Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 164 of 444
Found at i:45291680 original size:14 final size:15
Alignment explanation
Indices: 45291651--45291680 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45291641 CAAAATTAAG
45291651 ACATGATACTTTCAC
1 ACATGATACTTTCAC
45291666 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
45291680 A
1 A
45291681 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:45293293 original size:23 final size:23
Alignment explanation
Indices: 45293259--45293353 Score: 122
Period size: 23 Copynumber: 4.2 Consensus size: 23
45293249 AATCTATAGG
45293259 CTACAATACAGTGGTAGCTTCGA
1 CTACAATACAGTGGTAGCTTCGA
* *
45293282 CTAC-ATCTCAGTGGTAGCTTCGG
1 CTACAAT-ACAGTGGTAGCTTCGA
* *
45293305 CTACAATACAGTGGTAGCTTTGG
1 CTACAATACAGTGGTAGCTTCGA
*
45293328 CTACAATACAGTGGT-GCTTCGG
1 CTACAATACAGTGGTAGCTTCGA
45293350 CTAC
1 CTAC
45293354 GTTACAATGA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
22 12 0.18
23 51 0.78
24 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (23 bp):
CTACAATACAGTGGTAGCTTCGA
Found at i:45293324 original size:46 final size:45
Alignment explanation
Indices: 45293257--45293353 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 45
45293247 GGAATCTATA
*
45293257 GGCTACAATACAGTGGTAGCTTCGACTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTCGACTACAAT-ACAGTGGT-GCTTC
* *
45293303 GGCTACAATACAGTGGTAGCTTTGGCTACAATACAGTGGTGCTTC
1 GGCTACAATACAGTGGTAGCTTCGACTACAATACAGTGGTGCTTC
45293348 GGCTAC
1 GGCTAC
45293354 GTTACAATGA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
45 11 0.23
46 34 0.72
47 2 0.04
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (45 bp):
GGCTACAATACAGTGGTAGCTTCGACTACAATACAGTGGTGCTTC
Found at i:45293383 original size:45 final size:46
Alignment explanation
Indices: 45293257--45293385 Score: 120
Period size: 45 Copynumber: 2.8 Consensus size: 46
45293247 GGAATCTATA
* * *
45293257 GGCTACAATACAGTGGTAGCTTC-GACTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAATACAATGATAGCTTCAG-CTACAAT-ACAGTGGTAGCTTC
* * **
45293303 GGCTACAATACAGTGGTAGCTTTGGCTACAATACAGTGGT-GCTTC
1 GGCTACAATACAATGATAGCTTCAGCTACAATACAGTGGTAGCTTC
** * *
45293348 GGCTACGTTACAATGATAGCTTCAGCTATATTACAGTG
1 GGCTACAATACAATGATAGCTTCAGCTACAATACAGTG
45293386 TGGTACTTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
45 35 0.49
46 33 0.46
47 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (46 bp):
GGCTACAATACAATGATAGCTTCAGCTACAATACAGTGGTAGCTTC
Found at i:45298492 original size:57 final size:57
Alignment explanation
Indices: 45298404--45298615 Score: 205
Period size: 57 Copynumber: 3.7 Consensus size: 57
45298394 GTATTATAGG
* *
45298404 ATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAACTCAATTAGT
1 ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTCAATTAGT
* * * * * * *
45298461 ATTACTAGTCCAGGTTAAATCCTA-ATTGTAACATATACTCGAGAGGAA-TTATATCAGG
1 ATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCTC-AGAAGAACTCA-ATTAGT
* *** * **
45298519 ATTACCCGTTTGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGT
1 ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTCAATTAGT
* *
45298576 ATTACTAGTCCAAGCTAAATCCTA-ATTGTAACATATGCTC
1 ATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCTC
45298616 GAGAGAAATT
Statistics
Matches: 117, Mismatches: 32, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
56 2 0.02
57 74 0.63
58 40 0.34
59 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (57 bp):
ATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAACTCAATTAGT
Found at i:45298540 original size:58 final size:58
Alignment explanation
Indices: 45298476--45298656 Score: 188
Period size: 58 Copynumber: 3.1 Consensus size: 58
45298466 TAGTCCAGGT
* *
45298476 TAAATCCTAATTGTAACATATACTCGAGAGGAATTATATCAGGATTACCCGTTTGGGC
1 TAAATCCTAATTGTAACATATGCTCGAGAGGAATTATATCAGGATTACCCGTTCGGGC
* ** * * * * ** * **
45298534 TAAATCCT-TTATGTAATGTATGCTC-AGAAGAACTCA-ATTAGTATTACTAGTCCAAGC
1 TAAATCCTAAT-TGTAACATATGCTCGAGAGGAA-TTATATCAGGATTACCCGTTCGGGC
*
45298591 TAAATCCTAATTGTAACATATGCTCGAGAGAAATTATATCAGGATTACCCGTTCGGGC
1 TAAATCCTAATTGTAACATATGCTCGAGAGGAATTATATCAGGATTACCCGTTCGGGC
45298649 TAAATCCT
1 TAAATCCT
45298657 TTCTATAATG
Statistics
Matches: 91, Mismatches: 27, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
57 42 0.46
58 49 0.54
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (58 bp):
TAAATCCTAATTGTAACATATGCTCGAGAGGAATTATATCAGGATTACCCGTTCGGGC
Found at i:45298666 original size:115 final size:115
Alignment explanation
Indices: 45298401--45298658 Score: 435
Period size: 115 Copynumber: 2.2 Consensus size: 115
45298391 ATTGTATTAT
* * * *
45298401 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAACTCAATTAGTATTAC
1 AGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGTATTAC
* * *
45298466 TAGTCCAGGTTAAATCCTAATTGTAACATATACTCGAGAGGAATTATATC
66 TAGTCCAAGCTAAATCCTAATTGTAACATATACTCGAGAGAAATTATATC
*
45298516 AGGATTACCCGTTTGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGTATTAC
1 AGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGTATTAC
*
45298581 TAGTCCAAGCTAAATCCTAATTGTAACATATGCTCGAGAGAAATTATATC
66 TAGTCCAAGCTAAATCCTAATTGTAACATATACTCGAGAGAAATTATATC
45298631 AGGATTACCCGTTCGGGCTAAATCCTTT
1 AGGATTACCCGTTCGGGCTAAATCCTTT
45298659 CTATAATGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 133 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (115 bp):
AGGATTACCCGTTCGGGCTAAATCCTTTATGTAATGTATGCTCAGAAGAACTCAATTAGTATTAC
TAGTCCAAGCTAAATCCTAATTGTAACATATACTCGAGAGAAATTATATC
Found at i:45299509 original size:31 final size:31
Alignment explanation
Indices: 45299474--45299537 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
45299464 GACAAGGAAA
*
45299474 CTTACCCAATTAAGCCTTGAAAGTTTCTTCT
1 CTTACCCAATTAAACCTTGAAAGTTTCTTCT
*
45299505 CTTACCCAATTAAACCTTGAAATTTTCTTCT
1 CTTACCCAATTAAACCTTGAAAGTTTCTTCT
45299536 CT
1 CT
45299538 CTCTCCTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.41
Consensus pattern (31 bp):
CTTACCCAATTAAACCTTGAAAGTTTCTTCT
Found at i:45299853 original size:14 final size:14
Alignment explanation
Indices: 45299834--45299860 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45299824 CTAAATCGAT
45299834 AAAATTTTCGTATC
1 AAAATTTTCGTATC
45299848 AAAATTTTCGTAT
1 AAAATTTTCGTAT
45299861 GACATGTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (14 bp):
AAAATTTTCGTATC
Found at i:45303698 original size:21 final size:22
Alignment explanation
Indices: 45303664--45303706 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
45303654 ATGTTTAATC
45303664 ATATTGAAAATTATAATATTTT
1 ATATTGAAAATTATAATATTTT
*
45303686 ATATT-AATATTATAATATTTT
1 ATATTGAAAATTATAATATTTT
45303707 TTAAAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATTGAAAATTATAATATTTT
Found at i:45310244 original size:26 final size:26
Alignment explanation
Indices: 45310213--45310268 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
45310203 TGAAATTTCC
45310213 ATCAT-GAAGCATTTACCTAACCCATT
1 ATCATGGAA-CATTTACCTAACCCATT
45310239 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
45310265 ATCA
1 ATCA
45310269 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:45316214 original size:24 final size:24
Alignment explanation
Indices: 45316182--45316240 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
45316172 AGGGCACACA
* *
45316182 TAAACCTCCACGATACTCAGGTGG
1 TAAACCTCCACGACACTCAGGAGG
* *
45316206 TAAACCTCCAAGACACTCGGGAGG
1 TAAACCTCCACGACACTCAGGAGG
45316230 TAAACCTCCAC
1 TAAACCTCCAC
45316241 ATGTTGAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACGACACTCAGGAGG
Found at i:45316415 original size:24 final size:24
Alignment explanation
Indices: 45316383--45316442 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
45316373 AGGGCACACA
*
45316383 TAAACCTCCACAACACTCAGGTGG
1 TAAACCTCCACAACACTCAGGGGG
* *
45316407 TAAACCTCCACGACATTCAGGGGG
1 TAAACCTCCACAACACTCAGGGGG
45316431 TAAACCTCCACA
1 TAAACCTCCACA
45316443 TGTTGAAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACAACACTCAGGGGG
Found at i:45316498 original size:171 final size:171
Alignment explanation
Indices: 45316281--45316872 Score: 812
Period size: 171 Copynumber: 3.4 Consensus size: 171
45316271 CCATGAAGCC
* * * *
45316281 ATTCCCTGGTGACAAACCATCTAAGGGTAATGAAAAGGGAGCACCTCATGAACCTAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
*
45316346 ATAGACACTTATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
66 ATAGACACATATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
45316411 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
131 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
* * *
45316452 ATTTCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGGGCACCTCATGAACCCAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
* * *
45316517 ACAGACACATATTGAGTGTGGAAGTTGAGGGCATACATAAACCTCCACAACAATCAGGTGGTAAA
66 ATAGACACATATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
45316582 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
131 CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
45316623 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
* * * * * *
45316688 ATAGACACCTATTGAATGTCGAAGTTGAGGACACACATAAGCCTCCACAACACTCAGGGGGTAAA
66 ATAGACACATATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
* * ** * * ** **
45316753 CCTCCACATGTTGAAGGATTCCCCGACGGTAAGCCACC-CA--TAAAACC
131 CCTCCAC-----G-A-CATT--CAGGGGGTAAACCTCCACATGTTGAAGG
* * *
45316800 ATTCCCCGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGTACCTCATGAACCTAAACCTCCTC
1 ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
45316865 ATAGACAC
66 ATAGACAC
45316873 CTCTTAAGTG
Statistics
Matches: 377, Mismatches: 35, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
171 286 0.76
176 1 0.00
177 74 0.20
178 3 0.01
179 2 0.01
180 11 0.03
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (171 bp):
ATTCCCTGGTGACAAACCATCCAAGGGTAAGGGAAAGGGAGCACCTCATGAACCAAAACCTCCTC
ATAGACACATATTGAGTGTGGAAGTTGAGGGCACACATAAACCTCCACAACACTCAGGTGGTAAA
CCTCCACGACATTCAGGGGGTAAACCTCCACATGTTGAAGG
Found at i:45316586 original size:24 final size:24
Alignment explanation
Indices: 45316554--45316613 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
45316544 AGGGCATACA
*
45316554 TAAACCTCCACAACAATCAGGTGG
1 TAAACCTCCACAACAATCAGGGGG
* *
45316578 TAAACCTCCACGACATTCAGGGGG
1 TAAACCTCCACAACAATCAGGGGG
45316602 TAAACCTCCACA
1 TAAACCTCCACA
45316614 TGTTGAAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.35, C:0.32, G:0.17, T:0.17
Consensus pattern (24 bp):
TAAACCTCCACAACAATCAGGGGG
Found at i:45321148 original size:93 final size:93
Alignment explanation
Indices: 45320989--45321160 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
45320979 CGCCCATAAG
* * * *
45320989 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTTAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
