Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 182 of 444
Found at i:50940657 original size:56 final size:56
Alignment explanation
Indices: 50940510--50940671 Score: 240
Period size: 54 Copynumber: 2.9 Consensus size: 56
50940500 CCAAACGAAC
*
50940510 GGCACTTAGTGTGCGAAGTATTGAGGATGACACTTAGTGTGC-AAGACATCCGAAAT
1 GGCACTTAGTGTGTGAAGTATTGAGGATGACACTTAGTGTGCGAA-ACATCCGAAAT
* * *
50940566 GACAC--AGTGTATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAAT
1 GGCACTTAGTGTGTGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCGAAAT
* *
50940620 GGCACTTAGTGTGTGAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCG
1 GGCACTTAGTGTGTGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCG
50940672 GTATAGCACT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
54 47 0.50
55 2 0.02
56 45 0.48
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (56 bp):
GGCACTTAGTGTGTGAAGTATTGAGGATGACACTTAGTGTGCGAAACATCCGAAAT
Found at i:50940699 original size:56 final size:56
Alignment explanation
Indices: 50940532--50940699 Score: 157
Period size: 56 Copynumber: 3.0 Consensus size: 56
50940522 GCGAAGTATT
* * * * *
50940532 GAGGATGACACTTAGTGTGC-AAGACATCCGAAAT-GACAC--AGTGTATGAAGTATT
1 GAGGATGACACTTAGTGTGCGAA-ACATCCGAAATAG-CACTTAGCGTGTCAAGCATC
* * * * *
50940586 GATGATGACACTTAGTGTGCGAAACATCCGAAATGGCACTTAGTGTGTGAAGTATC
1 GAGGATGACACTTAGTGTGCGAAACATCCGAAATAGCACTTAGCGTGTCAAGCATC
* **
50940642 GAGGATGGCACTTAGTGTGCGAAACATCCGGTATAGCACTTAGCGTG-CAAGACATC
1 GAGGATGACACTTAGTGTGCGAAACATCCGAAATAGCACTTAGCGTGTCAAG-CATC
50940698 GA
1 GA
50940700 TTGTGCAGCG
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
54 33 0.34
55 6 0.06
56 59 0.60
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (56 bp):
GAGGATGACACTTAGTGTGCGAAACATCCGAAATAGCACTTAGCGTGTCAAGCATC
Found at i:50943384 original size:52 final size:48
Alignment explanation
Indices: 50943322--50943514 Score: 185
Period size: 47 Copynumber: 4.0 Consensus size: 48
50943312 GAAATCTGAT
* *
50943322 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* * *
50943374 TTCCGTATAAGAGCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * **
50943421 TACTGTATAAGACCATATATGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * * * *
50943467 ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCGATATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGA-GTGTGATATGTG
50943515 ACTATGTGCA
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
46 24 0.20
47 53 0.45
48 11 0.09
50 1 0.01
51 1 0.01
52 28 0.24
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:50946406 original size:56 final size:56
Alignment explanation
Indices: 50946254--50946408 Score: 152
Period size: 56 Copynumber: 2.8 Consensus size: 56
50946244 GCATTACTGT
* * * * * * * *
50946254 AAATGTGGAAGTTTGTTAAGACGATCTAAAATGTAGAAGCCCGCCAAGATGATCTT
1 AAATGTGGAAGTCTGCTAGGACAATCTTAAATGTGGAAGTCCGCCAAGATGATCTA
* * * * * *
50946310 AAATGTGGAAATC--CATCAGGACAATCTTAAATGCGAAAGTCTGTCAAGTTGATCTA
1 AAATGTGGAAGTCTGC-T-AGGACAATCTTAAATGTGGAAGTCCGCCAAGATGATCTA
50946366 AAATGTGGAAGTCTGCTAGGACAATCTTAAATGTGGAAGTCCG
1 AAATGTGGAAGTCTGCTAGGACAATCTTAAATGTGGAAGTCCG
50946409 TGGGGACTAT
Statistics
Matches: 77, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
55 1 0.01
56 74 0.96
57 1 0.01
58 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (56 bp):
AAATGTGGAAGTCTGCTAGGACAATCTTAAATGTGGAAGTCCGCCAAGATGATCTA
Found at i:50948797 original size:13 final size:15
Alignment explanation
Indices: 50948777--50948816 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
50948767 TTTAATAATT
50948777 TAATAAATTATTA-A
1 TAATAAATTATTATA
*
50948791 T-ATAAATTATTATT
1 TAATAAATTATTATA
50948805 TAATAAATTATT
1 TAATAAATTATT
50948817 TAATGTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 11 0.48
14 2 0.09
15 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATAAATTATTATA
Found at i:50948861 original size:22 final size:21
Alignment explanation
Indices: 50948836--50948880 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
50948826 GATTTTATTT
*
50948836 TAATAATAAATTTTAAAAATAA
1 TAATAATAAAGTTT-AAAATAA
**
50948858 TAATTTTAAAGTTTAAAATAA
1 TAATAATAAAGTTTAAAATAA
50948879 TA
1 TA
50948881 TTCATCATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATAATAAAGTTTAAAATAA
Found at i:50948864 original size:15 final size:16
Alignment explanation
Indices: 50948837--50948867 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50948827 ATTTTATTTT
50948837 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
50948853 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
50948868 GTTTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:50949696 original size:17 final size:19
Alignment explanation
Indices: 50949670--50949715 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
50949660 CCAAACACTA
*
50949670 TAAAATATCAA-CT-TTTT
1 TAAAAAATCAATCTATTTT
50949687 TAAAAAATCAATCTATTTT
1 TAAAAAATCAATCTATTTT
*
50949706 TCAAAAATCA
1 TAAAAAATCA
50949716 TTTTCATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.40
18 2 0.08
19 13 0.52
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAAAATCAATCTATTTT
Found at i:50950722 original size:20 final size:20
Alignment explanation
Indices: 50950699--50950760 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
50950689 AAAAAAAATT
50950699 AAATTTAAATTAAAATATTA
1 AAATTTAAATTAAAATATTA
* * ** *
50950719 AAATTCAAAATAAAATCCTG
1 AAATTTAAATTAAAATATTA
*
50950739 AAATTTAAAATAAAAATATTA
1 AAATTT-AAATTAAAATATTA
50950760 A
1 A
50950761 TGTGACATAA
Statistics
Matches: 30, Mismatches: 11, Indels: 1
0.71 0.26 0.02
Matches are distributed among these distances:
20 20 0.67
21 10 0.33
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (20 bp):
AAATTTAAATTAAAATATTA
Found at i:50953342 original size:12 final size:12
Alignment explanation
Indices: 50953325--50953351 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50953315 CAGTTCAAAA
50953325 TTAAGATTTGAT
1 TTAAGATTTGAT
50953337 TTAAGATTTGAT
1 TTAAGATTTGAT
50953349 TTA
1 TTA
50953352 TTTATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
TTAAGATTTGAT
Found at i:50958816 original size:25 final size:25
Alignment explanation
Indices: 50958788--50958835 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50958778 TTATACCATG
* * *
50958788 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50958813 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50958836 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50958904 original size:20 final size:20
Alignment explanation
Indices: 50958879--50958937 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
50958869 TAAATATGGT
*
50958879 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
50958899 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
50958919 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50958938 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:50959015 original size:24 final size:24
Alignment explanation
Indices: 50958988--50959106 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
50958978 GAGGAAGTGA
50958988 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50959012 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
50959036 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50959059 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50959083 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50959107 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 22 0.25
24 54 0.62
25 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50959064 original size:47 final size:47
Alignment explanation
Indices: 50958989--50959081 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
50958979 AGGAAGTGAA
50958989 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
** *
50959036 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
50959082 TAAAAGAGGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
Found at i:50959333 original size:31 final size:31
Alignment explanation
Indices: 50959298--50959392 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50959288 CGTTTACAGT
50959298 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50959329 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50959360 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50959391 AA
1 AA
50959393 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50966286 original size:25 final size:25
Alignment explanation
Indices: 50966256--50966303 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50966246 CTATACCATG
* * *
50966256 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50966281 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50966304 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50966372 original size:20 final size:20
Alignment explanation
Indices: 50966347--50966405 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
50966337 TAAATATGGT
*
