Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 175 of 444
Found at i:48611741 original size:27 final size:28
Alignment explanation
Indices: 48611701--48611768 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
48611691 TTTAAAACCC
*
48611701 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48611727 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48611755 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48611769 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48616026 original size:27 final size:28
Alignment explanation
Indices: 48615986--48616053 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
48615976 TTTAAAACCC
*
48615986 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48616012 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48616040 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48616054 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48620313 original size:27 final size:28
Alignment explanation
Indices: 48620273--48620340 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
48620263 TTTAAAACCC
*
48620273 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48620299 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48620327 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48620341 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48626139 original size:33 final size:33
Alignment explanation
Indices: 48626097--48626163 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
48626087 ATGGCCTTCA
48626097 CATAGTACCACACTTGTGACCAAAGCTATCTTT
1 CATAGTACCACACTTGTGACCAAAGCTATCTTT
48626130 CATAGTACCACACTTGTGACCAAAGCTATCTTT
1 CATAGTACCACACTTGTGACCAAAGCTATCTTT
48626163 C
1 C
48626164 TTCATAAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (33 bp):
CATAGTACCACACTTGTGACCAAAGCTATCTTT
Found at i:48626194 original size:85 final size:83
Alignment explanation
Indices: 48626046--48626211 Score: 242
Period size: 85 Copynumber: 2.0 Consensus size: 83
48626036 GTGGCCTGCA
* **
48626046 CATAGTACCACCCTTGTGGTCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
1 CATAGTACCACACTTGTGACCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
48626111 TGTGACCAAAGCTATCTTT
66 TGTGACC-AAGCTATCTTT
* * * * *
48626130 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCATAAAGTGGCCTTCATATGGTACCACAC
1 CATAGTACCACACTTGTGACCAAAGCTA-CATTCTTCACAAAATGGCCTTCACATAGTACCACAC
48626195 TTGTGACCAAGCTATCT
65 TTGTGACCAAGCTATCT
48626212 CTTCTCAAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 34 0.47
85 39 0.53
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (83 bp):
CATAGTACCACACTTGTGACCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
TGTGACCAAGCTATCTTT
Found at i:48626239 original size:49 final size:51
Alignment explanation
Indices: 48626130--48626245 Score: 166
Period size: 49 Copynumber: 2.3 Consensus size: 51
48626120 AGCTATCTTT
48626130 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCATAAAGTGGCCTTCA
1 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCA-AAAGTGGCCTTCA
* *
48626182 TATGGTACCACACTTGTGACC-AAGCTATCTCTTC-TC-AAAGTGGCCTTCA
1 CATAGTACCACACTTGTGACCAAAGCTATCT-TTCTTCAAAAGTGGCCTTCA
*
48626231 CATAGTACCCCACTT
1 CATAGTACCACACTT
48626246 AAGTCACTAG
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
49 25 0.43
51 11 0.19
52 22 0.38
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (51 bp):
CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCAAAAGTGGCCTTCA
Found at i:48629415 original size:28 final size:28
Alignment explanation
Indices: 48629373--48629441 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
48629363 TTTAAAACCC
* *
48629373 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTATT
*
48629400 TAGGGGTAATTTCGGTAATTTTGCTATT
1 TAGGGGTAATTTCGGTAATTTTACTATT
48629428 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48629442 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.09, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTATT
Found at i:48631272 original size:19 final size:18
Alignment explanation
Indices: 48631235--48631278 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
48631225 ATACATACAG
48631235 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
48631252 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
48631271 TACTAATT
1 TAATAATT
48631279 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:48635235 original size:33 final size:33
Alignment explanation
Indices: 48635193--48635259 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
48635183 ATGGCCTTCA
48635193 CATAGTACCACACTTGTGACCAAAGCTATCTTT
1 CATAGTACCACACTTGTGACCAAAGCTATCTTT
48635226 CATAGTACCACACTTGTGACCAAAGCTATCTTT
1 CATAGTACCACACTTGTGACCAAAGCTATCTTT
48635259 C
1 C
48635260 TTCATAAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (33 bp):
CATAGTACCACACTTGTGACCAAAGCTATCTTT
Found at i:48635290 original size:85 final size:83
Alignment explanation
Indices: 48635142--48635307 Score: 242
Period size: 85 Copynumber: 2.0 Consensus size: 83
48635132 GTGGCCTGCA
* **
48635142 CATAGTACCACCCTTGTGGTCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
1 CATAGTACCACACTTGTGACCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
48635207 TGTGACCAAAGCTATCTTT
66 TGTGACC-AAGCTATCTTT
* * * * *
48635226 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCATAAAGTGGCCTTCATATGGTACCACAC
1 CATAGTACCACACTTGTGACCAAAGCTA-CATTCTTCACAAAATGGCCTTCACATAGTACCACAC
48635291 TTGTGACCAAGCTATCT
65 TTGTGACCAAGCTATCT
48635308 CTTCTCAAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 34 0.47
85 39 0.53
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (83 bp):
CATAGTACCACACTTGTGACCAAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACACT
TGTGACCAAGCTATCTTT
Found at i:48635335 original size:49 final size:51
Alignment explanation
Indices: 48635226--48635341 Score: 166
Period size: 49 Copynumber: 2.3 Consensus size: 51
48635216 AGCTATCTTT
48635226 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCATAAAGTGGCCTTCA
1 CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCA-AAAGTGGCCTTCA
* *
48635278 TATGGTACCACACTTGTGACC-AAGCTATCTCTTC-TC-AAAGTGGCCTTCA
1 CATAGTACCACACTTGTGACCAAAGCTATCT-TTCTTCAAAAGTGGCCTTCA
*
48635327 CATAGTACCCCACTT
1 CATAGTACCACACTT
48635342 AAGTCACTAG
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
49 25 0.43
51 11 0.19
52 22 0.38
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (51 bp):
CATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCAAAAGTGGCCTTCA
Found at i:48638509 original size:28 final size:28
Alignment explanation
Indices: 48638467--48638535 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
48638457 TTTAAAACCC
*
48638467 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
48638494 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
48638522 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48638536 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:48640360 original size:19 final size:18
Alignment explanation
Indices: 48640323--48640366 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
48640313 ATACATACAG
48640323 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
48640340 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
48640359 TACTAATT
1 TAATAATT
48640367 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:48642784 original size:28 final size:28
Alignment explanation
Indices: 48642740--48642807 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
48642730 TTTAAAACCC
48642740 TAGGGGT-A-TTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48642766 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48642794 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48642808 TGATCTACGC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 7 0.17
27 1 0.03
28 32 0.80
ACGTcount: A:0.18, C:0.10, G:0.28, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48644637 original size:19 final size:18
Alignment explanation
Indices: 48644600--48644643 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
48644590 ATACATACAG
48644600 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
48644617 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
48644636 TACTAATT
1 TAATAATT
48644644 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:48652261 original size:40 final size:40
Alignment explanation
Indices: 48652216--48652382 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48652206 CGGAATATAA
48652216 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48652256 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48652296 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48652336 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48652375 CCGGATAT
1 CCGGATAT
48652383 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48660256 original size:40 final size:40
Alignment explanation
Indices: 48660211--48660377 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48660201 CGGAATATAA
48660211 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48660251 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48660291 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48660331 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48660370 CCGGATAT
1 CCGGATAT
48660378 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48663333 original size:40 final size:39
Alignment explanation
Indices: 48663288--48663495 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
