Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 176 of 444
Found at i:48904856 original size:46 final size:46
Alignment explanation
Indices: 48904681--48904852 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
48904671 TGTAACCCGC
* * * * **
48904681 CCATAAGTGAACTTGGACTCAACTCAACGAGATCGGGCGTCCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * *
48904727 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
* * *
48904777 CTC-T---CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
48904820 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
48904853 TGGATGCCCA
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 58 0.57
47 26 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:48907285 original size:15 final size:15
Alignment explanation
Indices: 48907248--48907286 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
48907238 CAAGAAAACC
* *
48907248 GAATAAAAAAATCCA
1 GAATAAAGAGATCCA
48907263 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
*
48907278 GGATAAAGA
1 GAATAAAGA
48907287 AACCTAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.59, C:0.10, G:0.18, T:0.13
Consensus pattern (15 bp):
GAATAAAGAGATCCA
Found at i:48912339 original size:47 final size:45
Alignment explanation
Indices: 48912277--48912592 Score: 180
Period size: 47 Copynumber: 6.7 Consensus size: 45
48912267 GACGAGGGCT
* *
48912277 AGTGTATGACGTGTCTGGGACATGCATCAGGCACATTACGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCACATTACGATAGCC
* *
48912323 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGA-TATGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--ACATTACGA-TAGCC
* * * *
48912371 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCAATTATGGA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCAC-ATTA-CGATAGCC
* * * * *
48912418 AATGTAAGACATGTCTGAGACATACATCGGCTA-AGCTT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACA--TTACGATAGCC
* * * * *
48912462 AGTGTAAGACATGTTTGGGACATCCATCAGCAC-TTAAACACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACATT----ACGATAGCC
* * * *
48912510 AGTGTAAAACCATGTCTGGGACATCGCATCGGCCTCGATGAAGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CAC-ATTACGATAGCC
48912559 AGTGTAAGACCATGTCTGGGACATGACATCGGCA
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCA
48912593 ACTTAACCCA
Statistics
Matches: 207, Mismatches: 35, Indels: 54
0.70 0.12 0.18
Matches are distributed among these distances:
41 2 0.01
43 1 0.00
44 28 0.14
45 2 0.01
46 17 0.08
47 62 0.30
48 36 0.17
49 51 0.25
50 5 0.02
51 2 0.01
53 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATTACGATAGCC
Found at i:48912343 original size:94 final size:95
Alignment explanation
Indices: 48912229--48912588 Score: 270
Period size: 94 Copynumber: 3.8 Consensus size: 95
48912219 TGTGAGAGCG
* * * *
48912229 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGACGAGGGCTAGTGTATGACGTGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAGACGAGGGCCAGTGTAAGACGTGTCTG
*
48912294 GGACATGCATCAGGCAC-ATTA-CGATAGCC
66 GGACATGCATCAGCCACAATTATCGA-AGCC
* * * * *
48912323 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGATATGAGTGCCAGTGTAAGACGTGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAGACGAGGGCCAGTGTAAGACGTGTCTG
* *
48912388 GGACATGCATCAGCCTCAATTATGGAAGCC
66 GGACATGCATCAGCCACAATTATCGAAGCC
* * * * ** * * * *
48912418 AATGTAAGA-CATGTCTGAGACAT-ACATCGGC-TA-AG-CTTTGTGCTAGTGTAAGACATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAGAC-GAGGGCCAGTGTAAGACGTGTCT
* ** *
48912478 GGGACATCCATCAG-CACTTAAACA-CGAGAGCT
65 GGGACATGCATCAGCCAC--AATTATCGA-AGCC
* * * * * * ** *
48912510 AGTGTAAAACCATGTCTGGGACATCGCATCGGCCTCGATGAAGATAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGA-GACGAGGGCCAGTGTAAGA-CGTGTC
48912575 TGGGACATGACATC
64 TGGGACATG-CATC
48912589 GGCAACTTAA
Statistics
Matches: 211, Mismatches: 41, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
90 2 0.01
91 34 0.16
92 15 0.07
93 20 0.09
94 91 0.43
95 17 0.08
96 3 0.01
97 12 0.06
98 13 0.06
99 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAGACGAGGGCCAGTGTAAGACGTGTCTG
GGACATGCATCAGCCACAATTATCGAAGCC
Found at i:48915244 original size:39 final size:39
Alignment explanation
Indices: 48915180--48915323 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
48915170 CCGCACAAAG
*
48915180 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * * *
48915220 GCCTTTGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
48915259 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
48915298 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
48915324 TCGAACATTC
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 85 0.91
40 8 0.09
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:48915289 original size:78 final size:79
Alignment explanation
Indices: 48915166--48915322 Score: 253
Period size: 78 Copynumber: 2.0 Consensus size: 79
48915156 CCGGTTATGG
*
48915166 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTTGGGCT
1 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
48915231 TAGCCCGGATATCA
66 TAGCCCGGATATCA
* ** * *
48915245 TAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCACAATTTGCACAATTGCCTTCGGGCT
1 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
48915309 TAGCCCGGATATCA
66 TAGCCCGGATATCA
48915323 CTCGAACATT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 52 0.72
79 20 0.28
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (79 bp):
TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
TAGCCCGGATATCA
Found at i:48918784 original size:28 final size:28
Alignment explanation
Indices: 48918719--48918790 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
48918709 ATAGTGAATC
* *
48918719 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
48918748 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
48918776 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48918791 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:48926696 original size:28 final size:28
Alignment explanation
Indices: 48926631--48926702 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
48926621 ATAGTGAATC
* *
48926631 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
48926660 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
48926688 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48926703 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:48932841 original size:80 final size:80
Alignment explanation
Indices: 48932757--48932905 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
48932747 TATGGTAACC
* * * *
48932757 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
48932821 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
48932837 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
48932902 CCGG
66 CCGG
48932906 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:48932847 original size:40 final size:38
Alignment explanation
Indices: 48932798--48932905 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
48932788 ATCACGATTT
*
48932798 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
48932838 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
48932878 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48932906 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:48940149 original size:80 final size:80
Alignment explanation
Indices: 48940065--48940213 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
48940055 TATGGTAACC
* * * *
48940065 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
48940129 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
48940145 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
48940210 CCGG
66 CCGG
48940214 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:48940155 original size:40 final size:38
Alignment explanation
Indices: 48940106--48940213 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
48940096 ATCACGATTT
*
48940106 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
48940146 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
48940186 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48940214 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:48944401 original size:28 final size:28
Alignment explanation
Indices: 48944336--48944407 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
48944326 ATAGTGAATC
* *
48944336 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
48944365 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
48944393 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48944408 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:48947761 original size:28 final size:28
Alignment explanation
Indices: 48947692--48947792 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
48947682 GACAAGATTG
* * * *
48947692 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
48947722 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48947750 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
48947779 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48947793 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48955699 original size:28 final size:28
Alignment explanation