45321054 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
45321082 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
45321147 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45321161 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45321150 original size:46 final size:46
Alignment explanation
Indices: 45320982--45321157 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
45320972 TGTAACCCGC
* * * *
45320982 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * ** * *
45321028 CCATGAGTGAACTTAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
45321078 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
45321121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45321158 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:45323238 original size:12 final size:12
Alignment explanation
Indices: 45323209--45323258 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
45323199 TCCACCACAC
* *
45323209 CTCTCTTCTTCT
1 CTCTTTTCTTTT
*
45323221 CCCTTTTCTTTT
1 CTCTTTTCTTTT
45323233 CTCTTTTCTTCTT
1 CTCTTTTCTT-TT
45323246 CT-TTTTCTTTT
1 CTCTTTTCTTTT
45323257 CT
1 CT
45323259 TTATTCCTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 4 0.12
12 25 0.76
13 4 0.12
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
CTCTTTTCTTTT
Found at i:45323241 original size:24 final size:24
Alignment explanation
Indices: 45323209--45323258 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
45323199 TCCACCACAC
45323209 CTCTCTTCTTCTCCCTTTTCTTTT
1 CTCTCTTCTTCTCCCTTTTCTTTT
* * *
45323233 CTCTTTTCTTCTTCTTTTTCTTTT
1 CTCTCTTCTTCTCCCTTTTCTTTT
45323257 CT
1 CT
45323259 TTATTCCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (24 bp):
CTCTCTTCTTCTCCCTTTTCTTTT
Found at i:45323256 original size:17 final size:18
Alignment explanation
Indices: 45323226--45323259 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45323216 CTTCTCCCTT
45323226 TTCTTTTCTCTTTTCTTC
1 TTCTTTTCTCTTTTCTTC
45323244 TTCTTTT-TCTTTTCTT
1 TTCTTTTCTCTTTTCTT
45323260 TATTCCTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTTTCTCTTTTCTTC
Found at i:45324257 original size:10 final size:10
Alignment explanation
Indices: 45324242--45324269 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
45324232 CATGAAAAAC
45324242 ACATGATTAA
1 ACATGATTAA
45324252 ACATGATTAA
1 ACATGATTAA
45324262 ACATGATT
1 ACATGATT
45324270 TGCATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (10 bp):
ACATGATTAA
Found at i:45325887 original size:31 final size:30
Alignment explanation
Indices: 45325847--45325956 Score: 87
Period size: 31 Copynumber: 3.6 Consensus size: 30
45325837 GAAATTACTC
*
45325847 AGATTAATATTAAATTAATAAAATACTATAA
1 AGATAAATATTAAATTAATAAAATACTAT-A
* ** * *
45325878 AGATAAATATTAAATCAAATTTAATA-TCTC
1 AGATAAATATTAAAT-TAATAAAATACTATA
* * * *
45325908 ACATTAATATTAAATTAGTAAAATACAATCA
1 AGATAAATATTAAATTAATAAAATACTAT-A
*
45325939 AGATAACTATTAAATTAA
1 AGATAAATATTAAATTAA
45325957 ATTAGATATT
Statistics
Matches: 57, Mismatches: 19, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
29 6 0.11
30 14 0.25
31 30 0.53
32 7 0.12
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (30 bp):
AGATAAATATTAAATTAATAAAATACTATA
Found at i:45325930 original size:61 final size:61
Alignment explanation
Indices: 45325844--45325959 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 61
45325834 ATTGAAATTA
* *
45325844 CTCAGATTAATATTAAATTAATAAAATACTATAAAGATAAATATTAAATCAAATTTAATAT
1 CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAATTTAATAT
* * * *
45325905 CTCACATTAATATTAAATTAGTAAAATACAATCAAGATAACTATTAAATTAAATT
1 CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAATT
45325960 AGATATTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.35
Consensus pattern (61 bp):
CTCACATTAATATTAAATTAATAAAATACAATAAAGATAAATATTAAATCAAATTTAATAT
Found at i:45330708 original size:37 final size:37
Alignment explanation
Indices: 45330667--45330748 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
45330657 ACTCGATAAT
*
45330667 ACGCCAAACACTCGTAACAGCTAATCCAACCGAAAAC
1 ACGCCAAACACTCATAACAGCTAATCCAACCGAAAAC
** * * *
45330704 ACGCCAAATGCTCATAAGAGCTAATCCACCCGATAAC
1 ACGCCAAACACTCATAACAGCTAATCCAACCGAAAAC
*
45330741 ACACCAAA
1 ACGCCAAA
45330749 ATAAGGACTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.34, G:0.11, T:0.12
Consensus pattern (37 bp):
ACGCCAAACACTCATAACAGCTAATCCAACCGAAAAC
Found at i:45332298 original size:15 final size:16
Alignment explanation
Indices: 45332265--45332298 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
45332255 TTATGTGTTT
45332265 AAAATGTTTAAGTTAA
1 AAAATGTTTAAGTTAA
45332281 AAAATGTTTAAGTTAA
1 AAAATGTTTAAGTTAA
45332297 AA
1 AA
45332299 GGGTAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (16 bp):
AAAATGTTTAAGTTAA
Found at i:45336580 original size:44 final size:46
Alignment explanation
Indices: 45336516--45336636 Score: 120
Period size: 47 Copynumber: 2.7 Consensus size: 46
45336506 AAGTGCTGAT
* ** * *
45336516 GCATGTCCCATACATTTCTTACACTAGCACGAACCTT-A-GCAGAG
1 GCATGTCCCAGACACGTCTTACACTAGCACCAACATTGAGGCAGAG
* * * * *
45336560 GCATGTCCCAGACACGTCTTACACCAGTTACCATCATTGAGGCCGAT
1 GCATGTCCCAGACACGTCTTACACTAG-CACCAACATTGAGGCAGAG
*
45336607 GCATGTCCTAGACACGTCTTACACTAGCAC
1 GCATGTCCCAGACACGTCTTACACTAGCAC
45336637 TCATCTCTAC
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 23 0.38
45 6 0.10
46 3 0.05
47 29 0.48
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (46 bp):
GCATGTCCCAGACACGTCTTACACTAGCACCAACATTGAGGCAGAG
Found at i:45336705 original size:94 final size:93
Alignment explanation
Indices: 45336604--45336777 Score: 244
Period size: 94 Copynumber: 1.8 Consensus size: 93
45336594 CATTGAGGCC
*
45336604 GATGCATG-TCCTAGACACGTCTTACACTAGCACTCATCTC-TACGACGATGCCATGTCTCAGAC
1 GATGCATGTTCC-AGACACGTCTTACACTAGCACTCATCTCATAC--CGATGCCATGTCCCAGAC
*
45336667 ATGGTCTTACATTGGCTATCGTAATGTGGCT
63 ATGGTCTTACACTGGCTATCGTAATGTGGCT
* * * *
45336698 GATGCATGTTCCAGACATGTCTTACACTAGCTCTCGTCTCAATACCGATGCTATGTCCCAGACAT
1 GATGCATGTTCCAGACACGTCTTACACTAGCACTCATCTC-ATACCGATGCCATGTCCCAGACAT
45336763 GGTCTTACACTGGCT
65 GGTCTTACACTGGCT
45336778 CTCACATAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
94 65 0.92
95 3 0.04
96 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (93 bp):
GATGCATGTTCCAGACACGTCTTACACTAGCACTCATCTCATACCGATGCCATGTCCCAGACATG
GTCTTACACTGGCTATCGTAATGTGGCT
Found at i:45343147 original size:30 final size:30
Alignment explanation
Indices: 45343100--45343157 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
45343090 ATGGAGCAGA
* * *
45343100 CCATGTGTCACAGAAGGCTTTGACACATGC
1 CCATGTGTCACACAAGGCCTAGACACATGC
45343130 CCATGTGTCTAC-CAAGGCCTAGACACAT
1 CCATGTGTC-ACACAAGGCCTAGACACAT
45343158 ACCTGTGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (30 bp):
CCATGTGTCACACAAGGCCTAGACACATGC
Found at i:45346750 original size:27 final size:27
Alignment explanation
Indices: 45346720--45346772 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
45346710 TTACCATTCC
* *
45346720 TTCAGAGTTCGCCACATATATTGTTCG
1 TTCAGAGTTCACCACATATACTGTTCG
* *
45346747 TTCAGATTTCACCATATATACTGTTC
1 TTCAGAGTTCACCACATATACTGTTC
45346773 TTTTAGATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.40
Consensus pattern (27 bp):
TTCAGAGTTCACCACATATACTGTTCG
Found at i:45350347 original size:47 final size:47
Alignment explanation
Indices: 45350293--45350486 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
45350283 TTAGGATTTT
** * *
45350293 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45350340 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45350387 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
45350434 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45350481 ATGTGA
1 ATGTGA
45350487 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45350393 original size:22 final size:22
Alignment explanation
Indices: 45350322--45350440 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
45350312 GTATATATGA
45350322 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
45350344 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
45350369 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
45350391 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
45350416 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
45350438 GAT
1 GAT
45350441 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:45350800 original size:37 final size:37
Alignment explanation
Indices: 45350692--45350800 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
45350682 GGAAATATAT
*
45350692 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45350729 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
45350766 TCCGGGTAAAACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
45350801 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:45352243 original size:80 final size:80
Alignment explanation
Indices: 45352063--45352413 Score: 551
Period size: 80 Copynumber: 4.4 Consensus size: 80
45352053 GAGAATTGAG
* * *
45352063 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAA-CCCG
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
45352127 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
** * *
45352142 AGTGATGTATCTAGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
45352207 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
45352222 AGTGATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
45352287 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
45352302 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTTGTGCTAGTGATATATCCGTGCTAAACCCCA
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
45352367 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * *
45352382 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
45352414 ATCATGCTGG
Statistics
Matches: 253, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
79 55 0.22
80 198 0.78
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (80 bp):
AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
AAGAGCATTCGTGCT
Found at i:45352425 original size:40 final size:40
Alignment explanation
Indices: 45352063--45352413 Score: 434
Period size: 40 Copynumber: 8.8 Consensus size: 40
45352053 GAGAATTGAG
*
45352063 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
45352103 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** * * *
45352142 AGTGATGTATCTAGGCTAAGTTCCAAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
45352182 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
45352222 AGTGATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
45352262 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
45352302 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
45352342 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
