.16
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTAACCGGTACACATAGTAGCCTACACTTAGTA
CTAACACGTGACCTAACCATCTGATACATGTAG
Found at i:45176399 original size:49 final size:49
Alignment explanation
Indices: 45176341--45176529 Score: 364
Period size: 49 Copynumber: 3.9 Consensus size: 49
45176331 GTATGAGATG
45176341 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
45176390 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
45176437 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
45176486 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
45176530 CATATGTGTG
Statistics
Matches: 138, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
47 47 0.34
49 91 0.66
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:45176503 original size:96 final size:96
Alignment explanation
Indices: 45176339--45176529 Score: 382
Period size: 96 Copynumber: 2.0 Consensus size: 96
45176329 ATGTATGAGA
45176339 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
45176404 GGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAG
45176435 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
45176500 GGCCTAATGGCCGATGTGATGAATGTGAAA
66 GGCCTAATGGCCGATGTGATGAATGTGAAA
45176530 CATATGTGTG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:45176583 original size:48 final size:48
Alignment explanation
Indices: 45176521--45176624 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
45176511 CGATGTGATG
45176521 AATGTGAAACATATGTGTGATATGTATATGTGGCAAAGCCGAATGCCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGCAAAGCCGAATGCCT
* * *
45176569 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGCAAAGCCGAATGCCT
45176617 AATGTGAA
1 AATGTGAA
45176625 TGTTGTAACA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.31
Consensus pattern (48 bp):
AATGTGAAACATATGTGTGATATGTATATGTGGCAAAGCCGAATGCCT
Found at i:45176718 original size:37 final size:37
Alignment explanation
Indices: 45176664--45176754 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
45176654 AACTTGGAAA
*
45176664 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
45176702 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
**
45176739 TATGTTTGGGTAAGAC
1 TATGTCCGGGTAAGAC
45176755 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:45180122 original size:21 final size:22
Alignment explanation
Indices: 45180096--45180136 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
45180086 TACTAGACAC
45180096 AGGGGC-ACACGCCCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
45180117 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
45180137 ACTGATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:45181359 original size:46 final size:47
Alignment explanation
Indices: 45181271--45181441 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 47
45181261 GGGGTAGGAT
* * *
45181271 GCCGATGCCATGTCCTAAACATGGTTTTACACTGGC-TCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGTA
*
45181317 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGTA
* * * * *
45181362 GGCTGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTCGTCTCAATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATCTC-GTA
*
45181410 -CCAATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
45181442 AGCTCACAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.12
45 14 0.13
46 53 0.51
47 14 0.13
48 11 0.11
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGTA
Found at i:45183205 original size:25 final size:26
Alignment explanation
Indices: 45183156--45183214 Score: 93
Period size: 25 Copynumber: 2.3 Consensus size: 26
45183146 CATTTTGACC
*
45183156 CACAGCTTGTGTGAGCAAACCCATTT
1 CACAGCTCGTGTGAGCAAACCCATTT
*
45183182 CACAGCTCGTGTG-GCAAACTCATTT
1 CACAGCTCGTGTGAGCAAACCCATTT
45183207 CACAGCTC
1 CACAGCTC
45183215 CTATGAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 19 0.61
26 12 0.39
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAACCCATTT
Found at i:45184653 original size:14 final size:14
Alignment explanation
Indices: 45184634--45184661 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45184624 TGGTTGAATA
45184634 GAAATTGGTCATTT
1 GAAATTGGTCATTT
45184648 GAAATTGGTCATTT
1 GAAATTGGTCATTT
45184662 TATGCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
GAAATTGGTCATTT
Found at i:45188164 original size:19 final size:19
Alignment explanation
Indices: 45188140--45188178 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
45188130 GAGAGCATGT
45188140 TGTGCTACTTTTCACTCTA
1 TGTGCTACTTTTCACTCTA
*
45188159 TGTGCTACTTTTTACTCTA
1 TGTGCTACTTTTCACTCTA
45188178 T
1 T
45188179 CTTTTCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.23, G:0.10, T:0.51
Consensus pattern (19 bp):
TGTGCTACTTTTCACTCTA
Found at i:45190599 original size:30 final size:30
