Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 179 of 444
Found at i:49953693 original size:27 final size:28
Alignment explanation
Indices: 49953649--49953717 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
49953639 ATAGTGAGTC
49953649 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
49953675 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
49953703 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49953718 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.17
27 14 0.35
28 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49959711 original size:29 final size:29
Alignment explanation
Indices: 49959649--49959751 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
49959639 GTGACGAGAT
* * *
49959649 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
49959678 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
49959707 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
49959736 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49959752 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:49966372 original size:39 final size:40
Alignment explanation
Indices: 49966249--49966414 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
49966239 AAATTGAATG
* * *
49966249 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
49966288 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
49966328 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
49966367 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
49966407 ATATCCGG
1 ATATCCGG
49966415 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:49966381 original size:79 final size:79
Alignment explanation
Indices: 49966249--49966398 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
49966239 AAATTGAATG
*
49966249 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
49966314 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
49966328 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
49966391 ATTTGTGC
64 AATTGTGC
49966399 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:49973421 original size:40 final size:40
Alignment explanation
Indices: 49973366--49973533 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
49973356 CGAATGATAC
* *
49973366 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
49973406 CCGGGATAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
49973446 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
49973486 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
49973526 CC-GGCTAA
1 CCGGGCTAA
49973534 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
39 6 0.06
40 95 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:49973527 original size:80 final size:80
Alignment explanation
Indices: 49973366--49973533 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
49973356 CGAATGATAC
* * ** *
49973366 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGATAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGATAAGACCCGAAGGCATTCG
*
49973431 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
49973446 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGATAAGACCCGAAGGC-ATTC
** *
49973510 GTGCTTGTGGTTGTAT
65 GTGCGAGTGGTTATAT
49973526 CC-GGCTAA
1 CCGGGCTAA
49973534 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 66 0.88
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGATAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:49977376 original size:39 final size:40
Alignment explanation
Indices: 49977332--49977496 Score: 149
Period size: 39 Copynumber: 4.2 Consensus size: 40
49977322 CGGAATATAA
49977332 CCGGAT-TAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
49977371 CCGGATA-GATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49977410 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
49977450 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49977489 CCGGATAT
1 CCGGATAT
49977497 CATTCAATTT
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
38 1 0.01
39 52 0.51
40 48 0.48
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49984845 original size:40 final size:40
Alignment explanation
Indices: 49984790--49984997 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
49984780 TGAATGATAC
* *
49984790 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
49984830 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
49984870 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
49984910 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
49984950 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
49984990 CC-GGCTAA
1 CCGGGCTAA
49984998 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:49990303 original size:40 final size:40
Alignment explanation
Indices: 49990245--49990462 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
49990235 CGGATGATAA
* *
49990245 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
49990285 CCAGGCTAAGTCCCGAAGGCATTTGTGCGATTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49990325 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49990365 CCGGGCTAGGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49990405 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49990445 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49990463 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 144 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49992184 original size:4 final size:4
Alignment explanation
Indices: 49992170--49992201 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
49992160 AGTGTAGGTG
49992170 TATT T-TT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT T
49992202 TAGTATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TATT
Found at i:49993295 original size:28 final size:28
Alignment explanation
Indices: 49993213--49993302 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 28
49993203 TGAGCATGAC
*
49993213 TATAAATGTGAATTGGGCCT-GATGAGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
49993242 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
49993271 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
49993299 TATA
1 TATA
49993303 CAGGTATGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 21 0.38
29 35 0.62
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:49997013 original size:15 final size:15
Alignment explanation
Indices: 49996981--49997009 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49996971 ATTTTTTGTG
49996981 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
49996996 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
49997010 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:49998230 original size:27 final size:27
Alignment explanation
Indices: 49998206--49998384 Score: 225
Period size: 27 Copynumber: 6.6 Consensus size: 27
49998196 TTAGTTTACC
* * *
49998206 AAATAACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
*
49998233 AAATTACCAAAATACCCCTAGTTTGA-A
1 AAATTACCAAAATACCCCTGGTTT-ATA
* * *
49998260 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*
49998287 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
*
49998314 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
49998341 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
**
49998368 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
49998385 TAGACCTGTA
Statistics
Matches: 137, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:49998272 original size:54 final size:53
Alignment explanation
Indices: 49998214--49998385 Score: 254
Period size: 54 Copynumber: 3.2 Consensus size: 53
49998204 CCAAATAACC
* *
49998214 AAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGAAAAATTACT
1 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACT
* *
49998268 AAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACT
* *
49998322 AAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACT
1 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTG-TTTGTAAAATTACT
*
49998376 GAAATACCCT
1 AAAATACCCT
49998386 AGACCTGTAA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 105 0.99
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (53 bp):
AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGTTTGTAAAATTACT
Found at i:49998437 original size:27 final size:27
Alignment explanation
Indices: 49998206--49998455 Score: 222
Period size: 27 Copynumber: 9.3 Consensus size: 27
49998196 TTAGTTTACC
* * * **
49998206 AAATAACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
49998233 AAATTACCAAAATACCCCT-AGTTTGAA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * *
49998260 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
*
49998287 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
49998314 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
49998341 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** **
49998368 AAATTACTGAAATA-CCCTAGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
49998395 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
49998422 AAATTACCAAAGTA-CCCTAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
49998448 GAATTACC
1 AAATTACC
49998456 GTTTTACCCT
Statistics
Matches: 190, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
26 18 0.09
27 171 0.90
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:49998481 original size:27 final size:27