45352382 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
45352414 ATCATGCTGG
Statistics
Matches: 256, Mismatches: 54, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 33 0.13
40 223 0.87
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:45355240 original size:22 final size:22
Alignment explanation
Indices: 45355212--45355256 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
45355202 CGAATAGCCG
45355212 TGGATATCTAGTCGTCGACCGC
1 TGGATATCTAGTCGTCGACCGC
45355234 TGGATATCTAGTCGTCGACCGC
1 TGGATATCTAGTCGTCGACCGC
45355256 T
1 T
45355257 TTCGAGGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.29
Consensus pattern (22 bp):
TGGATATCTAGTCGTCGACCGC
Found at i:45356359 original size:47 final size:47
Alignment explanation
Indices: 45356305--45356497 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
45356295 TTAGGATTTT
** * *
45356305 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45356352 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45356399 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
45356446 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCC-AATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45356492 ATGTGA
1 ATGTGA
45356498 AATATGTATG
Statistics
Matches: 134, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 13 0.10
47 121 0.90
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45356405 original size:22 final size:22
Alignment explanation
Indices: 45356334--45356452 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
45356324 GTATATATGA
45356334 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
45356356 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
45356381 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
45356403 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
45356428 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
45356450 GAT
1 GAT
45356453 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:45356578 original size:51 final size:52
Alignment explanation
Indices: 45356467--45356578 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 52
45356457 ATGAACATGC
* *
45356467 ATATATGTGGTAAAGCCAATGGCTAATGTGAAATATGTATGAGATATGTATGT
1 ATAT-TGTGGTAAAGCCAATGGCTAATGTGAAATATGTATGAGAGATGTACGT
* * *
45356520 ATA-TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA-G-GCGATGTGCGT
1 ATATTGTGGTAAAGCC-AATGGCTAATGTGAAATATGTATGAGAGATGTACGT
45356570 ATATTGTGG
1 ATATTGTGG
45356579 CCGAACGACC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
50 10 0.19
51 18 0.35
52 21 0.40
53 3 0.06
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.32
Consensus pattern (52 bp):
ATATTGTGGTAAAGCCAATGGCTAATGTGAAATATGTATGAGAGATGTACGT
Found at i:45356803 original size:36 final size:37
Alignment explanation
Indices: 45356704--45356811 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
45356694 GGAAATATAT
*
45356704 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45356741 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
45356778 TCCGGGTAA-ACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
45356812 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 23 0.34
37 45 0.66
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:45360530 original size:30 final size:28
Alignment explanation
Indices: 45360504--45360572 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
45360494 ATATCAAAAT
45360504 TTCATGTATAAAATTACACAAAATCAAA
1 TTCATGTATAAAATTACACAAAATCAAA
* * *
45360532 TTCTTGTATACAATTACACATTAAATCATGA
1 TTCATGTATAAAATTACACA--AAATCA-AA
45360563 TTCATGTATA
1 TTCATGTATA
45360573 GTTTTAAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 18 0.53
30 6 0.18
31 10 0.29
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.36
Consensus pattern (28 bp):
TTCATGTATAAAATTACACAAAATCAAA
Found at i:45361807 original size:18 final size:17
Alignment explanation
Indices: 45361776--45361817 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
45361766 TTATTTAATT
45361776 AAAAAATTTAAAAAGGA
1 AAAAAATTTAAAAAGGA
* *
45361793 ATAAAATTTATAAAATGA
1 AAAAAATTTA-AAAAGGA
45361811 AAAAAAT
1 AAAAAAT
45361818 ATACAAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (17 bp):
AAAAAATTTAAAAAGGA
Found at i:45362215 original size:11 final size:10
Alignment explanation
Indices: 45362165--45362212 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
45362155 TAACATGTTG
*
45362165 AATTTTAATT
1 AATTTTGATT
*
45362175 AATTTTATAATT
1 AA-TTT-TGATT
45362187 AATTTTGATT
1 AATTTTGATT
45362197 AATTTTGATT
1 AATTTTGATT
*
45362207 TATTTT
1 AATTTT
45362213 TGACAGATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 21 0.62
11 6 0.18
12 7 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (10 bp):
AATTTTGATT
Found at i:45365727 original size:49 final size:49
Alignment explanation
Indices: 45365672--45366278 Score: 1061
Period size: 49 Copynumber: 12.4 Consensus size: 49
45365662 TATTAAAATT
* *
45365672 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
45365721 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45365770 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
45365819 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45365868 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
45365917 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45365966 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45366015 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
45366064 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45366113 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45366162 TGTGAAAGTGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45366211 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45366260 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
45366279 ATGTGGTAAA
Statistics
Matches: 532, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 532 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:45365986 original size:27 final size:27
Alignment explanation
Indices: 45365956--45366038 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
45365946 CTAATGGCCA
45365956 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
45365983 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
45366006 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
45366032 ATGTGAT
1 ATGTGAT
45366039 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:45376242 original size:75 final size:75
Alignment explanation
Indices: 45376137--45376293 Score: 260
Period size: 75 Copynumber: 2.1 Consensus size: 75
45376127 TTTCAAAAAA
* ** *
45376137 CAAACAAAATATGTTATACTAACAAAATGATCCTATAGTTGTAAGATGTTAACCAACCATTTCAA
1 CAAA-AAAAAATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAA
45376202 CAAATCATTTC
65 CAAATCATTTC
*
45376213 CAAAAAAAAATGTTATGCTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAAC
1 CAAAAAAAAATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAAC
45376278 AAATCATTTC
66 AAATCATTTC
45376288 CAAAAA
1 CAAAAA
45376294 CAAACAAAAT
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 72 0.95
76 4 0.05
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.27
Consensus pattern (75 bp):
CAAAAAAAAATGTTATACTAACAAAATGATCCTATAGCAGTAAAATGTTAACCAACCATTTCAAC
AAATCATTTC
Found at i:45387464 original size:54 final size:54
Alignment explanation
Indices: 45387292--45387494 Score: 185
Period size: 54 Copynumber: 3.8 Consensus size: 54
45387282 TTCCTTTTTA
* * * ** *
45387292 AACTTACCATTGACATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * * * *
45387345 AACTCACCATTGCCATGCCTTGACATGGTCTTA-TTGGGATCTTTGTCTTGTAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * *
45387398 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTATAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* ** *
45387453 AACTTGCCAATGCCATGCCTTGGGATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
45387495 CTTAAACCCT
Statistics
Matches: 117, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
52 13 0.11
53 31 0.26
54 59 0.50
55 14 0.12
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:45389161 original size:76 final size:76
Alignment explanation
Indices: 45389045--45389189 Score: 168
Period size: 76 Copynumber: 1.9 Consensus size: 76
45389035 AATGCAAGTC
* * * ** *
45389045 TTAAATGATGCTAATGTATTAATGCAAAGCATTAGCTAAAGACACATTCAATAAACAAGAA-ATA
1 TTAAAAGATGCTAATGTATTAATGCAAAACATCAAATAAAGACACATTCAACAAACAA-AACATA
45389109 TAATGCACATTT
65 TAATGCACATTT
* ** *
45389121 TTAAAAGATG-TAGATGTATTAATGCAAAATATCAAATAAAGATGCATTTAACAAACAAAACATA
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATCAAATAAAGACACATTCAACAAACAAAACATA
45389185 TAATG
65 TAATG
45389190 AAGTAGATCA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
75 4 0.07
76 53 0.93
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (76 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATCAAATAAAGACACATTCAACAAACAAAACATAT
AATGCACATTT
Found at i:45389617 original size:18 final size:18
Alignment explanation
Indices: 45389594--45389639 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
45389584 CCCCCTCCTC
45389594 ACCACCTTCATCACTCTA
1 ACCACCTTCATCACTCTA
*
45389612 ACCACCTTCATCACTCTC
1 ACCACCTTCATCACTCTA
*
45389630 GCCACCTTCA
1 ACCACCTTCA
45389640 CTAACAGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.24, C:0.48, G:0.02, T:0.26
Consensus pattern (18 bp):
ACCACCTTCATCACTCTA
Found at i:45389781 original size:42 final size:41
Alignment explanation
Indices: 45389710--45389810 Score: 148
Period size: 42 Copynumber: 2.4 Consensus size: 41
45389700 CCCTCACCTA
* *
45389710 AACCTTCACCACCTCCTTCACCTTACCACATTTACTGCCAAC
1 AACC-TCACCACCTCCCTCACCTCACCACATTTACTGCCAAC
45389752 AACCTCACCACCTCCCTCACCATCACCACATTTACTGCCAAC
1 AACCTCACCACCTCCCTCACC-TCACCACATTTACTGCCAAC
*
45389794 AACCTTACCACCCTCCC
1 AACCTCACCA-CCTCCC
45389811 CAGCTTCATT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
41 16 0.30
42 32 0.59
43 6 0.11
ACGTcount: A:0.27, C:0.50, G:0.02, T:0.22
Consensus pattern (41 bp):
AACCTCACCACCTCCCTCACCTCACCACATTTACTGCCAAC
Found at i:45400926 original size:18 final size:19
Alignment explanation
Indices: 45400903--45400942 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
45400893 TTTTGTAAAT
*
45400903 TTTTTTAAATTTTAATT-A
1 TTTTTTAAATTTAAATTCA
*
45400921 TTTTTTAAGTTTAAATTCA
1 TTTTTTAAATTTAAATTCA
45400940 TTT
1 TTT
45400943 GCTGATGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTTAAATTTAAATTCA
Found at i:45408390 original size:2 final size:2
Alignment explanation
Indices: 45408329--45408370 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
45408319 CGGTATTAAA
45408329 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
45408371 GTTATTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45408408 original size:29 final size:31