Alignment explanation
Indices: 45190565--45190627 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
45190555 ACTTAATAAG
45190565 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
45190595 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
45190625 CAA
1 CAA
45190628 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:45193287 original size:49 final size:49
Alignment explanation
Indices: 45193231--45193462 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
45193221 CTGGTAGGCA
* *
45193231 TAGTAGCCTGCACTTAGTACTATACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * * ** ** * *
45193280 TAGTAGCCTACACTTTGTACTACACAAGTGACCTAACCATTTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
45193330 TAGTAGCCTGCACTTACTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* *
45193381 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
45193430 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
45193463 TCACAATAGA
Statistics
Matches: 148, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 71 0.48
50 42 0.28
51 35 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:45197583 original size:18 final size:18
Alignment explanation
Indices: 45197560--45197595 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
45197550 TTCTAAAATT
45197560 TTATAAAAGT-CATAAAAA
1 TTATAAAA-TACATAAAAA
45197578 TTATAAAATACATAAAAA
1 TTATAAAATACATAAAAA
45197596 ACGCCCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (18 bp):
TTATAAAATACATAAAAA
Found at i:45197838 original size:21 final size:21
Alignment explanation
Indices: 45197813--45197899 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 21
45197803 CTTCATAAAA
*
45197813 TTTTATAAATTTTTTTATGAT
1 TTTTATAAATTTTTATATGAT
* * *
45197834 TTTTAT-AATTTTTTTCTAAT
1 TTTTATAAATTTTTATATGAT
* *
45197854 TTTT-TCTAATTTGTATAT--T
1 TTTTAT-AAATTTTTATATGAT
45197873 TTTTATTAAATTTTTAT-TGAT
1 TTTTA-TAAATTTTTATATGAT
45197894 TTTTAT
1 TTTTAT
45197900 TTTTATTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
19 7 0.13
20 25 0.47
21 21 0.40
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (21 bp):
TTTTATAAATTTTTATATGAT
Found at i:45197857 original size:30 final size:29
Alignment explanation
Indices: 45197813--45197909 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 29
45197803 CTTCATAAAA
*
45197813 TTTTATAAATTTTTTTATGATTTTTATAATT
1 TTTTATTAA-TTTTTTATGATTTTTAT-ATT
* * *
45197844 TTTT-TCTAATTTTTTCTAATTTGTATATT
1 TTTTAT-TAATTTTTTATGATTTTTATATT
*
45197873 TTTTATTAAATTTTTATTGATTTTTAT-TT
1 TTTTATTAATTTTTTA-TGATTTTTATATT
45197902 TTATTATT
1 TT-TTATT
45197910 TTTTTTCACA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
29 19 0.35
30 29 0.54
31 6 0.11
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (29 bp):
TTTTATTAATTTTTTATGATTTTTATATT
Found at i:45197888 original size:11 final size:10
Alignment explanation
Indices: 45197813--45197900 Score: 58
Period size: 11 Copynumber: 8.7 Consensus size: 10
45197803 CTTCATAAAA
*
45197813 TTTTATAAAT
1 TTTTATTAAT
45197823 TTTT-TTATGAT
1 TTTTATTA--AT
45197834 TTTTA-TAAT
1 TTTTATTAAT
*
45197843 TTTTTTCTAAT
1 TTTTAT-TAAT
45197854 TTTT-TCTAAT
1 TTTTAT-TAAT
* *
45197864 TTGTA-TATT
1 TTTTATTAAT
45197873 TTTTATTAAAT
1 TTTTATT-AAT
*
45197884 TTTTATTGAT
1 TTTTATTAAT
45197894 TTTTATT
1 TTTTATT
45197901 TTTATTATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
9 15 0.24
10 23 0.37
11 25 0.40
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:45197913 original size:16 final size:16
Alignment explanation
Indices: 45197882--45197912 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45197872 TTTTTATTAA
45197882 ATTTTTATTGATTTTT
1 ATTTTTATTGATTTTT
45197898 ATTTTTATT-ATTTTT
1 ATTTTTATTGATTTTT
45197913 TTTCACATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
ATTTTTATTGATTTTT
Found at i:45197947 original size:10 final size:10
Alignment explanation
Indices: 45197932--45197960 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
45197922 TCACGCCATT
45197932 GTTGTGGCTC
1 GTTGTGGCTC
45197942 GTTGTGGCTC
1 GTTGTGGCTC
45197952 GTTGTGGCT
1 GTTGTGGCT
45197961 TTAACAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.17, G:0.41, T:0.41
Consensus pattern (10 bp):
GTTGTGGCTC
Found at i:45198461 original size:19 final size:18
Alignment explanation
Indices: 45198430--45198474 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
45198420 TTATGATTTT
* *
45198430 TTTTATATTTTATCAGTA
1 TTTTATATATTATCAATA
*
45198448 TTTTATATAATTATGAATA
1 TTTTATAT-ATTATCAATA
45198467 TTTTATAT
1 TTTTATAT
45198475 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTATATATTATCAATA
Found at i:45198489 original size:32 final size:34
Alignment explanation