Alignment explanation
Indices: 49998457--49998626 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
49998447 AGAATTACCG
* *
49998457 TTTTACCCTTGACTTACAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
* *
49998484 TTTTACCCTCGATTGACAGAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
* *
49998511 TTTTACCTTCGATTTTCAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
*
49998538 TTTTACCCTCGATTTACAAAATTACTG
1 TTTTACCCTCGATTTACAAAATTACTA
* * *
49998565 TTTTACCCTCAATTTACAGAATTACTG
1 TTTTACCCTCGATTTACAAAATTACTA
* *
49998592 TTTTACCCTCGATTTATAAAATTACCA
1 TTTTACCCTCGATTTACAAAATTACTA
49998619 TTTTACCC
1 TTTTACCC
49998627 CTAGGGTGTT
Statistics
Matches: 125, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACTA
Found at i:49998557 original size:81 final size:81
Alignment explanation
Indices: 49998441--49998626 Score: 266
Period size: 81 Copynumber: 2.3 Consensus size: 81
49998431 AAGTACCCTA
* * * *
49998441 ATTTATAGAATTACCGTTTTACCCTTGACTTACAAAATTACTATTTTACCCTCGATTGACAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGACTTACAAAATTACTATTTTACCCTCAATTGACAGAAT
*
49998506 TACTATTTTACCTTCG
66 TACTATTTTACCCTCG
* * * *
49998522 ATTT-TCAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTACAGAA
1 ATTTAT-AAAATTACCATTTTACCCTCGACTTACAAAATTACTATTTTACCCTCAATTGACAGAA
*
49998586 TTACTGTTTTACCCTCG
65 TTACTATTTTACCCTCG
49998603 ATTTATAAAATTACCATTTTACCC
1 ATTTATAAAATTACCATTTTACCC
49998627 CTAGGGTGTT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 90 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (81 bp):
ATTTATAAAATTACCATTTTACCCTCGACTTACAAAATTACTATTTTACCCTCAATTGACAGAAT
TACTATTTTACCCTCG
Found at i:49998907 original size:27 final size:26
Alignment explanation
Indices: 49998863--49998914 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49998853 CTCGCTGCAA
*
49998863 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
49998890 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
49998915 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:49999169 original size:6 final size:6
Alignment explanation
Indices: 49999133--49999253 Score: 88
Period size: 6 Copynumber: 19.8 Consensus size: 6
49999123 TTGCATTCAC
* *
49999133 ATTCTG ATT-TG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
49999181 -TCACCTA ATTCTA ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
49999231 ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
49999254 AGTTTTGATA
Statistics
Matches: 91, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
5 9 0.10
6 71 0.78
7 8 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49999193 original size:19 final size:19
Alignment explanation
Indices: 49999166--49999236 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
49999156 GATACTGATT
49999166 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* *
49999185 CTAATTCTAATTCTG--ATT
1 CTGATTCTAATTCTGTCA-C
*
49999203 CTGATTCTGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
49999222 CTGATTCTGATTCTG
1 CTGATTCTAATTCTG
49999237 ATTCTCATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.30
19 29 0.66
20 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.45
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:49999201 original size:37 final size:37
Alignment explanation
Indices: 49999160--49999241 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
49999150 TTACCTGATA
49999160 CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
* * *
49999197 CTGATTCTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
49999234 CTGATTCT
1 CTGATTCT
49999242 CATTTTGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
Found at i:49999229 original size:31 final size:31
Alignment explanation
Indices: 49999133--49999241 Score: 121
Period size: 31 Copynumber: 3.4 Consensus size: 31
49999123 TTGCATTCAC
* *
49999133 ATTCTGATT-TGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
* *
49999163 ATTCTGATTCTAATTCTGTCACCTAATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCA-C-----CTGATTCTG
49999200 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
49999231 ATTCTGATTCT
1 ATTCTGATTCT
49999242 CATTTTGATT
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
30 9 0.14
31 28 0.42
32 1 0.02
36 1 0.02
37 27 0.41
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:49999251 original size:37 final size:36
Alignment explanation
Indices: 49999140--49999253 Score: 130
Period size: 37 Copynumber: 3.2 Consensus size: 36
49999130 CACATTCTGA
* *
49999140 TTTGATTCTGTTACCTGATACTGATTCTGATTCTA-
1 TTTGATTCTGTCACCTGATTCTGATTCTGATTCTAT
* *
49999175 ----ATTCTGTCACCTAATTCTAATTCTGATTCTGAT
1 TTTGATTCTGTCACCTGATTCTGATTCTGATTCT-AT
*
49999208 TCTGATTCTGTCACCTGATTCTGATTCTGATTCTCAT
1 TTTGATTCTGTCACCTGATTCTGATTCTGATTCT-AT
49999245 TTTGATTCT
1 TTTGATTCT
49999254 AGTTTTGATA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
31 26 0.40
32 1 0.02
37 38 0.58
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.48
Consensus pattern (36 bp):
TTTGATTCTGTCACCTGATTCTGATTCTGATTCTAT
Found at i:50000795 original size:56 final size:56
Alignment explanation
Indices: 50000699--50000806 Score: 148
Period size: 56 Copynumber: 1.9 Consensus size: 56
50000689 CCATGGCATT
* * *
50000699 GATATATGTGTGCGAGTAAGACCACGTTTTATAAGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCACGTCTGAGAAGTTGGCATCGATATGTGACTCC
*
50000755 GATATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA
1 GATATATGTGTGCGAGTAAGACCAC-GTCTGAGA-AGTTGGCATCGATATGTGA
50000807 TTACATGTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
55 1 0.02
56 43 0.93
57 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTCTGAGAAGTTGGCATCGATATGTGACTCC
Found at i:50007337 original size:81 final size:81
Alignment explanation
Indices: 50007222--50007399 Score: 225
Period size: 81 Copynumber: 2.2 Consensus size: 81
50007212 TGAAATGCCT
* * ** * * *
50007222 TCGATTTGTAGAATTACCCTTTTATGCTCAATTTATAGAATTATCATTTCACCCTC-GATTTACA
1 TCGATTTGTAAAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCAG-TTTACA
50007286 AAATTACCGTTTTACCA
65 AAATTACCGTTTTACCA
* * *
50007303 TCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAA
1 TCGATTTGTAAAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCAGTTTACAA
*
50007368 AATTACCGTTTTACCC
66 AATTACCGTTTTACCA
*
50007384 TC-AATTGTAAAATTAC
1 TCGATTTGTAAAATTAC
50007400 TGAAATACCC
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 12 0.14
81 70 0.84
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
TCGATTTGTAAAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCAGTTTACAA
AATTACCGTTTTACCA
Found at i:50007386 original size:27 final size:27
Alignment explanation
Indices: 50007233--50007385 Score: 182
Period size: 27 Copynumber: 5.7 Consensus size: 27
50007223 CGATTTGTAG
* ** * * *
50007233 AATTACCCTTTTATGCTCAATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* *
50007260 AATTATCATTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * *
50007287 AATTACCGTTTTACCATCGATTTATAA
1 AATTACCATTTTACCCTCGATTTACAA
50007314 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
50007341 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
*
50007368 AATTACCGTTTTACCCTC
1 AATTACCATTTTACCCTC
50007386 AATTGTAAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 107 0.99
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:50007524 original size:27 final size:27
Alignment explanation
Indices: 50007388--50007544 Score: 113
Period size: 27 Copynumber: 5.8 Consensus size: 27
50007378 TTACCCTCAA
**
50007388 TTGTAAAATTACTGAAATACCCCTG-T
1 TTGTAAAATTACCAAAATACCCCTGAT
** *
50007414 AGGATAGAATTACCAAAATACCCCT-AGT
1 TTG-TAAAATTACCAAAATACCCCTGA-T
* * *
50007442 TTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * * *
50007469 TTGTGAAATTACCGAAATA-CCTTCAAT
1 TTGTAAAATTACCAAAATACCCCT-GAT
*
50007496 TTGTAAAATTACCAAAATTCCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
** * *
50007523 TTACAAAAGTACAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
50007545 TTAACTTTCT
Statistics
Matches: 99, Mismatches: 26, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
26 3 0.03
27 91 0.92
28 5 0.05
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:50007736 original size:27 final size:28
Alignment explanation
Indices: 50007661--50007737 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
50007651 ACCCCTAATA
*
50007661 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
50007688 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
50007715 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
50007738 ATGTTCTGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:50008573 original size:25 final size:24
Alignment explanation
Indices: 50008535--50008604 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
50008525 AGGAAGTGCT
*
50008535 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
50008559 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
50008584 AGAAAGGGCTTTGTCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
50008605 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:50008617 original size:24 final size:24
Alignment explanation
Indices: 50008535--50008617 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
50008525 AGGAAGTGCT
* * *