Alignment explanation
Indices: 45408351--45408419 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
45408341 ATATATATAT
* * *
45408351 ATATATATATATATGATATAGTTATTAAAAA
1 ATATATATATACATGAGATAGATATTAAAAA
*
45408382 ATATATATATACATGAGATA-ATATAAAAAA
1 ATATATATATACATGAGATAGATATTAAAAA
45408412 ATA-ATATA
1 ATATATATA
45408420 GTATTCGGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 5 0.15
30 11 0.32
31 18 0.53
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (31 bp):
ATATATATATACATGAGATAGATATTAAAAA
Found at i:45408831 original size:24 final size:23
Alignment explanation
Indices: 45408781--45408833 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
45408771 GTATAACAAT
45408781 GATAA-AAAATAATAATAGTGAAA
1 GATAATAAAATAATAATAG-GAAA
45408804 -ATAATAAATATAATAATA-GAAA
1 GATAATAAA-ATAATAATAGGAAA
45408826 CGATAATA
1 -GATAATA
45408834 CTATATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 8 0.31
23 3 0.12
24 15 0.58
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (23 bp):
GATAATAAAATAATAATAGGAAA
Found at i:45408881 original size:20 final size:21
Alignment explanation
Indices: 45408848--45408887 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45408838 ATAAAAGTAT
45408848 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
45408868 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
45408888 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:45408921 original size:28 final size:29
Alignment explanation
Indices: 45408890--45408945 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
45408880 ATTAATAATG
* * *
45408890 AATATAATATTATAAT-ACTAATAATAAC
1 AATATAAAATTAAAATAACTAAAAATAAC
45408918 AATATAAAATTAAAATAACTAAAAATAA
1 AATATAAAATTAAAATAACTAAAAATAA
45408946 TACCATATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (29 bp):
AATATAAAATTAAAATAACTAAAAATAAC
Found at i:45410784 original size:66 final size:69
Alignment explanation
Indices: 45410709--45410871 Score: 170
Period size: 79 Copynumber: 2.3 Consensus size: 69
45410699 TCGACATGTA
* * *
45410709 ACCCAAGGCTCAACTCAC-ATGAGTTGA--TTTTTTGGAAAACAGAAACAAAAAATACCTTAGTG
1 ACCCGAGGCTCAACTCACAATGAGTTGATTTTTTTTGAAAAACAGAAACAAAAAATACCTTAGCG
45410771 TGTG
66 TGTG
* *
45410775 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAGAAACTAAAAA
1 ACCCGAGGCTCAACTCA-------C-A-ATGAGTTGA-TTTTTTTTGAAAAACAGAAACAAAAAA
45410840 TACCTTAGCGTGTG
56 TACCTTAGCGTGTG
45410854 ACCCGAGGCTCAACTCAC
1 ACCCGAGGCTCAACTCAC
45410872 CTCTCGCAAT
Statistics
Matches: 79, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
66 16 0.20
72 1 0.01
73 1 0.01
76 9 0.11
79 52 0.66
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (69 bp):
ACCCGAGGCTCAACTCACAATGAGTTGATTTTTTTTGAAAAACAGAAACAAAAAATACCTTAGCG
TGTG
Found at i:45410833 original size:79 final size:79
Alignment explanation
Indices: 45410736--45410905 Score: 290
Period size: 79 Copynumber: 2.2 Consensus size: 79
45410726 CATGAGTTGA
* *
45410736 TTTTTTGGAAAACAGAAACAAAAAATACCTTAGTGTGTGACCCGAGGCTCAACTCACCTCTCGCA
1 TTTTTTGAAAAACAGAAACAAAAAATACCTTAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
45410801 ATATGAGTTGATTT
66 ATATGAGTTGATTT
* *
45410815 TTTTTTGAAAAATAGAAACTAAAAATACCTTAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
1 TTTTTTGAAAAACAGAAACAAAAAATACCTTAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
45410880 ATATGAGTTGA--T
66 ATATGAGTTGATTT
45410892 TTTTTTGAAAAACA
1 TTTTTTGAAAAACA
45410906 TAAATTGAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
77 14 0.16
79 72 0.84
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (79 bp):
TTTTTTGAAAAACAGAAACAAAAAATACCTTAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTT
Found at i:45410915 original size:14 final size:14
Alignment explanation
Indices: 45410896--45410930 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45410886 GTTGATTTTT
*
45410896 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
45410910 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
45410924 TTGAAAA
1 TTGAAAA
45410931 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:45410972 original size:89 final size:89
Alignment explanation
Indices: 45410863--45411091 Score: 329
Period size: 89 Copynumber: 2.6 Consensus size: 89
45410853 GACCCGAGGC
*
45410863 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAACAGA-ATTTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAGACA-TTG
* * * *
45410927 AAAATACCTCAGTGTGTCCTGATGA
65 AAAATACCTCAGCGTGCCCTAAGGA
* * *
45410952 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGCCGACATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAGACATTGA
*
45411017 AAATACCTCAGCGTGCCCTAAGGC
66 AAATACCTCAGCGTGCCCTAAGGA
* *
45411041 TCAACTCACCTCTAGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAA
45411092 TTACCTCAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
87 21 0.17
89 105 0.83
90 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (89 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAGACATTGA
AAATACCTCAGCGTGCCCTAAGGA
Found at i:45411004 original size:14 final size:14
Alignment explanation
Indices: 45410985--45411019 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45410975 GTTGATTTTT
45410985 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
* *
45410999 TTGAAAAGCCGACA
1 TTGAAAAGCAGAAA
45411013 TTGAAAA
1 TTGAAAA
45411020 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:45411132 original size:73 final size:72
Alignment explanation
Indices: 45411012--45411158 Score: 240
Period size: 73 Copynumber: 2.0 Consensus size: 72
45411002 AAAAGCCGAC
45411012 ATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAC
1 ATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGA-
*
45411077 AAACAGAA
65 AAACAAAA
* * * *
45411085 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 ATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAA
45411150 AACAAAA
66 AACAAAA
45411157 AT
1 AT
45411159 AAAAACATCA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 9 0.13
73 60 0.87
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (72 bp):
ATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAA
AACAAAA
Found at i:45423760 original size:27 final size:27
Alignment explanation
Indices: 45423730--45423785 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
45423720 TATCAAAAGT
45423730 ATGTACGTAATATAGAGTTAAAAATAC
1 ATGTACGTAATATAGAGTTAAAAATAC
45423757 ATGTACGTAATATAGAGTTAAAAATAC
1 ATGTACGTAATATAGAGTTAAAAATAC
45423784 AT
1 AT
45423786 ACATAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.30
Consensus pattern (27 bp):
ATGTACGTAATATAGAGTTAAAAATAC
Found at i:45423836 original size:21 final size:21
Alignment explanation
Indices: 45423803--45423875 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 21
45423793 GTAGTTATTA
45423803 AAAATATAT-ATAATATA-AT
1 AAAATATATAATAATATATAT
*
45423822 AAAATATATGAATAATAGGATAT
1 AAAATATAT-AATAATA-TATAT
*
45423845 AAAAATATATACATAATATATAA
1 -AAAATATATA-ATAATATATAT
45423868 AAAATATA
1 AAAATATA
45423876 CTATTTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 9 0.20
21 6 0.13
22 9 0.20
23 6 0.13
24 15 0.33
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (21 bp):
AAAATATATAATAATATATAT
Found at i:45424084 original size:24 final size:24
Alignment explanation
Indices: 45424032--45424086 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
45424022 GTATAACAAT
*
45424032 GATAAAAAAAATAATAATAGTGAAA
1 GATAATAAAAATAATAATAG-GAAA
*
45424057 -ATAATAAATATAATAATA-GAAA
1 GATAATAAAAATAATAATAGGAAA
45424079 CGATAATA
1 -GATAATA
45424087 CTATATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.15
24 22 0.85
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.24
Consensus pattern (24 bp):
GATAATAAAAATAATAATAGGAAA
Found at i:45424109 original size:22 final size:24
Alignment explanation
Indices: 45424084--45424128 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
45424074 AGAAACGATA
*
45424084 ATAC-TATATAA-AAAGTATATAT
1 ATACATATATAATAAAATATATAT
45424106 ATACATATATAATAAAATATATA
1 ATACATATATAATAAAATATATA
45424129 CTAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 7 0.35
24 9 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATACATATATAATAAAATATATAT
Found at i:45424128 original size:26 final size:25
Alignment explanation
Indices: 45424091--45424176 Score: 65
Period size: 28 Copynumber: 3.4 Consensus size: 25
45424081 ATAATACTAT
45424091 ATAAAA-AGTATATATATACATATATA
1 ATAAAATA-TATATATATACATA-ATA
45424117 ATAAAATATATACTAATATTA-ATAATGA
1 ATAAAATATATA-T-ATA-TACATAAT-A
*
45424145 ATATAATAT-TATA-ATAC-TAATA
1 ATAAAATATATATATATACATAATA
45424167 ATAACAATAT
1 ATAA-AATAT
45424177 GAAATTAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 1 0.02
25 1 0.02
26 11 0.22
27 6 0.12
28 15 0.29
29 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAAATATATATATATACATAATA
Found at i:45424135 original size:20 final size:21
Alignment explanation
Indices: 45424102--45424141 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45424092 TAAAAAGTAT
45424102 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
45424122 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
45424142 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:45424175 original size:23 final size:23
Alignment explanation
Indices: 45424081--45424176 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 23
45424071 AATAGAAACG
*
45424081 ATAATACTATATAA-AAAGTA-T
1 ATAATACTATATAATAAAATATT
45424102 ATATATACATATATAATAAAATATAT
1 ATA-ATAC-TATATAATAAAATAT-T
* *
45424128 ACTAATATTAATAATGAATATAATATT
1 A-TAATACT-AT-AT-AATAAAATATT
45424155 ATAATACTA-ATAATAACAATAT
1 ATAATACTATATAATAA-AATAT
45424177 GAAATTAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
21 3 0.05
22 8 0.13
23 14 0.23
24 5 0.08
25 2 0.03
26 13 0.22
27 6 0.10
28 9 0.15
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (23 bp):
ATAATACTATATAATAAAATATT
Found at i:45424175 original size:28 final size:29
Alignment explanation
Indices: 45424144--45424199 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
45424134 ATTAATAATG
* *
45424144 AATAT-AATATTATAAT-ACTAATAATAAC
1 AATATGAA-ATTAAAATAACTAAAAATAAC
45424172 AATATGAAATTAAAATAACTAAAAATAA
1 AATATGAAATTAAAATAACTAAAAATAA
45424200 TACCATATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (29 bp):
AATATGAAATTAAAATAACTAAAAATAAC
Found at i:45424289 original size:18 final size:18
Alignment explanation
Indices: 45424260--45424305 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
45424250 GACATAAAAA
*
45424260 AATAATAGTATT-GATAAT
1 AATAATAATATTAGA-AAT
*
45424278 ATTAATAATATTAGAAAT
1 AATAATAATATTAGAAAT
45424296 AATAATAATA
1 AATAATAATA
45424306 ATACTTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (18 bp):
AATAATAATATTAGAAAT
Found at i:45426674 original size:46 final size:46
Alignment explanation