Indices: 48955630--48955730 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
48955620 GACAAGATTG
* * * *
48955630 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
48955660 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48955688 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
48955717 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48955731 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48964729 original size:28 final size:28
Alignment explanation
Indices: 48964664--48964764 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
48964654 ATAGTGAATC
*
48964664 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
48964693 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48964721 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
48964751 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48964765 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48972677 original size:39 final size:39
Alignment explanation
Indices: 48972593--48972745 Score: 207
Period size: 39 Copynumber: 3.9 Consensus size: 39
48972583 TATGGTAACC
** * *
48972593 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
48972633 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
48972672 CGCACAATTGCCTTCGGGCTTAGTCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
48972711 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
48972746 TCGAACATTC
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 84 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:48972723 original size:78 final size:79
Alignment explanation
Indices: 48972562--48972744 Score: 253
Period size: 78 Copynumber: 2.3 Consensus size: 79
48972552 TCGTTCAAAC
* **
48972562 GCCTTCGGGACATAGCCC-GATTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
1 GCCTTCGGG-CTTAGCCCGGA-TATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
48972626 CACAATTTGCACAATT
64 CACAATTTGCACAATT
* ** ** *
48972642 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGTCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
48972706 CAATTTGCACAATT
66 CAATTTGCACAATT
48972720 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
48972745 CTCGAACATT
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 52 0.56
79 30 0.32
80 11 0.12
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:48974089 original size:45 final size:46
Alignment explanation
Indices: 48974029--48974143 Score: 144
Period size: 47 Copynumber: 2.5 Consensus size: 46
48974019 TGCACACTTT
* *
48974029 TCACAATTGGTCATTCGGTCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGTCTTATCACATATAACACTTACACAT-TCA
* *
48974075 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGTCTTATCACATATA-ACACTTACACATTCA
*
48974122 TCACATTGGCCATTCGATCTTA
1 TCACATTGGCCATTCGGTCTTA
48974144 AGCTAGATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 24 0.40
46 5 0.08
47 31 0.52
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (46 bp):
TCACATTGGCCATTCGGTCTTATCACATATAACACTTACACATTCA
Found at i:48976728 original size:22 final size:20
Alignment explanation
Indices: 48976688--48976728 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
48976678 AGTCCTATTA
*
48976688 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
48976708 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
48976729 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:48977738 original size:40 final size:40
Alignment explanation
Indices: 48977683--48977955 Score: 471
Period size: 40 Copynumber: 6.9 Consensus size: 40
48977673 GAATACACAT
* * *
48977683 CACCAGCATGAATGCTCTTCGGGACCTAGCTCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
48977723 CACCAGCACGAATGCTCTTCAGGACTTAGCTCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
48977763 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977803 CACCAGCACGAATGCTCTTC-GGACTTAGCCC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977841 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977880 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977920 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
48977956 CATCGGCGAG
Statistics
Matches: 224, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
38 38 0.17
39 37 0.17
40 149 0.67
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:48977892 original size:117 final size:119
Alignment explanation
Indices: 48977683--48977952 Score: 472
Period size: 117 Copynumber: 2.3 Consensus size: 119
48977673 GAATACACAT
* * *
48977683 CACCAGCATGAATGCTCTTCGGGACCTAGCTCGGATATAACACCAGCACGAATGCTCTTCAGGAC
1 CACCAGCACGAATGCTCTTCGGGACTTAGC-CCGATATAACACCAGCACGAATGCTCTTCAGGAC
* *
48977748 TTAGCTCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
65 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977803 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGATATAACACCAGCACGAATGCTCTTC-GGACT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGATATAACACCAGCACGAATGCTCTTCAGGACT
48977866 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
66 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48977920 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
48977953 GATCATCGGC
Statistics
Matches: 144, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
117 77 0.53
118 40 0.28
119 8 0.06
120 19 0.13
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (119 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGATATAACACCAGCACGAATGCTCTTCAGGACT
TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:48980423 original size:39 final size:40
Alignment explanation
Indices: 48980339--48980423 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
48980329 ACTTAATTCA
* * *
48980339 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
48980379 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
48980418 TCAGCA
1 CCAGCA
48980424 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:48980548 original size:45 final size:46
Alignment explanation
Indices: 48980494--48980602 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
48980484 TGCACACTTT
* *
48980494 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
48980540 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
48980587 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
48980603 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:48982956 original size:4 final size:4
Alignment explanation
Indices: 48982947--48982974 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
48982937 TACTTTTTCC
48982947 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
48982975 GTCATATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:48983201 original size:22 final size:20
Alignment explanation
Indices: 48983161--48983201 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
48983151 AGTCCTATTA
*
48983161 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
48983181 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
48983202 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:48987962 original size:47 final size:47
Alignment explanation
Indices: 48987846--48987966 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
48987836 GTTATTGTGG
** *
48987846 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGGCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAGGCACAAGACGAGA
* *
48987892 GCCT-GTGTAAGACAATGTATGGGACATGGCATC-GGCATCAAGACGAGT
1 G-CTAGTGTAAGAC-ATGTCTGGGACATGGCATCAGGCA-CAAGACGAGA
*
48987940 GCTAGTGTAAGACATATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
48987967 ATCGGCCAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 10 0.16
47 32 0.51
48 21 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAGGCACAAGACGAGA
Found at i:48987987 original size:25 final size:26
Alignment explanation
Indices: 48987949--48987999 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
48987939 TGCTAGTGTA
*
48987949 AGACATATCTGGGACATG-ATCGGCC
1 AGACATATCGGGGACATGCATCGGCC
48987974 AGACATATCGGGGACATGCATCGGCC
1 AGACATATCGGGGACATGCATCGGCC
48988000 TCAAGACGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.18
Consensus pattern (26 bp):
AGACATATCGGGGACATGCATCGGCC
Found at i:48996571 original size:46 final size:45
Alignment explanation
Indices: 48996514--48996683 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 45
48996504 TTGAGCATCT
48996514 GAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGCGAATGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATG-GAATGTTC
* * * *
48996560 GAACTCATTGAGTTGAGTCCAAGTTCA--T-GAGATGTAATTAGGCATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGGAA-T--G--TTC
* ** * *
48996607 GAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGTGAACGCTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATG-GAATGTTC
* *
48996653 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48996684 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 1 0.01
45 1 0.01
46 55 0.55
47 27 0.27
48 1 0.01
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTACAGATGGAATGTTC
Found at i:49003010 original size:40 final size:40
Alignment explanation
Indices: 49002936--49003118 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
49002926 AACCCAAGTA
*
49002936 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