50966347 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
50966367 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
50966387 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50966406 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:50966483 original size:24 final size:24
Alignment explanation
Indices: 50966456--50966574 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
50966446 GAGGAAGTGA
50966456 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50966480 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
50966504 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50966527 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50966551 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50966575 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 22 0.25
24 54 0.62
25 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50966532 original size:47 final size:47
Alignment explanation
Indices: 50966457--50966549 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
50966447 AGGAAGTGAA
50966457 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
** *
50966504 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
50966550 TAAAAGAGGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
Found at i:50966801 original size:31 final size:31
Alignment explanation
Indices: 50966766--50966860 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50966756 CGTTTACAGT
50966766 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50966797 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50966828 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50966859 AA
1 AA
50966861 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50968090 original size:46 final size:45
Alignment explanation
Indices: 50967997--50968082 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
50967987 TACATCTCTC
* * **
50967997 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
50968043 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
50968083 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 8 0.23
46 27 0.77
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:50974570 original size:7 final size:7
Alignment explanation
Indices: 50974560--50974595 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
50974550 TTTTATATAC
50974560 TAATAAA
1 TAATAAA
50974567 TAATAAA
1 TAATAAA
50974574 TAATATAA
1 TAATA-AA
*
50974582 TAATATA
1 TAATAAA
50974589 TAATAAA
1 TAATAAA
50974596 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
TAATAAA
Found at i:50974579 original size:22 final size:22
Alignment explanation
Indices: 50974554--50974595 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50974544 TTAATTTTTT
*
50974554 ATATACTAATAAATAATAAATA
1 ATATAATAATAAATAATAAATA
*
50974576 ATATAATAATATATAATAAA
1 ATATAATAATAAATAATAAA
50974596 AGGAAGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
ATATAATAATAAATAATAAATA
Found at i:50974637 original size:17 final size:17
Alignment explanation
Indices: 50974581--50974703 Score: 77
Period size: 17 Copynumber: 7.6 Consensus size: 17
50974571 AAATAATATA
*
50974581 ATAATATATAATAAAAGG
1 ATAATATATAATAAAA-T
50974599 A-AGATA-AT-ATAAGAA-
1 ATA-ATATATAATAA-AAT
50974614 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
* *
50974631 ATGATATGTAATAAAAT
1 ATAATATATAATAAAAT
* *
50974648 ATAAAATATAATGAAAT
1 ATAATATATAATAAAAT
*
50974665 AT-A-A-ATAACAAAAT
1 ATAATATATAATAAAAT
*
50974679 A-ACATATA-ATTAAAA-
1 ATA-ATATATAATAAAAT
50974694 ATAATATATA
1 ATAATATATA
50974704 CTGTTTTTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
14 9 0.11
15 12 0.14
16 18 0.22
17 40 0.48
18 4 0.05
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:50974677 original size:24 final size:24
Alignment explanation
Indices: 50974604--50974679 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
50974594 AAAGGAAGAT
*
50974604 AATATAA-GAAATAATATATAATAA
1 AATATAATGAAAT-ATAAATAATAA
*
50974628 AATATGATATGTAATA-AAAT-ATAA
1 AATAT-A-ATGAAATATAAATAATAA
*
50974652 AATATAATGAAATATAAATAACAA
1 AATATAATGAAATATAAATAATAA
50974676 AATA
1 AATA
50974680 ACATATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 7 0.16
23 5 0.12
24 21 0.49
25 4 0.09
26 2 0.05
27 4 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (24 bp):
AATATAATGAAATATAAATAATAA
Found at i:50974697 original size:29 final size:28
Alignment explanation
Indices: 50974640--50974697 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
50974630 TATGATATGT
* *
50974640 AATAAAATATAAAATATAATGAAATATA
1 AATAAAAAATAAAATATAATGAAAAATA
* *
50974668 AATAACAAAATAACATATAATTAAAAATA
1 AATAA-AAAATAAAATATAATGAAAAATA
50974697 A
1 A
50974698 TATATACTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (28 bp):
AATAAAAAATAAAATATAATGAAAAATA
Found at i:50976301 original size:44 final size:44
Alignment explanation
Indices: 50976236--50977032 Score: 944
Period size: 44 Copynumber: 18.3 Consensus size: 44
50976226 TCAAGAATAT
* * * * *
50976236 CAAATCTGCTATCTTTGATCTGCTCTCTGACAATACGGAGGTGT
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * * *
50976280 CAAACCTACTATCTTCTATCTGCTCTCTGACAATACAAAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* *
50976324 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATGCAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * * * ** *
50976368 TAAATCTGTTTTCTTCGATCTGTTCTCCGGCAATATGGGGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
*
50976412 CAAATCTG----C-T--ATCTGCTCTCTGACAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * *
50976449 CAAATCTACTATCTTCGATTTGCTCTCTGGTAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * **
50976493 CAAATCTGTTATCTTCGATCTGCTCTCTGGCAATATAGAGACAC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * *
50976537 CAAATTTGTTATCTTTGATCTGCTCTCTGGCAATACAGGGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * *
50976581 CAAATCTGCTATCTTCGATCTGCTCTTTGGCTATATAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * * *
50976625 CAAATCTGTTATCTTCAATCTGCTCTCCGGCAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
50976669 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
*
50976713 CAAATCTGCTATCTTCGATATGCTCTCTGGCAATACAGAGACT-C
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGA-TGC
* * **
50976757 CAAATCTGTTATCTTCGATCTGCTCTCTGGTAATATGGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
** *
50976801 CAAATCCACTATCTTTGATCTGCTCTCTGGCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * **
50976845 CAAATCTGTTATCTTCGATCTGCTCTCCGGCAATATGGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* * *
50976889 CAAATCTGCTATCTTTGATCTACTCTCTGGCAATACGGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* *
50976933 CAAATCTGCTATCTTCGATCTGCACTCTGGCAATATAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
* ** * * *
50976977 CAAATCTACTATCTTCGATCTATTTTCTGACAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
*
50977021 CAAATCGGCTAT
1 CAAATCTGCTAT
50977033 TGGTGATCAA
Statistics
Matches: 637, Mismatches: 107, Indels: 18
0.84 0.14 0.02
Matches are distributed among these distances:
37 28 0.04
39 1 0.00
40 1 0.00
41 1 0.00
42 1 0.00
43 1 0.00
44 603 0.95
45 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATCTGCTCTCTGGCAATACAGAGATGC
Found at i:50989139 original size:7 final size:7
Alignment explanation
Indices: 50989129--50989269 Score: 53
Period size: 7 Copynumber: 19.7 Consensus size: 7
50989119 TTTTATATAC
50989129 TAATAAA
1 TAATAAA
50989136 TAATAAA
1 TAATAAA
*
50989143 TAATGTAA
1 TAAT-AAA
*
50989151 TAATATA
1 TAATAAA
50989158 TAATAAA
1 TAATAAA
**
50989165 -AGGAAGA
1 TAATAA-A
50989172 TAAT--A
1 TAATAAA
*
50989177 TAAGAAA
1 TAATAAA
*
50989184 TAATATA
1 TAATAAA
50989191 TAATAAAA
1 TAAT-AAA
**
50989199 TATGATATG
1 TA--ATAAA
50989208 TAATAAAA
1 TAAT-AAA
*
50989216 TATAAAATA
1 TA-ATAA-A
50989225 TAATGAAA
1 TAAT-AAA
50989233 T-ATAAA
1 TAATAAA
50989239 TAATAAA
1 TAATAAA
50989246 -AATAACA
1 TAATAA-A
*
50989253 T-ATAAT
1 TAATAAA
50989259 TAA-AAA
1 TAATAAA
50989265 TAATA
1 TAATA
50989270 TATACTGTTT
Statistics
Matches: 97, Mismatches: 20, Indels: 34
0.64 0.13 0.23
Matches are distributed among these distances:
5 4 0.04
6 18 0.19
7 45 0.46
8 19 0.20
9 9 0.09
10 2 0.02
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.30
Consensus pattern (7 bp):
TAATAAA
Found at i:50989206 original size:17 final size:17
Alignment explanation
Indices: 50989150--50989273 Score: 95
Period size: 17 Copynumber: 7.6 Consensus size: 17
50989140 AAATAATGTA
*
50989150 ATAATATATAATAAAAGG
1 ATAATATATAATAAAA-T
50989168 A-AGATA-AT-ATAAGAA-
1 ATA-ATATATAATAA-AAT
50989183 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
* *
50989200 ATGATATGTAATAAAAT
1 ATAATATATAATAAAAT
* *
50989217 ATAAAATATAATGAAAT
1 ATAATATATAATAAAAT
50989234 AT-A-A-ATAATAAAA-
1 ATAATATATAATAAAAT
*
50989247 ATAACATATAATTAAAA-
1 ATAATATATAA-TAAAAT
50989264 ATAATATATA
1 ATAATATATA
50989274 CTGTTTTTAT