Indices: 45198449--45198516 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
45198439 TTATCAGTAT
45198449 TTTATATAA-TTATGAATATTT-TATATTTA-AAA
1 TTTATATAACTTATGAAT-TTTATATATTTATAAA
*
45198481 TTTATATAATCTTATTAATTTTATATATTTATAAA
1 TTTATATAA-CTTATGAATTTTATATATTTATAAA
45198516 T
1 T
45198517 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 9 0.29
33 3 0.10
34 15 0.48
35 4 0.13
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTATATAACTTATGAATTTTATATATTTATAAA
Found at i:45198520 original size:19 final size:19
Alignment explanation
Indices: 45198430--45198532 Score: 69
Period size: 17 Copynumber: 5.8 Consensus size: 19
45198420 TTATGATTTT
* *
45198430 TTTTATAT-TTTATCAGTA
1 TTTTATATATTTATAAATA
* *
45198448 TTTTATATAATTATGAATA
1 TTTTATATATTTATAAATA
45198467 -TTT-TATATTTA-AAAT-
1 TTTTATATATTTATAAATA
* *
45198482 TTATATA-ATCTTAT-TA-A
1 TTTTATATAT-TTATAAATA
45198499 TTTTATATATTTATAAATA
1 TTTTATATATTTATAAATA
* *
45198518 TTTTTTTTATTTATA
1 TTTTATATATTTATA
45198533 TAAAAATATT
Statistics
Matches: 65, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
16 7 0.11
17 23 0.35
18 14 0.22
19 21 0.32
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTATATATTTATAAATA
Found at i:45198523 original size:21 final size:21
Alignment explanation
Indices: 45198499--45198569 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
45198489 ATCTTATTAA
45198499 TTTTATATATTTATAAATATT
1 TTTTATATATTTATAAATATT
*
45198520 TTTTTTAT-TTATATAAAAATATT
1 TTTTATATATT-TAT--AAATATT
* *
45198543 CTTTT-GATATTTGTAAATATT
1 -TTTTATATATTTATAAATATT
*
45198564 TGTTAT
1 TTTTAT
45198570 GAACTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
20 5 0.13
21 17 0.44
23 11 0.28
24 6 0.15
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (21 bp):
TTTTATATATTTATAAATATT
Found at i:45198525 original size:23 final size:24
Alignment explanation
Indices: 45198446--45198542 Score: 81
Period size: 23 Copynumber: 4.0 Consensus size: 24
45198436 ATTTTATCAG
* *
45198446 TATTTTATATAATTATGAATATTT
1 TATTTTATATATTTATAAATATTT
* *
45198470 TATATTTA-AAATTTATATAATCTTAT
1 TAT-TTTATATATTTATA-AATATT-T
45198496 TAATTTTATATATTTATAAATATTT
1 T-ATTTTATATATTTATAAATATTT
* * *
45198521 T-TTTTATTTATATAAAAATATT
1 TATTTTATATATTTATAAATATT
45198543 CTTTTGATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
23 18 0.31
24 9 0.15
25 11 0.19
26 11 0.19
27 10 0.17
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (24 bp):
TATTTTATATATTTATAAATATTT
Found at i:45198547 original size:23 final size:23
Alignment explanation
Indices: 45198499--45198552 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
45198489 ATCTTATTAA
* * *
45198499 TTTTATATATTTATAAATATTTT
1 TTTTATATATATAAAAATATTCT
*
45198522 TTTTATTTATATAAAAATATTCT
1 TTTTATATATATAAAAATATTCT
*
45198545 TTTGATAT
1 TTTTATAT
45198553 TTGTAAATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTATATATATAAAAATATTCT
Found at i:45199488 original size:24 final size:23
Alignment explanation
Indices: 45199453--45199504 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
45199443 TTACTGATTG
45199453 ATTTTATGTATTTTAATTTGGTTA
1 ATTTTATGTATTTT-ATTTGGTTA
**
45199477 ATTTTA-GTTATTTTATTTTTTTA
1 ATTTTATG-TATTTTATTTGGTTA
45199500 ATTTT
1 ATTTT
45199505 CAAATTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (23 bp):
ATTTTATGTATTTTATTTGGTTA
Found at i:45199645 original size:31 final size:30
Alignment explanation
Indices: 45199586--45199654 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
45199576 AGACATGAAT
*
45199586 TTTAATTTGGTGCAAGTATATACCTGAAAC
1 TTTAATTTGGTGCAAATATATACCTGAAAC
* * *
45199616 TTTAATTGTGGTTCAAATATATACTTGAAAT
1 TTTAATT-TGGTGCAAATATATACCTGAAAC
45199647 TTTAATTT
1 TTTAATTT
45199655 TGATTTAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 8 0.24
31 26 0.76
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (30 bp):
TTTAATTTGGTGCAAATATATACCTGAAAC
Found at i:45201344 original size:44 final size:44
Alignment explanation
Indices: 45201280--45201374 Score: 129
Period size: 44 Copynumber: 2.2 Consensus size: 44
45201270 TAGTGTATTC
* *
45201280 TTTGA-TTCAGTATGTAAACATGTAATAACTGGTGAAGCCAATG
1 TTTGAGTTCAGTATGTAAACATGTAAGAACTGGTGAAGCCAATA
* * * *
45201323 TTTGAGTTCTGTATTTAAACATGTAAGACCTGGTGAAGGCAATA
1 TTTGAGTTCAGTATGTAAACATGTAAGAACTGGTGAAGCCAATA
45201367 TTTGAGTT
1 TTTGAGTT
45201375 GAGAGAGACT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 5 0.11
44 40 0.89
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.36
Consensus pattern (44 bp):
TTTGAGTTCAGTATGTAAACATGTAAGAACTGGTGAAGCCAATA
Found at i:45203272 original size:17 final size:17
Alignment explanation
Indices: 45203238--45203272 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45203228 GTAAATTAGA
*
45203238 TAATTGATATTTTAATT