Indices: 45426621--45426796 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
45426611 TATTTGGGCA
45426621 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** * *
45426667 TCCGAACTCGTTGAGTTGAGTTCGAGTT-GGTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
45426712 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
45426760 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45426797 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.58
47 25 0.24
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45426776 original size:93 final size:93
Alignment explanation
Indices: 45426617--45426787 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
45426607 GGGATATTTG
*** *
45426617 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAACCCGAACTCATTGAG
*
45426682 TTGAGTTCGAGTTGGTGAGATGTAACTA
66 TTGAGTCCGAGTTGGTGAGATGTAACTA
* * *
45426710 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAACCCGAACTCATTGAG
45426775 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
45426788 CGCTTATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAACCCGAACTCATTGAG
TTGAGTCCGAGTTGGTGAGATGTAACTA
Found at i:45431474 original size:26 final size:26
Alignment explanation
Indices: 45431437--45431546 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
45431427 TGATACAAAT
45431437 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
45431463 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
45431489 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
45431515 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
45431541 TGATAA
1 TGATAA
45431547 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:45431494 original size:52 final size:52
Alignment explanation
Indices: 45431437--45431546 Score: 220
Period size: 52 Copynumber: 2.1 Consensus size: 52
45431427 TGATACAAAT
45431437 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
45431489 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
45431541 TGATAA
1 TGATAA
45431547 GAATTTCATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:45434457 original size:29 final size:30
Alignment explanation
Indices: 45434406--45434467 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
45434396 ACTTATTTTA
45434406 TTGTTAATTTTGTTATTATTTTAAAGGAAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
* *
45434436 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGAAT
45434465 TTG
1 TTG
45434468 CTTATTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.26, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGAAT
Found at i:45437437 original size:20 final size:21
Alignment explanation
Indices: 45437414--45437459 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
45437404 ATAAGAAATT
*
45437414 TAATTAT-AT-AAATATTTTTC
1 TAATTATAATGAAAT-TTTTTA
45437434 TAATTATAATGAAATTTTTTA
1 TAATTATAATGAAATTTTTTA
45437455 TAATT
1 TAATT
45437460 TTAACTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TAATTATAATGAAATTTTTTA
Found at i:45438280 original size:46 final size:46
Alignment explanation
Indices: 45438228--45438320 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
45438218 TTTTATAACA
* *
45438228 TATACTAATTTGATATCTGAATTAAA-TGTACTTAATAATATTATTT
1 TATACTAATTTGATATCCGAATTAAATTG-ACTTAAGAATATTATTT
*
45438274 TATACTAATTTGATATCCGAATTAAATTGGCTTAAGAATATTATTT
1 TATACTAATTTGATATCCGAATTAAATTGACTTAAGAATATTATTT
45438320 T
1 T
45438321 CAAAATTCGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 41 0.95
47 2 0.05
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.46
Consensus pattern (46 bp):
TATACTAATTTGATATCCGAATTAAATTGACTTAAGAATATTATTT
Found at i:45440760 original size:9 final size:9
Alignment explanation
Indices: 45440746--45440773 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
45440736 TCCAGAAAAG
45440746 AAATTTATC
1 AAATTTATC
45440755 AAATTTATC
1 AAATTTATC
45440764 AAATTTATC
1 AAATTTATC
45440773 A
1 A
45440774 CTCCAATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (9 bp):
AAATTTATC
Found at i:45441523 original size:48 final size:48
Alignment explanation
Indices: 45441471--45441612 Score: 178
Period size: 48 Copynumber: 3.0 Consensus size: 48
45441461 GCCTCCTGTG
** *
45441471 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTACGCCATCAATC
1 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
* * *
45441519 CATGAACCTCCAAAGAAGCCTCCAATGTATAAACCTAAACCACCACTC
1 CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
* * * *
45441567 CATGAACTTCCAAAGAAGCCACCGA-TTCATGAACCTAAACCACCAA
1 CATGAACTTCCAAAGAAGCCTCCAACGT-ATAAACCTAAACCACCAA
45441613 AGCCACCAGT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 80 0.99
ACGTcount: A:0.39, C:0.34, G:0.10, T:0.17
Consensus pattern (48 bp):
CATGAACTTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCAATC
Found at i:45441728 original size:177 final size:177
Alignment explanation
Indices: 45441521--45441868 Score: 561
Period size: 177 Copynumber: 2.0 Consensus size: 177
45441511 CATCAATCCA
* *
45441521 TGAACCTCCAAAGAAGCCTCCAATGTATAAACCTAAACCACCACTCCATGAACTTCCAAAGAAGC
1 TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
* * *
45441586 CACCGATTCATGAACCTAAACCACCAAAGCCACCAGTTCACGAACCTCCAAAGAAAGAGAAACCA
66 CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
* * *
45441651 GAACACAAGCCACCAATATATGAACCTCCTAAGAAACCACCAGTCCG
131 GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACCAGTCCG
* * *
45441698 TGAACCTCCAAAGAAGCCTCCAGCGTATAAACCTAAACCACCAGTTCATGAACCTCCAAAGAAGC
1 TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
*
45441763 CACCGATGCATGAATCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
66 CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
* * *
45441828 GAACCCAAGCCACCAGTTTATGAACATCCAAAAAAACCACC
131 GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACC
45441869 TTCTGGTCAC
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
177 156 1.00
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.13
Consensus pattern (177 bp):
TGAACCTCCAAAGAAGCCTCCAACGTATAAACCTAAACCACCACTCCATGAACCTCCAAAGAAGC
CACCGATGCATGAACCTAAACCACCAAAGCCACCAATCCACGAACCTCCAAAGAAAGAGAAACCA
GAACACAAGCCACCAATATATGAACATCCAAAAAAACCACCAGTCCG
Found at i:45441782 original size:48 final size:47
Alignment explanation
Indices: 45441684--45441788 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 47
45441674 ACCTCCTAAG
* *
45441684 AAACCACCAGTCCGTGAACCTCCAAAGAAGCCTCCAGCGTATAAACCT
1 AAACCACCAGTCCATGAACCTCCAAAGAAGCCACCAGCG-ATAAACCT
* * *
45441732 AAACCACCAGTTCATGAACCTCCAAAGAAGCCACCGATGC-ATGAATCT
1 AAACCACCAGTCCATGAACCTCCAAAGAAGCCACC-A-GCGATAAACCT
45441780 AAACCACCA
1 AAACCACCA
45441789 AAGCCACCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 47 0.94
49 1 0.02
50 2 0.04
ACGTcount: A:0.38, C:0.34, G:0.13, T:0.14
Consensus pattern (47 bp):
AAACCACCAGTCCATGAACCTCCAAAGAAGCCACCAGCGATAAACCT
Found at i:45443495 original size:16 final size:15
Alignment explanation
Indices: 45443474--45443521 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
45443464 GATGTGAATA
45443474 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
45443490 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
45443505 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
45443521 A
1 A
45443522 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:45443504 original size:8 final size:8
Alignment explanation
Indices: 45443470--45443521 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
45443460 CAATGATGTG
*
45443470 AATAATAA
1 AATATTAA
45443478 AATATATAA
1 AATAT-TAA
45443487 AATA-TAA
1 AATATTAA
45443494 AATATTAA
1 AATATTAA
*
45443502 AATATCAA
1 AATATTAA
*
45443510 AATATTAG
1 AATATTAA
45443518 AATA
1 AATA
45443522 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:45443521 original size:24 final size:24
Alignment explanation
Indices: 45443469--45443525 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
45443459 ACAATGATGT
*
45443469 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
45443493 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
45443517 GAATAATAA
1 GAATAATAA
45443526 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:45443709 original size:25 final size:25
Alignment explanation
Indices: 45443675--45443739 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
45443665 CGTGATAATA
* *
45443675 TTAAGAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
45443700 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
45443723 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
45443740 GATAACATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 14 0.38
23 3 0.08
25 20 0.54
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:45443798 original size:25 final size:25
Alignment explanation
Indices: 45443769--45443906 Score: 78
Period size: 25 Copynumber: 5.6 Consensus size: 25
45443759 ATATATATAT
45443769 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* *
45443794 ATATATAAATAAAATAGTA-TAAA-
1 ATATATAAATAATATAATATTAAAG
* *
45443817 ATATATATATATATACGTAATA-TAGA-
1 ATATATAAATA-ATA--TAATATTAAAG
*
45443843 ATTTA-AAAT-ATACCTAGTATATTAAAAG
1 ATATATAAATAATA--TA--ATATT-AAAG
*
45443871 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
45443894 AAATAT-AATAATA
1 ATATATAAATAATA
45443907 ACAAAAAAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
23 26 0.29
24 10 0.11
25 28 0.31
26 12 0.13
27 6 0.07
28 4 0.04
29 3 0.03
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:45443799 original size:16 final size:17
Alignment explanation
Indices: 45443761--45443823 Score: 53
Period size: 16 Copynumber: 3.8 Consensus size: 17
45443751 GAAAAAAAAT
*
45443761 ATATATATATATATAAAT
1 ATATATA-ATATATAAAG
45443779 A-ATATAATAT-TAAAG
1 ATATATAATATATAAAG
*
45443794 ATATATAA-ATA-AAAT
1 ATATATAATATATAAAG
*
45443809 AGTATAAAATATATA
1 A-TATATAATATATA
45443824 TATATATACG
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
15 11 0.30
16 16 0.43
17 8 0.22
18 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
ATATATAATATATAAAG
Found at i:45444454 original size:30 final size:31
Alignment explanation
Indices: 45444384--45444528 Score: 183
Period size: 30 Copynumber: 4.8 Consensus size: 31
45444374 TAGGTACAAG
* * *
45444384 TGGTGGTGGAGCAA-GTGTGGTTAGTGAAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* ** * *
45444414 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
45444444 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
45444474 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
45444504 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGT
45444529 TGAGAAAAGT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 2 0.02
30 101 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.28
Consensus pattern (31 bp):
TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
Found at i:45445304 original size:15 final size:14