50008535 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTATC
50008559 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTATC
*
50008584 AGAAAGGGCTTTGTCCC-AG-TTATT
1 A-AAAGGGCTTTG-CCCTAGTTTATC
50008608 AAAAGAGGCT
1 AAAAG-GGCT
50008618 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 34 0.67
26 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTATC
Found at i:50008810 original size:42 final size:42
Alignment explanation
Indices: 50008751--50008884 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
50008741 TAGTCTCCCC
50008751 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
50008793 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* * *
50008835 AAATGGGTTTGCATACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
50008877 AAATGGGC
1 AAATGGGC
50008885 CTAAGGGCCA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:50008943 original size:31 final size:31
Alignment explanation
Indices: 50008908--50009022 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
50008898 CGTTTACAGT
50008908 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
50008939 AAAGGCTTCGGGCTAGTGATGTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
50008970 AAAGGCTTCGGCCCAGTGATATGGTTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
50009001 AAAGGCTTCAGCCGAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
50009023 TTAAGACTAA
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.07
31 69 0.93
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:50016185 original size:47 final size:47
Alignment explanation
Indices: 50016131--50016603 Score: 671
Period size: 47 Copynumber: 10.1 Consensus size: 47
50016121 TTAGGATTTT
** * * * *
50016131 ATGTGATGAATGTGAATGTGTATACATGAGATAAGGCCGAATGTCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
50016178 ATGTGATGCATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
50016225 ATGTGATAAATGTGAACATGCATATGTGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50016272 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50016319 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
50016366 ATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50016413 ATGTGATGAATGTGAACATGCATATGA-GTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATAT-ATGTGATAAGGCCGAATGGCCA
50016460 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50016507 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
50016554 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
50016601 ATG
1 ATG
50016604 CGAAGTGTGT
Statistics
Matches: 384, Mismatches: 39, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 380 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:50016633 original size:46 final size:46
Alignment explanation
Indices: 50016577--50016713 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
50016567 GGAAGTGTAT
50016577 ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
* **
50016623 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
* * *
50016669 ATATGTGGTAAAGCCAAATGGCTAATGTG-AGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAG-TGTGTATGAGATG
50016714 TGTATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 80 0.99
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAGTGTGTATGAGATGG
Found at i:50019831 original size:21 final size:21
Alignment explanation
Indices: 50019801--50019848 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
50019791 TGTTAATGAG
* *
50019801 AGAAAATGAGCGAA-AAATAAA
1 AGAAATTGAGAGAAGAAA-AAA
*
50019822 AGAAATTGAGAGAAGGAAAAA
1 AGAAATTGAGAGAAGAAAAAA
50019843 AGAAAT
1 AGAAAT
50019849 GAAAGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.23, T:0.10
Consensus pattern (21 bp):
AGAAATTGAGAGAAGAAAAAA
Found at i:50019858 original size:16 final size:16
Alignment explanation
Indices: 50019837--50019901 Score: 62
Period size: 15 Copynumber: 4.0 Consensus size: 16
50019827 TTGAGAGAAG
50019837 GAAAAAAGAAATGAAA
1 GAAAAAAGAAATGAAA
50019853 G-AAAAAGAAATTGAAA
1 GAAAAAAGAAA-TGAAA
* **
50019869 GCAAAAGAGAGCTTGAAA
1 G-AAAAAAGA-AATGAAA
50019887 GAAAAAAG-AATGAAA
1 GAAAAAAGAAATGAAA
50019902 AAGAATACGA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
15 14 0.36
16 7 0.18
17 6 0.15
18 12 0.31
ACGTcount: A:0.66, C:0.03, G:0.22, T:0.09
Consensus pattern (16 bp):
GAAAAAAGAAATGAAA
Found at i:50019892 original size:18 final size:16
Alignment explanation
Indices: 50019839--50019892 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 16
50019829 GAGAGAAGGA
50019839 AAAAAGAAA-TGAAAG
1 AAAAAGAAATTGAAAG
50019854 AAAAAGAAATTGAAAG
1 AAAAAGAAATTGAAAG
**
50019870 CAAAAGAGAGCTTGAAAG
1 -AAAA-AGAAATTGAAAG
50019888 AAAAA
1 AAAAA
50019893 AGAATGAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
15 9 0.26
16 7 0.21
17 8 0.24
18 10 0.29
ACGTcount: A:0.67, C:0.04, G:0.20, T:0.09
Consensus pattern (16 bp):
AAAAAGAAATTGAAAG
Found at i:50021681 original size:38 final size:39
Alignment explanation
Indices: 50021629--50021737 Score: 175
Period size: 38 Copynumber: 2.8 Consensus size: 39
50021619 TATTATAGTT
50021629 TGAGTATTTAATTATGTCATAATTTGAACATCATTAATA
1 TGAGTATTTAATTATGTCATAATTTGAACATCATTAATA
*
50021668 TGAGT-TTTAATTATGTCATAATCTGAACATCATTAATA
1 TGAGTATTTAATTATGTCATAATTTGAACATCATTAATA
* * *
50021706 TGGGTCTTTAATTATGTCATAGTTTGAACATC
1 TGAGTATTTAATTATGTCATAATTTGAACATC
50021738 TCTAATACTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
38 36 0.55
39 29 0.45
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (39 bp):
TGAGTATTTAATTATGTCATAATTTGAACATCATTAATA
Found at i:50025121 original size:34 final size:34
Alignment explanation
Indices: 50025076--50025150 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
50025066 CAATATTAAA
*
50025076 TATGCAGTAGGGCCTTAGCCCATCACAGTATCAG
1 TATGCAGTAGGGCCTTAACCCATCACAGTATCAG
*
50025110 TATGCATTAGGGCCTTAACCCATCACAGTATCAG
1 TATGCAGTAGGGCCTTAACCCATCACAGTATCAG
50025144 TA-GCAGT
1 TATGCAGT
50025151 CATGCAGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 4 0.11
34 34 0.89
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (34 bp):
TATGCAGTAGGGCCTTAACCCATCACAGTATCAG
Found at i:50027865 original size:19 final size:19
Alignment explanation
Indices: 50027830--50027875 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
50027820 CAGAGAACAG
* *
50027830 AGAAGAAGAGAAAGAAAGA
1 AGAAGAAGAAAAAGAAAAA
50027849 AGAAGAA-AAAAATGAAAAA
1 AGAAGAAGAAAAA-GAAAAA
50027868 AGAAGAAG
1 AGAAGAAG
50027876 TGGAGGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (19 bp):
AGAAGAAGAAAAAGAAAAA
Found at i:50031749 original size:35 final size:35
Alignment explanation
Indices: 50031708--50031775 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
50031698 TTTAACCTGA
50031708 AACTCGGCTAAAAAGCTACAATAATCAAATAAACT
1 AACTCGGCTAAAAAGCTACAATAATCAAATAAACT
* *
50031743 AACTCGGCTAATAAGCTACAATCATCAAATAAA
1 AACTCGGCTAAAAAGCTACAATAATCAAATAAA
50031776 TTAAGTCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (35 bp):
AACTCGGCTAAAAAGCTACAATAATCAAATAAACT
Found at i:50034977 original size:16 final size:17
Alignment explanation
Indices: 50034956--50034988 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50034946 AGTCTCTAGT
*
50034956 AGTTT-ACTATAGTTTC
1 AGTTTAACTACAGTTTC
50034972 AGTTTAACTACAGTTTC
1 AGTTTAACTACAGTTTC
50034989 CAACATATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (17 bp):
AGTTTAACTACAGTTTC
Found at i:50035312 original size:34 final size:34
Alignment explanation
Indices: 50035268--50035341 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
50035258 AGTAAAAAAA
50035268 ATGCAGTAGGGCCTTAAACCATCACAGTATCAGT
1 ATGCAGTAGGGCCTTAAACCATCACAGTATCAGT
* ** *
50035302 ATGCATTAGGGCCTTAGGCCATCACAGTATCAAT
1 ATGCAGTAGGGCCTTAAACCATCACAGTATCAGT
50035336 A-GCAGT
1 ATGCAGT
50035342 CATGCCGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (34 bp):
ATGCAGTAGGGCCTTAAACCATCACAGTATCAGT
Found at i:50037629 original size:14 final size:15
Alignment explanation
Indices: 50037587--50037635 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
50037577 TCCACTGACT
* *
50037587 TTAATATATATATACA
1 TTAATCTATATTTA-A
*
50037603 TTAATTTATATTTAA
1 TTAATCTATATTTAA
50037618 TTAATCTA-ATTTAA
1 TTAATCTATATTTAA
50037632 TTAA
1 TTAA
50037636 ATTAATTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
14 10 0.33
15 8 0.27
16 12 0.40
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAATCTATATTTAA
Found at i:50037840 original size:23 final size:23
Alignment explanation
Indices: 50037814--50037871 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 23
50037804 TGTATTTTTA
50037814 CAATTTAATCAAATTT-TAAATAT-
1 CAATTTAAT--AATTTCTAAATATC
*
50037837 CAATATAATAATTTCGTAAATATC
1 CAATTTAATAATTTC-TAAATATC
50037861 CATATTTAATA
1 CA-ATTTAATA
50037872 TTTATAGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 5 0.17
23 15 0.52
24 2 0.07
25 7 0.24
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (23 bp):
CAATTTAATAATTTCTAAATATC
Found at i:50038157 original size:3 final size:3
Alignment explanation
Indices: 50038149--50038198 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
50038139 TTAACATTTG
50038149 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
50038195 AAT A
1 AAT A
50038199 CACGAAGCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:50047850 original size:18 final size:18