49002975 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
49003015 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
49003055 CCTTCGGGACTTAGCCCGGATATTGTCACTAGCACAAAACG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
49003096 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
49003119 CATCCGAATA
Statistics
Matches: 135, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 95 0.70
41 27 0.20
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49007454 original size:46 final size:44
Alignment explanation
Indices: 49007404--49007576 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 44
49007394 GTTGAGCATC
*
49007404 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGAT
* * *
49007450 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAA-T--G-AT
* **
49007496 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCC
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATGAT
* * *
49007543 CGAGCTCATTGAGTTGAGTCTGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
49007577 GGCGGTTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.54
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAATGAT
Found at i:49007558 original size:93 final size:93
Alignment explanation
Indices: 49007399--49007569 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
49007389 GGATGGTTGA
* ** *
49007399 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
49007464 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
49007492 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
*
49007557 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
49007570 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49011277 original size:42 final size:42
Alignment explanation
Indices: 49011200--49011338 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 42
49011190 TCCCGGATGT
* * *
49011200 GGTCTTACATGTAACTCAATATCGATGCCTTTGTCCCAGACAA
1 GGTCTTACACGTAAATCAATA-CGATGCCTATGTCCCAGACAA
*
49011243 GGTCTTACACG-AAATCAGATACGATGCCAATGTCCCAGA-AA
1 GGTCTTACACGTAAATCA-ATACGATGCCTATGTCCCAGACAA
* * *
49011284 TGGTCTTATACGTAAATCTCAAT-CGAGGCCTATGTCCCAGACAC
1 -GGTCTTACACGTAAA--TCAATACGATGCCTATGTCCCAGACAA
49011328 GGTCTTACACG
1 GGTCTTACACG
49011339 ATGTCTCAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.02
42 31 0.38
43 42 0.52
44 3 0.04
45 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGTAAATCAATACGATGCCTATGTCCCAGACAA
Found at i:49015725 original size:51 final size:51
Alignment explanation
Indices: 49015649--49015795 Score: 242
Period size: 51 Copynumber: 2.9 Consensus size: 51
49015639 GGATACACGA
* *
49015649 TGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTTACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAG
*
49015700 TGGCCTTGACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
*
49015751 TGGCCTTCACATAGTACCACACTTATGTCCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
49015796 CTAAGGTTCA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 1 0.01
51 89 0.99
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
Found at i:49015863 original size:24 final size:24
Alignment explanation
Indices: 49015831--49015877 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
49015821 ACTTAGTAAA
49015831 ATGCCATGGACTTATTTAACTTAG
1 ATGCCATGGACTTATTTAACTTAG
*
49015855 ATGCCATGGACTTATTTCACTTA
1 ATGCCATGGACTTATTTAACTTA
49015878 TCACATTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (24 bp):
ATGCCATGGACTTATTTAACTTAG
Found at i:49024249 original size:43 final size:43
Alignment explanation
Indices: 49024188--49024272 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
49024178 TTGAAAGCTA
49024188 AAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTGATCTG
1 AAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTGATCTG
49024231 AAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTGATCT
1 AAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTGATCT
49024273 TTATGATTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (43 bp):
AAAATTTGCAGCTACTTATTCCTCTCATAATGTAAGTGATCTG
Found at i:49025217 original size:44 final size:47
Alignment explanation
Indices: 49025104--49025223 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 47
49025094 TTAGTGCCAT
* *
49025104 TGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGGTAGCAAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTAGACGATGCTAGCAAG
* * * * * * *
49025151 TGCAAGACGTGTCTAGGTCATGCATTGG-CTA-A-GAGTTCTA-CTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTAGACGA-TGCTAGCAAG
49025195 TGTAAGACATGTCTGGGACATGCATCGGC
1 TGTAAGACATGTCTGGGACATGCATCGGC
49025224 ACGTATAAAT
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
44 28 0.49
45 4 0.07
46 2 0.04
47 23 0.40
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTAGACGATGCTAGCAAG
Found at i:49026930 original size:49 final size:49
Alignment explanation
Indices: 49026877--49027095 Score: 251
Period size: 49 Copynumber: 4.4 Consensus size: 49
49026867 CTGCTACGCA
*
49026877 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
* ** ** * *
49026926 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCCGGTACACG
* * * * * *
49026976 TAGTAGCCTGCACTTGGTACTACACACGTG-ATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACACG
*
49027027 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
*
49027076 TAGTAGCCTACACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
49027096 GTGACCTCAC
Statistics
Matches: 138, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
49 62 0.45
50 41 0.30
51 34 0.25
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
Found at i:49027046 original size:101 final size:98
Alignment explanation
Indices: 49026877--49027095 Score: 269
Period size: 101 Copynumber: 2.2 Consensus size: 98
49026867 CTGCTACGCA
**
49026877 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* *
49026942 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * * * *
49026976 TAGTAGCCTGCACTTGGTACTACACACGTG-ATCGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACACATAGTAGCCTGCAC
* ** *
49027040 TTAGTACTACACATGCGACCAATTATCCGGTACACG
63 TTAGTACTACACACGCGACCAACCATCCGATACACG
*
49027076 TAGTAGCCTACACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
49027096 GTGACCTCAC
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 25 0.25
100 34 0.33
101 43 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:49027378 original size:27 final size:27
Alignment explanation
Indices: 49027348--49027401 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
49027338 TCATACAACC
*
49027348 CATGTAACAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
49027375 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
49027402 TTCACATGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:49032654 original size:43 final size:43
Alignment explanation
Indices: 49032602--49032689 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
49032592 AAATTTAATG
*
49032602 TTAGACCTTTCACTAAATAAGAACAGTTCTGAATAAATTTTGA
1 TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
*
49032645 TTAGACCTTTCACTAAAGAAGAACAGTTTTGAATAAATTTTGA
1 TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
49032688 TT
1 TT
49032690 TACACTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (43 bp):
TTAGACCTTTCACTAAAGAAGAACAGTTCTGAATAAATTTTGA
Found at i:49035081 original size:51 final size:49
Alignment explanation
Indices: 49035026--49035153 Score: 175
Period size: 51 Copynumber: 2.6 Consensus size: 49
49035016 GGTTATCTAC
* * *
49035026 TACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTATCGGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATG-CAACAAA-TTATCCGG
* *
49035077 TACGCATGGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCAACAAATTATCCGG
* *
49035126 TACACGTAGTAGCCTGCACTTAGTACTA
1 TACGCATAGTAGCCTGCACTTAGTACTA
49035154 TGCACGTGAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 32 0.46
50 4 0.06
51 33 0.48
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCAACAAATTATCCGG
Found at i:49035141 original size:49 final size:51
Alignment explanation
Indices: 49035030--49035153 Score: 171
Period size: 49 Copynumber: 2.5 Consensus size: 51
49035020 ATCTACTACG
* * * *
49035030 CATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTCAACAAAGTTATCCGGTACA
* *
49035081 CATGGTAGCCTGCACTTAGTACTACACATG-CAACCAA-TTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTCAACAAAGTTATCCGGTACA
*
49035130 CGTAGTAGCCTGCACTTAGTACTA
1 CATAGTAGCCTGCACTTAGTACTA
49035154 TGCACGTGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
49 32 0.49
50 4 0.06
51 29 0.45
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTCAACAAAGTTATCCGGTACA
Found at i:49035441 original size:27 final size:27
Alignment explanation
Indices: 49035411--49035464 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
49035401 TCATACAACC
* *
49035411 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
49035438 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
49035465 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:49037639 original size:13 final size:13
Alignment explanation
Indices: 49037621--49037646 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49037611 AGGCCATGTG