Alignment explanation
Indices: 45445275--45445337 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
45445265 GAGTTGATTT
* *
45445275 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
45445289 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
45445304 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
* *
45445318 TT-AAAAATAGAAT
1 TTGAAAAACAGAAA
45445331 TTGAAAA
1 TTGAAAA
45445338 GACCTCAGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
13 10 0.24
14 19 0.46
15 12 0.29
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:45445310 original size:13 final size:13
Alignment explanation
Indices: 45445294--45445337 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
45445284 ATAAATTGAA
45445294 AAAACAGAAATTG
1 AAAACAGAAATTG
*
45445307 AAAAGCAGAAATTA
1 AAAA-CAGAAATTG
* *
45445321 AAAATAGAATTTG
1 AAAACAGAAATTG
45445334 AAAA
1 AAAA
45445338 GACCTCAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.18
Consensus pattern (13 bp):
AAAACAGAAATTG
Found at i:45445454 original size:75 final size:77
Alignment explanation
Indices: 45445360--45445640 Score: 412
Period size: 77 Copynumber: 3.7 Consensus size: 77
45445350 TGGCCCGAGA
* *
45445360 CTCAACTCACCTTTCGCAATATGAGTTGA-T-TTTTGAAAAGCAGAAATTGAAAA-CGCCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
** **
45445422 GTGTGACCCGAGG
65 ACGTGACCAAAGG
45445435 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
*
45445500 CGTGAGCAAAGG
66 CGTGACCAAAGG
*
45445512 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
*
45445577 CGTGAGCAAAGG
66 CGTGACCAAAGG
* *
45445589 CTCAACTCACTTCTCGCAATATGAGTTGA-T-TTTTGAAAAACAGAAATT-AAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
45445641 GGCTCAACTC
Statistics
Matches: 192, Mismatches: 11, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
74 4 0.02
75 45 0.23
76 2 0.01
77 140 0.73
78 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (77 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
CGTGACCAAAGG
Found at i:45445609 original size:154 final size:149
Alignment explanation
Indices: 45445360--45446580 Score: 424
Period size: 154 Copynumber: 7.7 Consensus size: 149
45445350 TGGCCCGAGA
* * * **
45445360 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAACGCCTCAGCGTG
1 CTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCACG
** *
45445425 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
66 TGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAACAGAAATT-AAAA
45445490 TAGCTCAGCACGTGAGCAAAGG
128 TAGCTCAGCACGTGAGCAAAGG
45445512 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
1 CTCAACTCACCTCTCACAATATGAGTTGA-T-TTTTGAAAAGCAGAAATTGAAAA-AGCCTCAGC
* *
45445576 ACGTGAGCAAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
63 ACGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
* * * ***
45445641 -GGCTCAACTCACTTCTCTCAATATGAG
128 TAGCTC-A-GCACGT-GAGCAA-A-G-G
* * ** * **** * * ** *** * * *
45445668 TTGATTTTTGAAAAGTAAAAATTAAAAACAGA-GTTTG-AAAGACAGAATTTGAAAATA-CCTCG
1 CTCA--ACTCACCTCTCACAA-TATGAGTTGATTTTTGAAAAG-CAGAAATTGAAAA-AGCCTCA
* * *
45445730 GCATGTGACTC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAAGCAGAAATT
61 GCACGTGAC-CAAAGGCTCAACTCACCTCTCGCAATATGAGTTG--A-TTT------------TT
* ** **
45445794 GGAAAAAAACAGAAATTGAAAATACCTCAG--CGTGTCCTGAGG
110 -G-AAA-AACAGAAATT-AAAATAGCTCAGCACGTGAGCAAAGG
* * * * * *
45445836 CTAAATTCACCTCTCACAATATGAGTTGATTTATTTTTTTGAAATTAAAACACAAAAATCGACAA
1 CTCAACTCACCTCTCACAATATGAGTTG----A--TTTTTG-----AAAA-GCAGAAATTGAAAA
** * ** *
45445901 TTCCTCAG--CGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAG
54 AGCCTCAGCACGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
* * ** **
45445964 AAATTGAAATTACCTCAGCA--TGTCCTGAGG
119 AAATT-AAAATAGCTCAGCACGTGAGCAAAGG
*
45445994 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAACAGAAATTGAAAATA-CCT
1 CTCAACTCACCTCTCACAATATGAGTTGATTTTTG--AAA-AG---CAGAAATTGAAAA-AGCCT
* * * * * *
45446057 CAGCACGTGAGCC-GAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTG-ACAATAGAA
59 CAGCACGTGA-CCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAA
* * * * ** **
45446120 ATTGTAATTACCTCA--ACATGTCCCGAGG
121 ATT-AAAATAGCTCAGCACGTGAGCAAAGG
* * * *
45446148 CTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAACACAAAAATTGAC
1 CTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCAGAAATTG------AAAAA--G-C
* ** * **
45446213 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
57 -CT-CAGCA-CGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
* ** **
45446278 AAATTTAAAAATACCTCAG--CGTGTCCTGAGG
119 AAA-TT-AAAATAGCTCAGCACGTGAGCAAAGG
*
45446309 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAACAGAAATTG-
1 CTCAACTCACCTCTCACAATATGAGTTGA--TTTTT--G---A-AAA--G-----CAGAAATTGA
* * *
45446373 AAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
51 AAAAG-CCTCAGCACGTGA-CCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * * ** **
45446437 AATAGAAATTGAAATTACCTCAG--CGTGTCCCGAGG
114 AACAGAAATT-AAAATAGCTCAGCACGTGAGCAAAGG
* * * *
45446472 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAG--
1 CTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGAAAAGCAGAAATTGAAAAA-GCCTCAGCA
* **
45446535 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
64 CGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
45446581 TTTTTACGAA
Statistics
Matches: 838, Mismatches: 129, Indels: 208
0.71 0.11 0.18
Matches are distributed among these distances:
147 2 0.00
148 44 0.05
149 17 0.02
150 14 0.02
151 26 0.03
152 50 0.06
153 43 0.05
154 128 0.15
155 21 0.03
156 63 0.08
157 2 0.00
158 65 0.08
159 18 0.02
160 15 0.02
161 85 0.10
162 6 0.01
163 58 0.07
164 51 0.06
165 10 0.01
166 8 0.01
167 3 0.00
168 4 0.00
169 9 0.01
170 1 0.00
171 3 0.00
172 7 0.01
173 6 0.01
174 11 0.01
175 6 0.01
176 45 0.05
178 17 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (149 bp):
CTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCACG
TGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAATAG
CTCAGCACGTGAGCAAAGG
Found at i:45445690 original size:54 final size:54
Alignment explanation
Indices: 45445584--45445694 Score: 186
Period size: 54 Copynumber: 2.1 Consensus size: 54
45445574 GCACGTGAGC
*
45445584 AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTA
1 AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
* **
45445638 AAAGGCTCAACTCACTTCTCTCAATATGAGTTGATTTTTGAAAAGTAAAAATTA
1 AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
45445692 AAA
1 AAA
45445695 ACAGAGTTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.31
Consensus pattern (54 bp):
AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
Found at i:45445814 original size:16 final size:17
Alignment explanation
Indices: 45445781--45445815 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
45445771 TGATATTTTG
*
45445781 AAAAGCAGAAATTGGAA
1 AAAAACAGAAATTGGAA
45445798 AAAAACAGAAATT-GAA
1 AAAAACAGAAATTGGAA
45445814 AA
1 AA
45445816 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAACAGAAATTGGAA
Found at i:45445994 original size:73 final size:73
Alignment explanation
Indices: 45445899--45446361 Score: 360
Period size: 74 Copynumber: 6.0 Consensus size: 73
45445889 AAAAATCGAC
* * *
45445899 AATT-CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
45445963 GAAATTGA
66 GAAATTGA
*
45445971 AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A
45446035 GAAACAGAAATTGA
61 -AAACAGAAATTGA
* ** * * * *
45446049 AAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTG-AC
1 AATTACCTCAGCA--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
* *
45446113 AATAGAAATTGT
62 AACAGAAATTGA
* *
45446125 AATTACCTCAACATGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
*
45446190 TAAATTGA
66 GAAATTGA
* *** * * * *
45446198 AA-CACAAAAATTGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AATTAC-CTCA--G-C-ATGTCC-C-GAG-G-CTC-A---AC---TCACCTCTCGCAATATGAGT
*
45446261 TGATTTTTGAAAAACAGAAATTTAA
50 TGATTTTTGAAAAACAGAAA-TTGA
* * * * **
45446286 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAAC
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAC
45446351 AGAAATTGA
65 AGAAATTGA
45446360 AA
1 AA
45446362 AACAGAAATT
Statistics
Matches: 306, Mismatches: 52, Indels: 64
0.73 0.12 0.15
Matches are distributed among these distances:
72 17 0.06
73 56 0.18
74 61 0.20
75 14 0.05
76 25 0.08
77 6 0.02
78 27 0.09
79 1 0.00
80 36 0.12
81 3 0.01
82 1 0.00
83 7 0.02
84 2 0.01
85 3 0.01
86 1 0.00
87 38 0.12
88 6 0.02
89 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (73 bp):
AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
GAAATTGA
Found at i:45446247 original size:241 final size:237
Alignment explanation
Indices: 45445957--45446761 Score: 876
Period size: 241 Copynumber: 3.3 Consensus size: 237
45445947 TGATTTTTGA
* * *
45445957 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
45446022 ATTTTGACAAACAGAAACAGAAA-TTGAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACT
66 ATTTTG----A-A-AAACAGAAATTTAAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACC
* * * ** * *
45446085 TCTTGCAATATGAATTGATTTTTTT-G-AC-AA-T-AGAAATTGTAATTACCTCAACATGT-CCC
122 TCTCGCAATATGAGTTGATTTTTTTAGAACAAATTAAGAAATTGAAAAGACCTCAGCATGTAGCC
*
45446144 GAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG
187 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACA-AAATTG
*
45446197 AAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAA-ACAGAAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
45446261 TGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
64 TGA-TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
45446326 AATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTG
128 AATATGAGTTGATTTTTTTA-GAAC--AAATT-----A-AGAAATTGAAAAGACCTCAGCATGT-
45446391 AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AC-AAA-T-
183 AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTG
*
45446440 -----AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
45446500 ATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 A--TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
45446565 ATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATG
129 ATATGAGTTGA---TTTTTTTA-GAAC--AAATT-----A-AGAAATTGAAAAGACCTCAGCATG
* *
45446630 TGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGG
182 T-AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACA-AAATT-G
* * * *
45446692 AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
45446757 ATTTT
66 ATTTT
45446762 TGGAACAGAA
Statistics
Matches: 499, Mismatches: 24, Indels: 69
0.84 0.04 0.12
Matches are distributed among these distances:
234 2 0.00
235 41 0.08
236 11 0.02
237 72 0.14
238 77 0.15
240 3 0.01
241 146 0.29
242 8 0.02
243 6 0.01
244 1 0.00
245 3 0.01
247 3 0.01
249 24 0.05
250 1 0.00