48663278 CGGAATACAA
*
48663288 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48663328 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48663368 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
48663408 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
48663448 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
48663488 CCGGATAT
1 CCGGATAT
48663496 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48663428 original size:80 final size:81
Alignment explanation
Indices: 48663288--48663493 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
48663278 CGGAATACAA
* * *
48663288 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
48663352 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
48663368 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
48663431 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
48663448 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
48663494 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:48671373 original size:40 final size:39
Alignment explanation
Indices: 48671328--48671534 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
48671318 CGGAATACAA
*
48671328 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48671368 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48671408 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
48671448 CCGGATGT-GTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
48671487 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
48671527 CCGGATAT
1 CCGGATAT
48671535 CATTCAATTG
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 4 0.03
39 28 0.20
40 106 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48671517 original size:79 final size:80
Alignment explanation
Indices: 48671328--48671533 Score: 222
Period size: 79 Copynumber: 2.6 Consensus size: 80
48671318 CGGAATACAA
* * *
48671328 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT
*
48671392 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
48671408 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACTAGCACAAAT
*
48671470 GGCCTTCGGGTCTTAAC
65 -GCCTTCGGGTATTAAC
** * * *
48671487 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
48671534 TCATTCAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 60 0.57
80 43 0.41
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:48676160 original size:16 final size:16
Alignment explanation
Indices: 48676135--48676168 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
48676125 GTAATAACAT
48676135 CTGGCAAGGAAGCATC
1 CTGGCAAGGAAGCATC
*
48676151 CTGGCGAGGAAGCATC
1 CTGGCAAGGAAGCATC
48676167 CT
1 CT
48676169 CGCGTGCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.15
Consensus pattern (16 bp):
CTGGCAAGGAAGCATC
Found at i:48678985 original size:40 final size:40
Alignment explanation
Indices: 48678918--48679094 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
48678908 ACCCAAGTAT
*
48678918 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
48678957 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
48678997 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
48679037 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
48679077 CTTCAGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
48679095 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 103 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:48681458 original size:123 final size:123
Alignment explanation
Indices: 48681239--48681700 Score: 852
Period size: 123 Copynumber: 3.8 Consensus size: 123
48681229 GAATTATGTG
48681239 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
48681304 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
48681362 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
48681427 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
48681485 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
48681550 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
48681608 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
48681673 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
48681701 AATTATATCC
Statistics
Matches: 331, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 331 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:48681467 original size:64 final size:64
Alignment explanation
Indices: 48681390--48681582 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
48681380 TAATGATTAT
48681390 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
48681454 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
48681511 AT
63 AG
48681513 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
48681577 TGATAT
1 TGATAT
48681583 GTTTGTGTTC
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 2 0.02
59 22 0.26
60 8 0.10
61 7 0.08
62 7 0.08
63 8 0.10
64 28 0.33
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:48681866 original size:40 final size:40
Alignment explanation
Indices: 48681669--48681872 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 40
48681659 TGAATGATAC
* * * * **
48681669 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
48681709 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
48681749 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
48681789 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * ***
48681829 CCGGGCTAAGACCCGAGGGCATTCGTGTGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
48681869 CCGG
1 CCGG
48681873 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:48687845 original size:21 final size:21
Alignment explanation
Indices: 48687821--48687874 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
48687811 TGCAGGGCTC
**
48687821 ACACACTCGTGTG-GTCTAGAG
1 ACACACTCGTGTGACCCTA-AG
*
48687842 ACACGCTCGTGTGACCCTAAG
1 ACACACTCGTGTGACCCTAAG
48687863 ACACACTCGTGT
1 ACACACTCGTGT
48687875 TGTAGGCTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (21 bp):
ACACACTCGTGTGACCCTAAG
Found at i:48689142 original size:57 final size:58
Alignment explanation
Indices: 48689043--48689184 Score: 162
Period size: 57 Copynumber: 2.5 Consensus size: 58
48689033 TAACATATAA
** * * *
48689043 TAGGATTACTAGTCCAGGCTAAATCCTTTTTGTAATATATGCTC-AGAAGAGCCCA-AT
1 TAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACAAATGCTCGAG-AGAGACCATAT
* * **
48689100 TAGGATTACTAGTCCAGGCTAAATCCTAATTGTAGCAAATGCTCGAGAGGGATTATAT
1 TAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACAAATGCTCGAGAGAGACCATAT
* *
48689158 CAGGATTACTAGTCTAGGCTAAATCCT
1 TAGGATTACTAGTCCAGGCTAAATCCT
48689185 GTCAACAACA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 43 0.60
58 29 0.40
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (58 bp):
TAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACAAATGCTCGAGAGAGACCATAT
Found at i:48693200 original size:67 final size:67
Alignment explanation
Indices: 48693121--48693258 Score: 276
Period size: 67 Copynumber: 2.1 Consensus size: 67
48693111 AGCAAAACCT
48693121 CTATTAATCAATTCTTGTAACTATGCTTTTAACTCTTTTAATTCAGTAAAAGCCATTCTGTAAGG
1 CTATTAATCAATTCTTGTAACTATGCTTTTAACTCTTTTAATTCAGTAAAAGCCATTCTGTAAGG
48693186 TA
66 TA
48693188 CTATTAATCAATTCTTGTAACTATGCTTTTAACTCTTTTAATTCAGTAAAAGCCATTCTGTAAGG
1 CTATTAATCAATTCTTGTAACTATGCTTTTAACTCTTTTAATTCAGTAAAAGCCATTCTGTAAGG
48693253 TA
66 TA
48693255 CTAT
1 CTAT
48693259 AGATATCGGT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (67 bp):
CTATTAATCAATTCTTGTAACTATGCTTTTAACTCTTTTAATTCAGTAAAAGCCATTCTGTAAGG
TA
Found at i:48708748 original size:40 final size:40
Alignment explanation
Indices: 48708693--48708902 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48708683 AACATTGGAA
48708693 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48708733 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48708773 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48708813 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48708852 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48708893 CTATATCCGG
1 ATATATCCGG
48708903 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48716880 original size:40 final size:40
Alignment explanation
Indices: 48716825--48717034 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48716815 AACATTGGAA
48716825 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48716865 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48716905 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48716945 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48716984 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48717025 CTATATCCGG
1 ATATATCCGG
48717035 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48721244 original size:20 final size:20
Alignment explanation
Indices: 48721221--48721286 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
48721211 GAAGTACAAA
*
48721221 CAGGGGCATGTAACTGCAAT
1 CAGGGGCATGTAAGTGCAAT
* * * *
48721241 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-TGTAAGTGCAAT
*
48721261 CAGGGGCATTTAAGTGCAAT
1 CAGGGGCATGTAAGTGCAAT
48721281 CAGGGG
1 CAGGGG
48721287 TACTAAAGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.33, T:0.17
Consensus pattern (20 bp):
CAGGGGCATGTAAGTGCAAT
Found at i:48721246 original size:40 final size:40
Alignment explanation
Indices: 48721202--48721320 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
48721192 ATGTGCATTT
* *
48721202 AGGGGTGCCGAAGTACAAACAGGGGCATGTAACTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
*
48721242 AGGGGTACCGAAGTACAAACAGGGGCATTTAAGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