Statistics
Matches: 88, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
13 2 0.02
14 9 0.10
15 6 0.07
16 14 0.16
17 53 0.60
18 4 0.05
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.30
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:50989244 original size:24 final size:24
Alignment explanation
Indices: 50989173--50989250 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
50989163 AAAGGAAGAT
*
50989173 AATATAA-GAAATAATATATAATAA
1 AATATAATGAAAT-ATAAATAATAA
*
50989197 AATATGATATGTAATA-AAAT-ATAA
1 AATAT-A-ATGAAATATAAATAATAA
50989221 AATATAATGAAATATAAATAATAA
1 AATATAATGAAATATAAATAATAA
50989245 AA-ATAA
1 AATATAA
50989251 CATATAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
22 7 0.15
23 9 0.20
24 20 0.43
25 4 0.09
26 2 0.04
27 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.29
Consensus pattern (24 bp):
AATATAATGAAATATAAATAATAA
Found at i:50991317 original size:2 final size:2
Alignment explanation
Indices: 50991310--50991337 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
50991300 ATACCAAACA
50991310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50991338 TAAATTTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50993383 original size:42 final size:42
Alignment explanation
Indices: 50993324--50993407 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
50993314 GAATAAGTGA
*
50993324 GTTAATTTTGATATTAATTAGATTGGCAAAAGTGTAATTCGG
1 GTTAATTTTGATATTAATTAGATTGGCAAAAGTGGAATTCGG
50993366 GTTAATTTTGATATTAATTAGATTGGCAAAAGTGGAATTCGG
1 GTTAATTTTGATATTAATTAGATTGGCAAAAGTGGAATTCGG
50993408 ATTTGGATTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (42 bp):
GTTAATTTTGATATTAATTAGATTGGCAAAAGTGGAATTCGG
Found at i:50993890 original size:41 final size:41
Alignment explanation
Indices: 50993717--50993894 Score: 225
Period size: 41 Copynumber: 4.3 Consensus size: 41
50993707 ATTCGGGGTG
* *
50993717 TATTGCCTAGCAAGCTTTGTGCCGGTGTATTAAATCAGGCT
1 TATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCT
** *
50993758 TATCACCTAGCAGACTTTGTGCCGGTGTATTATATCAGGCT
1 TATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCT
* * *
50993799 TATTACCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGGT
1 TATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGCT
*
50993842 TATTGCCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGCT
1 TATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCT
50993883 T-TATGCCTAGCA
1 TAT-TGCCTAGCA
50993895 AATTTTATGT
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
40 2 0.02
41 79 0.66
42 3 0.03
43 36 0.30
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCT
Found at i:50993892 original size:84 final size:82
Alignment explanation
Indices: 50993717--50993895 Score: 227
Period size: 84 Copynumber: 2.2 Consensus size: 82
50993707 ATTCGGGGTG
* *
50993717 TATTGCCTAGCAAGCTTTGTGCCGGTGTATTAAATCAGGCTTATCACCTAGCAGACTTTGTGCCG
1 TATTGCCTAGCAAGCTTTATGCCGGTGTATTAAATCAGGCTTATCACCTAGCAGACTCTGTGCCG
50993782 GTGTATTATATCAGGCT
66 GTGTATTATATCAGGCT
* * * * ** *
50993799 TATTACCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGGTTATTGCCTAGCAGGCTCTGTGC
1 TATTGCCTAGCAAGC-TT-TATGCCGGTGTATTAAATCAGGCTTATCACCTAGCAGACTCTGTGC
50993864 CGGTGTATTATA-CTAGGCT
64 CGGTGTATTATATC-AGGCT
50993883 T-TATGCCTAGCAA
1 TAT-TGCCTAGCAA
50993896 ATTTTATGTG
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
82 13 0.16
83 4 0.05
84 65 0.79
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (82 bp):
TATTGCCTAGCAAGCTTTATGCCGGTGTATTAAATCAGGCTTATCACCTAGCAGACTCTGTGCCG
GTGTATTATATCAGGCT
Found at i:51000489 original size:41 final size:41
Alignment explanation
Indices: 51000382--51000507 Score: 184
Period size: 41 Copynumber: 3.1 Consensus size: 41
51000372 CTTTATTGGT
* *
51000382 TAGCAGGCTTTGTGCCGGTGTGTTAAATCAGGCTTATTGCC
1 TAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCC
51000423 TAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCC
1 TAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCC
* *
51000464 TAGCAGGCTCTGTGCTGGTGTATTATA-CTAGGCTT-TATGCC
1 TAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCC
51000505 TAG
1 TAG
51000508 AAAATTTTAT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
40 2 0.03
41 77 0.97
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (41 bp):
TAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCC
Found at i:51002218 original size:17 final size:19
Alignment explanation
Indices: 51002104--51002221 Score: 70
Period size: 19 Copynumber: 6.2 Consensus size: 19
51002094 ACAAATTTTA
*
51002104 AAATTATAAATAATATAAT
1 AAATAATAAATAATATAAT
*
51002123 GAATAATATAA-ACATA-AAT
1 AAATAATA-AATA-ATATAAT
*
51002142 AATATAATAGATAATAT-AT
1 AA-ATAATAAATAATATAAT
* * *
51002161 -GAT-ATATATAACCTATAAA
1 AAATAATAAATAA--TATAAT
51002180 AAATAATAAATAATATAGAAT
1 AAATAATAAATAATAT--AAT
51002201 AAA-AATAAA-AATATAAT
1 AAATAATAAATAATATAAT
51002218 AAAT
1 AAAT
51002222 GTTATATAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 27
0.67 0.09 0.24
Matches are distributed among these distances:
16 7 0.09
17 8 0.11
18 3 0.04
19 26 0.34
20 20 0.26
21 12 0.16
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
AAATAATAAATAATATAAT
Found at i:51002220 original size:31 final size:30
Alignment explanation
Indices: 51002175--51002235 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
51002165 TATATAACCT
51002175 ATAAAAAATAATAAATAATATAGAATAAAA
1 ATAAAAAATAATAAATAATATAGAATAAAA
** *
51002205 ATAAAAATATAATAAATGTTATATAATAAAA
1 ATAAAAA-ATAATAAATAATATAGAATAAAA
51002236 TATATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (30 bp):
ATAAAAAATAATAAATAATATAGAATAAAA
Found at i:51002252 original size:25 final size:25
Alignment explanation
Indices: 51002204--51002271 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
51002194 ATAGAATAAA
51002204 AATAAAAATATAATAAATGTTATAT
1 AATAAAAATATAATAAATGTTATAT
** *
51002229 AATAAAATATATTTTAAATG-TATAGGA
1 AATAAAA-ATATAATAAATGTTATA--T
51002256 AATAAGAAATATAATA
1 AATAA-AAATATAATA
51002272 GTATAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 11 0.32
26 10 0.29
27 11 0.32
28 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (25 bp):
AATAAAAATATAATAAATGTTATAT
Found at i:51002368 original size:3 final size:3
Alignment explanation
Indices: 51002360--51002569 Score: 70
Period size: 3 Copynumber: 69.3 Consensus size: 3
51002350 AAGTAAAAAT
* * *
51002360 ATA ATA ATA AT- ATA AAA ATG ATA AT- GTA A-A ATA ATA ATA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* *
51002406 GTGA A-A ATA AAA CATA ATAA ATA ATA AT- ATAA ATA ATA TATA ATA
1 AT-A ATA ATA ATA -ATA AT-A ATA ATA ATA AT-A ATA ATA -ATA ATA
* * * *
51002451 A-A ATA AT- TTT ATA ATA TATA ATA A-A ATA AT- TTT ATA ATA TATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
51002494 AT- ATA A-A ATA AGGT- ATA ACA ATA A-A ACA ATTA ACA ATA TATA A-A
1 ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA A-TA ATA ATA -ATA ATA
51002538 TATA TATA TATA ATAA ATA ATA ATA ATA ATA A
1 -ATA -ATA -ATA AT-A ATA ATA ATA ATA ATA A
51002570 ACATATAGGG
Statistics
Matches: 158, Mismatches: 21, Indels: 56
0.67 0.09 0.24
Matches are distributed among these distances:
2 23 0.15
3 97 0.61
4 37 0.23
5 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51002464 original size:23 final size:23
Alignment explanation
Indices: 51002438--51002496 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
51002428 AATAATATAA
51002438 ATAATATATAATAAAATAATTTT
1 ATAATATATAATAAAATAATTTT
51002461 ATAATATATAATAAAATAATTTT
1 ATAATATATAATAAAATAATTTT
51002484 ATAATATATAATA
1 ATAATATATAATA
51002497 TAAAATAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAATATATAATAAAATAATTTT
Found at i:51003541 original size:13 final size:13
Alignment explanation
Indices: 51003523--51003549 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51003513 ATGATTCGAA
51003523 GCCTGGAATCACG
1 GCCTGGAATCACG
51003536 GCCTGGAATCACG
1 GCCTGGAATCACG
51003549 G
1 G
51003550 TGTTGATGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.15
Consensus pattern (13 bp):
GCCTGGAATCACG
Found at i:51004623 original size:194 final size:199
Alignment explanation
Indices: 51004262--51004757 Score: 720
Period size: 194 Copynumber: 2.5 Consensus size: 199
51004252 AATCTGGTAT
* * * *
51004262 CTTCGATCTGCTCTCTGCCAA-ATAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACAC
1 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * * * *
51004326 ATGAAAGCCAAATCAGCTGTGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCGTGTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
51004391 GGATCTGCTTTAGTATAACCATCTGAAGGTGAGA-T-C-TG-CT-CCCCATTGAAGTGGAGATGC
131 GGATCTACTTCAGTATAACCATCTGAAGGTGAGACTGCTTGTCTGCCCCATTGAAGTGGAGATGC
51004451 CAGA
196 CAGA
* *
51004455 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCGACGTAAGCAC
1 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
51004520 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