49037621 AAAGGACACGGGC
1 AAAGGACACGGGC
49037634 AAAGGACACGGGC
1 AAAGGACACGGGC
49037647 GTGTGTCCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.38, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGC
Found at i:49041710 original size:24 final size:24
Alignment explanation
Indices: 49041678--49041762 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
49041668 AATCTCAAAT
49041678 GCACTATGTGTGCGACTTACTATA
1 GCACTATGTGTGCGACTTACTATA
* *
49041702 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGACTTACTATA
* *
49041726 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ACTTACTATA
49041750 GCACTATGTGTGC
1 GCACTATGTGTGC
49041763 AACGTTTGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 49 0.91
25 5 0.09
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGACTTACTATA
Found at i:49051009 original size:39 final size:38
Alignment explanation
Indices: 49050978--49051057 Score: 115
Period size: 39 Copynumber: 2.1 Consensus size: 38
49050968 TATATGTCCA
*
49050978 GCACGTAGCCTGCGGACCTAAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACCTAAAGTCCGGATAT-ATTCTC
* *
49051017 GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACCTAAAGTCCGGATAT-ATTCTC
49051056 GC
1 GC
49051058 GTATATATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (38 bp):
GCACATAGCCTGCGGACCTAAAGTCCGGATATATTCTC
Found at i:49056003 original size:49 final size:49
Alignment explanation
Indices: 49055842--49056062 Score: 217
Period size: 49 Copynumber: 4.6 Consensus size: 49
49055832 TTATGTGCCC
* *
49055842 GTGTAAGA-CATGTCTGGGACAT-GCATCGATCAC-AT-TATGAGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-AGCACGATATATGAGAGCCA
* * * * *
49055888 GTGTAAGACCATGTTTGGGACATGGCATCAG--TGTAGAGATGAGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCACG-ATATATGAGAGCCA
* *
49055936 GTGTAAGA-CATGTCTGGGACAT-GCATCAGCACGTATATACGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCACG-ATATATGAGAGCCA
* * * * *
49055984 GTGTAAGACCATGTGTGGGACATGGCATCGACCCCGAT-GATGATAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-AGCACGATATATGAGAGCCA
49056033 GTGTAAGACCATGTCTGGGACATGGCATCA
1 GTGTAAGACCATGTCTGGGACATGGCATCA
49056063 ACAACTTATC
Statistics
Matches: 145, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
46 15 0.10
47 28 0.19
48 43 0.30
49 48 0.33
50 7 0.05
51 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATATGAGAGCCA
Found at i:49056023 original size:94 final size:94
Alignment explanation
Indices: 49055834--49056062 Score: 266
Period size: 94 Copynumber: 2.4 Consensus size: 94
49055824 CGCATTACTT
* * * *
49055834 ATGTGCCCGTGTAAGACATGTCTGGGACATGCATCGATCACATTATGAGTGCCAGTGTAAGACCA
1 ATGTGCCAGTGTAAGACATGTCTGGGACATGCATC-AGCACATTACGAGAGCCAGTGTAAGACCA
* ** *
49055899 TGTTTGGGACATGGCATCAGTGTAGAGATG
65 TGTGTGGGACATGGCATCAGTACACAGATG
*
49055929 A-GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGAC
1 ATGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCAC--AT-TACGAGAGCCAGTGTAAGAC
* *
49055993 CATGTGTGGGACATGGCATC-G-ACCCCGATG
63 CATGTGTGGGACATGGCATCAGTACACAGATG
49056023 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 ATG-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCA
49056063 ACAACTTATC
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
93 4 0.03
94 37 0.32
95 5 0.04
96 37 0.32
97 12 0.10
98 14 0.12
99 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
ATGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACATTACGAGAGCCAGTGTAAGACCAT
GTGTGGGACATGGCATCAGTACACAGATG
Found at i:49056993 original size:13 final size:13
Alignment explanation
Indices: 49056975--49057000 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49056965 GAGCCCGTGT
49056975 GAAAGGACACGGG
1 GAAAGGACACGGG
49056988 GAAAGGACACGGG
1 GAAAGGACACGGG
49057001 TGTGTGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.46, T:0.00
Consensus pattern (13 bp):
GAAAGGACACGGG
Found at i:49061980 original size:40 final size:40
Alignment explanation
Indices: 49061935--49062102 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
49061925 CGGAATATAA
49061935 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49061975 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49062015 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49062055 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
49062095 CCGGATAT
1 CCGGATAT
49062103 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49069991 original size:40 final size:40
Alignment explanation
Indices: 49069946--49070112 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49069936 CGGAATATAA
49069946 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49069986 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49070026 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49070066 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49070105 CCGGATAT
1 CCGGATAT
49070113 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49071945 original size:12 final size:12
Alignment explanation
Indices: 49071928--49071952 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49071918 ATGTAAGTGA
49071928 TCTTGATGATTT
1 TCTTGATGATTT
49071940 TCTTGATGATTT
1 TCTTGATGATTT
49071952 T
1 T
49071953 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:49072780 original size:47 final size:47
Alignment explanation
Indices: 49072668--49072885 Score: 184
Period size: 47 Copynumber: 4.7 Consensus size: 47
49072658 AATTACTTAT
* **
49072668 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCA-A-ATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATAGACGATGA
* * *
49072714 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGA-GATAA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGACGATGA
* * * *
49072762 GTGCCAGTGTAAGACATGT-TCGAGACATGCATTGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCT-GGGACATGCATCGGCATAGACGATGA
* * * *
49072809 -TAGCCAGTGTAAGACGTGTCTAGGACATCCATCGGC-T-GA-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGACGATG-A
*
49072853 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
49072886 AGCACGTATA
Statistics
Matches: 140, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.21
45 3 0.02
46 25 0.18
47 57 0.41
48 24 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGACGATGA
Found at i:49076998 original size:30 final size:30
Alignment explanation
Indices: 49076964--49077024 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
49076954 GGGACACATA
49076964 GTCGTATAACATGACCGTGTGTCACACACG
1 GTCGTATAACATGACCGTGTGTCACACACG
49076994 GTCGTATAACATGACCGTGTGTCACACACG
1 GTCGTATAACATGACCGTGTGTCACACACG
49077024 G
1 G
49077025 CTGAGACACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (30 bp):
GTCGTATAACATGACCGTGTGTCACACACG
Found at i:49078073 original size:43 final size:43
Alignment explanation
Indices: 49078026--49078141 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
49078016 TATCACATAT
* * *
49078026 CGATGCCAATGTCCCAAACAGGGTCTTACACGA-AATCGAT-TA-A
1 CGATGCCAATGTCCCAGACATGGTCTTACAC-ATAATC--TCAACA
*
49078069 CGATGCCAATGTTCCAGACATGGTCTTACACATAATCTCAACA
1 CGATGCCAATGTCCCAGACATGGTCTTACACATAATCTCAACA
*
49078112 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
49078142 TGTATTCACA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 2 0.03
43 61 0.95
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACATAATCTCAACA
Found at i:49083618 original size:40 final size:40
Alignment explanation
Indices: 49083541--49083757 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
49083531 ACCCAAGTAT
* *
49083541 CTTCGGGATTTAG-CC-GATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
49083579 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
49083619 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
49083659 CTTCGGGACTTAGCCCGGATATAGT-ACT-GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
49083697 CTT-GGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
49083736 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
49083758 CATCCGAATA
Statistics
Matches: 165, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
37 21 0.13
38 27 0.16
39 18 0.11
40 98 0.59
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:49083738 original size:77 final size:80
Alignment explanation
Indices: 49083541--49083757 Score: 327
Period size: 77 Copynumber: 2.8 Consensus size: 80
49083531 ACCCAAGTAT
* * * *
49083541 CTTCGGGATTTAG-CC-GATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
49083604 CACTAGCATGAATGC
66 CACTAGCACAAATGC
*
49083619 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
49083684 -ACT-GCACAAATGC
66 CACTAGCACAAATGC
*
49083697 CTT-GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
49083758 CATCCGAATA
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 56 0.44
78 23 0.18
79 5 0.04
80 44 0.34
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:49083748 original size:117 final size:118
Alignment explanation
Indices: 49083541--49083757 Score: 332
Period size: 117 Copynumber: 1.8 Consensus size: 118
49083531 ACCCAAGTAT
* * *
49083541 CTTCGGGATTTAGCCGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCA
1 CTTCGGGACTTAGCCGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