** ** *
48721282 AGGGGTACTAAAGTACAAACATTGGCACGTAAGTGCAAT
1 AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAAT
48721321 AATTCAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCATGTAAGTGCAATC
Found at i:48721295 original size:20 final size:20
Alignment explanation
Indices: 48721235--48721295 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
48721225 GGCATGTAAC
**
48721235 TGCAATCAGGGGTACCGAAG
1 TGCAATCAGGGGTACTAAAG
* * * * *
48721255 TACAAACAGGGGCATTTAAG
1 TGCAATCAGGGGTACTAAAG
48721275 TGCAATCAGGGGTACTAAAG
1 TGCAATCAGGGGTACTAAAG
48721295 T
1 T
48721296 ACAAACATTG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (20 bp):
TGCAATCAGGGGTACTAAAG
Found at i:48724972 original size:2 final size:2
Alignment explanation
Indices: 48724965--48724996 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
48724955 GCTTCGCCAC
48724965 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48724997 TTGTTCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48732447 original size:2 final size:2
Alignment explanation
Indices: 48732440--48732481 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
48732430 GCTTCGCCAC
48732440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48732482 TTGTTCTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48732516 original size:27 final size:26
Alignment explanation
Indices: 48732478--48732536 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
48732468 ATATATATAT
* *
48732478 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
48732504 ATATCTGTATCTGGTGACTTAGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
48732531 ATATCT
1 ATATCT
48732537 AGCACCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:48734584 original size:2 final size:2
Alignment explanation
Indices: 48734577--48734626 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
48734567 TTGAATTGCC
*
48734577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48734619 AT AT AT AT
1 AT AT AT AT
48734627 CTCAATCGCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48737381 original size:38 final size:39
Alignment explanation
Indices: 48737335--48737422 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
48737325 GAAATCCTTG
* *
48737335 TTATAATTATTGTAATTATAA-TTTACGATCAAATATTA
1 TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
* * *
48737373 TTATAATTATTCTAATTGTAATTTTTCGGTCAAACATTA
1 TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
48737412 TTATAATTATT
1 TTATAATTATT
48737423 ATATTCAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.43
39 25 0.57
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.50
Consensus pattern (39 bp):
TTATAATTATTCTAATTATAATTTTACGATCAAACATTA
Found at i:48740207 original size:47 final size:46
Alignment explanation
Indices: 48740090--48740260 Score: 187
Period size: 44 Copynumber: 3.8 Consensus size: 46
48740080 GGATGGTTGA
*
48740090 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAT
* *
48740137 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA-T
*
48740180 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC--ATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC-AAT
*
48740228 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
48740261 TAGGGGCGGG
Statistics
Matches: 107, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 31 0.29
45 30 0.28
46 3 0.03
47 30 0.28
48 4 0.04
49 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAT
Found at i:48747662 original size:46 final size:46
Alignment explanation
Indices: 48747612--48747784 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
48747602 TGTTTGGGCA
*
48747612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
48747658 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
48747705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * **
48747751 CCCGAGCTCGTTGAGTTGAGTCTTAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48747785 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:48758391 original size:31 final size:31
Alignment explanation
Indices: 48758353--48758429 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
48758343 TAACGGTTAT
48758353 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
* *
48758384 TGGGCCGAAGCCTTTTCATAAATCATTTCTC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
48758415 TGGGCTGAAGCCTTT
1 TGGGCCGAAGCCTTT
48758430 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:48758500 original size:42 final size:42
Alignment explanation
Indices: 48758453--48758544 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
48758443 TGGCCCATAG
* ** *
48758453 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
48758495 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
48758537 GCCCATTT
1 GCCCATTT
48758545 GGAGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:48758761 original size:26 final size:26
Alignment explanation
Indices: 48758677--48758812 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
48758667 CTGGAGGCCT
48758677 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
48758701 AGCTCTTTTCAGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
48758726 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
48758752 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
48758778 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
48758804 AGCCCTTTT
1 AGCCCTTTT
48758813 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 58 0.57
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:48758887 original size:20 final size:20
Alignment explanation
Indices: 48758862--48758948 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
48758852 TTATGAATAC
48758862 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
48758882 ATCATGTGCATTTCATTCAT
1 ATCATGTGCATTTCATACAT
*
48758902 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
48758922 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
48758942 ATCATGT
1 ATCATGT
48758949 ATATCATATC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:48758935 original size:11 final size:11
Alignment explanation
Indices: 48758862--48758937 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
48758852 TTATGAATAC
48758862 ATCATGTGCAT
1 ATCATGTGCAT
* *
48758873 TTCA--TACAT
1 ATCATGTGCAT
48758882 ATCATGTGCAT
1 ATCATGTGCAT
*
48758893 TTCAT-T-CAT
1 ATCATGTGCAT
48758902 ATCATGTGCAT
1 ATCATGTGCAT
* * *
48758913 -T-TTATACAT
1 ATCATGTGCAT
48758922 ATCATGTGCAT
1 ATCATGTGCAT
48758933 ATCAT
1 ATCAT
48758938 ATCAATCATG
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 19 0.40
10 4 0.09
11 24 0.51
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:48758954 original size:9 final size:10
Alignment explanation
Indices: 48758879--48758955 Score: 54
Period size: 9 Copynumber: 7.8 Consensus size: 10
48758869 GCATTTCATA
48758879 CATATCATGT
1 CATATCATGT
*
48758889 GCATTTCAT-T
1 -CATATCATGT
48758899 CATATCATGT
1 CATATCATGT
* * *
48758909 GCATTTTAT-A
1 -CATATCATGT
48758919 CATATCATGT
1 CATATCATGT
*
48758929 GCATATCATAT
1 -CATATCATGT
48758940 CA-ATCATGT
1 CATATCATGT
48758949 -ATATCAT
1 CATATCAT
48758956 ATCCTACGTA
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
8 1 0.02
9 24 0.47
10 4 0.08
11 22 0.43
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (10 bp):
CATATCATGT
Found at i:48759012 original size:25 final size:25
Alignment explanation
Indices: 48758984--48759033 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
48758974 ATAATTAAAC
* * *
48758984 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
48759009 CCTAGGGGCAAAATAGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
48759034 TACTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTCA
Found at i:48759802 original size:27 final size:27
Alignment explanation
Indices: 48759724--48760220 Score: 211
Period size: 27 Copynumber: 18.3 Consensus size: 27
48759714 TTTACCTATT
* * **
48759724 AAGGGTATTTTAGTCATTTCAT-CCTAC
1 AAGGGTATTTTAGTAATTTTATAAAT-C
* * * * *
48759751 AAGGGTGTTTTGGTAAATCTATAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
48759778 AAGGGTATTTTAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
48759805 AATGGTATTTCT-CTAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
48759834 AAGGGTATTTTTGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
48759861 AATGGTATTTCT-CTAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* *
48759890 AAGGGTATTTTTGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * * *
48759917 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
** * *
48759944 AAGGGTATTTCGGTAATTTCACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
48759970 CAGTGGTATTTTGGTAATTTTACAAA-C
1 AAG-GGTATTTTAGTAATTTTATAAATC
* * * *
48759997 TAGGGGTGTTTTGGTAATTTTACCT-TAT-
1 -AAGGGTATTTTAGTAATTTTA--TAAATC
* * * *
48760025 AGGGGTATTTCAGTAATTTCA-GAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *** * *
48760051 GAGGGTAAAATGGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
48760078 AATGGTAAAACAGTAATTCTGTAAAGT-
1 AAGGGTATTTTAGTAATTTTATAAA-TC
* * ** *
48760105 GAGAGTATAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
48760132 GAGGGTATTTTAGTAATTTTACAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
48760159 AGGGGGTATTTTAGTAATTTTACAAACC
1 A-AGGGTATTTTAGTAATTTTATAAATC
* *
48760187 AGGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
48760214 GAGGGTA
1 AAGGGTA
48760221 AAATGGTAAT
Statistics
Matches: 361, Mismatches: 89, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