1 TAATTGATATTATAATT
*
45203255 TAATTGATATTATGATT
1 TAATTGATATTATAATT
45203272 T
1 T
45203273 GATGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (17 bp):
TAATTGATATTATAATT
Found at i:45204394 original size:32 final size:32
Alignment explanation
Indices: 45204358--45204454 Score: 97
Period size: 32 Copynumber: 3.3 Consensus size: 32
45204348 AGTTATTTCT
45204358 TGCAATAATTTGATATACTTTTTATTCTTTAC
1 TGCAATAATTTGATATACTTTTTATTCTTTAC
* *
45204390 TGCAATAA-TT--T-TA-GTTAT-TTC-TT-C
1 TGCAATAATTTGATATACTTTTTATTCTTTAC
*
45204414 --CAATAATTTGATATACTTTTTATTCTTTAT
1 TGCAATAATTTGATATACTTTTTATTCTTTAC
45204444 TGCAATAATTT
1 TGCAATAATTT
45204455 TAGTTATAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 20
0.67 0.07 0.27
Matches are distributed among these distances:
22 6 0.12
23 2 0.04
24 1 0.02
25 3 0.06
26 5 0.10
27 6 0.12
28 5 0.10
29 3 0.06
31 2 0.04
32 17 0.34
ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54
Consensus pattern (32 bp):
TGCAATAATTTGATATACTTTTTATTCTTTAC
Found at i:45204423 original size:54 final size:54
Alignment explanation
Indices: 45204341--45204461 Score: 224
Period size: 54 Copynumber: 2.2 Consensus size: 54
45204331 AAAGTCAACT
*
45204341 TAATTTTAGTTATTTCTTGCAATAATTTGATATACTTTTTATTCTTTACTGCAA
1 TAATTTTAGTTATTTCTTCCAATAATTTGATATACTTTTTATTCTTTACTGCAA
*
45204395 TAATTTTAGTTATTTCTTCCAATAATTTGATATACTTTTTATTCTTTATTGCAA
1 TAATTTTAGTTATTTCTTCCAATAATTTGATATACTTTTTATTCTTTACTGCAA
45204449 TAATTTTAGTTAT
1 TAATTTTAGTTAT
45204462 AAAACTGAGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (54 bp):
TAATTTTAGTTATTTCTTCCAATAATTTGATATACTTTTTATTCTTTACTGCAA
Found at i:45210826 original size:673 final size:673
Alignment explanation
Indices: 45209540--45211562 Score: 3965
Period size: 673 Copynumber: 3.0 Consensus size: 673
45209530 TCTATGATGG
*
45209540 GTTACTTCCAATGGAAATGAAAATAATAGATGTTGCAAGTGGTGGGGCACTTGTTAATATGACAT
1 GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
*
45209605 CTCAAAAAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
66 CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
45209670 GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
131 GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
45209735 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
196 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
45209800 AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
261 AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
45209865 GTTGGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
326 GTTGGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
45209930 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
391 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
45209995 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
456 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
45210060 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
521 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
45210125 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
586 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
45210190 CTAATCCTTAACATAATGCAAGT
651 CTAATCCTTAACATAATGCAAGT
45210213 GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
1 GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
45210278 CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
66 CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
45210343 GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
131 GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
45210408 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
196 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
45210473 AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
261 AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
*
45210538 GTTGGGAACTTTCTAAGACCACCACAAAGGTGAAATGACCCCTACTCAAACTCATATAATGTTGG
326 GTTGGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
45210603 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
391 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
45210668 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
456 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
45210733 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
521 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
45210798 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
586 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
45210863 CTAATCCTTAACATAATGCAAGT
651 CTAATCCTTAACATAATGCAAGT
45210886 GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
1 GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
*
45210951 CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAGTTCTGATTGGCTGCA
66 CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