251 40 0.08
255 4 0.01
257 57 0.11
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (237 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTAGAACAAATTAAGAAATTGAAAAGACCTCAGCATGTAGCCGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTG
Found at i:45446334 original size:74 final size:74
Alignment explanation
Indices: 45446213--45446580 Score: 373
Period size: 74 Copynumber: 4.8 Consensus size: 74
45446203 AAAAATTGAC
* *
45446213 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
1 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
45446278 AAATTTAAA
66 AAATTTAAA
* **
45446287 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACA
1 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACA
*
45446352 GAAATTGAAAA
65 GAAATT-TAAA
* ** * * * * *
45446363 ACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-A-TACCT---CAG-CGT--GTCCTGAG-GCTC-A-ACT-----CACCTCTCGCAATATGAGTT
* * *
45446426 GATTTTTGACAAATAGAAA-TTGAA
50 GATTTTTGAAAAACAGAAATTTAAA
* *
45446450 ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACA
1 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACA
45446515 GAAATTTAAA
65 GAAATTTAAA
45446525 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
45446581 TTTTTACGAA
Statistics
Matches: 238, Mismatches: 34, Indels: 44
0.75 0.11 0.14
Matches are distributed among these distances:
73 22 0.09
74 69 0.29
75 69 0.29
76 4 0.02
77 1 0.00
78 4 0.02
79 4 0.02
80 4 0.02
81 4 0.02
82 4 0.02
83 5 0.02
84 4 0.02
85 4 0.02
87 3 0.01
88 1 0.00
89 14 0.06
90 22 0.09
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (74 bp):
AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG
AAATTTAAA
Found at i:45446367 original size:14 final size:14
Alignment explanation
Indices: 45446348--45446376 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45446338 TTTTTTTACG
45446348 AACAGAAATTGAAA
1 AACAGAAATTGAAA
45446362 AACAGAAATTGAAA
1 AACAGAAATTGAAA
45446376 A
1 A
45446377 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:45446419 original size:90 final size:88
Alignment explanation
Indices: 45446267--45446450 Score: 264
Period size: 90 Copynumber: 2.1 Consensus size: 88
45446257 GAGTTGATTT
* *
45446267 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
45446332 AGTTGATTTTTTTACGAACAGAAA
66 AGTTGA-TTTTTGACAAACAGAAA
*
45446356 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
*
45446419 ATGAGTTGATTTTTGACAAATAGAAA
63 ATGAGTTGATTTTTGACAAACAGAAA
45446445 TTGAAA
1 TTGAAA
45446451 TTACCTCAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
88 14 0.16
89 34 0.40
90 36 0.42
91 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGACAAACAGAAA
Found at i:45446455 original size:478 final size:475
Alignment explanation
Indices: 45445798--45446763 Score: 1202
Period size: 478 Copynumber: 2.0 Consensus size: 475
45445788 GAAATTGGAA
* *
45445798 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTAAATTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTAAACTCACCTCTCACAATATGAGTT
*** * ** *
45445863 GATTTATTTTTTTGAAATTAAAACACAAAAATCGACAATTCCTCAGCGTGCCCCGAGGCTCAACT
66 GATTTATTTTACAGAAATTAAAACACAAAAATCGAAAAGACCTCAGCGTGACCCGAGGCTCAACT
* *
45445928 CACCTCTTGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAG
131 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAG
*
45445993 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAACAGAAA-TTGAAAATACCT
196 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT--CAAA-A-AAACAGAAATTTAAAAATACCT
* *
45446057 CAGCACGTGAGCC-GAGGCTCAACTCACTTCTTGCAATATGAATTGA-TTTTTTT-G-AC-AA-T
257 CAG--CGTG-GCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTTAGAACAAATT
* ** *
45446116 -AGAAATTGTAATTACCTCAACATGT-CCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-T
319 AAGAAATTGAAAAGACCTCAACATGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
45446178 TTTTGAAAAACATAAATT-GAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACT
384 TTTTGAAAAACAGAAATTGGAAA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACT
45446242 CACCTCTCGCAATATGAGTTGATTTTTG
448 CACCTCTCGCAATATGAGTTGATTTTTG
* *
45446270 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTAAACTCACCTCTCACAATATGAGT
* * *
45446335 TGATTT-TTTTACGAACAGAAATTGAAAA-ACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
65 TGATTTATTTT----ACAGAAATT-AAAACACAAAAATCGAAAAGACCTCAGC--GTGACCCGAG
* * *
45446398 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAGAAATTGAAATTACCTCAGCGT
123 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCAT
***
45446463 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAAT
188 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCAAAAAAACAGAAATTTAAAAAT
* *
45446528 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACA
253 ACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA--TTTTTTTTA-GAAC-
* * *
45446593 GAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCA
314 -AAATT-----A-AGAAATTGAAAAGACCTCAACATGT-ACCCGAGGCTCAACTCACCTCTCGCA
* * * *
45446658 ATATGAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCC
371 ATATGAGTTGA-TTTTTTGAAAAACAGAAATTGGAAAACAAAAATTGAAAATACCTCAGCGTGCC
* *
45446723 CTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG
435 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
45446764 GAACAGAATT
Statistics
Matches: 420, Mismatches: 42, Indels: 42
0.83 0.08 0.08
Matches are distributed among these distances:
472 17 0.04
473 89 0.21
474 9 0.02
475 15 0.04
476 32 0.08
477 4 0.01
478 111 0.26
479 2 0.00
482 2 0.00
483 1 0.00
490 21 0.05
492 33 0.08
494 80 0.19
495 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (475 bp):
AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTAAACTCACCTCTCACAATATGAGTT
GATTTATTTTACAGAAATTAAAACACAAAAATCGAAAAGACCTCAGCGTGACCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTCAAAAAAACAGAAATTTAAAAATACCTCAGC
GTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTTAGAACAAATTAAGAAAT
TGAAAAGACCTCAACATGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAACAGAAATTGGAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTG
Found at i:45446486 original size:73 final size:73
Alignment explanation
Indices: 45446356--45446580 Score: 342
Period size: 75 Copynumber: 3.0 Consensus size: 73
45446346 CGAACAGAAA
* **
45446356 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
45446421 GAGTTGATTT
64 GAGTTGATTT
* * *
45446431 TTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
45446496 GTTGATTTT
66 GTTGA-TTT
* *
45446505 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
45446570 AGTTGATTT
65 AGTTGATTT
45446579 TT
1 TT
45446581 TTTTTACGAA
Statistics
Matches: 137, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
73 38 0.28
74 20 0.15
75 79 0.58
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:45446501 original size:163 final size:159
Alignment explanation
Indices: 45445804--45446763 Score: 905
Period size: 161 Copynumber: 6.0 Consensus size: 159
45445794 GGAAAAAAAC
* * * *
45445804 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTAAATTCACCTCTCACAATATGAGTTGATTTA
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-
**** * * * *
45445869 TTT---TTTTGAAATT-AAAACACAAAAATCGACAATTCCTCAGCGTGCCCCGAGGCTCAACTCA
65 TTTAAGAACAGAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCA
* * *
45445930 CCTCTTGCAATATGAGTTGATTTTTGAAAAAC
128 CCTCTCGCAATATGAGTTGATTTTTGACAAAT
* * *
45445962 AGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
45446025 TT--G-ACA-AACA--G--AAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTC
66 TTAAGAACAGAA-ATTGAAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCGAGGCTCAACTC
* * *
45446082 ACTTCTTGCAATATGAATTGATTTTTTTGAC-AAT
127 ACCTCTCGCAATATGAGTTGA--TTTTTGACAAAT
* * * * *
45446116 AGAAATTGTAATTACCTCAACATGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * *
45446181 TGAAAAACATAAATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACC
66 TTAAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACC
* *
45446246 TCTCGCAATATGAGTTGATTTTTGAAAAAC
130 TCTCGCAATATGAGTTGATTTTTGACAAAT
* *
45446276 AGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* * *
45446341 TTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACT
64 TTTTAAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-CCCGAGGCTCAACT
45446406 CACCTCTCGCAATATGAGTTGATTTTTGACAAAT
126 CACCTCTCGCAATATGAGTTGATTTTTGACAAAT
*
45446440 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
45446503 TT-----------TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
66 TTAAGAACAGAAATTGAAAAACAGAAA-TTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCAC
45446557 CTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAAATT
129 CTCTCGCAATATGAGTTGA-----TTTTT--G-AC--AAA-T
* ** *
45446599 GAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGA
1 -------AGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
45446664 GTTGATTTTTTTGAAGAGCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGG
57 GTTGA-TTTTTT-AAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCC-GAGG
*
45446729 CTCAACTCACCTCTCGTAATATGAGTTGATTTTTG
119 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
45446764 GAACAGAATT
Statistics
Matches: 672, Mismatches: 71, Indels: 101
0.80 0.08 0.12
Matches are distributed among these distances:
148 37 0.06
149 14 0.02
150 14 0.02
151 18 0.03
152 2 0.00
153 42 0.06
154 61 0.09
155 12 0.02
156 6 0.01
158 59 0.09
159 12 0.02
160 13 0.02
161 86 0.13
162 39 0.06
163 74 0.11
164 53 0.08
166 19 0.03
168 37 0.06
171 4 0.01
175 1 0.00
177 5 0.01
181 2 0.00
182 50 0.07
183 12 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (159 bp):
AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTAAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTGACAAAT
Found at i:45446561 original size:238 final size:243
Alignment explanation
Indices: 45446142--45446762 Score: 880
Period size: 241 Copynumber: 2.5 Consensus size: 243
45446132 TCAACATGTC
* * * * *
45446142 CCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAACACAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TAGAGCA-AAATT-----A-AGAA
45446207 ATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
58 ATTGA-AATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
45446271 AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
121 AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
45446336 GA-TTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
186 GATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
45446393 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-GA-C-AAA-T-AGAAATTGAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGAGCAAAATTAAGAAATTGAAA-
45446452 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGA
65 TACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGA
45446517 AATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
129 AATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45446582 TTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAG
192 TTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
*
45446634 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAGCAG
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT--AGAGCA-AAATT----A--AG
*
45446699 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT
56 AAATTG-AAATACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
45446763 GGAACAGAAT
Statistics
Matches: 339, Mismatches: 8, Indels: 40
0.88 0.02 0.10
Matches are distributed among these distances:
236 2 0.01
237 56 0.17
238 74 0.22
241 88 0.26
243 5 0.01
244 1 0.00
245 3 0.01
246 2 0.01
247 2 0.01
248 1 0.00
249 3 0.01
250 5 0.01
251 34 0.10
256 3 0.01
257 57 0.17
258 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (243 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAGAGCAAAATTAAGAAATTGAAAT
ACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAA
TTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
ACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
Found at i:45446607 original size:14 final size:14
Alignment explanation
Indices: 45446588--45446615 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45446578 TTTTTTTTAC
45446588 GAACAGAAATTGAA
1 GAACAGAAATTGAA
45446602 GAACAGAAATTGAA
1 GAACAGAAATTGAA
45446616 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:45446663 original size:93 final size:90
Alignment explanation
Indices: 45446509--45446762 Score: 359
Period size: 91 Copynumber: 2.8 Consensus size: 90
45446499 GATTTTTTGA
* *
45446509 AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
45446574 GATTTTTTTTTTACGAACAGAAATTG
65 GATTTTTTTTTGAAGAACAGAAATTG
* *
45446600 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
45446665 TTGA--TTTTTTTGAAGAGCAGAAATTGG
63 TTGATTTTTTTTTGAAGAACAGAAATT-G
* * *
45446692 AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
45446757 ATTTTT
66 ATTTTT
45446763 GGAACAGAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
89 37 0.26
91 59 0.41
92 11 0.08
93 38 0.26
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (90 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTTGAAGAACAGAAATTG
Found at i:45448313 original size:26 final size:26
Alignment explanation
Indices: 45448276--45448411 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
45448266 TGATACAAAT
* *
45448276 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
45448302 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
** *
45448328 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
45448354 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
45448380 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
45448406 TGATAA
1 TGATAA
45448412 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:45449925 original size:26 final size:26
Alignment explanation
Indices: 45449896--45449948 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
45449886 TTTACAGTTT
45449896 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
45449922 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
45449948 T
1 T
45449949 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:45450482 original size:137 final size:137
Alignment explanation
Indices: 45450196--45450482 Score: 511
Period size: 137 Copynumber: 2.1 Consensus size: 137
45450186 GAGTAGTCTC
45450196 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
45450261 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
45450326 ACTGTTA
131 ACTGTTA
* *
45450333 CCCAAATAGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
* * *
45450398 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAATGGCTCTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
45450463 ACTGTTA
131 ACTGTTA
**
45450470 CCTGAATGGGCTT
1 CCCAAATGGGCTT
45450483 AGGCCCAATA
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 142 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:45458248 original size:12 final size:12
Alignment explanation
Indices: 45458228--45458263 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
45458218 TGGGATATGC
*
45458228 AATGTATGAATG
1 AATGCATGAATG
45458240 AATGCATGAATG
1 AATGCATGAATG
45458252 AATGCATGAATG
1 AATGCATGAATG
45458264 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:45459851 original size:16 final size:15
Alignment explanation
Indices: 45459830--45459877 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
45459820 GATGTGAATA
45459830 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
45459846 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
45459861 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
45459877 A
1 A
45459878 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:45459860 original size:8 final size:8
Alignment explanation
Indices: 45459826--45459877 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
45459816 CAATGATGTG
*
45459826 AATAATAA
1 AATATTAA
45459834 AATATATAA
1 AATAT-TAA
45459843 AATA-TAA
1 AATATTAA
45459850 AATATTAA
1 AATATTAA
*
45459858 AATATCAA
1 AATATTAA
*
45459866 AATATTAG
1 AATATTAA
45459874 AATA
1 AATA
45459878 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:45459877 original size:24 final size:24
Alignment explanation
Indices: 45459825--45459881 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
45459815 ACAATGATGT
*
45459825 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
45459849 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
45459873 GAATAATAA
1 GAATAATAA
45459882 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:45460068 original size:23 final size:21
Alignment explanation
Indices: 45460029--45460090 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
45460019 CGTGATAATA
*
45460029 TTAAAATATGTACATAATATAGTG
1 TTAAAA-ATATACATAATATA--G
45460053 TTAAAAATATACATAATATAG
1 TTAAAAATATACATAATATAG
*
45460074 TTAAGATATATACATAA
1 TTAA-AAATATACATAA
45460091 GATAACATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 5 0.14
22 11 0.31
23 13 0.37
24 6 0.17
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (21 bp):
TTAAAAATATACATAATATAG
Found at i:45460141 original size:25 final size:25
Alignment explanation
Indices: 45460113--45460253 Score: 85
Period size: 25 Copynumber: 5.6 Consensus size: 25
45460103 AAAAAAATAT
45460113 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
45460138 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * * *
45460163 ATATATATATATATATACGTAATATAG
1 ATATATAAATA-ATATA-ATATTAAAG
*
45460190 A-ATTTAAAT-ATACCTAATATATTAAAAG
1 ATATATAAATAATA--T-A-ATATT-AAAG
*
45460218 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
45460241 AAATAT-AATAATA
1 ATATATAAATAATA
45460254 ACAAAAAAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
23 10 0.11
24 7 0.08
25 36 0.40
26 12 0.13
27 11 0.12
28 10 0.11
29 3 0.03
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:45460251 original size:23 final size:25
Alignment explanation
Indices: 45460115--45460253 Score: 76
Period size: 23 Copynumber: 5.5 Consensus size: 25
45460105 AAAAATATAT
*
45460115 ATATAAATAATATAATATT-AAAG-
1 ATATATATAATATAATATTAAAAGA
* * *
45460138 ATATATA-AATAAAATAGTATAA-A
1 ATATATATAATATAATATTAAAAGA
*
45460161 ATATATATATATATATATACGTAATATAGA
1 ATATATATA-ATATA-ATA-TTAA-A-AGA
* *
45460191 ATTTAAAT-ATACCTAATATATTAAAAGA
1 ATATATATAATA--T-A-ATATTAAAAGA
*
45460219 ATATATATAATATAATATTAAGA-A
1 ATATATATAATATAATATTAAAAGA
45460243 ATATA-ATAATA
1 ATATATATAATA
45460254 ACAAAAAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
22 9 0.10
23 21 0.23
24 7 0.08
25 12 0.13
26 4 0.04
27 4 0.04
28 13 0.14
29 5 0.05
30 11 0.12
31 5 0.05
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATATATATAATATAATATTAAAAGA
Found at i:45460808 original size:30 final size:30
Alignment explanation
Indices: 45460730--45460844 Score: 135
Period size: 30 Copynumber: 3.8 Consensus size: 30
45460720 TAGGTACAAG
*
45460730 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* ** * *
45460760 AGGTAATAGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
45460790 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGTGGAGT
*
45460820 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGT
45460845 TGACAAAAGT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
29 2 0.03
30 70 0.97
ACGTcount: A:0.21, C:0.04, G:0.47, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:45462380 original size:21 final size:21
Alignment explanation
Indices: 45462336--45462381 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
45462326 TATATAAGAA
* *
45462336 ATTTTAGTTTAACTTTTTTAG
1 ATTTTAGTTTAAATTTTTCAG
* *
45462357 ATTTTATTTTAAATTTTTCGG
1 ATTTTAGTTTAAATTTTTCAG
45462378 ATTT
1 ATTT
45462382 ATTCATTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.04, G:0.09, T:0.63
Consensus pattern (21 bp):
ATTTTAGTTTAAATTTTTCAG
Found at i:45465910 original size:29 final size:29
Alignment explanation
Indices: 45465877--45466035 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
45465867 GTGACGAGAT
45465877 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45465906 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45465935 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * * ***
45465964 CGGCACT-GGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
45465992 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
45466021 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
45466036 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
28 22 0.20
29 89 0.80
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45473950 original size:29 final size:29
Alignment explanation
Indices: 45473917--45474075 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
45473907 GTGACGAGAT
45473917 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45473946 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45473975 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * * ***
45474004 CGGCACT-GGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
45474032 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
45474061 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
45474076 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
28 22 0.20
29 89 0.80
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45474913 original size:16 final size:18
Alignment explanation
Indices: 45474880--45474914 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
45474870 AAATCACTAA
45474880 AAATAGTAGAAGTAAATT
1 AAATAGTAGAAGTAAATT
45474898 AAATAGT-GAA-TAAATT
1 AAATAGTAGAAGTAAATT
45474914 A
1 A
45474915 TGAAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 3 0.18
18 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (18 bp):
AAATAGTAGAAGTAAATT
Done.