51004585 GGATCTACTTCAGTATAGA-CATCTGAAGTTTG-GATCTGCTATGTGTCTGCCCCATTGAAGTGG
131 GGATCTACTTCAGTATA-ACCATCTGAAG-GTGAGA-CTGC--T-TGTCTGCCCCATTGAAGTGG
51004648 AGATGCCAGA
190 AGATGCCAGA
* *
51004658 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAT
1 CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
51004723 GTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTC
51004758 TCCGCTAATA
Statistics
Matches: 271, Mismatches: 20, Indels: 14
0.89 0.07 0.05
Matches are distributed among these distances:
193 19 0.07
194 124 0.46
195 3 0.01
196 1 0.00
197 1 0.00
201 2 0.01
202 2 0.01
203 119 0.44
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (199 bp):
CTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAACCATCTGAAGGTGAGACTGCTTGTCTGCCCCATTGAAGTGGAGATGC
CAGA
Found at i:51004795 original size:44 final size:44
Alignment explanation
Indices: 51004729--51004836 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 44
51004719 ACATGTGAAA
* *
51004729 GCCAAATCAGCTATGTCTTCGATCTGCTCTCCG-CTAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTACTCTCCGAC-AATACAGAGAT
* * *
51004775 GCCAAATCTGGTATCTTCGATCTACTTTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTACTCTCCGACAATACAGAGAT
51004819 GCCAAATCTGCTATCTTC
1 GCCAAATCTGCTATCTTC
51004837 AACTTGTTCC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
44 43 0.78
45 1 0.02
46 11 0.20
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTACTCTCCGACAATACAGAGAT
Found at i:51017043 original size:17 final size:19
Alignment explanation
Indices: 51016930--51017046 Score: 70
Period size: 20 Copynumber: 6.2 Consensus size: 19
51016920 ATAAATTTTA
*
51016930 AAATTATAAATAATATAAT
1 AAATAATAAATAATATAAT
*
51016949 GAATAATATAA-ACATA-AAT
1 AAATAATA-AATA-ATATAAT
*
51016968 AATATAATAGATAATAT-AT
1 AA-ATAATAAATAATATAAT
* *
51016987 -GAT-ATATATAACCTATAA-
1 AAATAATAAATAA--TATAAT
51017005 AAATAATAAATAATATAGAAT
1 AAATAATAAATAATAT--AAT
51017026 AAA-AATAAA-AATATAAT
1 AAATAATAAATAATATAAT
51017043 AAAT
1 AAAT
51017047 GTTATATAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 29
0.67 0.07 0.26
Matches are distributed among these distances:
16 7 0.09
17 8 0.11
18 6 0.08
19 25 0.33
20 27 0.36
21 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
AAATAATAAATAATATAAT
Found at i:51017045 original size:31 final size:31
Alignment explanation
Indices: 51016956--51017060 Score: 86
Period size: 31 Copynumber: 3.2 Consensus size: 31
51016946 AATGAATAAT
* *
51016956 ATAAACATAAATAATATAATAGATAATATATGA
1 ATAAAAATAAA-AATATAATAAATAATATA-GA
*
51016989 TATATATAACCTATAAAA-ATAATAAATAATATAGA
1 -ATA-A-AA-ATA-AAAATATAATAAATAATATAGA
** *
51017024 ATAAAAATAAAAATATAATAAATGTTATATA
1 ATAAAAATAAAAATATAATAAATAATATAGA
51017055 ATAAAA
1 ATAAAA
51017061 TATATTTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
30 4 0.07
31 22 0.37
32 2 0.03
33 1 0.02
34 6 0.10
35 3 0.05
36 15 0.25
37 4 0.07
38 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (31 bp):
ATAAAAATAAAAATATAATAAATAATATAGA
Found at i:51017076 original size:25 final size:25
Alignment explanation
Indices: 51017029--51017096 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
51017019 ATAGAATAAA
51017029 AATAAAAATATAATAAATGTTATAT
1 AATAAAAATATAATAAATGTTATAT
** *
51017054 AATAAAATATATTTTAAAT-TTATAGGA
1 AATAAAA-ATATAATAAATGTTATA--T
51017081 AATAAGAAATATAATA
1 AATAA-AAATATAATA
51017097 GTATAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 12 0.35
26 9 0.26
27 11 0.32
28 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (25 bp):
AATAAAAATATAATAAATGTTATAT
Found at i:51017272 original size:15 final size:15
Alignment explanation
Indices: 51017238--51017304 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 15
51017228 TAATTTGTGA
* *
51017238 AAAATAAAACATAAT
1 AAAATAATATATAAT
51017253 -AAATAATA-AT-AT
1 AAAATAATATATAAT
51017265 -AAATAATATATAAT
1 AAAATAATATATAAT
*
51017279 AAAATAATTTTATAAT
1 AAAATAA-TATATAAT
*
51017295 -ATATAATATA
1 AAAATAATATA
51017305 AAAATAAGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
12 10 0.23
13 4 0.09
14 12 0.27
15 11 0.25
16 7 0.16
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAATAATATATAAT
Found at i:51017292 original size:27 final size:27
Alignment explanation
Indices: 51017218--51017293 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 27
51017208 ATAATGTAAA
*
51017218 ATAATAATAATAATTTGTGAAAAATAAAAC
1 ATAATAA-AATAATTT-T-ATAAATAAAAC
** * *
51017248 ATAAT-AAATAATAATATAAATAATAT
1 ATAATAAAATAATTTTATAAATAAAAC
51017274 ATAATAAAATAATTTTATAA
1 ATAATAAAATAATTTTATAA
51017294 TATATAATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 13 0.34
27 13 0.34
28 6 0.16
29 1 0.03
30 5 0.13
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
ATAATAAAATAATTTTATAAATAAAAC
Found at i:51021973 original size:13 final size:14
Alignment explanation
Indices: 51021949--51021979 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
51021939 TCGAAAAAGT
51021949 GAAAAAATAGAAAA
1 GAAAAAATAGAAAA
51021963 GAAAAAA-AGAAAA
1 GAAAAAATAGAAAA
51021976 GAAA
1 GAAA
51021980 TATTATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (14 bp):
GAAAAAATAGAAAA
Found at i:51025392 original size:15 final size:15
Alignment explanation
Indices: 51025372--51025406 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
51025362 TTTATGTTAT
51025372 AATAATAAAATGAAA-
1 AATAATAAAAT-AAAG
51025387 AATAATAAAATAAAG
1 AATAATAAAATAAAG
51025402 AATAA
1 AATAA
51025407 AGAAAATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (15 bp):
AATAATAAAATAAAG
Found at i:51027372 original size:46 final size:46
Alignment explanation
Indices: 51027320--51027487 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
51027310 TATTTGGGCA
*
51027320 TCCGAACTCGTTGAGTTGGGTCCGAGTTCACTTATGGATGCGAAA-G
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAACG
* * * *
51027366 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
51027413 TCTGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51027459 TCTGAACTCATTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
51027488 GTGAGATGTA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 54 0.55
47 26 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51027434 original size:47 final size:47
Alignment explanation
Indices: 51027372--51027535 Score: 192
Period size: 47 Copynumber: 3.5 Consensus size: 47
51027362 AAAGTCCGAA
51027372 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
* * * * * *
51027419 CTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCTGAG
* * *
51027465 CTCATTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
51027512 CTCGTTGAGTTGAGTCCGAGTTCG
1 CTCGTTGAGTTGAGTCCGAGTTCG
51027536 CGTATGGGCG
Statistics
Matches: 93, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 26 0.28
47 49 0.53
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
Found at i:51027542 original size:93 final size:93
Alignment explanation
Indices: 51027316--51027534 Score: 359
Period size: 93 Copynumber: 2.4 Consensus size: 93
51027306 CAGATATTTG
* * *
51027316 GGCATCCGAACTCGTTGAGTTGGGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAG
51027381 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
51027409 GGCATCTGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGC-AAACGTCTGAACTCATTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA-GTCCGAACTCATTGA
*
51027473 GTTGAGTCTGAGTTCGTGAGATGTAACTA
65 GTTGAGTCCGAGTTCGTGAGATGTAACTA
51027502 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
51027535 GCGTATGGGC
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 3 0.03
93 113 0.97
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51029124 original size:21 final size:19
Alignment explanation
Indices: 51029100--51029137 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51029090 AGTTTATGAT
51029100 ATATATATATGTGATAACA
1 ATATATATATGTGATAACA
51029119 ATATATATATGTGATAACA
1 ATATATATATGTGATAACA
51029138 CGTGAGATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (19 bp):
ATATATATATGTGATAACA
Found at i:51030566 original size:15 final size:15
Alignment explanation
Indices: 51030546--51030610 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
51030536 GTATCTTGGG
51030546 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
51030561 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
*
51030576 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51030591 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51030605 TTTCTT
1 TTTCTT
51030611 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 30 0.73
16 2 0.05
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51030577 original size:30 final size:30
Alignment explanation
Indices: 51030541--51030600 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
51030531 GTATCGTATC
*
51030541 TTGGGTTTCTTTAT-TCTGGATTTCTTTATT
1 TTGGGTTTCTCTATCT-TGGATTTCTTTATT