Alignment explanation
Indices: 50047827--50047862 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50047817 TGTGTTATCA
50047827 GGTTGCTTACTGATTTTC
1 GGTTGCTTACTGATTTTC
50047845 GGTTGCTTACTGATTTTC
1 GGTTGCTTACTGATTTTC
50047863 TTTTCATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (18 bp):
GGTTGCTTACTGATTTTC
Found at i:50058272 original size:34 final size:34
Alignment explanation
Indices: 50058234--50058302 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
50058224 CCTAGAGATA
50058234 GTGTAAAAGCTATGAAAAAAAGAAGAGAATGAGC
1 GTGTAAAAGCTATGAAAAAAAGAAGAGAATGAGC
50058268 GTGTAAAAGCTATGAAAAAAAGAAGAGAATGAGC
1 GTGTAAAAGCTATGAAAAAAAGAAGAGAATGAGC
50058302 G
1 G
50058303 AGCTTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.52, C:0.06, G:0.28, T:0.14
Consensus pattern (34 bp):
GTGTAAAAGCTATGAAAAAAAGAAGAGAATGAGC
Found at i:50060759 original size:40 final size:40
Alignment explanation
Indices: 50060700--50060885 Score: 193
Period size: 40 Copynumber: 4.6 Consensus size: 40
50060690 TCGAATGATG
* * * *
50060700 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCC-GAAGGCATTTGTGCTGAGTTACTAAA
50060740 TCCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCTGAGTTACTAAA
50060780 TCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
50060820 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCTGAGTTACTA-AA
* * *
50060861 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
50060886 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
39 1 0.01
40 117 0.90
41 12 0.09
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:50060899 original size:40 final size:40
Alignment explanation
Indices: 50060734--50060904 Score: 118
Period size: 40 Copynumber: 4.3 Consensus size: 40
50060724 GTGCTAAGTG
* * ** *
50060734 ACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTT
1 ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCT
* *** *
50060774 ACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTT
1 ACTATAA-CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCT
* **
50060814 ACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT
1 ACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCT
* *
50060854 ACTATAACCGGGCTATGTCCCGAAGGTATTTGAACGAG-T
1 ACTATAACCGGGCTAAGTCCCGAAGGCATTTGAACGAGCT
*
50060893 AGCTATATCCGG
1 A-CTATAACCGG
50060905 TTAAACTCCG
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 4 0.03
40 109 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
ACTATAACCGGGCTAAGTCCCGAAGGCATTTGAACGAGCT
Found at i:50060903 original size:80 final size:80
Alignment explanation
Indices: 50060734--50060918 Score: 193
Period size: 80 Copynumber: 2.3 Consensus size: 80
50060724 GTGCTAAGTG
** *
50060734 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
***
50060799 GCATTTGTGTGAGTT
66 GCATTTGAACGAGTT
* * *
50060814 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
50060876 AAGGTATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
50060893 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
50060919 TATGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
79 17 0.19
80 69 0.78
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:50062646 original size:8 final size:8
Alignment explanation
Indices: 50062621--50062669 Score: 71
Period size: 8 Copynumber: 5.9 Consensus size: 8
50062611 TTCTCCTAAA
50062621 TTTTTAATT
1 TTTTTAA-T
50062630 TTATTTAAT
1 TT-TTTAAT
50062639 TTTTTAAT
1 TTTTTAAT
50062647 TTTTTAAT
1 TTTTTAAT
50062655 TTTTTAAT
1 TTTTTAAT
*
50062663 TTATTAA
1 TTTTTAA
50062670 ATCATTAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
8 28 0.74
9 5 0.13
10 5 0.13
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTAAT
Found at i:50069051 original size:45 final size:45
Alignment explanation
Indices: 50069014--50069217 Score: 329
Period size: 45 Copynumber: 4.5 Consensus size: 45
50069004 GATTCCAAAG
50069014 CGTCTTTCAG-CGATGGTCTTACTCAATAGAATCGTGATGCCATAA
1 CGTCTTTCAGTC-ATGGTCTTACTCAATAGAATCGTGATGCCATAA
* * *
50069059 CGTCTTTTAGTTATGGTCTTACTCAATAGAATTGTGATGCCATAA
1 CGTCTTTCAGTCATGGTCTTACTCAATAGAATCGTGATGCCATAA
*
50069104 CGTCTTTCAGTCATGGTCTTACTTAATAGAATCGTGATGCCATAA
1 CGTCTTTCAGTCATGGTCTTACTCAATAGAATCGTGATGCCATAA
* **
50069149 CATCTTTCAGTCATGGTCTTACTTGATAGAATCGTGATGCCATAA
1 CGTCTTTCAGTCATGGTCTTACTCAATAGAATCGTGATGCCATAA
50069194 CGTCTTTCAGTCATGGTCTTACTC
1 CGTCTTTCAGTCATGGTCTTACTC
50069218 GTTTCTGGTA
Statistics
Matches: 147, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 147 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (45 bp):
CGTCTTTCAGTCATGGTCTTACTCAATAGAATCGTGATGCCATAA
Found at i:50069076 original size:90 final size:90
Alignment explanation
Indices: 50068961--50069217 Score: 331
Period size: 90 Copynumber: 2.9 Consensus size: 90
50068951 TTCGTCGCGT
** * * ** * *
50068961 TGCCATAGTGTCTTTTAGCCATGGTCTTATTCTTTTG-ATTGGTGATTCCA-AAGCGTCTTTCAG
1 TGCCATAACGTCTTTTAGTCATGGTCTTACTCAATAGAATT-GTGATGCCATAA-CGTCTTTCAG
50069024 -CGATGGTCTTACTCAATAGAATCGTGA
64 TC-ATGGTCTTACTCAATAGAATCGTGA
*
50069051 TGCCATAACGTCTTTTAGTTATGGTCTTACTCAATAGAATTGTGATGCCATAACGTCTTTCAGTC
1 TGCCATAACGTCTTTTAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACGTCTTTCAGTC
*
50069116 ATGGTCTTACTTAATAGAATCGTGA
66 ATGGTCTTACTCAATAGAATCGTGA
* * ** *
50069141 TGCCATAACATCTTTCAGTCATGGTCTTACTTGATAGAATCGTGATGCCATAACGTCTTTCAGTC
1 TGCCATAACGTCTTTTAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACGTCTTTCAGTC
50069206 ATGGTCTTACTC
66 ATGGTCTTACTC
50069218 GTTTCTGGTA
Statistics
Matches: 147, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
90 141 0.96
91 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (90 bp):
TGCCATAACGTCTTTTAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACGTCTTTCAGTC
ATGGTCTTACTCAATAGAATCGTGA
Found at i:50076286 original size:45 final size:45
Alignment explanation
Indices: 50076205--50076404 Score: 224
Period size: 45 Copynumber: 4.4 Consensus size: 45
50076195 TGCCATAGTG
* * * * * ** *
50076205 TCTTTCAACCATGGTCTTATTCGTTTGATTGGTGATGTCATAGCA
1 TCTTTCAATCATGGTCTTACTCGATAGAATCATGATGTCATAACA
*
50076250 TCTTTCAAAT-ATGGTCTTACTCGATAGAATCATGATGTCATAACG
1 TCTTTC-AATCATGGTCTTACTCGATAGAATCATGATGTCATAACA
* * * *
50076295 TCTTTCAGTCATGGTTTTACCCGATAGAAT-AGTGATGCCATAACA
1 TCTTTCAATCATGGTCTTACTCGATAGAATCA-TGATGTCATAACA
* *
50076340 TCTTTCAATCATGGTCTTACTCGATAGAATCATAATGTCATAACG
1 TCTTTCAATCATGGTCTTACTCGATAGAATCATGATGTCATAACA
*
50076385 TCTTTCAGTCATGGTCTTAC
1 TCTTTCAATCATGGTCTTAC
50076405 CCATTTCTGG
Statistics
Matches: 130, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
44 3 0.02
45 124 0.95
46 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.38
Consensus pattern (45 bp):
TCTTTCAATCATGGTCTTACTCGATAGAATCATGATGTCATAACA
Found at i:50076426 original size:90 final size:90
Alignment explanation
Indices: 50076236--50076406 Score: 290
Period size: 90 Copynumber: 1.9 Consensus size: 90
50076226 CGTTTGATTG
* * *
50076236 GTGATGTCATAGCATCTTTCAAATATGGTCTTACTCGATAGAATCATGATGTCATAACGTCTTTC
1 GTGATGCCATAACATCTTTCAAATATGGTCTTACTCGATAGAATCATAATGTCATAACGTCTTTC
*
50076301 AGTCATGGTTTTACCCGATAGAATA
66 AGTCATGGTCTTACCCGATAGAATA
50076326 GTGATGCCATAACATCTTTC-AATCATGGTCTTACTCGATAGAATCATAATGTCATAACGTCTTT
1 GTGATGCCATAACATCTTTCAAAT-ATGGTCTTACTCGATAGAATCATAATGTCATAACGTCTTT
50076390 CAGTCATGGTCTTACCC
65 CAGTCATGGTCTTACCC
50076407 ATTTCTGGTA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 3 0.04
90 73 0.96
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (90 bp):
GTGATGCCATAACATCTTTCAAATATGGTCTTACTCGATAGAATCATAATGTCATAACGTCTTTC
AGTCATGGTCTTACCCGATAGAATA
Found at i:50078883 original size:30 final size:30
Alignment explanation
Indices: 50078847--50078906 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
50078837 TTCCCGAGCC
50078847 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
50078877 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
50078907 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:50079633 original size:49 final size:50
Alignment explanation
Indices: 50079553--50079796 Score: 303
Period size: 49 Copynumber: 4.9 Consensus size: 50
50079543 AGCTATTGTG
*
50079553 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
50079603 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
50079653 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
50079703 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * *
50079753 -GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
50079797 CAGCTTCGGC
Statistics
Matches: 164, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 80 0.49
50 47 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:50082826 original size:19 final size:19
Alignment explanation
Indices: 50082795--50082851 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
50082785 TTTTTTAAAA
50082795 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
50082813 TATAAATATTTTGAAATTT
1 TATAAATATTTTGAATTTT
50082832 TA-AAAGTTATTTT-AATTTT
1 TATAAA--TATTTTGAATTTT
50082851 T
1 T
50082852 TTTGTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 10 0.29
19 18 0.53
20 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:50087977 original size:55 final size:54
Alignment explanation
Indices: 50087888--50088143 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