25 2 0.01
26 15 0.04
27 258 0.71
28 60 0.17
29 26 0.07
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:48759843 original size:29 final size:29
Alignment explanation
Indices: 48759808--48759909 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
48759798 GTAAACCAAT
48759808 GGTATTTCTCTAATTTTTAGAAAGTCAAG
1 GGTATTTCTCTAATTTTTAGAAAGTCAAG
* * * *
48759837 GGTATTTTTGTAA-TTTT-GTAAA-CCAAT
1 GGTATTTCTCTAATTTTTAG-AAAGTCAAG
48759864 GGTATTTCTCTAATTTTTAGAAAGTCAAG
1 GGTATTTCTCTAATTTTTAGAAAGTCAAG
* *
48759893 GGTATTTTTGTAATTTT
1 GGTATTTCTCTAATTTT
48759910 GTAAATCAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 15 0.25
28 14 0.24
29 30 0.51
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (29 bp):
GGTATTTCTCTAATTTTTAGAAAGTCAAG
Found at i:48759936 original size:56 final size:56
Alignment explanation
Indices: 48759777--48759914 Score: 267
Period size: 56 Copynumber: 2.5 Consensus size: 56
48759767 ATCTATAAAC
*
48759777 CAAGGGTATTTTAGTAATTTTGTAAACCAATGGTATTTCTCTAATTTTTAGAAAGT
1 CAAGGGTATTTTTGTAATTTTGTAAACCAATGGTATTTCTCTAATTTTTAGAAAGT
48759833 CAAGGGTATTTTTGTAATTTTGTAAACCAATGGTATTTCTCTAATTTTTAGAAAGT
1 CAAGGGTATTTTTGTAATTTTGTAAACCAATGGTATTTCTCTAATTTTTAGAAAGT
48759889 CAAGGGTATTTTTGTAATTTTGTAAA
1 CAAGGGTATTTTTGTAATTTTGTAAA
48759915 TCAGGGGTAT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 81 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (56 bp):
CAAGGGTATTTTTGTAATTTTGTAAACCAATGGTATTTCTCTAATTTTTAGAAAGT
Found at i:48760229 original size:27 final size:27
Alignment explanation
Indices: 48760199--48760300 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
48760189 GGGTATTTTA
* *
48760199 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
48760226 GTAATTCTATAAATTGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48760253 GTAATTCTATAAATCGAGGGCAGAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
48760280 GTAATTCTGTAAATCGGGGGT
1 GTAATTCTATAAATCGAGGGT
48760301 GCTTTGGTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:48764336 original size:13 final size:13
Alignment explanation
Indices: 48764318--48764344 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48764308 AGAGTAATCG
48764318 CACACAGGCGTGT
1 CACACAGGCGTGT
48764331 CACACAGGCGTGT
1 CACACAGGCGTGT
48764344 C
1 C
48764345 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:48774201 original size:28 final size:27
Alignment explanation
Indices: 48774150--48774202 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
48774140 ACAGGGGCTT
48774150 TCACACGGCCTGACACGCCAATGTCCC
1 TCACACGGCCTGACACGCCAATGTCCC
*
48774177 TCACACGGCCATGACACGCCCATGTC
1 TCACACGGCC-TGACACGCCAATGTC
48774203 TAAAAACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.23, C:0.43, G:0.19, T:0.15
Consensus pattern (27 bp):
TCACACGGCCTGACACGCCAATGTCCC
Found at i:48775181 original size:49 final size:49
Alignment explanation
Indices: 48775086--48775213 Score: 143
Period size: 49 Copynumber: 2.6 Consensus size: 49
48775076 GCACATTAAA
* * *
48775086 GTCGATGCCGTGTCCCAGAAAGGTCTTACACTGACTTTAATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTAATATATCG-GT
* * * *
48775135 G-CTGATGTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGT
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGACTCTAATATATCGGT
* *
48775184 GTCGATGCCATGGCCCAAACAGGTCTTACA
1 GTCGATGCCATGTCCCAGACAGGTCTTACA
48775214 TTAACACACA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
48 2 0.03
49 63 0.95
50 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTAATATATCGGT
Found at i:48777784 original size:49 final size:48
Alignment explanation
Indices: 48777630--48777986 Score: 169
Period size: 46 Copynumber: 7.6 Consensus size: 48
48777620 AAGATGCCGG
*
48777630 TGTCATGTCCCAGACATGGTCTTACACTGGCTAAAACATC-A-A-AGTCGA
1 TGTCATGTCCCAGACA-GGTCTTACACTGGCT--ATCATCTATAGAGTCGA
* * * * *
48777678 TGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTC-A
1 TGTCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATAGA-GTCGA
*
48777726 T-TGCTATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGAGTCGA
1 TGT-C-ATGTCCCAGACAGGTCTTACACTGGCTATCATCTATA-GAGTCGA
** ** * *
48777776 TGTCATGTCCCAGACAAATCTTACACTAAC-A-CA-CAACA-AG-CTGA
1 TGTCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATAGAGTC-GA
* * * ** *
48777820 CG-CTATGTCCCAAACAGGTCTTACACTAGCTTGTAT-ATCTCGAG-GCCGA
1 TGTC-ATGTCCCAGACAGGTCTTACACTGGC---TATCATCTATAGAGTCGA
* * * * * *
48777869 TG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-A-TGCCGA
1 TGTCATGTCCCAGACAGGTCTTACACTGGCTATCATCT-ATAGAGTCGA
* * * * *
48777915 TG-CATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT-GTGGCCGA
1 TGTCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATAG-AGTCGA
*
48777961 TG-CATGTCCCAGACATGTCTTACACT
1 TGTCATGTCCCAGACAGGTCTTACACT
48777987 AGCACACATC
Statistics
Matches: 248, Mismatches: 36, Indels: 52
0.74 0.11 0.15
Matches are distributed among these distances:
43 2 0.01
44 28 0.11
45 5 0.02
46 77 0.31
47 16 0.06
48 45 0.18
49 68 0.27
50 6 0.02
51 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
TGTCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATAGAGTCGA
Found at i:48777889 original size:48 final size:47
Alignment explanation
Indices: 48777824--48777989 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 47
48777814 AGCTGACGCT
* *
48777824 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCCGATGC
* ** * *
48777872 ATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATGC
* * * *
48777918 ATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCCGATGC
48777964 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
48777990 ACACATCTCA
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 72 0.73
47 2 0.02
48 25 0.25
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATGC
Found at i:48777999 original size:92 final size:92
Alignment explanation
Indices: 48777728--48777999 Score: 284
Period size: 92 Copynumber: 2.9 Consensus size: 92
48777718 CGAGGTCATT
* * *
48777728 GCTATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGAGTCGATGTCATGTCCCAGACAA
1 GCTATGTCCCAGACAGGTCTTACACTGGCTCTCAT-AATAGG-GCCGATG-CATGTCCCAGACAT
* * * *
48777793 ATCTTACACTAACACACA--ACAAGCTGAC
63 GTCTTACACTAGCACACATCTCAAGCCGAC
* * * * *
48777821 GCTATGTCCCAAACAGGTCTTACACTAGCT-TGTATATCTCGAGGCCGATGCATGTCCCAGACAT
1 GCTATGTCCCAGACAGGTCTTACACTGGCTCT-CATA-ATAG-GGCCGATGCATGTCCCAGACAT
* * * *
48777885 GTCTTACACTAGCTCTCGTCTCAATGCCGAT
63 GTCTTACACTAGCACACATCTCAA-GCCGAC
*
48777916 GC-ATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGT
1 GCTATGTCCCAGACAGGTCTTACACTGGCTCTCATAATAG-GGCCGATGCATGTCCCAGACATGT
48777979 CTTACACTAGCACACATCTCA
65 CTTACACTAGCACACATCTCA
48778000 CCCAATGTCA
Statistics
Matches: 147, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
92 70 0.48
93 39 0.27
94 31 0.21
95 7 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (92 bp):
GCTATGTCCCAGACAGGTCTTACACTGGCTCTCATAATAGGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCACACATCTCAAGCCGAC
Found at i:48781740 original size:46 final size:46
Alignment explanation
Indices: 48781687--48781823 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
48781677 TATATATACA
* * * *
48781687 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
48781733 CATCTCATACACGTTTCGCATTAGCCATTCAGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
48781779 TAACTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
48781824 ATACATGTTC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:48781854 original size:47 final size:47
Alignment explanation
Indices: 48781797--48782034 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
48781787 ACACATTTCG
* * * **
48781797 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
48781844 CATTGGCCATTCGG-CTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48781890 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48781937 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48781984 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48782031 CATT
1 CATT
48782035 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 43 0.24
47 138 0.76
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:48781939 original size:23 final size:23
Alignment explanation
Indices: 48781912--48781986 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
48781902 GGCCTTATCG
48781912 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
48781935 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
48781957 CGCACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
48781982 CACAT
1 CACAT
48781987 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:48782602 original size:20 final size:20
Alignment explanation
Indices: 48782577--48782616 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
48782567 AAATTTTATC
*
48782577 TTATAACCATTTTGTAAAAA
1 TTATAACCATTTTCTAAAAA
**
48782597 TTATAATGATTTTCTAAAAA
1 TTATAACCATTTTCTAAAAA
48782617 CACAACAGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (20 bp):
TTATAACCATTTTCTAAAAA
Found at i:48783279 original size:2 final size:2
Alignment explanation
Indices: 48783272--48783310 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
48783262 TTAATCGTTA
48783272 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48783311 GCATTAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:48786369 original size:51 final size:51
Alignment explanation
Indices: 48786276--48786469 Score: 266
Period size: 51 Copynumber: 3.8 Consensus size: 51