**
49083606 CTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
49083659 CTTCGGGACTTAGCCCGGATATAG-TACT-GCACAAATGCCTT-GGGACTTAGCCCGGATATAGT
1 CTTCGGGACTTAG-CC-GATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
49083721 AACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
49083758 CATCCGAATA
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
117 53 0.59
118 25 0.28
119 5 0.06
120 7 0.08
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (118 bp):
CTTCGGGACTTAGCCGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:49089740 original size:40 final size:40
Alignment explanation
Indices: 49089673--49089849 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
49089663 ACCCAAGTAT
*
49089673 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
49089712 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
49089752 CTTCGGGTCTTAGCCCGAATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
49089792 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
49089832 CTTTGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
49089850 TTATCATCCG
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 101 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:49097726 original size:40 final size:40
Alignment explanation
Indices: 49097658--49097785 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
49097648 TCTTTGGGAT
49097658 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
49097697 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
* * * *
49097737 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
49097777 TTAGTCCGG
1 TTAGCCCGG
49097786 TTATCATCCG
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
39 5 0.07
40 68 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:49102161 original size:39 final size:40
Alignment explanation
Indices: 49101983--49102201 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
49101973 ACCCAAGTAT
* * *
49101983 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* * **
49102022 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* *
49102062 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
49102102 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
49102142 CTTC-GGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
49102181 CTT-AGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
49102202 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 66 0.40
40 98 0.60
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
Found at i:49108217 original size:40 final size:40
Alignment explanation
Indices: 49108172--49108301 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 40
49108162 CGGAATATAA
49108172 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
* *
49108212 CCGGATA-GA--ATGTCCCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGT---GCACAAATGCCTTCGGGTCTTAGC
* * * * *
49108252 CCGGATGTAGCCACT-AGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
49108292 CCGGATATAA
1 CCGGATATAA
49108302 ATTCCAGTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
37 4 0.06
39 1 0.01
40 65 0.90
43 1 0.01
44 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:49108322 original size:80 final size:80
Alignment explanation
Indices: 49108188--49108337 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
49108178 ATAACCATGT
* * *
49108188 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCCCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCCAGCACGAATGCCTTCGGGAT-TTAGC
49108252 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
49108268 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAAT-TCCAGTA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA-AAATGTCCAGCACGAA-TGCCTTCGGGATTTAG
49108331 CCCGGAT
64 CCCGGAT
49108338 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 2 0.03
80 54 0.90
81 4 0.07
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCCAGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:49113975 original size:43 final size:43
Alignment explanation
Indices: 49113914--49114043 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
49113904 AAATAGGATC
*
49113914 TCGATATGTGTTCTCGTGTAAGACCATGTTTGGGACATTGGCA
1 TCGATATGTATTCTCGTGTAAGACCATGTTTGGGACATTGGCA
* * * ** * *
49113957 TCGATATGTTTTCTCGTGTAAGACCCTATCCGGGATAGTGGCA
1 TCGATATGTATTCTCGTGTAAGACCATGTTTGGGACATTGGCA
* * * *
49114000 TCGATATGTGATT-ACATGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATGT-ATTCTCGTGTAAGACCATGTTTGGGACATTGGCA
49114043 T
1 T
49114044 TGTACGATAG
Statistics
Matches: 68, Mismatches: 18, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
43 66 0.97
44 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (43 bp):
TCGATATGTATTCTCGTGTAAGACCATGTTTGGGACATTGGCA
Found at i:49116122 original size:40 final size:40
Alignment explanation
Indices: 49116041--49116183 Score: 213
Period size: 40 Copynumber: 3.6 Consensus size: 40
49116031 TATTCGGATG
49116041 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
*
49116082 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
49116122 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGACT
49116162 ATATCC-GGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
49116184 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.15
40 55 0.57
41 26 0.27
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:49124105 original size:40 final size:40
Alignment explanation
Indices: 49124024--49124327 Score: 479
Period size: 40 Copynumber: 7.6 Consensus size: 40
49124014 TATTCGGATG
49124024 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
* *
49124065 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
49124105 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
*
49124146 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
49124186 ATATCCGTGCTAAGTCCCGAAGGCATTTGTACTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
49124226 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
49124266 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
49124306 ATATCC-GGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
49124328 TACTTGGGTT
Statistics
Matches: 247, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.00
39 14 0.06
40 168 0.68
41 64 0.26
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:49124264 original size:80 final size:81
Alignment explanation
Indices: 49124024--49124327 Score: 499
Period size: 81 Copynumber: 3.8 Consensus size: 81
49124014 TATTCGGATG
*
49124024 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCTGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
49124089 ATTTGTGCTAGTGACT
66 ATTTGTGCTAGTGACT
49124105 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
49124170 ATTTGTGCTAGTGACT
66 ATTTGTGCTAGTGACT
* * * * *
49124186 ATATCCGTGCTAAGTCCCGAAGGCA-TTTGTACTAGTGACTTTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
49124250 ATTTGTGCTAGTGACT
66 ATTTGTGCTAGTGACT
* *
49124266 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
49124328 TACTTGGGTT
Statistics
Matches: 209, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
79 14 0.07
80 90 0.43
81 105 0.50
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTGCTAGTGACT
Found at i:49127781 original size:45 final size:45
Alignment explanation
Indices: 49127721--49127836 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
49127711 CATAACATTT
* * * *
49127721 TTTCAGCTATGGTCTTACTCGTTTCCGGTAT-GATGCCATAGTTTC
1 TTTCAACTATGGTCTTATTAGTTTCCGGTATAG-TGCCATAGTGTC
*
49127766 TTTCAACTATGGTCTTATTTAG-TTCTGGTATAGTGCCATAGTGTC
1 TTTCAACTATGGTCTTA-TTAGTTTCCGGTATAGTGCCATAGTGTC
*
49127811 TTTCAACTATGGTCTTATTTGTTTCC
1 TTTCAACTATGGTCTTATTAGTTTCC
49127837 TTCAAGCAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 3 0.05
45 55 0.90
46 3 0.05
ACGTcount: A:0.17, C:0.19, G:0.18, T:0.46
Consensus pattern (45 bp):
TTTCAACTATGGTCTTATTAGTTTCCGGTATAGTGCCATAGTGTC
Found at i:49130139 original size:22 final size:21
Alignment explanation
Indices: 49130114--49130165 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
49130104 TGGGTTGTTA
*
49130114 CAAAATTAAA-TATGACAATATG
1 CAAAATTAAAGTATAACAA-A-G
49130136 C-AAATTAAAGTATAACAAAG
1 CAAAATTAAAGTATAACAAAG
49130156 CAAAAATTAA
1 C-AAAATTAA
49130166 CTATTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.08
21 9 0.35
22 15 0.58
ACGTcount: A:0.60, C:0.10, G:0.08, T:0.23
Consensus pattern (21 bp):
CAAAATTAAAGTATAACAAAG
Found at i:49131432 original size:42 final size:42
Alignment explanation
Indices: 49131352--49131434 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
49131342 AGGTGCAGAA
*
49131352 TTCACACGGCCAAGACACACGCCTGTGTGTTGCGCTGTGTAT
1 TTCACACGGCCAAGACACACGCCTGTCTGTTGCGCTGTGTAT
**
49131394 TTCACACGGCTGAGACACACGCCCATGTCT-TTGC-CTGTGTA
1 TTCACACGGCCAAGACACACG-CC-TGTCTGTTGCGCTGTGTA
49131435 ACCAGTTCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 26 0.72
43 6 0.17
44 4 0.11
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.27
Consensus pattern (42 bp):
TTCACACGGCCAAGACACACGCCTGTCTGTTGCGCTGTGTAT
Found at i:49133166 original size:49 final size:49
Alignment explanation
Indices: 49133094--49133192 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