*
45211016 GAACCTATGAGACGGGTTCAAAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
131 GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
45211081 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
196 TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
* * *
45211146 AGCCAAACCACCCGATGAACTCATGTCCAATTTTACATGAGGGTTCGACAGAACAAGCAAATTTT
261 AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
*
45211211 GTTAGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
326 GTTGGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
45211276 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
391 GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
45211341 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
456 GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
45211406 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
521 CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
45211471 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
586 GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
45211536 CTAATCCTTAACATAATGCAAGT
651 CTAATCCTTAACATAATGCAAGT
45211559 GTTA
1 GTTA
45211563 TGGCATTGAG
Statistics
Matches: 1340, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
673 1340 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (673 bp):
GTTACTTCCAATGGAAATGAAAATAATAGATGCTGCAAGTGGTGGGGCACTTGTTAATATGACAT
CTCAAAGAGTGAGAGAGTTGATTTCCACCATGGCTGCTAACTCTTAGCAATTCTGATTGGCTGCA
GAACCTATGAGACGGGTTCACAAGTTAAGTTCTCTATATTTTGAAGAAAAAATTGATAAGCTGAC
TAACATTTTTCAATATTTGCTTATAGATAAAATGGGCCCAGTACGGTTGTGAGAAATTTGCGTAA
AGCCAGACCACCCGATGAACTCATGTCCAATTTTACATGAGGATTCGACAGAACAAGCAAATGTT
GTTGGGAACTTTCTAAGACCACCACAAAGGCGAAATGACCCCTACTCAAACTCATATAATGTTGG
GTGGAAAGATCAACCAAATCCAAGTTATAGGTCGAATCCTCGATTCAATCAACCTTACCAACAAA
GGTTGCCTCTGAATCAACAATTACCACCTCAAAGTCATCTTTGGAAGCCATTGAGGAAATGCGAC
CCAATAGTATTGAGAAGTTTCAGAAAAAAATTTGACATTCATTTGCAGGAGTTAGATAAGCAAGT
GAGCAAGCTTGCACTCACGGTTAGCCATTTGAAGTCTCAAGGTAAGCTGTCGTCCTAAACTAAAC
CTAATCCTTAACATAATGCAAGT
Found at i:45215410 original size:35 final size:34
Alignment explanation
Indices: 45215360--45215508 Score: 120
Period size: 35 Copynumber: 4.3 Consensus size: 34
45215350 CATAGGTAAG
*
45215360 TACATGTAAGCTTATATTGAACTTGTATATTTGGC
1 TACATGTGAGCTTATATTGAA-TTGTATATTTGGC
* * * * **
45215395 TGCATGTGAGGTTATATTGAATTTTAGTATTCGAT
1 TACATGTGAGCTTATATTGAATTGTA-TATTTGGC
* *
45215430 TACATGTGAGCTTATATTGAACTTGTATACTTGGT
1 TACATGTGAGCTTATATTGAA-TTGTATATTTGGC
* * *
45215465 TATATGTGAAG-TTATCTTGAATGTGCATATTTGGC
1 TACATGTG-AGCTTATATTGAAT-TGTATATTTGGC
* *
45215500 CATATGTGA
1 TACATGTGA
45215509 TGTTCTTTTG
Statistics
Matches: 91, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
34 6 0.07
35 79 0.87
36 6 0.07
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (34 bp):
TACATGTGAGCTTATATTGAATTGTATATTTGGC
Found at i:45229318 original size:28 final size:28
Alignment explanation
Indices: 45229278--45229334 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
45229268 GTAAAGGGCA
45229278 TTACTTTGAGCATGTTTAAGCGAGTTTT
1 TTACTTTGAGCATGTTTAAGCGAGTTTT
45229306 TTACTTTGAGCATGTTTAAGCGAGTTTT
1 TTACTTTGAGCATGTTTAAGCGAGTTTT
45229334 T
1 T
45229335 CTTACAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (28 bp):
TTACTTTGAGCATGTTTAAGCGAGTTTT
Found at i:45233416 original size:26 final size:26
Alignment explanation
Indices: 45233387--45233437 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45233377 AAATCAAATA
45233387 GTTTAAAATAAATAATATATAAAAGG
1 GTTTAAAATAAATAATATATAAAAGG
* * *
45233413 GTTTGAGATAAATAATATGTAAAAG
1 GTTTAAAATAAATAATATATAAAAG
45233438 AAATATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (26 bp):
GTTTAAAATAAATAATATATAAAAGG
Found at i:45233792 original size:2 final size:2
Alignment explanation
Indices: 45233785--45233819 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
45233775 TCAATTAAAT
*
45233785 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45233820 TAATGTGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:45235789 original size:39 final size:39
Alignment explanation
Indices: 45235735--45235888 Score: 218
Period size: 39 Copynumber: 3.9 Consensus size: 39
45235725 CACGATAATA
* * ** * * * *
45235735 AGCCACCCCAACACCCTGGACCTAGTGGTAGGGGGGATG
1 AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGAGG
*
45235774 AGCCACCACATCACCCCGGACCTGGTGGTAGAGGAGAGG
1 AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGAGG
45235813 AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGAGG
1 AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGAGG
*
45235852 AGCCACCACATCACCCCAGACCTGGTGGTAGGGGAGA
1 AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGA
45235889 TGGGGGTGAC