48786266 ACACGATGGC
* * * *
48786276 CTTT-ACATAGTACCACCCTTGTAG-CCAAATCTGTTTTTTTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGG
48786326 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
* * * * *
48786377 CATTCACATAGTACCACACTTTTATCCAAAGCCATTATATTCACAAAGTGG
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
* *
48786428 CCTTCACATAGTACCACACTTGTGTCCAAAGTTATTTTATTC
1 CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
48786470 CTAAGGTTCA
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 5 0.04
51 122 0.96
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (51 bp):
CTTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
Found at i:48786530 original size:28 final size:27
Alignment explanation
Indices: 48786493--48786584 Score: 127
Period size: 28 Copynumber: 3.4 Consensus size: 27
48786483 GGGAAATTTC
*
48786493 TCACTTAGCACCATGCCATGGGCTTATT
1 TCACTTAGCA-CATGCCATGGACTTATT
48786521 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
48786549 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
48786573 TCACTTAGCACA
1 TCACTTAGCACA
48786585 ATGTCATATT
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
24 22 0.38
25 1 0.02
27 3 0.05
28 32 0.55
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:48786570 original size:24 final size:25
Alignment explanation
Indices: 48786504--48786582 Score: 106
Period size: 24 Copynumber: 3.1 Consensus size: 25
48786494 CACTTAGCAC
*
48786504 CATGCCATGGGCTTATTTCACTTAG
1 CATGCCATGGACTTATTTCACTTAG
48786529 CACATTGCCATGGACTTATTTCACTTAG
1 --CA-TGCCATGGACTTATTTCACTTAG
*
48786557 -ATGCCATGGTCTTATTTCACTTAG
1 CATGCCATGGACTTATTTCACTTAG
48786581 CA
1 CA
48786583 CAATGTCATA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
24 22 0.46
25 2 0.04
27 2 0.04
28 22 0.46
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (25 bp):
CATGCCATGGACTTATTTCACTTAG
Found at i:48791029 original size:45 final size:42
Alignment explanation
Indices: 48790891--48791038 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 42
48790881 CCAACATCCT
* * ** * *
48790891 AGACATGGTCTTACATGCTACCTCATATCGATGCCACTATCCC
1 AGACATGGTCTTACACG-AACCAAATATCGATGCCAATGTCCC
* * * ***
48790934 AGACATGGTCTTACATGAATCAAATA-CGATGCCGATGTTTT
1 AGACATGGTCTTACACGAACCAAATATCGATGCCAATGTCCC
*
48790975 AGACATGGTCTTACACGTACCCACATATATCGATGCCAATGTCCC
1 AGACATGGTCTTACACG-AACCA-A-ATATCGATGCCAATGTCCC
*
48791020 AGACGTGGTCTTACACGAA
1 AGACATGGTCTTACACGAA
48791039 AACACATATT
Statistics
Matches: 82, Mismatches: 19, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 25 0.30
42 8 0.10
43 18 0.22
44 4 0.05
45 27 0.33
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACACGAACCAAATATCGATGCCAATGTCCC
Found at i:48791045 original size:45 final size:44
Alignment explanation
Indices: 48790915--48791047 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 44
48790905 ATGCTACCTC
* * * *
48790915 ATATCGATGCCACTATCCCAGACATGGTCTTACATGAATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACACAT
* *** **
48790957 ATA-CGATGCCGATGTTTTAGACATGGTCTTACACGTACCCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AAACACAT
*
48791001 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AAACACAT
48791046 AT
1 AT
48791048 TGAAAATCCT
Statistics
Matches: 70, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
41 25 0.36
42 6 0.09
43 1 0.01
44 3 0.04
45 35 0.50
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:48794007 original size:55 final size:55
Alignment explanation
Indices: 48793933--48794043 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
48793923 ATCACATTAG
*
48793933 TAAGGGGGTGAGGTCGTAAATCCTCTAACTTGACTTCCATACATACACATATGGC
1 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATACACATATGGC
48793988 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATACACATATGGC
1 TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATACACATATGGC
48794043 T
1 T
48794044 TAACATTCAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (55 bp):
TAAGGGGGTGAGGTCGTAAAGCCTCTAACTTGACTTCCATACATACACATATGGC
Found at i:48797161 original size:41 final size:40
Alignment explanation
Indices: 48797116--48797201 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
48797106 AAGCCTGCTA
*
48797116 GACTTAAAACCCAAATCCAATCACCACCACAAAGCATGCGG
1 GACTTAAAACCCAAATACAAT-ACCACCACAAAGCATGCGG
* * ** * * *
48797157 GACTTTAAGCCCGGATATAATACCAGCACAAAGCTTGCGG
1 GACTTAAAACCCAAATACAATACCACCACAAAGCATGCGG
48797197 GACTT
1 GACTT
48797202 TAGCCCGGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
40 22 0.59
41 15 0.41
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.17
Consensus pattern (40 bp):
GACTTAAAACCCAAATACAATACCACCACAAAGCATGCGG
Found at i:48797221 original size:39 final size:39
Alignment explanation
Indices: 48797154--48797409 Score: 365
Period size: 39 Copynumber: 6.5 Consensus size: 39
48797144 ACAAAGCATG
* *
48797154 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAG-CTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
48797193 GCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 -CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
48797234 CAGGACTTAACCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
48797273 CGGGACTTAGCCCGGATATAATACCAGCACGACTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
48797312 CGGGACTTAGCCCGGATATAACACCAGCACGAATACCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
48797351 TGGGACTTA-CCCCGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
48797389 CGGGACTTAGGCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
48797410 TTCTCCATTA
Statistics
Matches: 196, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 35 0.18
39 141 0.72
40 17 0.09
41 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:48800230 original size:51 final size:51
Alignment explanation
Indices: 48800154--48800300 Score: 240
Period size: 51 Copynumber: 2.9 Consensus size: 51
48800144 AGATACATGG
* *
48800154 TGGCCTTCACATAGTACCACCCTTGTGGCCAAAGCTATTTTATTCACAAAA
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAA
* *
48800205 TGGCCTTCATATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAA
* *
48800256 TGGCCTTCACATATTACCACACTTGTGTCCAAAGTTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
48800301 CTAAGGTTCA
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 89 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAA
Found at i:48800356 original size:28 final size:27
Alignment explanation
Indices: 48800324--48800410 Score: 108
Period size: 28 Copynumber: 3.3 Consensus size: 27
48800314 GGGAAATTTC
*
48800324 TCACTAAGCACCATGCCATGGACTTATT
1 TCACTTAGCA-CATGCCATGGACTTATT
**
48800352 TCACTTAG---ATGCCATGGTTTTATT
1 TCACTTAGCACATGCCATGGACTTATT
48800376 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
48800404 TCACTTA
1 TCACTTA
48800411 ATGTAATGCC
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 22 0.44
27 1 0.02
28 27 0.54
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:48800368 original size:24 final size:25
Alignment explanation
Indices: 48800335--48800410 Score: 100
Period size: 24 Copynumber: 3.0 Consensus size: 25
48800325 CACTAAGCAC
48800335 CATGCCATGGACTTATTTCACTTAG
1 CATGCCATGGACTTATTTCACTTAG
**
48800360 -ATGCCATGGTTTTATTTCACTTAG
1 CATGCCATGGACTTATTTCACTTAG
48800384 CACATTGCCATGGACTTATTTCACTTA
1 --CA-TGCCATGGACTTATTTCACTTA
48800411 ATGTAATGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
24 22 0.51
27 1 0.02
28 20 0.47
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.39
Consensus pattern (25 bp):
CATGCCATGGACTTATTTCACTTAG
Found at i:48803040 original size:46 final size:46
Alignment explanation
Indices: 48802987--48803159 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
48802977 TGGTTGAGCA
*
48802987 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
* * * *
48803033 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAA--ATG
* *
48803078 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
* *
48803126 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48803160 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 61 0.56
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
Found at i:48803143 original size:93 final size:93
Alignment explanation
Indices: 48802984--48803154 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
48802974 GGATGGTTGA
* * *
48802984 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
48803049 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
48803077 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
48803142 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48803155 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48806564 original size:23 final size:23
Alignment explanation
Indices: 48806528--48806571 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
48806518 CTTCCACCTG
48806528 AAGTTAGAGAGGCTCAAGAAAAA
1 AAGTTAGAGAGGCTCAAGAAAAA
*
48806551 AAGTTAG-GAGGGCTTAAGAAA
1 AAGTTAGAGA-GGCTCAAGAAA
48806572 CAACAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.48, C:0.07, G:0.30, T:0.16
Consensus pattern (23 bp):
AAGTTAGAGAGGCTCAAGAAAAA
Found at i:48809741 original size:31 final size:31
Alignment explanation
Indices: 48809706--48809768 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
48809696 TTTAGTTGAA
*
48809706 ATATTACATAATTATATACAATTTGAACACT
1 ATATTACATAATTAAATACAATTTGAACACT
48809737 ATATTACATAATTAAATACAATTTGAACACT
1 ATATTACATAATTAAATACAATTTGAACACT
48809768 A
1 A