49133084 TTAATCTATC
49133094 TATTTCGGGGATTAATTTGAAAAGTTATCAAAGTATCAAAGTTTTTCCA
1 TATTTCGGGGATTAATTTGAAAAGTTATCAAAGTATCAAAGTTTTTCCA
49133143 TATTTCGGGGATTAATTTGAAAAGTTATCAAAGTATCAAAGTTTTTCCA
1 TATTTCGGGGATTAATTTGAAAAGTTATCAAAGTATCAAAGTTTTTCCA
49133192 T
1 T
49133193 GGATGAATAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (49 bp):
TATTTCGGGGATTAATTTGAAAAGTTATCAAAGTATCAAAGTTTTTCCA
Found at i:49135528 original size:40 final size:39
Alignment explanation
Indices: 49135484--49135613 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
49135474 CGTAATACAA
49135484 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
49135524 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * ** *
49135564 CCGGATGTAGCTGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
49135604 CCGGATATAA
1 CCGGATATAA
49135614 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:49135634 original size:40 final size:40
Alignment explanation
Indices: 49135500--49135634 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 40
49135490 ATAACCACGT
* * * **
49135500 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAC-GACTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACTG-CCA
* * * * *
49135540 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCTGCTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACTGCCA
* * *
49135580 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACTGCCA
* *
49135620 GCATAAATGTCTTCG
1 GCACAAATGCCTTCG
49135635 AAACTTAGCC
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 78 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAACTGCCA
Found at i:49143356 original size:40 final size:39
Alignment explanation
Indices: 49143324--49143537 Score: 261
Period size: 40 Copynumber: 5.4 Consensus size: 39
49143314 AATACCCTCA
* * *
49143324 GGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCTTTC
1 GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC
*
49143363 GGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTC
1 -GGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
*
49143403 GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC
1 GGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* *
49143443 GGATCTTAGTCCGGATTTAGTAACTCGCACAATTGCCTTC
1 GGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* * *
49143483 GGATCTTAGTCCGGATTTAGTAACTTAGCACAGA-GCCTTC
1 GGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTC
49143523 GGGACTTAGCCCGGA
1 -GGACTTAGCCCGGA
49143538 CATCATTCAA
Statistics
Matches: 159, Mismatches: 11, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 145 0.91
41 11 0.07
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (39 bp):
GGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
Found at i:49143430 original size:80 final size:80
Alignment explanation
Indices: 49143340--49143537 Score: 294
Period size: 80 Copynumber: 2.5 Consensus size: 80
49143330 AGCCCGGTTA
* *
49143340 TAGTAGCTCGCACAAATGCTTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
49143405 ATCTTAGTCCGGATT
66 ATCTTAGTCCGGATT
*
49143420 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTCGCACAATTGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTC
49143483 GGATCTTAGTCCGGATT
64 GGATCTTAGTCCGGATT
* * *
49143500 TAGTAACTTAGCACAGA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTATCCCGGA
49143538 CATCATTCAA
Statistics
Matches: 107, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
79 3 0.03
80 93 0.87
81 11 0.10
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:49150177 original size:40 final size:40
Alignment explanation
Indices: 49150118--49150259 Score: 220
Period size: 40 Copynumber: 3.6 Consensus size: 40
49150108 TATTCGGATG
49150118 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
49150158 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
49150198 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGACT
49150238 ATATCC-GGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
49150260 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 2, Indels: 7
0.92 0.02 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.15
40 79 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:49158257 original size:40 final size:40
Alignment explanation
Indices: 49158176--49158358 Score: 291
Period size: 40 Copynumber: 4.6 Consensus size: 40
49158166 TATTCGGATG
49158176 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
*
49158217 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
49158257 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
49158297 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
49158337 ATATCC-GGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
49158359 TACTTGGGTT
Statistics
Matches: 136, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 14 0.10
40 95 0.70
41 26 0.19
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:49161272 original size:37 final size:37
Alignment explanation
Indices: 49161230--49161303 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
49161220 TAGTATAACT
*
49161230 TGTCTTGCCTTACCTTACCTTGCTATTCTCTTTAAAC
1 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
49161267 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
1 TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
49161304 CTTCCCATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.28, G:0.08, T:0.46
Consensus pattern (37 bp):
TGTCTTGCCTTACCTTACCTTGATATTCTCTTTAAAC
Found at i:49166211 original size:93 final size:93
Alignment explanation
Indices: 49166052--49166222 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
49166042 GGATGGTTGA
* *
49166052 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
49166117 TGAGTCCTAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
49166145 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
49166210 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49166223 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49166225 original size:46 final size:46
Alignment explanation
Indices: 49166056--49166227 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
49166046 GGTTGAGCAT
* * *
49166056 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
49166102 CCGAACTCGTTGAGTTGAGTCCTAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
49166147 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
49166195 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
49166228 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:49167130 original size:21 final size:21
Alignment explanation
Indices: 49167092--49167136 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
49167082 CTGTTCTGAC
* *
49167092 TTTAAAAATTCATAATAAATT
1 TTTAAAAAATAATAATAAATT
* *
49167113 TTTAAAAAATAATTATAAGTT
1 TTTAAAAAATAATAATAAATT
49167134 TTT
1 TTT
49167137 CTTTATATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTAAAAAATAATAATAAATT
Found at i:49167738 original size:67 final size:67
Alignment explanation
Indices: 49167581--49167758 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 67
49167571 AACACTTAGT
* * * * *
49167581 ACCACCCATGTGACCTAGC--CATTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACACATGCGACCTAGCTACATTTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACCT
49167644 GGA
66 -GA
* *
49167647 ACCACAGATGCGACCTAGCTACA-TTTATCCCGTAGCTCTCTTGTCTACATGGTATACATC-CCT
1 ACCACACATGCGACCTAGCTACATTTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACCT
*
49167710 -T
66 GA
* * *
49167711 ATCACACATGTGACCTAGCTACCACATTTTATCTCATAGCTCTCTTGT
1 ACCACACATGCGACCTAGCT---ACATTTTATCTCGTAGCTCTCTTGT
49167759 ACACATGATG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
64 17 0.18
66 19 0.20
67 36 0.39
68 21 0.23
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (67 bp):
ACCACACATGCGACCTAGCTACATTTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACCT
GA
Found at i:49176369 original size:40 final size:40
Alignment explanation
Indices: 49176314--49176526 Score: 284
Period size: 40 Copynumber: 5.3 Consensus size: 40
49176304 ACCCAAGTAT
*
49176314 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
*
49176354 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
* * * * * *
49176394 CTTCGAGACTTAGCACGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
* *
49176434 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGC
* * *
49176474 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
*
49176514 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
49176527 TCCGAATAAC
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
Found at i:49180571 original size:17 final size:17
Alignment explanation
Indices: 49180546--49180580 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
49180536 CGAAATTAAC
* *
49180546 TAGGCCACACGACCGTG
1 TAGGACACACAACCGTG
49180563 TAGGACACACAACCGTG
1 TAGGACACACAACCGTG
49180580 T
1 T
49180581 GGTAGATCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (17 bp):
TAGGACACACAACCGTG
Found at i:49185404 original size:14 final size:15
Alignment explanation
Indices: 49185377--49185405 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49185367 GAACTTTTAA
49185377 GTGGTTGAGTTGTGG
1 GTGGTTGAGTTGTGG
49185392 GTGGTTG-GTTGTGG