51030571 TTGGGTTTCTCTATCTTGGATTTCTTTATT
1 TTGGGTTTCTCTATCTTGGATTTCTTTATT
51030601 CGGTTTTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (30 bp):
TTGGGTTTCTCTATCTTGGATTTCTTTATT
Found at i:51033144 original size:92 final size:93
Alignment explanation
Indices: 51033027--51033281 Score: 359
Period size: 92 Copynumber: 2.8 Consensus size: 93
51033017 TTCAGATATT
* * *
51033027 TAGGCATCCGAACTCATTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTG
1 TAGGCATCCGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTG
*
51033092 AGTTGAGTCCGAGTTCGTGAGATTTAAC
66 AGTTGAGTCCGAGTTCGTGAGATATAAC
* * * * * * *
51033120 TAGGCATCCGAGCTCGTTG-GTGGAGTCCGAGTACACTTATGCATGCAAACATCTGAACTTATTC
1 TAGGCATCCGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTG
51033184 AGTTGAGTCCGAGTTCGTGAGATATAAC
66 AGTTGAGTCCGAGTTCGTGAGATATAAC
* * * * *
51033212 TAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTTGTTG
1 TAGGCATCCGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTG
51033277 AGTTG
66 AGTTG
51033282 GGTGGGCGGG
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
92 83 0.60
93 55 0.40
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
TAGGCATCCGAGCTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTG
AGTTGAGTCCGAGTTCGTGAGATATAAC
Found at i:51034870 original size:21 final size:19
Alignment explanation
Indices: 51034846--51034883 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51034836 AGTTTATGAT
51034846 ATATATATATGTGATAACA
1 ATATATATATGTGATAACA
51034865 ATATATATATGTGATAACA
1 ATATATATATGTGATAACA
51034884 CGTGAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (19 bp):
ATATATATATGTGATAACA
Found at i:51036311 original size:15 final size:15
Alignment explanation
Indices: 51036291--51036355 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
51036281 ATATCTTGGG
51036291 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
51036306 TTTCTTTTTTCTGGG
1 TTTCTTTATTCTGGA
*
51036321 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51036336 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51036350 TTTCTT
1 TTTCTT
51036356 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 10 0.24
15 29 0.71
16 2 0.05
ACGTcount: A:0.08, C:0.15, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51036323 original size:30 final size:30
Alignment explanation
Indices: 51036287--51036355 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
51036277 TATCATATCT
*
51036287 TGGGTTTCTTTAT-TCTGGATTTCTTTTTTC
1 TGGGTTTCTTTATCT-TGGATTTCTTTATTC
*
51036317 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
51036347 -GGTTTTCTT
1 TGGGTTTCTT
51036356 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.07, C:0.14, G:0.17, T:0.61
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:51038849 original size:46 final size:45
Alignment explanation
Indices: 51038778--51038950 Score: 136
Period size: 46 Copynumber: 3.8 Consensus size: 45
51038768 TTGGACATCC
* **
51038778 GAACTCGTTGAGTTAAGTCTAAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGTCT
* * * * *
51038824 GAACTCTTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATAT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---G--TCT
* * * *
51038871 GAGCTCTTTGAGTGGAGTCCGAGTTCACTTATGGATGTGAACATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGTCT
**
51038917 GAACTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51038951 GCGGGTAACA
Statistics
Matches: 98, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 53 0.54
47 26 0.27
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGTCT
Found at i:51052756 original size:685 final size:686
Alignment explanation
Indices: 51051445--51052792 Score: 1832
Period size: 685 Copynumber: 2.0 Consensus size: 686
51051435 TCATAATATT
* * *
51051445 TTTCCAAATGAGAAAAGATTGCCCAAATAGACAGGAAAACTCACAGATGCCAAATGTGACCCCCT
1 TTTCCAAATGAGAAAAGATTACCCAAATAGACAAGAAAACTCACAGATGCAAAATGTGACCCCCT
* * * * * ** *
51051510 CCGAGTACGAGTTGGGGCTCACGGATGAGGTCGAGGAAAAGGCTAGGATGCAAGGCAAGTTGGGT
66 CCGAATACGAGCTGGGACTCACGGACGAGGTCGAGGAAAAGGCAACAATGCAAGGCAAGTTGGGC
** * * *
51051575 AGCAAACTTTATCTCAAGTTGTTGCTACCCAAGATGAGTTAGGAGGCCTTGTACAAATCTATGTT
131 AGCAAACTTTATCTCAAGCAGTTGCTACCCAAGATGAGTTAGGAGCCCTCGAACAAATCTATGTT
* * * *
51051640 GTAACGGAACCACAAGATCAGGGCTCGACCGATGTTATCACAACTACTTTAACTCTACGAACTAT
196 ATAACGGAACCACAAGATCAGGGCTCGACCGATGTGATCACAACCACCTTAACTCTACGAACTAT
* * *
51051705 TCCATTTTTTCCTTCATTGAATCTAGTTCCATGCACTTGTATGCTTTGAGTGAACTAGCCTGTGA
261 TCCATTTTTTCCTTCATTGAATCTAGTTCCATGCACTAGTATGCTTTGAGCGAACTAGCCTATGA
* *
51051770 GTTGGGAATTCATGTAGAAATCATAGATAAAGGTGTGAGAGTCACTAGTTCATTTGGAGACAATA
326 GTTGGGAATTCAAGTAGAAATCATAGATAAAGGTGTGAGAGTCACTAGTTCATTTAGAGACAATA
*
51051835 TATTGGTCAATAAAGTGTACCACAAGTGTTCTTTACTAATCCAAGGCCAAGTTTTCTACACAAAG
391 TATTGGTCAATAAAGTGTACCACAAGTGTTCGTTACTAATCCAAGGCCAAGTTTTCTACACAAAG
* * *
51051900 TTTTAGAAGTTTCCATTCTATGTGTTTGATGTAATCTTGGGGATGAATTGGTTGGCTGAGCATAA
456 TTTAAGAAGTTGCCATTCTATGTGTTTGATGTAATCTTGGGAATGAATTGGTTGGCTGAGCATAA
* * *
51051965 AGCCAAGATTGACTTCAAATTGAAAAGAGTCCCTTTGTAAAATAGTGAAGACCAGGAAATTGTAG
521 AGCCAAGATTGACTTCAAACTGAAAAGAGTCACTTTGTAAAATAGTGAAGACCAGGAAATTATAG
* * * * * * * *
51052030 TGGCAGGTGAGTAACCTTAATTTATGTCTAATGCCATATTGACAATGAGAGTAGAAAAGATGTTG
586 TGGCAGGTGAGCAACCTCAATTAATGTATAATGCCATATTGACAATGAAAGCAAAAAAGATGTAG
51052095 GGTAAGGGCTACGGCCTATCTCACATTCCTGATGTG
651 GGTAAGGGCTACGGCCTATCTCACATTCCTGATGTG
* ** *
51052131 TTTCCAAATGAGAAAAGTTTACTTAGATAGACAAGAGAAA-TCACATG-TGCAAAATGTGACCCC
1 TTTCCAAATGAGAAAAGATTACCCAAATAGACAAGA-AAACTCACA-GATGCAAAATGTGACCCC
* * ** * *
51052194 CTCTGAATACGAGCTGGTACTCGTGGACGAGGTTGA-GAAAGAGGCAACAATTCAAGGCAAGTTG
64 CTCCGAATACGAGCTGGGACTCACGGACGAGGTCGAGGAAA-AGGCAACAATGCAAGGCAAGTTG
** * * * *
51052258 GGCAGTGAACTTTATCTTACA-CAGTTGCTAGCCAAGATGAGTTAGGATCCCTCGAACAAGTCTA
128 GGCAGCAAACTTTATCTCA-AGCAGTTGCTACCCAAGATGAGTTAGGAGCCCTCGAACAAATCTA
* * * *
51052322 TGTTATAAGGGAACCATAAGATTAGGGCTCGACCGATGTGATCACAACCACCTTCACTCTACGAA
192 TGTTATAACGGAACCACAAGATCAGGGCTCGACCGATGTGATCACAACCACCTTAACTCTACGAA
*
51052387 CTATTCCATTGTTTTCCTTCATTGAATCTAGTTCCATGCACTAGTATGTTTTGAGCGAACTAGCC
257 CTATTCCATT-TTTTCCTTCATTGAATCTAGTTCCATGCACTAGTATGCTTTGAGCGAACTAGCC
*
51052452 TATGAGTTGGGAATTCAAGTAGAAA-CA-AGATAAGGGTGTGAGAGTCACTAGTTCATTTAGAGA
321 TATGAGTTGGGAATTCAAGTAGAAATCATAGATAAAGGTGTGAGAGTCACTAGTTCATTTAGAGA
* * * * *
51052515 TAGTATATTGGTCAATAAAGTGTACCACAGGTGTTCGTTAGTGAA-CCAAGGGCAAGTTTTCTA-
386 CAATATATTGGTCAATAAAGTGTACCACAAGTGTTCGTTACT-AATCCAAGGCCAAGTTTTCTAC
** * * *
51052578 AGTGAAG-TTAAGGGAGTTGCCATTCTATGTGTTTGATGTGATCTTGGGAATGGATTGGTTGGCT
450 A-CAAAGTTTAA-GAAGTTGCCATTCTATGTGTTTGATGTAATCTTGGGAATGAATTGGTTGGCT
* * * * *
51052642 GAGTATAAAGCCAAGATTGATTTCAAACTGAAAAGAGTCACTTTGTGAAATAGTGAAGGCCGGGA
513 GAGCATAAAGCCAAGATTGACTTCAAACTGAAAAGAGTCACTTTGTAAAATAGTGAAGACCAGGA
* * * *
51052707 AATTATAGTGGTAGGTGAGCAACGTCAATTAATGTATAATTCCATATTGACAGTGAAAGCAAAAA
578 AATTATAGTGGCAGGTGAGCAACCTCAATTAATGTATAATGCCATATTGACAATGAAAGCAAAAA
51052772 AGATGTAGGGTAAGGGCTACG
643 AGATGTAGGGTAAGGGCTACG
51052793 AAGCATACCT
Statistics
Matches: 573, Mismatches: 81, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
684 4 0.01
685 273 0.48
686 217 0.38
687 79 0.14
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (686 bp):
TTTCCAAATGAGAAAAGATTACCCAAATAGACAAGAAAACTCACAGATGCAAAATGTGACCCCCT
CCGAATACGAGCTGGGACTCACGGACGAGGTCGAGGAAAAGGCAACAATGCAAGGCAAGTTGGGC
AGCAAACTTTATCTCAAGCAGTTGCTACCCAAGATGAGTTAGGAGCCCTCGAACAAATCTATGTT
ATAACGGAACCACAAGATCAGGGCTCGACCGATGTGATCACAACCACCTTAACTCTACGAACTAT
TCCATTTTTTCCTTCATTGAATCTAGTTCCATGCACTAGTATGCTTTGAGCGAACTAGCCTATGA
GTTGGGAATTCAAGTAGAAATCATAGATAAAGGTGTGAGAGTCACTAGTTCATTTAGAGACAATA
TATTGGTCAATAAAGTGTACCACAAGTGTTCGTTACTAATCCAAGGCCAAGTTTTCTACACAAAG
TTTAAGAAGTTGCCATTCTATGTGTTTGATGTAATCTTGGGAATGAATTGGTTGGCTGAGCATAA
AGCCAAGATTGACTTCAAACTGAAAAGAGTCACTTTGTAAAATAGTGAAGACCAGGAAATTATAG
TGGCAGGTGAGCAACCTCAATTAATGTATAATGCCATATTGACAATGAAAGCAAAAAAGATGTAG
GGTAAGGGCTACGGCCTATCTCACATTCCTGATGTG
Found at i:51055050 original size:28 final size:28
Alignment explanation
Indices: 51055010--51055094 Score: 170
Period size: 28 Copynumber: 3.0 Consensus size: 28
51055000 GTAAGGATAG
51055010 ATTCTTAGTAATCCCAACCTTCCAATCA
1 ATTCTTAGTAATCCCAACCTTCCAATCA
51055038 ATTCTTAGTAATCCCAACCTTCCAATCA
1 ATTCTTAGTAATCCCAACCTTCCAATCA
51055066 ATTCTTAGTAATCCCAACCTTCCAATCA
1 ATTCTTAGTAATCCCAACCTTCCAATCA
51055094 A
1 A
51055095 CATCGTAGAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.33, C:0.32, G:0.04, T:0.32
Consensus pattern (28 bp):
ATTCTTAGTAATCCCAACCTTCCAATCA
Found at i:51059931 original size:28 final size:28
Alignment explanation
Indices: 51059866--51059966 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51059856 ATAGTGAATC
*
51059866 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
51059895 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51059923 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