48809769 AGTCTTAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.37
Consensus pattern (31 bp):
ATATTACATAATTAAATACAATTTGAACACT
Found at i:48812685 original size:6 final size:6
Alignment explanation
Indices: 48812676--48812779 Score: 154
Period size: 6 Copynumber: 17.3 Consensus size: 6
48812666 TAGTAGTAGG
* *
48812676 AGGAGT AGGAGT AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
* * *
48812724 AGGAGC AGGAGC AGGAGC AGGAGC AAGAGT AAGAGC AGGAGC AGGAGC
1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
*
48812772 AAGAGC AG
1 AGGAGC AG
48812780 CAAGAGTAGG
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 91 1.00
ACGTcount: A:0.37, C:0.13, G:0.47, T:0.03
Consensus pattern (6 bp):
AGGAGC
Found at i:48812820 original size:15 final size:15
Alignment explanation
Indices: 48812784--48812824 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
48812774 GAGCAGCAAG
48812784 AGTAGGAGTAG--G-
1 AGTAGGAGTAGCAGC
48812796 AGTAGGAGTAGCAGC
1 AGTAGGAGTAGCAGC
*
48812811 AGTAGTAGTAGCAG
1 AGTAGGAGTAGCAG
48812825 TAGCAACAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 11 0.44
14 1 0.04
15 13 0.52
ACGTcount: A:0.34, C:0.07, G:0.41, T:0.17
Consensus pattern (15 bp):
AGTAGGAGTAGCAGC
Found at i:48812820 original size:21 final size:21
Alignment explanation
Indices: 48812790--48812955 Score: 100
Period size: 21 Copynumber: 7.6 Consensus size: 21
48812780 CAAGAGTAGG
* *
48812790 AGTAGGAGTAGGAGTAGCAGC
1 AGTAGTAGTAGTAGTAGCAGC
* *
48812811 AGTAGTAGTAGCAGTAGCAAC
1 AGTAGTAGTAGTAGTAGCAGC
* **
48812832 AATAGTAGCCGTAGTAGCAGC
1 AGTAGTAGTAGTAGTAGCAGC
* * * *
48812853 AATAGCAAG-AGTAGTAGCTGT
1 AGTAG-TAGTAGTAGTAGCAGC
* *
48812874 AGTAGCCGTAGTAGCAGTAGCAAC
1 AGTA---GTAGTAGTAGTAGCAGC
* * *
48812898 AGTAGCAGTTGCCGTAGTAGCAGT
1 AGTAGTAG-T--AGTAGTAGCAGC
*
48812922 AGTAGCAGTAGTAGTAGCAGC
1 AGTAGTAGTAGTAGTAGCAGC
*
48812943 AGTAGTAATAGTA
1 AGTAGTAGTAGTA
48812956 CGAAGCCTGG
Statistics
Matches: 110, Mismatches: 27, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
21 75 0.68
22 3 0.03
23 3 0.03
24 29 0.26
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.20
Consensus pattern (21 bp):
AGTAGTAGTAGTAGTAGCAGC
Found at i:48812821 original size:6 final size:6
Alignment explanation
Indices: 48812676--48812806 Score: 82
Period size: 6 Copynumber: 21.3 Consensus size: 6
48812666 TAGTAGTAGG
* * * * * *
48812676 AGGAGT AGGAGT AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC
1 AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT
* * * * * * * * *
48812724 AGGAGC AGGAGC AGGAGC AGGAGC AAGAGT AAGAGC AGGAGC AGGAGCA
1 AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAGT AGGAG-T
* *
48812773 AGAGCAGC AAGAGT AGGAGT AGGAGT AGGAGT AG
1 AG-G-AGT AGGAGT AGGAGT AGGAGT AGGAGT AG
48812807 CAGCAGTAGT
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
6 105 0.94
7 3 0.03
8 2 0.02
9 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.47, T:0.05
Consensus pattern (6 bp):
AGGAGT
Found at i:48812826 original size:9 final size:9
Alignment explanation
Indices: 48812814--48812935 Score: 82
Period size: 9 Copynumber: 12.9 Consensus size: 9
48812804 TAGCAGCAGT
48812814 AGTAGTAGC
1 AGTAGTAGC
* *
48812823 AGTAGCAAC
1 AGTAGTAGC
*
48812832 AATAGTAGC
1 AGTAGTAGC
*
48812841 CGTAGTAGC
1 AGTAGTAGC
* *
48812850 AGCAATAGC
1 AGTAGTAGC
48812859 AAGAGTAGTAGC
1 ---AGTAGTAGC
*
48812871 TGTAGTAGC
1 AGTAGTAGC
*
48812880 CGTAGTAGC
1 AGTAGTAGC
* *
48812889 AGTAGCAAC
1 AGTAGTAGC
*
48812898 AGTAGCAGTTGC
1 AGT---AGTAGC
*
48812910 CGTAGTAGC
1 AGTAGTAGC
48812919 AGTAGTAGC
1 AGTAGTAGC
48812928 AGTAGTAG
1 AGTAGTAG
48812936 TAGCAGCAGT
Statistics
Matches: 84, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
9 72 0.86
12 12 0.14
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (9 bp):
AGTAGTAGC
Found at i:48812892 original size:15 final size:15
Alignment explanation
Indices: 48812874--48812923 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
48812864 TAGTAGCTGT
48812874 AGTAGCCGTAGTAGC
1 AGTAGCCGTAGTAGC
***
48812889 AGTAGCAACAGTAGC
1 AGTAGCCGTAGTAGC
*
48812904 AGTTGCCGTAGTAGC
1 AGTAGCCGTAGTAGC
48812919 AGTAG
1 AGTAG
48812924 TAGCAGTAGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (15 bp):
AGTAGCCGTAGTAGC
Found at i:48812944 original size:39 final size:39
Alignment explanation
Indices: 48812796--48812947 Score: 117
Period size: 39 Copynumber: 3.9 Consensus size: 39
48812786 TAGGAGTAGG
* * * * * *
48812796 AGTAGGAGTAGCAGCAGTAGTAGTAGCAGTAGCAACAAT
1 AGTAGCAGTAGTAGCAGTAGTAGTAGCAGCAGTAGCAGT
* * * * * *
48812835 AGTAGCCGTAGTAGCAGCAATAGCAAG-AGTAGTAGCTGT
1 AGTAGCAGTAGTAGCAGTAGTAG-TAGCAGCAGTAGCAGT
* * ** * * *
48812874 AGTAGCCGTAGTAGCAGTAGCAACAGTAGCAGTTGCCGT
1 AGTAGCAGTAGTAGCAGTAGTAGTAGCAGCAGTAGCAGT
48812913 AGTAGCAGTAGTAGCAGTAGTAGTAGCAGCAGTAG
1 AGTAGCAGTAGTAGCAGTAGTAGTAGCAGCAGTAG
48812948 TAATAGTACG
Statistics
Matches: 87, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
38 2 0.02
39 83 0.95
40 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.32, T:0.20
Consensus pattern (39 bp):
AGTAGCAGTAGTAGCAGTAGTAGTAGCAGCAGTAGCAGT
Found at i:48812949 original size:15 final size:15
Alignment explanation
Indices: 48812883--48812947 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
48812873 TAGTAGCCGT
*
48812883 AGTAGCAGTAGCAAC
1 AGTAGCAGTAGCAGC
* * *
48812898 AGTAGCAGTTGCCGT
1 AGTAGCAGTAGCAGC
*
48812913 AGTAGCAGTAGTAGC
1 AGTAGCAGTAGCAGC
*
48812928 AGTAGTAGTAGCAGC
1 AGTAGCAGTAGCAGC
48812943 AGTAG
1 AGTAG
48812948 TAATAGTACG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.20
Consensus pattern (15 bp):
AGTAGCAGTAGCAGC
Found at i:48812955 original size:30 final size:30
Alignment explanation
Indices: 48812802--48812955 Score: 103
Period size: 30 Copynumber: 5.1 Consensus size: 30
48812792 TAGGAGTAGG
* * *
48812802 AGTAGCAGCAGTAGTAGTAGCAGTAGCAAC
1 AGTAGCAGTAGTAGTAGCAGCAGTAGCAAT
* * ** * *
48812832 AATAGTAGCCGTAGTAGCAGCAATAGCAAG
1 AGTAGCAGTAGTAGTAGCAGCAGTAGCAAT
* * * *
48812862 AGTAGTAGCT-GTAGTAGCCGTAGTAGCAGT
1 AGTAGCAG-TAGTAGTAGCAGCAGTAGCAAT
* * * * * * *
48812892 AGCAACAGTAGCAGTTGCCGTAGTAGCAGT
1 AGTAGCAGTAGTAGTAGCAGCAGTAGCAAT
*
48812922 AGTAGCAGTAGTAGTAGCAGCAGTAGTAAT
1 AGTAGCAGTAGTAGTAGCAGCAGTAGCAAT
48812952 AGTA
1 AGTA
48812956 CGAAGCCTGG
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.01
30 95 0.99
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (30 bp):
AGTAGCAGTAGTAGTAGCAGCAGTAGCAAT
Found at i:48816583 original size:93 final size:93
Alignment explanation
Indices: 48816471--48816642 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48816461 GCCCATAAGT
* * *
48816471 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48816536 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
48816564 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
48816629 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
48816643 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:48816638 original size:46 final size:46
Alignment explanation
Indices: 48816463--48816638 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
48816453 TGTAACCCGC
* *
48816463 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
48816509 CCATAAGTGAACTCGGACTCAATTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
48816555 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
48816602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
48816639 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:48823589 original size:23 final size:23
Alignment explanation
Indices: 48823563--48823611 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
48823553 CAATCTATCC
48823563 AAAGTCAGCAAAAGTGATCTACA
1 AAAGTCAGCAAAAGTGATCTACA
48823586 AAAGTCAGCAAAAGTGATCTACA
1 AAAGTCAGCAAAAGTGATCTACA
48823609 AAA
1 AAA
48823612 TGACACATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (23 bp):
AAAGTCAGCAAAAGTGATCTACA
Found at i:48823791 original size:39 final size:39
Alignment explanation
Indices: 48823747--48823907 Score: 205
Period size: 39 Copynumber: 4.1 Consensus size: 39
48823737 TAAGTTCAAA
* *
48823747 TCAGGGGTACCAAAGTACTACAGGGGCACATAGGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
* * * * ***
48823786 TCAGGGATTCCGAAGTACAACAAGGGCTTGTATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
48823825 TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
* ** *
48823864 TCAGGGGTACCAAAGTACAATAGGGGCATGTATGTGCGT
1 TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
48823903 TCAGG
1 TCAGG
48823908 TATAATTACA
Statistics
Matches: 102, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 102 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (39 bp):
TCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCAT
Found at i:48823839 original size:78 final size:78
Alignment explanation
Indices: 48823727--48823907 Score: 245
Period size: 78 Copynumber: 2.3 Consensus size: 78
48823717 AAAATATAAT
* * * *
48823727 CAAGGGCATGTAAGTTCAAATCAGGGGTACCAAAGTACTACAGGGGCACATAGGTGCATTCAGGG
1 CAAGGGCATGTATGTGC-ATTCAGGGGTACCAAAGTACAACAGGGGCACATAGGTGCATTCAGGG
* *
48823792 ATTCCGAAGTACAA
65 ATACCAAAGTACAA
* * *
48823806 CAAGGGCTTGTATGTGCATTCAGGGGTACCAAAGTACAACAGGGGCACATATGTGCATTCAGGGG
1 CAAGGGCATGTATGTGCATTCAGGGGTACCAAAGTACAACAGGGGCACATAGGTGCATTCAGGGA
48823871 TACCAAAGTACAA
66 TACCAAAGTACAA
* * *
48823884 TAGGGGCATGTATGTGCGTTCAGG
1 CAAGGGCATGTATGTGCATTCAGG
48823908 TATAATTACA
Statistics
Matches: 89, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
78 75 0.84
79 14 0.16