1 GTGGTTGAGTTGTGG
49185406 CCGAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.03, C:0.00, G:0.55, T:0.41
Consensus pattern (15 bp):
GTGGTTGAGTTGTGG
Found at i:49186876 original size:23 final size:24
Alignment explanation
Indices: 49186843--49186887 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
49186833 TTATCCCCAC
* *
49186843 ATAGAGTGTAG-GGTTGGATGGAG
1 ATAGAGCGTAGAGGCTGGATGGAG
49186866 ATAGAGCGTAGAGGCTGGATGG
1 ATAGAGCGTAGAGGCTGGATGG
49186888 CTAGGACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.27, C:0.04, G:0.47, T:0.22
Consensus pattern (24 bp):
ATAGAGCGTAGAGGCTGGATGGAG
Found at i:49186938 original size:18 final size:18
Alignment explanation
Indices: 49186915--49186954 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49186905 CATTATTTAT
49186915 TGCACTGTTTACTATTAC
1 TGCACTGTTTACTATTAC
* *
49186933 TGCACTGTTTAGTGTTAC
1 TGCACTGTTTACTATTAC
49186951 TGCA
1 TGCA
49186955 ATGGCCAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.42
Consensus pattern (18 bp):
TGCACTGTTTACTATTAC
Found at i:49191659 original size:16 final size:16
Alignment explanation
Indices: 49191638--49191669 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49191628 ATACCAAATA
49191638 CATAAAGCTTAGTAAG
1 CATAAAGCTTAGTAAG
49191654 CATAAAGCTTAGTAAG
1 CATAAAGCTTAGTAAG
49191670 TTTCATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (16 bp):
CATAAAGCTTAGTAAG
Found at i:49192008 original size:47 final size:48
Alignment explanation
Indices: 49191939--49192158 Score: 203
Period size: 46 Copynumber: 4.7 Consensus size: 48
49191929 TAAGGTACCA
*
49191939 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTC-ATG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCGATGCT-G
* *
49191986 ATGCCATGTCCTAGACATGGTCTTACACT-GACT-ATCATAT--ATAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCAT-ATCTCGAT-GCTG
* * ** * *
49192033 ATG-CATGTCCCAGACAT-GTCTTACACTTGCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCGATGCTG
*
49192079 ATG-CATGTCCCAGACAT-GTCTTACACTAGAACTC--GTCTCGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CTCATATCTCGATGCTG
*
49192125 ATGCCATGTCCCAAACATGGTCTTACACTAGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
49192159 TCATAATGTG
Statistics
Matches: 147, Mismatches: 14, Indels: 25
0.79 0.08 0.13
Matches are distributed among these distances:
45 14 0.10
46 67 0.46
47 51 0.35
48 15 0.10
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCGATGCTG
Found at i:49198998 original size:66 final size:68
Alignment explanation
Indices: 49198920--49199106 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
49198910 TAGTACCACT
*
49198920 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
49198982 CACG
65 CACG
49198986 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
49199051 ATCACG
63 ATCACG
49199057 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
49199107 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:49199031 original size:71 final size:71
Alignment explanation
Indices: 49198943--49199106 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49198933 CGATTTGTCT
49198943 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49199008 CTTTCA
66 CTTTCA
49199014 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49199079 CTTTCA
66 CTTTCA
49199085 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49199107 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49199144 original size:71 final size:70
Alignment explanation
Indices: 49198943--49199140 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49198933 CGATTTGTCT
* * * *
49198943 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49199008 CTTTCA
65 CTTTCA
* * * *
49199014 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49199079 CTTTCA
65 CTTTCA
* *
49199085 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49199141 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49206562 original size:66 final size:68
Alignment explanation
Indices: 49206484--49206670 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
49206474 TAGTACCACT
*
49206484 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
49206546 CACG
65 CACG
49206550 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
49206615 ATCACG
63 ATCACG
49206621 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
49206671 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:49206595 original size:71 final size:71
Alignment explanation
Indices: 49206507--49206670 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49206497 CGATTTGTCT
49206507 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49206572 CTTTCA
66 CTTTCA
49206578 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49206643 CTTTCA
66 CTTTCA
49206649 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49206671 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49206708 original size:71 final size:70
Alignment explanation
Indices: 49206507--49206704 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49206497 CGATTTGTCT
* * * *
49206507 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49206572 CTTTCA
65 CTTTCA
* * * *
49206578 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49206643 CTTTCA
65 CTTTCA
* *
49206649 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49206705 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49209565 original size:47 final size:47
Alignment explanation
Indices: 49209490--49209669 Score: 170
Period size: 47 Copynumber: 3.8 Consensus size: 47
49209480 GTGGGTAAGG
**
49209490 TGCCGATGCCATGTCCCAGACACAGTCTTACACTAGCTCATATCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCA
* * *
49209537 TGTCGATGCCATGTCCTAGACATGGTCTTACACTAACT-ATCATCTCGCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCT--CA
* * * **
49209586 -GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-A
* * * *
49209631 TGCCGATGCCATGTCCCAAATATGTTCTTACACTGGCTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
49209670 TCATAATGTG
Statistics
Matches: 108, Mismatches: 17, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 23 0.21
47 63 0.58
48 18 0.17
49 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCA
Found at i:49222408 original size:28 final size:29
Alignment explanation
Indices: 49222341--49222441 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
49222331 ATAGTGAATC
*
49222341 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
49222370 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
49222398 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
49222428 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49222442 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:49224606 original size:25 final size:25
Alignment explanation
Indices: 49224577--49224648 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
49224567 TTATTTACAT
49224577 ATATGCTCACACGAGCTGTGAAT-A
1 ATATGCTCACACGAGCTGTGAATCA
*
49224601 AGTATGCTCACACGAGTTGTGAATCA
1 A-TATGCTCACACGAGCTGTGAATCA
*
49224627 ATATGCTCACATGAGCTGTGAA
1 ATATGCTCACACGAGCTGTGAA
49224649 AATAGGCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (25 bp):
ATATGCTCACACGAGCTGTGAATCA
Found at i:49227140 original size:26 final size:26
Alignment explanation
Indices: 49227082--49227168 Score: 70
Period size: 26 Copynumber: 3.3 Consensus size: 26
49227072 ACCTCAATTC
* * *
49227082 GCTAAGCCCATTGGCTATCCCTA-TTT
1 GCTAGGCCCATTGGCGAT-CCTAGCTT
* * *
49227108 GCCAGGCCCATTGGTGATCTTAGCTCT
1 GCTAGGCCCATTGGCGATCCTAGCT-T
**
49227135 -CTAGGCTTATTGGCGATCCTAGCTT
1 GCTAGGCCCATTGGCGATCCTAGCTT
49227160 GCTAGGCCC
1 GCTAGGCCC
49227169 CAAACTCCTG
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
25 4 0.09
26 40 0.89
27 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.23, T:0.31
Consensus pattern (26 bp):
GCTAGGCCCATTGGCGATCCTAGCTT
Found at i:49228636 original size:7 final size:7
Alignment explanation
Indices: 49228624--49228648 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49228614 AAGTCGACTC
49228624 TTGTATG
1 TTGTATG
49228631 TTGTATG
1 TTGTATG
49228638 TTGTATG
1 TTGTATG
49228645 TTGT
1 TTGT
49228649 TCATCCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TTGTATG
Found at i:49228967 original size:27 final size:27
Alignment explanation
Indices: 49228926--49228982 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
49228916 CGGGGCTTTA
* *
49228926 AACACTAAAGGGATAGGATGTGTGGAG
1 AACACTAAAGCGATAGGATGTATGGAG
*
49228953 AACACTAAAGCGATAGTATGTATGGAG
1 AACACTAAAGCGATAGGATGTATGGAG
49228980 AAC
1 AAC
49228983 TCAGAAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.30, T:0.19
Consensus pattern (27 bp):
AACACTAAAGCGATAGGATGTATGGAG
Found at i:49232466 original size:28 final size:27
Alignment explanation
Indices: 49232403--49232472 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
49232393 ATAGTGAGTC
49232403 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
49232430 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
49232458 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49232473 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:49239642 original size:57 final size:57
Alignment explanation