50087878 CATTAGGGTT
**
50087888 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * * * *
50087943 CAAGGAAATCATGTAAGACCATGTCAATACATGGC-ATTGATAAGTTACTATAAGT
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
50087998 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
50088051 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
50088101 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
50088144 GTATCCGTGT
Statistics
Matches: 168, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 40 0.24
54 12 0.07
55 64 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:50088095 original size:108 final size:110
Alignment explanation
Indices: 50087896--50088096 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
50087886 TTCAAGGATA
* * *
50087896 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
50087961 CCATGTCAATACATGGCATTGATAAGTTACTATAAGTCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGTCAAAGGTC
* *
50088006 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
50088068 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
50088097 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGTCAAAGGTC
Found at i:50088356 original size:16 final size:16
Alignment explanation
Indices: 50088335--50088365 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50088325 ATAAATTTGA
50088335 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
50088351 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50088366 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:50091705 original size:46 final size:46
Alignment explanation
Indices: 50091655--50091827 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
50091645 TGGTTGAGCA
*
50091655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *
50091701 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA-T--G
* *
50091746 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
*
50091794 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50091828 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 8, Indels: 20
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.53
47 29 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:50091811 original size:93 final size:93
Alignment explanation
Indices: 50091652--50091822 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
50091642 GGATGGTTGA
*
50091652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
50091717 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
50091745 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
50091809 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
50091823 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50092087 original size:19 final size:20
Alignment explanation
Indices: 50092052--50092089 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50092042 ATAAGGTGGT
50092052 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
50092072 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
50092090 TGGTGATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:50098328 original size:55 final size:53
Alignment explanation
Indices: 50098241--50098495 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 53
50098231 CATTAGGGTT
*
50098241 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
50098296 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
50098351 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
50098404 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * *
50098453 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
50098496 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:50098447 original size:108 final size:110
Alignment explanation
Indices: 50098248--50098448 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
50098238 GTTAAGGATA
*
50098248 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
50098313 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
50098358 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
50098420 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
50098449 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:50098708 original size:16 final size:16
Alignment explanation
Indices: 50098687--50098717 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50098677 ATAAATTTGA
50098687 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
50098703 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50098718 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:50102483 original size:44 final size:44
Alignment explanation
Indices: 50102418--50102503 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
50102408 ATTATATGTA
*
50102418 TCGCATCCATTATAAAATCGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATAAAATCGGACCAACTCAACGAGCTCGGATGC
* *
50102462 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGAT
1 TCGCATCCATAATAAAATCGGACCAACTCAACGAGCTCGGAT
50102504 ACCTCATACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATAAAATCGGACCAACTCAACGAGCTCGGATGC
Found at i:50109748 original size:47 final size:46
Alignment explanation
Indices: 50109603--50109912 Score: 172
Period size: 47 Copynumber: 6.6 Consensus size: 46
50109593 TGAGACAAGG
* * *
50109603 GCTAGTGTAAGACGTGTCTGGGATATGCATCAGC-CGCATCATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCG-ATGATGATA
* ** * * * * *
50109649 ACCCGTGTAAGACCACGTTTGGGACATGGCAAC-G-ACGAAGAGGTGAGT-
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTCGATGA--TGA-TA
* *
50109697 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGATGATGTTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTCGATGATGATA
* * * * * *
50109744 GCCAGTGTAAGACGTGTCTGGGACATCCATCGGCT--AAGTTTCG-T-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCGATG-AT-GATA
* * *
50109788 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACG-TGTACACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCGATG---ATGATA
*
50109836 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATGGA-GATA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTCGAT-GATGATA
* *
50109885 GCTAGCGTAAAACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
50109913 GAAACGACAA
Statistics
Matches: 202, Mismatches: 39, Indels: 44
0.71 0.14 0.15
Matches are distributed among these distances:
44 32 0.16
45 3 0.01
46 20 0.10
47 58 0.29
48 30 0.15
49 46 0.23
50 8 0.04
51 3 0.01
52 1 0.00
53 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCGATGATGATA
Found at i:50109766 original size:94 final size:91
Alignment explanation
Indices: 50109606--50109821 Score: 220
Period size: 94 Copynumber: 2.3 Consensus size: 91
50109596 GACAAGGGCT
* * * *
50109606 AGTGTAAGACGTGTCTGGGATATGCATCAGCCGCATCATGATAACCCGTGTAAGACCACGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAACCAGTGTAAGACCACGTCTGG
*
50109671 GACATGGCAACGACGAAGAGGTGAGTGCC
66 GACAT-CCAACGAC-AA-AGGTGAGTGCC
* * * **
50109700 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCG-ATGATGTTAGCCAGTGTAAGA-CGTGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-C-CGCATCATGATAACCAGTGTAAGACCACGTCT
* * * * ** *
50109763 GGGACATCCATCGGCTAAGTTTCGTGCT
64 GGGACATCCAACGACAAAGGTGAGTGCC
50109791 AGTGTAAGACATGTCTGGGACATGCATCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
50109822 ACGTGTACAC
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
90 1 0.01
91 37 0.36
92 1 0.01
93 5 0.05
94 39 0.38
95 18 0.17
96 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAACCAGTGTAAGACCACGTCTGG
GACATCCAACGACAAAGGTGAGTGCC
Found at i:50109888 original size:49 final size:50
Alignment explanation
Indices: 50109788--50109913 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 50
50109778 TAAGTTTCGT
50109788 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACGTGTACACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTGTACACGAGA
* ** *
50109836 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC-C-TCGATGGA-GATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGT-G-TACACGAGA
* *
50109885 GCTAGCGTAAAACCATGTCTGGGACATGG
1 GCTAGTGTAAGACCATGTCTGGGACATGG
50109914 AAACGACAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
48 13 0.19
49 44 0.66
50 10 0.15
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTGTACACGAGA
Found at i:50116471 original size:47 final size:46
Alignment explanation
Indices: 50116402--50116621 Score: 164
Period size: 47 Copynumber: 4.7 Consensus size: 46
50116392 ATGATAGCCC
*
50116402 GTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGTTGAGTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGTTGAGTGCTA
* * * *
50116450 GTGTAAGACATGTTTGGGACATGCATCAGTC-TCGA--TGATGTTAGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCATAGAGTTGA-G-T-GCTA
* *
50116497 GTGTAAGACGTGTCTGGGACATGCATCGGC-TA-AGTTTG-TTGCTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCATAGAG-TTGAGTGCTA
* * *** **
50116541 GTGTAAGACATGTCTGGGACATGCATCAGCACGTATACACGAAAGCTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCA--TAGAGTTGAGTGCTA
*
50116589 GTGTAAGACCATGTCTGGGACATGGCAGCGGCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
50116622 ACTTAACCCA
Statistics
Matches: 138, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
44 34 0.25
45 3 0.02
46 12 0.09
47 45 0.33
48 23 0.17
49 14 0.10
50 7 0.05
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCATAGAGTTGAGTGCTA
Found at i:50116555 original size:44 final size:44
Alignment explanation
Indices: 50116402--50116567 Score: 165
Period size: 47 Copynumber: 3.6 Consensus size: 44
50116392 ATGATAGCCC
* *
50116402 GTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAG-TTGAGTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TA-AGTTTG-TTGCTA
* * * * *
50116450 GTGTAAGACATGTTTGGGACATGCATCAGTCT-CGATGATGTTAGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCTAAG-T-TTGTT-GCTA
*
50116497 GTGTAAGACGTGTCTGGGACATGCATCGGCTAAGTTTGTTGCTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTAAGTTTGTTGCTA
50116541 GTGTAAGACATGTCTGGGACATGCATC
1 GTGTAAGACATGTCTGGGACATGCATC
50116568 AGCACGTATA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 30 0.31
45 4 0.04
46 11 0.11
47 45 0.46
48 8 0.08
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTAAGTTTGTTGCTA
Found at i:50116559 original size:91 final size:94
Alignment explanation
Indices: 50116305--50116621 Score: 315
Period size: 94 Copynumber: 3.4 Consensus size: 94
50116295 GTTATGTGAG
* * * * *** * *
50116305 GCCAGTATAAGACCA-TTCTGGGACATAGCATCGGCATTGAAACGAGGGCCAGTGTAAGACATGT
1 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGTTGAGTGCTAGTGTAAGACATGT
* *
50116369 CAGGAACATGCATCAGCCACATCATGATA
66 CTGGGACATGCATCAGCCACATCATGATA
*
50116398 GCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGTTGAGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGTTGAGTGCTAGTGTAAGACATGT
* * * * *
50116463 TTGGGACATGCATCAGTCTCGATGATGTTA
66 CTGGGACATGCATCAGCCAC-ATCATGATA
** *
50116493 GCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TA-AGTTTG-TTGCTAGTGTAAGACATG
1 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAG-TTGAGTGCTAGTGTAAGACATG
* *
50116553 TCTGGGACATGCATCAG-CACGTATACACGAAA
65 TCTGGGACATGCATCAGCCAC--AT-CATGATA
* * *
50116585 GCTAGTGTAAGACCATGTCTGGGACATGGCAGCGGCA
1 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCA
50116622 ACTTAACCCA
Statistics
Matches: 185, Mismatches: 31, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
90 2 0.01
91 37 0.20
92 19 0.10
93 34 0.18
94 75 0.41
95 18 0.10
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGTTGAGTGCTAGTGTAAGACATGT
CTGGGACATGCATCAGCCACATCATGATA
Found at i:50117494 original size:55 final size:54
Alignment explanation
Indices: 50117379--50117497 Score: 125
Period size: 55 Copynumber: 2.2 Consensus size: 54
50117369 CTTAAACTTT
* * * * *
50117379 TAAA-TCAGTATTGTCCATGGTTAAGCCACATGGGCGTGTGCCATAGCCGTGTC
1 TAAAGTCAGTATTGTCCACGGGTAAGCCACACGGGAGTGTGCCATAGCCGTGCC
* * *
50117432 TATAAGTCAGTATTG-CTCACGGGTAAGCCACACGGGAGTGTGTCATGGGCGTGCCC
1 TA-AAGTCAGTATTGTC-CACGGGTAAGCCACACGGGAGTGTGCCATAGCCGTG-CC
50117488 TAAAGTCAGT
1 TAAAGTCAGT
50117498 GTCGTACACG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
53 2 0.04
54 3 0.06
55 46 0.85
56 3 0.06
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (54 bp):
TAAAGTCAGTATTGTCCACGGGTAAGCCACACGGGAGTGTGCCATAGCCGTGCC
Found at i:50126696 original size:28 final size:28
Alignment explanation
Indices: 50126635--50126732 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
50126625 TCACAAATTG
** * *
50126635 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
50126664 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
50126692 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
50126720 GCACTAAGTGTGC
1 GCACTAAGTGTGC
50126733 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:50134737 original size:40 final size:39
Alignment explanation
Indices: 50134692--50134899 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
50134682 CGGAATACAA
*
50134692 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50134732 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50134772 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
50134812 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
50134852 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
50134892 CCGGATAT
1 CCGGATAT
50134900 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50134832 original size:80 final size:80
Alignment explanation
Indices: 50134692--50134898 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
50134682 CGGAATACAA
* * *
50134692 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
50134756 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
50134772 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
50134836 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
50134852 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
50134899 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:50142763 original size:40 final size:39
Alignment explanation
Indices: 50142718--50142925 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
50142708 CGGAATACAA
*
50142718 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50142758 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50142798 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
50142838 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
50142878 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
50142918 CCGGATAT
1 CCGGATAT
50142926 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50142858 original size:80 final size:80
Alignment explanation
Indices: 50142718--50142924 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
50142708 CGGAATACAA
* * *
50142718 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
50142782 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
50142798 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
50142862 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
50142878 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
50142925 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:50144826 original size:49 final size:49
Alignment explanation
Indices: 50144766--50144896 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 49
50144756 GCACATTAAA
*
50144766 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTTTCATATAATGAGT
1 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTCTCATATAATG-GT
* ** * *
50144816 -TCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATTTATTGGT
1 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTCTCATATAATGGT
* *
50144864 GTCGATGTCATGTCCCAGATAGGTCTTACACTA
1 GTCGATGCCATGTCCCAAATAGGTCTTACACTA
50144897 GCTTGTATGT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 2 0.03
49 68 0.97
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTCTCATATAATGGT
Found at i:50144919 original size:98 final size:97
Alignment explanation
Indices: 50144766--50144954 Score: 220
Period size: 98 Copynumber: 1.9 Consensus size: 97
50144756 GCACATTAAA
**
50144766 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTTTCATATAATGAGTTCGATGCCATGTCCC
1 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTTTCATATAATGAGGCCGATG-CATGTCCC
* *
50144831 AAACAGGTCTTACACTGGCTCTCATTTATTGGT
65 AAACAGGTCTTAAACTAGCTCTCATTTATTGGT
* * * * *
50144864 GTCGATGTCATGTCCCAGATAGGTCTTACACTAGCTTGT-ATGT-CTCGAGGCCGATGCATGTCC
1 GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTT-TCATATAAT-GAGGCCGATGCATGTCC
* * * *
50144927 TAGATATGTCTTAAACTAGCTCTCATTT
64 CAAACAGGTCTTAAACTAGCTCTCATTT
50144955 CAATGCCGAT
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
97 30 0.39
98 45 0.59
99 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAAATAGGTCTTACACTAACTTTCATATAATGAGGCCGATGCATGTCCCA
AACAGGTCTTAAACTAGCTCTCATTTATTGGT
Found at i:50144938 original size:48 final size:45
Alignment explanation
Indices: 50144866--50145039 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 45
50144856 TTATTGGTGT
* * *
50144866 CGATGTCATGTCCCAGATAGGTCTTACACTAGCTTGTATGTCTCGAGGC
1 CGATG-CATGTCCCAGATATGTCTTACACTAGCTT-CAT-T-TCAAGGC
* * *
50144915 CGATGCATGTCCTAGATATGTCTTAAACTAGCTCTCATTTCAATGC
1 CGATGCATGTCCCAGATATGTCTTACACTAGCT-TCATTTCAAGGC
* * * **
50144961 CGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATAAT-GTGGC
1 CGATGCATGTCCCAGATATGTCTTACACTAGC-TTCAT-TTCAAGGC
* *
50145007 C-AGTACATGTCCCAGACATGTCTTACACTAGCT
1 CGA-TGCATGTCCCAGATATGTCTTACACTAGCT
50145040 CACATACCAC
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 3 0.03
48 27 0.26
49 6 0.06
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (45 bp):
CGATGCATGTCCCAGATATGTCTTACACTAGCTTCATTTCAAGGC
Found at i:50145726 original size:20 final size:18
Alignment explanation
Indices: 50145689--50145739 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
50145679 CTATAACAAC
50145689 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
50145706 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
50145726 TTACAACTTTACAA
1 TCACAA-TTTACAA
50145740 AATAGCCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:50149152 original size:17 final size:18
Alignment explanation
Indices: 50149132--50149165 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50149122 AATATGCATG
50149132 AAAAA-CTGATTTTTATC
1 AAAAATCTGATTTTTATC
*
50149149 AAAAATGTGATTTTTAT
1 AAAAATCTGATTTTTAT
50149166 ACAATTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (18 bp):
AAAAATCTGATTTTTATC
Found at i:50158423 original size:22 final size:23
Alignment explanation
Indices: 50158398--50158445 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
50158388 GTTTTATAGT
50158398 TTTTAA-TTATTATTTGATAAA-A