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.26, C:0.31, G:0.32, T:0.11
Consensus pattern (39 bp):
AGCCACCACATCACCCCAGACCTGGTGGTAGAGGAGAGG
Found at i:45235939 original size:65 final size:65
Alignment explanation
Indices: 45235831--45235953 Score: 203
Period size: 65 Copynumber: 1.9 Consensus size: 65
45235821 CATCACCCCA
*
45235831 GACCTGGTGGTAGAGGAGAGGAGCCACCACATCACCCCAGACCTGGTGGTAGGGGAGATGGGGGT
1 GACCTGGTGGTAGAGGAGAGGAGCCACCACACCACCCCAGACCTGGTGGTAGGGGAGATGGGGGT
* *
45235896 GACCTGGTGGTAGCGGAGATGAGCCACCACACCA-CCCAGGACCTGGTGGTAGGGGAGA
1 GACCTGGTGGTAGAGGAGAGGAGCCACCACACCACCCCA-GACCTGGTGGTAGGGGAGA
45235954 GGAACTACCA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 4 0.07
65 50 0.93
ACGTcount: A:0.24, C:0.24, G:0.40, T:0.13
Consensus pattern (65 bp):
GACCTGGTGGTAGAGGAGAGGAGCCACCACACCACCCCAGACCTGGTGGTAGGGGAGATGGGGGT
Found at i:45239892 original size:38 final size:38
Alignment explanation
Indices: 45239815--45239950 Score: 157
Period size: 38 Copynumber: 3.5 Consensus size: 38
45239805 GAACCTAGTC
* * * *
45239815 ACCAGCACAAAACCTGTGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* *
45239855 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
* *
45239893 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATATT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
*
45239931 TCCAGCA-TATAGCCTGCGGG
1 ACCAGCACTA-AGCCTGCGGG
45239951 TCTTTAAGCC
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 60 0.72
39 5 0.06
40 17 0.20
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:45247629 original size:38 final size:38
Alignment explanation
Indices: 45247559--45247707 Score: 156
Period size: 38 Copynumber: 3.9 Consensus size: 38
45247549 CAGCACAAAA
* * *
45247559 CCTGCGGGACTTTAAGCTCAGATACAATACCAGCACTAGG
1 CCTGCGAGA-TTTAA-CTCGGATATAATACCAGCACTAGG
*
45247599 CCCGCGAGATTTAACTCGGATATAATACCAGCACTAGG
1 CCTGCGAGATTTAACTCGGATATAATACCAGCACTAGG
* * * *
45247637 CCTGC-AGGATTTAACCCGAATATAATACCAGCACGAAG
1 CCTGCGA-GATTTAACTCGGATATAATACCAGCACTAGG
* * * *
45247675 CCTGCGGGATTTAACACGGATATATTTCCAGCA
1 CCTGCGAGATTTAACTCGGATATAATACCAGCA
45247708 TATAGCCTGT
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 80 0.86
39 5 0.05
40 7 0.08
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
CCTGCGAGATTTAACTCGGATATAATACCAGCACTAGG
Found at i:45247715 original size:38 final size:38
Alignment explanation
Indices: 45247547--45247716 Score: 146
Period size: 38 Copynumber: 4.4 Consensus size: 38
45247537 GAATCCAGTC
* * * * * *
45247547 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATACAAT
1 ACCAGCACTAAGCCTGCAGGA-TTTAA-CACGGATATAAT
* * *
45247587 ACCAGCACTAGGCCCGC-GAGATTTAACTCGGATATAAT
1 ACCAGCACTAAGCCTGCAG-GATTTAACACGGATATAAT
* * *
45247625 ACCAGCACTAGGCCTGCAGGATTTAACCCGAATATAAT
1 ACCAGCACTAAGCCTGCAGGATTTAACACGGATATAAT
* * *
45247663 ACCAGCACGAAGCCTGCGGGATTTAACACGGATATATT
1 ACCAGCACTAAGCCTGCAGGATTTAACACGGATATAAT
*
45247701 TCCAGCA-TATAGCCTG
1 ACCAGCACTA-AGCCTG
45247717 TGGGTCTTTA
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
37 1 0.01
38 87 0.79
39 7 0.06
40 15 0.14
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCAGGATTTAACACGGATATAAT
Found at i:45252866 original size:15 final size:17
Alignment explanation
Indices: 45252837--45252884 Score: 96
Period size: 17 Copynumber: 2.8 Consensus size: 17
45252827 AGGAAAGATT
45252837 TTTACAAAGAGAGAGTG
1 TTTACAAAGAGAGAGTG
45252854 TTTACAAAGAGAGAGTG
1 TTTACAAAGAGAGAGTG
45252871 TTTACAAAGAGAGA
1 TTTACAAAGAGAGA
45252885 ATACTGAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.44, C:0.06, G:0.27, T:0.23
Consensus pattern (17 bp):
TTTACAAAGAGAGAGTG
Found at i:45253527 original size:19 final size:19
Alignment explanation
Indices: 45253503--45253541 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
45253493 TACGGCAATG
45253503 AAGGAACAAAGATGAACCA
1 AAGGAACAAAGATGAACCA
45253522 AAGGAACAAAGATGAACCA
1 AAGGAACAAAGATGAACCA
45253541 A
1 A
45253542 CTTTGGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.21, T:0.05
Consensus pattern (19 bp):
AAGGAACAAAGATGAACCA
Found at i:45257834 original size:39 final size:39
Alignment explanation
Indices: 45257789--45258026 Score: 388
Period size: 39 Copynumber: 6.1 Consensus size: 39
45257779 AAGCAAGACA
45257789 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
45257828 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
45257867 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
**
45257906 CTGGAAATGTATCCGGGCTAAAGACCCATAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
45257945 CTGGAAATGTA-CTCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATC-CGGGCTAAAGACCCGCAGGCTTCGTG
* * * * *
45257984 CTGGAAATGTATCCGAGATAAAGTCCCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