51059953 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51059967 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51067861 original size:28 final size:28
Alignment explanation
Indices: 51067796--51067896 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51067786 ATAGTGAATC
*
51067796 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
51067825 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51067853 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
51067883 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51067897 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51077012 original size:27 final size:27
Alignment explanation
Indices: 51076967--51077080 Score: 95
Period size: 27 Copynumber: 4.2 Consensus size: 27
51076957 CTGGGGCTCG
**
51076967 CCAGTTGGTTTGGCAAGCTAGGGTTCA
1 CCAGTTGGTTTGGTGAGCTAGGGTTCA
* * **
51076994 CCAGTTGGTCTGGTGAGCTGGGGGTTTG
1 CCAGTTGGTTTGGTGAGCT-AGGGTTCA
* * *
51077022 CCTA-TAGGTTTGGTGAGTTAGGGTTCT
1 CC-AGTTGGTTTGGTGAGCTAGGGTTCA
* * *
51077049 CCAATTGGATTGGTGAGCTGGGGTTCA
1 CCAGTTGGTTTGGTGAGCTAGGGTTCA
51077076 CCAGT
1 CCAGT
51077081 ATATGTCGAG
Statistics
Matches: 66, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
26 1 0.02
27 45 0.68
28 19 0.29
29 1 0.02
ACGTcount: A:0.15, C:0.16, G:0.37, T:0.32
Consensus pattern (27 bp):
CCAGTTGGTTTGGTGAGCTAGGGTTCA
Found at i:51079520 original size:40 final size:39
Alignment explanation
Indices: 51079445--51079669 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
51079435 AACCCAAGTA
* *
51079445 CCTTCAGGATTTAG-CCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACT-AGCACAAATG
* *
51079484 CCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
51079524 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
*
51079567 CCTTCGGGACTTCGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * * * *
51079607 CCTTCGAGACTTAACCCGAATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
51079647 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
51079670 CATCCGAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 12 0.08
40 108 0.68
41 2 0.01
43 36 0.23
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:51079565 original size:83 final size:80
Alignment explanation
Indices: 51079463--51079669 Score: 288
Period size: 83 Copynumber: 2.5 Consensus size: 80
51079453 ATTTAGCCGG
* * * * *
51079463 ATATAGCAACTCACACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
1 ATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGCCTT
* * *
51079528 CGGGACTTAGCCCGG
66 CGAGACTTAACCCGA
* *
51079543 GTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGCCACTAGCACAAATGC
1 ATATAG-AA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
51079608 CTTCGAGACTTAACCCGA
63 CTTCGAGACTTAACCCGA
*
51079626 ATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 ATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
51079670 CATCCGAATA
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 40 0.36
81 1 0.01
82 1 0.01
83 69 0.62
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (80 bp):
ATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGCCTT
CGAGACTTAACCCGA
Found at i:51081953 original size:2 final size:2
Alignment explanation
Indices: 51081946--51081973 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51081936 CGGCTCTAGC
51081946 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51081974 GTTGCACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51082817 original size:40 final size:39
Alignment explanation
Indices: 51082684--51082860 Score: 144
Period size: 40 Copynumber: 4.5 Consensus size: 39
51082674 TCGAATGGTG
* *
51082684 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC--AGTTACTAAAT
* * *
51082725 CCGGG-TCAACT-CCGAAGGCATTTGTGCAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCAGTTACTAAAT
* * * *
51082763 CTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTAAAT
* ** * *
51082803 CCGGGCTAATTCCCGAAGGCAACTGTGCGAATCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTA-AAT
*
51082843 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
51082861 ACAATCGAGC
Statistics
Matches: 109, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
38 15 0.14
39 16 0.15
40 68 0.62
41 10 0.09
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTACTAAAT
Found at i:51082881 original size:40 final size:40
Alignment explanation
Indices: 51082803--51082886 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
51082793 GTTATTAAAT
* *
51082803 CCGGGCTAATTCCCGAAGGCAACTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAACTGAGCGAATCACTATAA
* * *
51082843 CCGGGCT-ATGTCCCGAAGACAA-TCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAACT-GAGCGAATCACTATAA
51082883 CCGG
1 CCGG
51082887 TTAAATTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAACTGAGCGAATCACTATAA
Found at i:51089969 original size:13 final size:13
Alignment explanation
Indices: 51089951--51089975 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51089941 CTTTGCTAAA
51089951 TGAATTATGCTTG
1 TGAATTATGCTTG
51089964 TGAATTATGCTT
1 TGAATTATGCTT
51089976 AGTACAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGAATTATGCTTG
Found at i:51091636 original size:40 final size:39
Alignment explanation
Indices: 51091525--51091674 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
51091515 TTAATCACGT
* * *
51091525 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
51091565 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
51091605 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
51091645 GCATATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAT
51091675 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
38 13 0.14
39 11 0.12
40 67 0.74
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:51092522 original size:17 final size:19
Alignment explanation
Indices: 51092499--51092544 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51092489 AAGAAGCATG
51092499 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51092517 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51092535 AATCATGCTC
1 AATCATGCTC
51092545 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51099626 original size:40 final size:39
Alignment explanation
Indices: 51099515--51099665 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
51099505 TTAATCACGT
* * *
51099515 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
51099555 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
51099595 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
51099635 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
51099666 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:51099649 original size:80 final size:79
Alignment explanation
Indices: 51099515--51099665 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51099505 TTAATCACGT
*
51099515 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
51099580 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51099595 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
51099658 CCGGATAT
64 CCGGATAT
51099666 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51100513 original size:17 final size:19
Alignment explanation
Indices: 51100490--51100535 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51100480 AAGAAGCATG
51100490 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51100508 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51100526 AATCATGCTC
1 AATCATGCTC
51100536 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51113921 original size:35 final size:30
Alignment explanation
Indices: 51113854--51113916 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
51113844 TATTTCACAG
51113854 TTTAGTCCCTCAAATTATTATTTTCTTTTC
1 TTTAGTCCCTCAAATTATTATTTTCTTTTC
51113884 TTTAGTCCCTCAAATTATTATTTTCTTTTC
1 TTTAGTCCCTCAAATTATTATTTTCTTTTC
51113914 TTT
1 TTT
51113917 TCTTTCTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.03, T:0.59
Consensus pattern (30 bp):
TTTAGTCCCTCAAATTATTATTTTCTTTTC
Found at i:51122842 original size:8 final size:8
Alignment explanation
Indices: 51122831--51122856 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
51122821 AGTGGGCCTG
51122831 TTGGCCCA
1 TTGGCCCA
51122839 TTGGCCCA
1 TTGGCCCA
51122847 TTGGCCCA
1 TTGGCCCA
51122855 TT
1 TT
51122857 TTTGGCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.35, G:0.23, T:0.31
Consensus pattern (8 bp):
TTGGCCCA
Found at i:51125524 original size:27 final size:27
Alignment explanation
Indices: 51125436--51125524 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
51125426 ATAAAAATTG
51125436 AAAATATTGTAATTCAGTTTCATCAAT
1 AAAATATTGTAATTCAGTTTCATCAAT
* * * ***
51125463 AAAATAATGTTA-TC-CTTATCAATGTCTCG
1 AAAATATTGTAATTCAGTT-TC-A--TCAAT
51125492 AAAATATTGTAATTCAGTTTCATCAAT
1 AAAATATTGTAATTCAGTTTCATCAAT
51125519 AAAATA
1 AAAATA
51125525 ATTCTCTTAG
Statistics