1 TTTTAAGTTATTATTT-ATAAATA
*
50158420 TTTTAAGTTCTTATTTATAAATA
1 TTTTAAGTTATTATTTATAAATA
50158443 TTT
1 TTT
50158446 AAAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTAAGTTATTATTTATAAATA
Found at i:50158423 original size:23 final size:24
Alignment explanation
Indices: 50158397--50158445 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
50158387 TGTTTTATAG
50158397 TTTTTAA-TTATTATTTGATAAA-A
1 TTTTTAAGTTATTATTT-ATAAATA
*
50158420 -TTTTAAGTTCTTATTTATAAATA
1 TTTTTAAGTTATTATTTATAAATA
50158443 TTT
1 TTT
50158446 AAAAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
22 11 0.50
23 9 0.41
24 2 0.09
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTTTAAGTTATTATTTATAAATA
Found at i:50160398 original size:58 final size:58
Alignment explanation
Indices: 50160308--50160425 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
50160298 ACAAGCAATT
50160308 GTCCAACAAATAGTTAACTTATAGTCAAATCGCTAAAAACTAACATTCTAAAATTGAA
1 GTCCAACAAATAGTTAACTTATAGTCAAATCGCTAAAAACTAACATTCTAAAATTGAA
50160366 GTCCAACAAATAGTTAACTTATAGTCAAATCGCTAAAAACTAACATTCTAAAATTGAA
1 GTCCAACAAATAGTTAACTTATAGTCAAATCGCTAAAAACTAACATTCTAAAATTGAA
50160424 GT
1 GT
50160426 TACGTCAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (58 bp):
GTCCAACAAATAGTTAACTTATAGTCAAATCGCTAAAAACTAACATTCTAAAATTGAA
Found at i:50162792 original size:2 final size:2
Alignment explanation
Indices: 50162785--50162823 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
50162775 TTTAATATTA
50162785 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50162824 AAGTTAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:50164209 original size:11 final size:11
Alignment explanation
Indices: 50164178--50164237 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
50164168 TTTTTTACTG
*
50164178 TTTTGTCATTAA
1 TTTTGTTATT-A
*
50164190 TTTTTTTATTA
1 TTTTGTTATTA
*
50164201 TTTTGTTATCA
1 TTTTGTTATTA
*
50164212 TTTCGTTATTA
1 TTTTGTTATTA
* *
50164223 TATTGTTACTA
1 TTTTGTTATTA
50164234 TTTT
1 TTTT
50164238 ATTGTTATTG
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
11 30 0.79
12 8 0.21
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:50166155 original size:23 final size:21
Alignment explanation
Indices: 50166114--50166157 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
50166104 ATATAAGTAT
50166114 AAATAATTATATAAACAAATA
1 AAATAATTATATAAACAAATA
*
50166135 AAATAACTTAATATAAGCAAATA
1 AAATAA-TT-ATATAAACAAATA
50166158 TTTATATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 12 0.60
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATAATTATATAAACAAATA
Found at i:50166166 original size:16 final size:16
Alignment explanation
Indices: 50166145--50166178 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50166135 AAATAACTTA
*
50166145 ATATAAGCAAATATTT
1 ATATAACCAAATATTT
50166161 ATATAACCAAATATTT
1 ATATAACCAAATATTT
50166177 AT
1 AT
50166179 TTTATGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.38
Consensus pattern (16 bp):
ATATAACCAAATATTT
Found at i:50171175 original size:19 final size:19
Alignment explanation
Indices: 50171136--50171177 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50171126 CATTCGGCTA
* *
50171136 TGTGGAACGCCCCAGACCG
1 TGTGGAACACCCCAAACCG
*
50171155 TGTGGAACACCCCAAATCG
1 TGTGGAACACCCCAAACCG
50171174 TGTG
1 TGTG
50171178 ACTTTCGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (19 bp):
TGTGGAACACCCCAAACCG
Found at i:50175013 original size:43 final size:43
Alignment explanation
Indices: 50174965--50175058 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
50174955 GATTAACAAG
50174965 ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
* * *
50175008 ATGTGATTATGTGTAAGACCATTTCTGGGACATTGGCATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
*
50175051 ATTTGATT
1 ATGTGATT
50175059 TCATATAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
Found at i:50175068 original size:43 final size:43
Alignment explanation
Indices: 50174976--50175119 Score: 157
Period size: 43 Copynumber: 3.3 Consensus size: 43
50174966 TGTGATTATG
* * * *
50174976 TGTAAGACCATGTCTGAGACATTGGCATCATTATGTGATTAT-G
1 TGTAAGACCATATCTGGGACATTGGCATCGTTATGTGATT-TCA
* *
50175019 TGTAAGACCATTTCTGGGACATTGGCATCGTTATTTGATTTCA
1 TGTAAGACCATATCTGGGACATTGGCATCGTTATGTGATTTCA
* * * **
50175062 TATAAGACCATAGCTGGG-CTATTGGCATCGATATGTGATAACA
1 TGTAAGACCATATCTGGGAC-ATTGGCATCGTTATGTGATTTCA
50175105 TGTAAGACCATATCT
1 TGTAAGACCATATCT
50175120 AAGATATGGC
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 2 0.02
43 83 0.98
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACATTGGCATCGTTATGTGATTTCA
Found at i:50177497 original size:58 final size:58
Alignment explanation
Indices: 50177407--50177523 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
50177397 GATACTCGGC
50177407 AACTCTCATACACATGGTAGGATGCCAATGCCATATCCTGGATATGGTCTTACATGGG
1 AACTCTCATACACATGGTAGGATGCCAATGCCATATCCTGGATATGGTCTTACATGGG
50177465 AACTCTCATACACATGGTAGGATGCCAATGCCATATCCTGGATATGGTCTTACATGGG
1 AACTCTCATACACATGGTAGGATGCCAATGCCATATCCTGGATATGGTCTTACATGGG
50177523 A
1 A
50177524 TCACATATCG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (58 bp):
AACTCTCATACACATGGTAGGATGCCAATGCCATATCCTGGATATGGTCTTACATGGG
Found at i:50177538 original size:48 final size:48
Alignment explanation
Indices: 50177485--50177665 Score: 187
Period size: 48 Copynumber: 3.9 Consensus size: 48
50177475 CACATGGTAG
* *
50177485 GATGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
* *
50177533 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
* * * ** *
50177581 GATGCC---G--ATAGCCTAG-CTATAGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATATCCTAGAC-ATGGTCTTACATGGGATCACATATC
* *
50177624 GATGCCAAAGCCATGTTCC-AGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCAT-ATCCTAGACATGGTCTTACATGGGATCA
50177666 TACATAACCC
Statistics
Matches: 106, Mismatches: 19, Indels: 16
0.75 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 32 0.30
45 1 0.01
46 1 0.01
48 68 0.64
49 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:50195306 original size:40 final size:40
Alignment explanation
Indices: 50195179--50195308 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50195169 ATGCTGGAAA
* * *
50195179 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
50195219 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50195259 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50195299 TTATATCCGG
1 TTATATCCGG
50195309 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50203330 original size:40 final size:40
Alignment explanation
Indices: 50203203--50203332 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50203193 ATGCTGGAAA
* * *
50203203 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
50203243 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50203283 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50203323 TTATATCCGG
1 TTATATCCGG
50203333 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50208970 original size:52 final size:51
Alignment explanation
Indices: 50208853--50209030 Score: 238
Period size: 52 Copynumber: 3.5 Consensus size: 51
50208843 ACTAGTGACT
* *
50208853 CAAGTGTGGTACTATGTGAATGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
50208902 CAAGTTTGGTACTATGTGAAGGCCACTTTGTGAAGAAATATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
50208954 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
*
50209005 CAAG-GATGGTACTATGTGCAGGCCAC
1 CAAGTG-TGGTACTATGTGAAGGCCAC
50209031 CGGGTATCCG
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
49 32 0.28
50 3 0.03
51 39 0.34
52 41 0.36
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:50211811 original size:40 final size:40
Alignment explanation
Indices: 50211766--50211932 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50211756 CGGAATATAA
50211766 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50211806 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50211846 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50211886 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50211925 CCGGATAT
1 CCGGATAT
50211933 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50211916 original size:80 final size:79
Alignment explanation
Indices: 50211766--50211932 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50211756 CGGAATATAA
* *
50211766 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50211831 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50211846 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50211908 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50211925 CCGGATAT
1 CCGGATAT
50211933 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50219009 original size:40 final size:40
Alignment explanation
Indices: 50218964--50219130 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50218954 CGGAATATAA
50218964 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50219004 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
50219044 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50219084 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50219123 CCGGATAT
1 CCGGATAT
50219131 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50219114 original size:80 final size:79
Alignment explanation