45258023 CTGG
1 CTGG
45258027 TAATATAATT
Statistics
Matches: 188, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 186 0.99
40 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:45263126 original size:39 final size:39
Alignment explanation
Indices: 45263081--45263310 Score: 397
Period size: 39 Copynumber: 5.9 Consensus size: 39
45263071 AAGCAAGACA
45263081 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
45263120 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
45263159 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
45263198 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
45263237 CTGGAAATGTATCCGGGTTAAAGAACCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
** *
45263276 CTGGAAATGTATCCGACCTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTT
45263311 TGTACTGGTA
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 180 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:45265688 original size:40 final size:40
Alignment explanation
Indices: 45265644--45265721 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
45265634 GCCATATATA
* * *
45265644 TATATAGCCGAAGCTATTTCGATTCACACACTATGTGCTT
1 TATATAGCCGAAGCTATCTCGATACACACACTAAGTGCTT
*
45265684 TATATAGCCGAAGCTATCTCGATACGCACACTAAGTGC
1 TATATAGCCGAAGCTATCTCGATACACACACTAAGTGC
45265722 CAAACATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (40 bp):
TATATAGCCGAAGCTATCTCGATACACACACTAAGTGCTT
Found at i:45270470 original size:40 final size:40
Alignment explanation
Indices: 45270391--45270575 Score: 155
Period size: 40 Copynumber: 4.6 Consensus size: 40
45270381 TTCGAATGAT
* * * *
45270391 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
45270431 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
45270471 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
45270511 ATCCGGGTTGAG-TCCTGAAGGCATTCGTGCGAGTTACTATA
1 ATCCGGACTAAGATCC-GAAGGCATTCGTGCGAGTTACTA-A
* *
45270552 A-CCGGGCTATG-TCCCGAAGGCATT
1 ATCCGGACTAAGAT-CCGAAGGCATT
45270576 TGAATGTGTA
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
39 3 0.03
40 105 0.89
41 10 0.08
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:45270534 original size:80 final size:80
Alignment explanation
Indices: 45270391--45270578 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
45270381 TTCGAATGAT
* * *
45270391 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGACTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
45270456 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
** *
45270471 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCTGAAGG
1 ATCCGGACTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGATCC-GAAGG
*
45270532 CATTCGTGCGAGTTACTATA
62 CATACGTGCGAGTTACTA-A
* *
45270552 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGACTAAGTCCCGAAGGC-TTTGA
45270579 ATGTGTAGCC
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
79 4 0.04
80 78 0.85
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGACTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:45278374 original size:40 final size:40
Alignment explanation
Indices: 45278295--45278452 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
45278285 TTCGAATGAT
* * * *
45278295 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
45278335 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
45278375 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
45278415 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
45278453 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:45278473 original size:80 final size:80
Alignment explanation
Indices: 45278295--45278482 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
45278285 TTCGAATGAT
* *
45278295 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
45278360 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
45278375 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
45278436 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
45278456 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
45278483 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:45283206 original size:23 final size:22
Alignment explanation
Indices: 45283170--45283414 Score: 249
Period size: 23 Copynumber: 10.6 Consensus size: 22
45283160 GGAATCTATA
*
45283170 GGCTACAATACAGTGGTAGCTTC
1 GGCTAC-ATTCAGTGGTAGCTTC
45283193 GGCTACATCTCAGTGGTAGCTTC
1 GGCTACAT-TCAGTGGTAGCTTC
*
45283216 GGCTACAATAT-AGTGGTACCTTC
1 GGCTAC-AT-TCAGTGGTAGCTTC
*
45283239 AGCTACATCTCAGTGGTAGCTTC
1 GGCTACAT-TCAGTGGTAGCTTC
* *
45283262 GGCTACAATACAGTGGTAGCTTT
1 GGCTAC-ATTCAGTGGTAGCTTC
*
45283285 GGCTACATCTCAGTGGTAGCTTT
1 GGCTACAT-TCAGTGGTAGCTTC
45283308 GGCTACATCTCAGTGGTAGCTTC
1 GGCTACAT-TCAGTGGTAGCTTC
* * *
45283331 GGCTGCAATACAGTGGTAGCTTT