Matches: 44, Mismatches: 12, Indels: 12
0.65 0.18 0.18
Matches are distributed among these distances:
25 2 0.05
26 4 0.09
27 19 0.43
29 13 0.30
30 4 0.09
31 2 0.05
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (27 bp):
AAAATATTGTAATTCAGTTTCATCAAT
Found at i:51127881 original size:18 final size:19
Alignment explanation
Indices: 51127854--51127889 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51127844 GAACTTATCA
*
51127854 ATGCATATTTTA-AAAATG
1 ATGCACATTTTATAAAATG
51127872 ATGCACATTTTATAAAAT
1 ATGCACATTTTATAAAAT
51127890 TTCCTATCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (19 bp):
ATGCACATTTTATAAAATG
Found at i:51132538 original size:12 final size:12
Alignment explanation
Indices: 51132521--51132545 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51132511 AGTCAATTAA
51132521 CGATGCCAATGT
1 CGATGCCAATGT
51132533 CGATGCCAATGT
1 CGATGCCAATGT
51132545 C
1 C
51132546 CCAGACATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (12 bp):
CGATGCCAATGT
Found at i:51133345 original size:18 final size:20
Alignment explanation
Indices: 51133307--51133345 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51133297 TACATTACCA
51133307 AGAAATAATCACAAAAGCGT
1 AGAAATAATCACAAAAGCGT
*
51133327 AGAAATCATCA-AAAA-CGT
1 AGAAATAATCACAAAAGCGT
51133345 A
1 A
51133346 TCAAAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (20 bp):
AGAAATAATCACAAAAGCGT
Found at i:51136474 original size:39 final size:39
Alignment explanation
Indices: 51136372--51136538 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 39
51136362 AAATTGAATG
* * *
51136372 ATATCCGGGCTAAGCCCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
51136412 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGGTT
**
51136452 ATATCC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* *
51136491 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
51136531 ATATCCGG
1 ATATCCGG
51136539 TTATATTCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 30 0.29
40 67 0.64
41 2 0.02
43 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:51149028 original size:29 final size:29
Alignment explanation
Indices: 51148929--51149058 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
51148919 ACTCGATTTC
* * **
51148929 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
51148958 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
51148986 CGCACAC-CAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
51149015 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
51149044 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
51149059 ATCTCGTCAC
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.27
29 60 0.73
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:51152906 original size:47 final size:45
Alignment explanation
Indices: 51152819--51152944 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 45
51152809 TCTCTATCGA
* * *
51152819 GGCCGATGCATGTCCTAGACATGTCTTACTCTGGCACTCAT-CTCTCT
1 GGCCGATGCATGTCCCAGACATGTCTTACACT-GCACTCATAAT-T-T
*
51152866 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATAATTT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTGCACTCATAATTT
* *
51152912 GGCTGAAGCATGTCCCAGACATGTCTTACACTG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTG
51152945 GTGCACAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 11 0.16
46 22 0.32
47 26 0.38
48 10 0.14
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGCACTCATAATTT
Found at i:51156261 original size:40 final size:40
Alignment explanation
Indices: 51156134--51156263 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51156124 ATGCTGGAAA
* * *
51156134 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
51156174 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51156214 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51156254 TTATATCCGG
1 TTATATCCGG
51156264 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51164309 original size:40 final size:40
Alignment explanation
Indices: 51164182--51164309 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
51164172 ATGCTGGAAA
* * *
51164182 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * ** **
51164222 CTACATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51164262 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51164302 TTATATCC
1 TTATATCC
51164310 AGTTATATTC
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51169644 original size:39 final size:39
Alignment explanation
Indices: 51169590--51169667 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
51169580 CATGAAAAAC
* *
51169590 TTAGAAAATTTCATGCATCAAGGCTCCACATGCCTGTGT
1 TTAGAAAATTTCATGCATCAAGGCTCCACACGCCCGTGT
51169629 TTAGAAAATTTCATGCATCAAGGCTCCACACGCCCGTGT
1 TTAGAAAATTTCATGCATCAAGGCTCCACACGCCCGTGT
51169668 GAGTATAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (39 bp):
TTAGAAAATTTCATGCATCAAGGCTCCACACGCCCGTGT
Found at i:51170870 original size:47 final size:46
Alignment explanation
Indices: 51170814--51170939 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
51170804 CTGTCGAAGT
* * *
51170814 CGATGCATGTCCCAGACATGTCTTACTCTGGCACTCAT-CTCTGTAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATGTG-AC
* * *
51170860 CGATGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATGTGAC
* *
51170908 TGAAGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
51170940 GCACAAATCA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 17 0.25
47 28 0.41
48 20 0.29
49 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATGTGAC
Found at i:51184226 original size:29 final size:29
Alignment explanation
Indices: 51184193--51184324 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
51184183 GTGACGAGAT
*
51184193 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
51184222 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
51184251 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
51184280 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
51184309 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
51184325 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:51186464 original size:46 final size:46
Alignment explanation
Indices: 51186414--51186586 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
51186404 TTGGGCATCC
* *
51186414 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCT
* * * *
51186460 GAACTCATTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGCAT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATGCCT
* * * * * *
51186505 CCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 -GAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCT
*
51186553 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
51186587 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
45 3 0.03
46 55 0.56
47 21 0.21
48 3 0.03
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCT
Found at i:51186566 original size:93 final size:93
Alignment explanation
Indices: 51186407--51186578 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
51186397 AGGATGTTTG
* * *
51186407 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
51186472 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
51186500 GGCATCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGA
51186564 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
51186579 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51187538 original size:17 final size:17
Alignment explanation
Indices: 51187516--51187549 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51187506 TCTAGTTTTA
51187516 TTAGAAGCAAACGGTAT
1 TTAGAAGCAAACGGTAT
51187533 TTAGAAGCAAACGGTAT
1 TTAGAAGCAAACGGTAT
51187550 AGTCATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
TTAGAAGCAAACGGTAT
Found at i:51189550 original size:14 final size:15
Alignment explanation
Indices: 51189501--51189550 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
51189491 GTATCTTGGG
*
51189501 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
51189516 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51189531 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51189545 TTTCTT
1 TTTCTT
51189551 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51191989 original size:46 final size:46
Alignment explanation
Indices: 51191939--51192114 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
51191929 TGTTTGGGCA
*
51191939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
51191985 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
** *
51192032 TCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51192078 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51192115 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51192094 original size:93 final size:93
Alignment explanation
Indices: 51191935--51192106 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
51191925 AGGATGTTTG
* *
51191935 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