Indices: 50218964--50219130 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50218954 CGGAATATAA
* *
50218964 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
50219029 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
50219044 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
50219106 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50219123 CCGGATAT
1 CCGGATAT
50219131 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50221226 original size:28 final size:27
Alignment explanation
Indices: 50221163--50221232 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
50221153 ATAGTGAGTC
50221163 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
50221190 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
50221218 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50221233 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:50229034 original size:28 final size:27
Alignment explanation
Indices: 50228971--50229040 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
50228961 ATAGTGAGTC
50228971 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
50228998 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
50229026 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50229041 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:50237644 original size:10 final size:10
Alignment explanation
Indices: 50237629--50237653 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50237619 AATACATTCT
50237629 CAATTTCAAC
1 CAATTTCAAC
50237639 CAATTTCAAC
1 CAATTTCAAC
50237649 CAATT
1 CAATT
50237654 GCTACCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (10 bp):
CAATTTCAAC
Found at i:50238434 original size:26 final size:26
Alignment explanation
Indices: 50238405--50238483 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
50238395 AACACACCAA
* * *
50238405 TATCGCAGCAAGGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTACCAGTAACAG
*
50238431 TATCGCAGCAAAACTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
50238457 TATCGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
50238483 T
1 T
50238484 TTGTGGCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAACAG
Found at i:50238500 original size:25 final size:26
Alignment explanation
Indices: 50238405--50238510 Score: 97
Period size: 26 Copynumber: 4.1 Consensus size: 26
50238395 AACACACCAA
* ** *
50238405 TATCGCAGCAAGGCTGCCAGTAATAG
1 TATCGCAGCAAAGCCACCAGTAACAG
* *
50238431 TATCGCAGCAAAACTACCAGTAACAG
1 TATCGCAGCAAAGCCACCAGTAACAG
*
50238457 TATCGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCCACCAGTAACAG
* ** * *
50238483 T-TTGTGGCAAAGCCACCAGAAATAG
1 TATCGCAGCAAAGCCACCAGTAACAG
50238508 TAT
1 TAT
50238511 ATATGGCGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 19 0.28
26 49 0.72
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCCACCAGTAACAG
Found at i:50238686 original size:27 final size:27
Alignment explanation
Indices: 50238636--50238687 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
50238626 ATCATAGCCC
*
50238636 AAATCAGTCATTTACCCTCGAGGGGTA
1 AAATCAGTCATTTACCCTAGAGGGGTA
*
50238663 AAAT-AGTCATTTTACCCTATAGGGG
1 AAATCAGTCA-TTTACCCTAGAGGGG
50238688 AATTTTGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTAGAGGGGTA
Found at i:50250107 original size:49 final size:49
Alignment explanation
Indices: 50250051--50250234 Score: 224
Period size: 49 Copynumber: 3.7 Consensus size: 49
50250041 CTAGTACGCA
*
50250051 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTGCACG
* * * * * * *
50250100 TAGTAGCCTGCACTTACTACTACACACGTGATCAAAGCTATCGGGGGTACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTGCACG
* * *
50250151 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACG
1 --TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTGCACG
*
50250202 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
50250235 TCACAATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 60 0.53
50 3 0.03
51 18 0.16
52 3 0.03
53 29 0.26
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTGCACG
Found at i:50250179 original size:102 final size:102
Alignment explanation
Indices: 50250044--50250232 Score: 333
Period size: 102 Copynumber: 1.9 Consensus size: 102
50250034 AAGCTATCTA
* *
50250044 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTGCACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
50250109 GCACTTACTACTACACACGTGATCAAAGCTATCGGGG
66 GCACTTACTACTACACACGTGATCAAAGCTATCGGGG
* *
50250146 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
*
50250211 GCACTTAGTACTACACACGTGA
66 GCACTTACTACTACACACGTGA
50250233 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 82 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (102 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
GCACTTACTACTACACACGTGATCAAAGCTATCGGGG
Found at i:50250510 original size:27 final size:27
Alignment explanation
Indices: 50250480--50250533 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
50250470 TCATACAACC
* *
50250480 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
50250507 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
50250534 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:50253019 original size:28 final size:29
Alignment explanation
Indices: 50252983--50253047 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
50252973 AAAGTGATTT
* * *
50252983 TTGACAAAAATGTCAATT-AGGGGTTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
*
50253011 TTGAGAAAAGTGTAAATTGAGGGATTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
50253040 TTGAGAAA
1 TTGAGAAA
50253048 TAAATGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 15 0.47
29 17 0.53
ACGTcount: A:0.45, C:0.03, G:0.25, T:0.28
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGGGATTAAA
Found at i:50253669 original size:47 final size:47
Alignment explanation
Indices: 50253592--50253721 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 47
50253582 GTGCGAATAA
* * * * * *
50253592 TACCTCGATTTGGCGACTAGCTATGATATAGGTATTTTGAGAGGAGCT
1 TACCTCGATTTGGCTACTAGCCATGGTATAGGTACTCTGAGAGAAG-T
* *
50253640 T-CCTCGATTTGGCTA-TGGGCCATGGTATAGGTACTCTGAGATAAGT
1 TACCTCGATTTGGCTACT-AGCCATGGTATAGGTACTCTGAGAGAAGT
* *
50253686 TACCTTGATTTGGCTACTAGCCATGGTATATGTACT
1 TACCTCGATTTGGCTACTAGCCATGGTATAGGTACT
50253722 TATCGATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
46 3 0.04
47 63 0.93
48 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (47 bp):
TACCTCGATTTGGCTACTAGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:50256496 original size:45 final size:44
Alignment explanation
Indices: 50256328--50256492 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 44
50256318 CGCATCTGTT
* * * * *
50256328 ATGAACTCAGACCAACTCAATGAGCTCGGATGCTCGCATCCATA
1 ATGAACTCGGACCAACTCAACGAGCTCGGATGCTCACATACATC
*
50256372 ATGAACTCGGACCAACTCAATGAGCTCGGATGCTTCACATACA-C
1 ATGAACTCGGACCAACTCAACGAGCTCGGATGC-TCACATACATC
* * * * * *
50256416 TATGAACTTGGACCAACTCAACAAGTTCAGATTTCTCACATATATC
1 -ATGAACTCGGACCAACTCAACGAGCTCGGA-TGCTCACATACATC
*
50256462 ACGAACTCGGACCAACTCAACGAGCTCGGAT
1 ATGAACTCGGACCAACTCAACGAGCTCGGAT
50256493 TTCTTAATTC
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
44 33 0.33
45 65 0.64
46 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (44 bp):
ATGAACTCGGACCAACTCAACGAGCTCGGATGCTCACATACATC
Found at i:50256714 original size:14 final size:16
Alignment explanation
Indices: 50256682--50256720 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
50256672 ATTTACATAA
*
50256682 CATATATCACATATTT
1 CATATATCACATATGT
50256698 CATATATCA-AT-TGT
1 CATATATCACATATGT
50256712 CATATATCA
1 CATATATCA
50256721 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 2 0.09
16 9 0.41
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:50259810 original size:40 final size:39
Alignment explanation
Indices: 50259720--50259944 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 39
50259710 TCGAATGATG
* *
50259720 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
50259760 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
50259799 TCCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
50259839 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* **
50259879 TCCGGGTTAAGTCCCGAAGGCATTTACGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
50259919 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50259945 AACAAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 36 0.22
40 121 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:50268060 original size:39 final size:40
Alignment explanation
Indices: 50267940--50268161 Score: 278
Period size: 39 Copynumber: 5.7 Consensus size: 40
50267930 TCGAATGATG
* * *
50267940 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
50267980 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
50268019 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50268058 TCCGGGTTAAGT-CCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
50268097 TCCGGGTTAAGTCCCG-AGGCATTTACGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50268137 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50268162 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
38 24 0.15
39 94 0.58
40 37 0.23
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.