1 GGCTAC-ATTCAGTGGTAGCTTC
*
45283354 GGCTACAATACAGTGGTAGCTTC
1 GGCTAC-ATTCAGTGGTAGCTTC
* *
45283377 GGCTACGTTACAGTGATAGCTTC
1 GGCTACATT-CAGTGGTAGCTTC
* *
45283400 AGCTATATTACAGTG
1 GGCTACATT-CAGTG
45283415 TGGCACTTTG
Statistics
Matches: 193, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.04
23 178 0.92
24 7 0.04
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (22 bp):
GGCTACATTCAGTGGTAGCTTC
Found at i:45283244 original size:46 final size:46
Alignment explanation
Indices: 45283170--45283414 Score: 316
Period size: 46 Copynumber: 5.3 Consensus size: 46
45283160 GGAATCTATA
45283170 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
* * *
45283216 GGCTACAATATAGTGGTACCTTCAGCTACATCTCAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
* *
45283262 GGCTACAATACAGTGGTAGCTTTGGCTACATCTCAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
* * * *
45283308 GGCTAC-ATCTCAGTGGTAGCTTCGGCTGCAAT-ACAGTGGTAGCTTT
1 GGCTACAAT-ACAGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTC
* *
45283354 GGCTACAATACAGTGGTAGCTTCGGCTACGT-TACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCT-CAGTGGTAGCTTC
* * *
45283400 AGCTATATTACAGTG
1 GGCTACAATACAGTG
45283415 TGGCACTTTG
Statistics
Matches: 174, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
45 3 0.02
46 167 0.96
47 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (46 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTC
Found at i:45283282 original size:69 final size:69
Alignment explanation
Indices: 45283180--45283414 Score: 305
Period size: 69 Copynumber: 3.4 Consensus size: 69
45283170 GGCTACAATA
* * * *
45283180 CAGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTACCTTCAGCTA
1 CAGTGGTAGCTTCGGCTACAAT-ACAGTGGTAGCTTTGGCTACAATATAGTGGTAGCTTCGGCTA
45283244 CATCT
65 CATCT
* *
45283249 CAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTGGCTAC-ATCTCAGTGGTAGCTTTGGCTA
1 CAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTGGCTACAATAT-AGTGGTAGCTTCGGCTA
45283313 CATCT
65 CATCT
* *
45283318 CAGTGGTAGCTTCGGCTGCAATACAGTGGTAGCTTTGGCTACAATACAGTGGTAGCTTCGGCTAC
1 CAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTGGCTACAATATAGTGGTAGCTTCGGCTAC
*
45283383 GT-T
66 ATCT
* * * *
45283386 ACAGTGATAGCTTCAGCTATATTACAGTG
1 -CAGTGGTAGCTTCGGCTACAATACAGTG
45283415 TGGCACTTTG
Statistics
Matches: 146, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
68 4 0.03
69 138 0.95
70 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (69 bp):
CAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTGGCTACAATATAGTGGTAGCTTCGGCTAC
ATCT
Found at i:45287889 original size:41 final size:41
Alignment explanation
Indices: 45287843--45287924 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
45287833 GGCTGTGGCA
45287843 TTCAAAAATTACCTTCACGGAATACATCTAATTTTAATTTT
1 TTCAAAAATTACCTTCACGGAATACATCTAATTTTAATTTT
45287884 TTCAAAAATTACCTTCACGGAATACATCTAATTTTAATTTT
1 TTCAAAAATTACCTTCACGGAATACATCTAATTTTAATTTT
45287925 CTTATTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (41 bp):
TTCAAAAATTACCTTCACGGAATACATCTAATTTTAATTTT
Found at i:45289673 original size:43 final size:43
Alignment explanation
Indices: 45289625--45289760 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 43
45289615 CTGGCAATAA
45289625 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
* *** * *
45289668 GCCTGCTAG-GCTCGGAG-CTCGATA--ATATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTC-CGATATCAT-TTCACCGGCATT-AC
*
45289709 GCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
*
45289752 ACCTGCTAG
1 GCCTGCTAG
45289761 GCTCAAAGCC
Statistics
Matches: 70, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
40 4 0.06
41 18 0.26
42 18 0.26
43 26 0.37
44 4 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (43 bp):
GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
Found at i:45289800 original size:84 final size:84
Alignment explanation
Indices: 45289623--45289801 Score: 252
Period size: 84 Copynumber: 2.1 Consensus size: 84
45289613 CACTGGCAAT
* ** *
45289623 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCTC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCAAAGCCC
**
45289688 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCACA
*
45289707 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCAAAGCCC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCAAAGCCC
* *
45289772 GA-AATTTATCACCGGCACA
66 GATAATAT-TCACCAGCACA
*
45289791 AGGCCTGCTAG
1 AAGCCTGCTAG
45289802 GTTTGAAACC
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
83 4 0.05
84 79 0.95
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (84 bp):
AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCTGCTAGGCTCAAAGCCC
GATAATATTCACCAGCACA
Done.