Indices: 49239575--49239715 Score: 192
Period size: 57 Copynumber: 2.5 Consensus size: 57
49239565 TATCATATAA
* * * *
49239575 TAGGAGTACCAGTTCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGTGCTTAAT
1 TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
* * *
49239632 TAGGATTACCAGTCCAGGCTAAATCCTTTCTCTAACATATGCTCAGAAGAGCTCAAT
1 TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
* * *
49239689 TAGAATTGCCAGTCCAAGCTAAATCCT
1 TAGGATTACCAGTCCAGGCTAAATCCT
49239716 ATCTATAATG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 74 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (57 bp):
TAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAAT
Found at i:49241901 original size:71 final size:71
Alignment explanation
Indices: 49241816--49241979 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
49241806 CGATTTGTCT
49241816 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49241881 CTTTCA
66 CTTTCA
*
49241887 TGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49241952 CTTTCA
66 CTTTCA
49241958 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49241980 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49242017 original size:71 final size:70
Alignment explanation
Indices: 49241816--49242013 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
49241806 CGATTTGTCT
* * * *
49241816 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49241881 CTTTCA
65 CTTTCA
* * * * *
49241887 TGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49241952 CTTTCA
65 CTTTCA
* *
49241958 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49242014 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49247987 original size:71 final size:71
Alignment explanation
Indices: 49247903--49248066 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49247893 CGATTTGTCT
49247903 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49247968 CTTTCA
66 CTTTCA
49247974 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49248039 CTTTCA
66 CTTTCA
49248045 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49248067 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49248104 original size:71 final size:70
Alignment explanation
Indices: 49247903--49248100 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49247893 CGATTTGTCT
* * * *
49247903 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49247968 CTTTCA
65 CTTTCA
* * * *
49247974 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49248039 CTTTCA
65 CTTTCA
* *
49248045 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49248101 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49254071 original size:71 final size:71
Alignment explanation
Indices: 49253987--49254150 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49253977 CGATTTGTCT
49253987 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49254052 CTTTCA
66 CTTTCA
49254058 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49254123 CTTTCA
66 CTTTCA
49254129 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49254151 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49254188 original size:71 final size:70
Alignment explanation
Indices: 49253987--49254184 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49253977 CGATTTGTCT
* * * *
49253987 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49254052 CTTTCA
65 CTTTCA
* * * *
49254058 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49254123 CTTTCA
65 CTTTCA
* *
49254129 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49254185 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49257014 original size:27 final size:27
Alignment explanation
Indices: 49256984--49257098 Score: 70
Period size: 27 Copynumber: 4.3 Consensus size: 27
49256974 CGACTTGTAA
49256984 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
49257011 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
* *** * ** *
49257038 AATTACTATTTTACCCTCAATTTTTAA
1 AATTACCAAAGTACCCTCGATTTACAG
****
49257065 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
49257092 AATTACC
1 AATTACC
49257099 GTTTTACCCT
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 2 0.03
27 69 0.97
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:49257042 original size:54 final size:54
Alignment explanation
Indices: 49256984--49257098 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
49256974 CGACTTGTAA
* *
49256984 AATTACCAAAGTACTCC-CGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTAC-CCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAG
* *** **
49257038 AATTACTATTTTACCCTCAATTTTTAAAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAG
49257092 AATTACC
1 AATTACC
49257099 GTTTTACCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAG
Found at i:49257099 original size:27 final size:27
Alignment explanation
Indices: 49257001--49257113 Score: 163
Period size: 27 Copynumber: 4.2 Consensus size: 27
49256991 AAAGTACTCC
49257001 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
49257028 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
49257055 CAATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
49257082 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
49257109 TGATT
1 CGATT
49257114 GTGAAATTAC
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:49257312 original size:27 final size:27
Alignment explanation
Indices: 49257118--49257312 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
49257108 TTGATTGTGA
*
49257118 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49257145 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
49257172 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49257199 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49257226 AATTATCGAAATACCCTTGT-GGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49257252 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
49257279 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
49257306 AATTACC
1 AATTACC
49257313 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.15
27 120 0.85
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:49257557 original size:27 final size:26
Alignment explanation
Indices: 49257515--49257593 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
49257505 GGAAGCGTTC
* *
49257515 TGGTGGCTATGGCACAAATATCTGTTT
1 TGGTGGCTCTGCCAC-AATATCTGTTT
49257542 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TT
* * *
49257569 TGGTGACTCAGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
49257594 GACCGATCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.22
27 36 0.78
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTT
Found at i:49257713 original size:22 final size:22
Alignment explanation
Indices: 49257681--49257739 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
49257671 CCCGTTATTA
*
49257681 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
49257703 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
49257725 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
49257740 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:49257958 original size:27 final size:28
Alignment explanation
Indices: 49257904--49257972 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
49257894 TAGGTGGGTT
* * *
49257904 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTATTCTAGTGACTC
49257931 TGCCACAATATCTGTA-TCTAGTGACTC
1 TGCCACAATATCTGTATTCTAGTGACTC
* *
49257958 TGTCACGATATCTGT
1 TGCCACAATATCTGT
49257973 TCTGGCAGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (28 bp):
TGCCACAATATCTGTATTCTAGTGACTC
Found at i:49258104 original size:6 final size:6
Alignment explanation
Indices: 49258095--49258178 Score: 84
Period size: 6 Copynumber: 13.8 Consensus size: 6
49258085 TTGCATTCAC
* * *
49258095 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
49258144 ATAT-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
49258179 CATTTTGGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
5 4 0.06
6 56 0.86
7 3 0.05
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:49258151 original size:24 final size:25
Alignment explanation
Indices: 49258095--49258161 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
49258085 TTGCATTCAC
49258095 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
49258120 ATTCTGATTCTGATTCTGTTA-CTA
1 ATTCTGATTCTGATTCTGTCACCTA
49258144 ATAT-TGATTCTGATTCTG
1 AT-TCTGATTCTGATTCTG
49258162 ATTCTGATTC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:49258175 original size:24 final size:23
Alignment explanation
Indices: 49258095--49258199 Score: 104
Period size: 24 Copynumber: 4.3 Consensus size: 23
49258085 TTGCATTCAC
*
49258095 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGT--TCTA
49258120 ATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGTT-CTA
*
49258144 ATAT-TGATTCTGATTCTGATTCTG
1 AT-TCTGATTCTGATTCTG-TTCTA
* * *
49258168 ATTCTGATTCTCATTTTGGTTCCA
1 ATTCTGATTCTGATTCT-GTTCTA
49258192 ATTCTGAT
1 ATTCTGAT
49258200 AATGTTTCTT
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
23 1 0.01
24 45 0.65
25 23 0.33
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (23 bp):
ATTCTGATTCTGATTCTGTTCTA
Done.