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (78 bp):
CAAGGGCATGTATGTGCATTCAGGGGTACCAAAGTACAACAGGGGCACATAGGTGCATTCAGGGA
TACCAAAGTACAA
Found at i:48823848 original size:19 final size:19
Alignment explanation
Indices: 48823826--48823889 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
48823816 TATGTGCATT
48823826 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
* * * *
48823845 CAGGGGCA-CATATGTGCATT
1 CAGGGGTACCA-AAGTACA-A
48823865 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
*
48823884 TAGGGG
1 CAGGGG
48823890 CATGTATGTG
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
18 2 0.06
19 17 0.52
20 12 0.36
21 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.31, T:0.16
Consensus pattern (19 bp):
CAGGGGTACCAAAGTACAA
Found at i:48826821 original size:27 final size:27
Alignment explanation
Indices: 48826757--48826839 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
48826747 AGCATTGCTG
* * *
48826757 CCAGAACAGAT-TATGTGACAGAG-TA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* *
48826782 CCAGAACATATAATTGTGGCAGAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
* *
48826809 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAAATGTGGCAGAGCCA
48826836 CCAG
1 CCAG
48826840 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 10 0.21
26 9 0.19
27 28 0.60
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAAATGTGGCAGAGCCA
Found at i:48828232 original size:24 final size:24
Alignment explanation
Indices: 48828197--48828273 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
48828187 CCAACACTGT
* * *
48828197 TCTCCCTAATCAGCTCTTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
48828221 CCTCCCTTATCATCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
48828245 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
48828269 TCTCC
1 TCTCC
48828274 TGACAGACTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.23, C:0.42, G:0.01, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:48828725 original size:28 final size:28
Alignment explanation
Indices: 48828694--48828748 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
48828684 ATTACACTGT
*
48828694 ACTGATACTGTATTGGGC-ATAGGCCCAC
1 ACTGATACTGTATAGGGCTA-AGGCCCAC
*
48828722 ACTGTTACTGTATAGGGCTAAGGCCCA
1 ACTGATACTGTATAGGGCTAAGGCCCA
48828749 GATTGTACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (28 bp):
ACTGATACTGTATAGGGCTAAGGCCCAC
Found at i:48833203 original size:34 final size:34
Alignment explanation
Indices: 48833165--48833234 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
48833155 CCTTAGCCCT
* *
48833165 TTTCAGTAACTGTAGCAATCTGGGCCTGACCCCA
1 TTTCAGTAACAGTAGCAATCTGGGCCTAACCCCA
* *
48833199 TTTCAGTAACAGTAGCAGTCTGGGCCTAAGCCCA
1 TTTCAGTAACAGTAGCAATCTGGGCCTAACCCCA
48833233 TT
1 TT
48833235 AACATATCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAATCTGGGCCTAACCCCA
Found at i:48835383 original size:29 final size:29
Alignment explanation
Indices: 48835350--48835423 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48835340 GTGACGAGAT
48835350 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48835379 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48835408 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48835424 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48835439 original size:29 final size:28
Alignment explanation
Indices: 48835407--48835481 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
48835397 CTGGAAATAT
* *
48835407 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
48835436 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
48835464 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
48835482 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:48835450 original size:58 final size:57
Alignment explanation
Indices: 48835350--48835481 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
48835340 GTGACGAGAT
* * * * * *
48835350 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
48835408 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
48835465 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
48835482 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:48843258 original size:29 final size:29
Alignment explanation
Indices: 48843225--48843298 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48843215 GTGACGAGAT
48843225 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48843254 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48843283 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48843299 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48843314 original size:29 final size:28
Alignment explanation
Indices: 48843282--48843356 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
48843272 CTGGAAATAT
* *
48843282 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
48843311 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
48843339 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
48843357 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:48843325 original size:58 final size:57
Alignment explanation
Indices: 48843225--48843356 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
48843215 GTGACGAGAT
* * * * * *
48843225 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
48843283 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
48843340 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
48843357 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:48850602 original size:40 final size:40
Alignment explanation
Indices: 48850506--48850684 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
48850496 CGAATGATAT
* * * *
48850506 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
48850547 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
48850587 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
48850627 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
48850667 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
48850685 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 91 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:48850640 original size:80 final size:81
Alignment explanation
Indices: 48850506--48850684 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
48850496 CGAATGATAT
* * *
48850506 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
48850571 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
48850587 CCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
48850650 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
48850667 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
48850685 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.69
81 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:48850697 original size:80 final size:80
Alignment explanation
Indices: 48850540--48850724 Score: 196
Period size: 80 Copynumber: 2.3 Consensus size: 80
48850530 GTGCTAAGTG
* * * *
48850540 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* **
48850605 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * *
48850620 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
*
48850684 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTT
* * * *
48850700 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
48850725 TACGTGATTC
Statistics
Matches: 87, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 8 0.09
80 76 0.87
81 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACATCGATGCGAGTT
Found at i:48850705 original size:40 final size:40
Alignment explanation
Indices: 48850627--48850710 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
48850617 GTTACTAAAT
* * *
48850627 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
48850667 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
48850707 CCGG
1 CCGG
48850711 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:48854238 original size:2 final size:2
Alignment explanation
Indices: 48854231--48854255 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
48854221 TTAGCTGAAC
48854231 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
48854256 ACATGCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48857700 original size:30 final size:30
Alignment explanation
Indices: 48857664--48857721 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
48857654 GATCTAAACA
48857664 TATTCAAATTAAACTCAGTCAAACATATGT
1 TATTCAAATTAAACTCAGTCAAACATATGT
* *
48857694 TATTCAAATTAAACTCATTCACACATAT
1 TATTCAAATTAAACTCAGTCAAACATAT
48857722 TTTCACTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (30 bp):
TATTCAAATTAAACTCAGTCAAACATATGT
Found at i:48869390 original size:46 final size:45
Alignment explanation
Indices: 48869303--48869466 Score: 145
Period size: 46 Copynumber: 3.5 Consensus size: 45
48869293 ACATTATGAA
* *
48869303 AGCCTATGTAAGACCATGTTTGGGACATGGCATC-GCATCGAGACAAGT
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGAC--GT
** * * *
48869351 -GTTAGTGTAAGACATGTCCGGGACATGCATCAGCCTCGAGACGT
1 AGCCAATGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGT
*
48869395 AAGCCAATGTAAGACATGTCTGGGACATGCATCAGC-TACGAGATGAT
1 -AGCCAATGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGACG-T
* *
48869442 AGTCAATGTAAGACCATATCTGGGA
1 AGCCAATGTAAGA-CATGTCTGGGA
48869467 TATGGCATTG
Statistics
Matches: 96, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 69 0.72
47 19 0.20
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGCCAATGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGT
Found at i:48876191 original size:25 final size:25
Alignment explanation
Indices: 48876163--48876241 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
48876153 CGAATGGCCA
48876163 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
* * * *
48876188 ATGTGAT-AAGGCCGAATG-GCCA---
1 ATGTGATGAATG-TGAAAGTG-TATGT
48876210 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
48876235 ATGTGAT
1 ATGTGAT
48876242 AAGGCCGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 12 0.31
23 4 0.10
24 4 0.10
25 19 0.49
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATGT
Found at i:48876195 original size:96 final size:96
Alignment explanation
Indices: 48875993--48876481 Score: 769
Period size: 96 Copynumber: 5.1 Consensus size: 96
48875983 ACAAGATATG
48875993 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATG--TATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
*
48876056 GAATGGCCAATGTGATGAATGTGAAAGTATATA
66 GAATGGCCAATGTGATGAATGTGAAAG--TGTA
*
48876089 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
48876154 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48876185 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
*
48876248 GAATGGCCAATGTGATGAATGTGAAAGTATA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48876279 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
*
48876344 GAATGGCCAATGTGATGAATGTGAAAGCGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
48876375 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--AGTATATATATATGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
* *
48876438 GAATGGTCAATGTGATGGAA-GTGGAAGTGTA
66 GAATGGCCAATGTGAT-GAATGTGAAAGTGTA
48876469 TA-ACTGTGATAAG
1 TATA-TGTGATAAG
48876482 TCCCGAAGGA
Statistics
Matches: 367, Mismatches: 20, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 143 0.39
95 3 0.01
96 179 0.49
98 41 0.11
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (96 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:48876378 original size:190 final size:191
Alignment explanation
Indices: 48875995--48876454 Score: 850
Period size: 190 Copynumber: 2.4 Consensus size: 191
48875985 AAGATATGTA
*
48875995 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
48876060 GGCCAATGTGATGAATGTGAAAGTATATATATATATGATAAGGCCGAATGGCCAATGTGATGAAT
66 GGCCAATGTGATGAATGTGAAAG-ATATATATATATGATAAGGCCGAATGGCCAATGTGATGAAT
*
48876125 GTGAAGGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
130 GTGAAGGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATG
48876187 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
48876252 GGCCAATGTGATGAATGTGAAAG-TATATATATATGATAAGGCCGAATGGCCAATGTGATGAATG
66 GGCCAATGTGATGAATGTGAAAGATATATATATATGATAAGGCCGAATGGCCAATGTGATGAATG
48876316 TGAAGGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATG
131 TGAAGGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATG
* * *
48876377 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
*
48876442 GGTCAATGTGATG
66 GGCCAATGTGATG
48876455 GAAGTGGAAG
Statistics
Matches: 262, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
190 175 0.67
192 87 0.33
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (191 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGATATATATATATGATAAGGCCGAATGGCCAATGTGATGAATG
TGAAGGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATG
Found at i:48876479 original size:47 final size:47
Alignment explanation
Indices: 48875993--48876481 Score: 748
Period size: 47 Copynumber: 10.3 Consensus size: 47
48875983 ACAAGATATG
*
48875993 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48876040 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG--TGTA
* *
48876089 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
48876136 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48876185 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48876232 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48876279 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48876326 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTA
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48876375 TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
48876422 TATATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTA
48876469 TA-ACTGTGATAAG
1 TATA-TGTGATAAG
48876482 TCCCGAAGGA
Statistics
Matches: 407, Mismatches: 27, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 271 0.67
48 3 0.01
49 132 0.32
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:48879252 original size:47 final size:47
Alignment explanation
Indices: 48879130--48879455 Score: 219
Period size: 47 Copynumber: 6.9 Consensus size: 47
48879120 AACATTGGGT
*
48879130 TATG-TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CA
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA
* * *
48879176 T-TGA-GACGAGGGCTAGTGTAAGA-CGTGTCTGGGACATGCATCAGCCA
1 TATGATGA-TA--GCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCA
* * * **
48879223 TATTATGATAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGTA
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAG-CCA
* * * * *
48879272 GAT-ATGAGT-GCCAGTTTAAGA-CGTGTCTAGGACATGCATCGACCTCA
1 TATGATGA-TAGCCAGTGTAAGACCATGTCTGGGACATGCATC-AGC-CA
* * *
48879319 -ATGATGGTAGCCAGTGTAAGA-CATGTGC-GGGACATGCATCAACACT
1 TATGATGATAGCCAGTGTAAGACCATGT-CTGGGACATGCATCAGC-CA
* * * * *
48879365 TATACACGAGAGCTAGTGTAAGACCA--TCTGGGACATGACATCAGCCT
1 TAT-GATGATAGCCAGTGTAAGACCATGTCTGGGACATG-CATCAGCCA
*
48879412 TGATGAAGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 T-ATGATGATAGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
48879456 GGCAACTTAA
Statistics
Matches: 221, Mismatches: 34, Indels: 47
0.73 0.11 0.16
Matches are distributed among these distances:
45 4 0.02
46 33 0.15
47 103 0.47
48 58 0.26
49 22 0.10
50 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCA
Found at i:48879299 original size:94 final size:93
Alignment explanation
Indices: 48879130--48879455 Score: 324
Period size: 94 Copynumber: 3.5 Consensus size: 93
48879120 AACATTGGGT
* * *
48879130 TATG-TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT-GAGACGAGGGCTAGT
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG--TTAGACACGAGAGCTAGT
48879193 GTAAGACGTGTCTGGGACATGCATCAGCCA
64 GTAAGACGTGTCTGGGACATGCATCAGCCA
* * * * * * * *
48879223 TATTATGATAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGTAGATATGAGTGCCAGTT
1 TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGT-TAGACACGAGAGCTAGTG
* *
48879288 TAAGACGTGTCTAGGACATGCATCGACCTCA
65 TAAGACGTGTCTGGGACATGCATC-AGC-CA
* * *
48879319 -ATGATGGTAGCCAGTGTAAGA-CATGTGC-GGGACAT-GCATCAACACTTATACACGAGAGCTA
1 TATGATGATAGCCAGTGTAAGACCATGT-CTGGGACATGGCAT---CAGTTAGACACGAGAGCTA
** *
48879380 GTGTAAGAC-CATCTGGGACATGACATCAGCCT
62 GTGTAAGACGTGTCTGGGACATG-CATCAGCCA
*
48879412 TGATGAAGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 T-ATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
48879456 GGCAACTTAA
Statistics
Matches: 189, Mismatches: 29, Indels: 29
0.77 0.12 0.12
Matches are distributed among these distances:
92 1 0.01
93 9 0.05
94 95 0.50
95 64 0.34
96 16 0.08
97 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
TATGATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTTAGACACGAGAGCTAGTGT
AAGACGTGTCTGGGACATGCATCAGCCA
Found at i:48886812 original size:31 final size:32
Alignment explanation
Indices: 48886755--48886816 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
48886745 ACGAAGTCAC
* *
48886755 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
48886787 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
48886817 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:48886839 original size:71 final size:67
Alignment explanation
Indices: 48886762--48886902 Score: 185
Period size: 67 Copynumber: 2.0 Consensus size: 67
48886752 CACCAGATAT
* * *
48886762 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAA-GCCACCAGATTGCAGCGA
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGC-AAGGCCACCAGATTGCAGCGA
48886826 GGCTGCC
61 GGCTGCC
* *
48886833 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGTTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTG
48886898 CC
66 CC
48886900 AGA
1 AGA
48886903 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
66 2 0.03
67 38 0.59
71 24 0.38
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.19
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTG
CC
Found at i:48900175 original size:14 final size:13
Alignment explanation
Indices: 48900155--48900186 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
48900145 AATATTTGAC
48900155 TTGTTCTTAATTA
1 TTGTTCTTAATTA
48900168 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
48900182 TTGTT
1 TTGTT
48900187 ATGATATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:48904802 original size:93 final size:93
Alignment explanation
Indices: 48904689--48904860 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
48904679 GCCCATAAGT
* * *
48904689 GAACTTGGACTCAACTCAACGAGATCGGGCGTCCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATCCACATCCATAAGTGAACTCAGACTCAACTCAA
48904754 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *** *
48904782 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATCCACATCCATAAGTGAACTCAGACTCAACTCAA
* *
48904847 CGAGTTTGGATGCC
66 CGAGCTCGGATGCC
48904861 CAAACATCCT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGATCGGACATCCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Done.