51192000 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
** * *
51192028 GGCATCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
51192093 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
51192107 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:51197983 original size:55 final size:53
Alignment explanation
Indices: 51197862--51198115 Score: 245
Period size: 53 Copynumber: 4.8 Consensus size: 53
51197852 ATTAGGGTTT
* ** *
51197862 AAGGATACCGTGTAAGACCATACCAAG-GATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
51197916 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
51197971 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
51198024 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
51198073 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
51198116 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 44 0.26
54 30 0.18
55 44 0.26
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:51198067 original size:108 final size:109
Alignment explanation
Indices: 51197872--51198068 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 109
51197862 AAGGATACCG
*
51197872 TGTAAGACCATACCAAGGATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCAT
1 TGTAAGACCATACCAAGGATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCAT
*
51197937 GTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
51197981 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATACCAAGG-ATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
51198043 ATGTCAAGACATGGCAATGGTAAGTT
64 ATGTCAAGACATGGCAATGATAAGTT
51198069 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
107 3 0.04
108 48 0.60
109 24 0.30
110 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
TGTAAGACCATACCAAGGATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:51198333 original size:16 final size:16
Alignment explanation
Indices: 51198312--51198342 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51198302 ATAAATTTGA
51198312 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
51198328 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
51198343 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:51201030 original size:23 final size:24
Alignment explanation
Indices: 51200997--51201042 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
51200987 GCATCACATT
*
51200997 TCATATACCAAAATCAAACCATAA
1 TCATATACCAAAACCAAACCATAA
*
51201021 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
51201043 TCACATGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:51201704 original size:43 final size:42
Alignment explanation
Indices: 51201592--51201740 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 42
51201582 AATGCCAACG
* * *
51201592 TCCCAGACGTGGTCTTACATGT-AATTAAATATCGATGCCACTA
1 TCCCAGACATGGTCTTACACGTAAATCAAATA-CGATGCCA-TA
* * * *
51201635 TCCCA-ACCAGGGTCTTATAC-AAAATCAAATACGATGCCGATG
1 TCCCAGA-CATGGTCTTACACGTAAATCAAATACGATGCC-ATA
*
51201677 TCCCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAACA
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATGCC-ATA
*
51201721 TCCCAGACGT-GTCTTACACG
1 TCCCAGACATGGTCTTACACG
51201741 ATAACACATA
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
42 25 0.29
43 40 0.47
44 19 0.22
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATACGATGCCATA
Found at i:51203445 original size:75 final size:75
Alignment explanation
Indices: 51203317--51203456 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 75
51203307 CAGGCAAATG
* *
51203317 CTTTCATCAGTTAATTTGACTAGTGCAGGGAGCACCATTATACTCGTCGATTTATCCGACTAGCA
1 CTTTCATCAGTTAATCTGACTAGTGCAGGCAGCACCATTATACTCGTCGATTTATCCGACTAGCA
51203382 TTGGGCGTAA
66 TTGGGCGTAA
* * **
51203392 CTTTCGTCAGTTTATCTGACTAGTGCTAGGCA-CACCATTATACTCGTTC-ATTTATTTGACTAG
1 CTTTCATCAGTTAATCTGACTAGTGC-AGGCAGCACCATTATACTCG-TCGATTTATCCGACTAG
51203455 CA
64 CA
51203457 CTGGACACAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
75 51 0.89
76 6 0.11
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (75 bp):
CTTTCATCAGTTAATCTGACTAGTGCAGGCAGCACCATTATACTCGTCGATTTATCCGACTAGCA
TTGGGCGTAA
Found at i:51204910 original size:40 final size:40
Alignment explanation
Indices: 51204827--51205046 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
51204817 ACCCAAGTAT
** * *
51204827 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51204865 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51204905 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51204945 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
51204985 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51205025 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
51205047 CATTCGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 127 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51211993 original size:38 final size:39
Alignment explanation
Indices: 51211880--51212022 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
51211870 CCGCACAAAG
*
51211880 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
51211920 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
51211959 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
51211997 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
51212023 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:51212001 original size:77 final size:79
Alignment explanation
Indices: 51211840--51212021 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
51211830 TCGTTCAAAC
* * **
51211840 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
51211905 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
51211920 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
51211983 CAATTTGCACAATT
66 CAATTTGCACAATT
51211997 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
51212022 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:51220840 original size:18 final size:19
Alignment explanation
Indices: 51220814--51220852 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
51220804 TTTCAATTCA
*
51220814 ATTCAAATAATCAATATAT
1 ATTCAAATAATAAATATAT
*
51220833 ATTC-AATATTAAATATAT
1 ATTCAAATAATAAATATAT
51220851 AT
1 AT
51220853 ATCTATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATAAATATAT
Found at i:51221332 original size:38 final size:39
Alignment explanation
Indices: 51221210--51221352 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
51221200 CCGCACAAAG
* * *
51221210 GCCTTCGGGACTTAACCCAGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTTGCACAATT
* *
51221250 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTTGCACAATT
*
51221289 GCCTTCGGGCTTAGCCCGGGTATCACAA-TTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTTGCACAATT
51221327 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
51221353 TCGAACATTC
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 34 0.36
39 51 0.54
40 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTTGCACAATT
Found at i:51221334 original size:77 final size:79
Alignment explanation
Indices: 51221201--51221351 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 79
51221191 TTATGGAACC
51221201 CGCACAAAGGCCTTCGGGACTTAACCCAGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAAGGCCTTCGGGACTTAACCCAGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
51221266 CGGATATCATAACT
66 CGGATATCATAACT
** * * *
51221280 CGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCACAA-TTGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAAGGCCTTCGGGACTTAACCCAGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
51221343 CGGATATCA
66 CGGATATCA
51221352 CTCGAACATT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
77 35 0.52
78 16 0.24
79 16 0.24
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (79 bp):
CGCACAAAGGCCTTCGGGACTTAACCCAGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAACT
Found at i:51225794 original size:40 final size:40
Alignment explanation
Indices: 51225711--51225930 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
51225701 ACCCAAGTAT
** * *
51225711 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51225749 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51225789 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51225829 CTTCAGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
51225869 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51225909 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
51225931 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 125 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51231883 original size:11 final size:11
Alignment explanation
Indices: 51231845--51231886 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
51231835 AAAGCATGTG
*
51231845 ATTATGTGATT
1 ATTAAGTGATT
*
51231856 ATTAAGCGATT
1 ATTAAGTGATT
*
51231867 A-GAAGTGATT
1 ATTAAGTGATT
51231877 ATTAAGTGAT
1 ATTAAGTGAT
51231887 ATGTGATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.40
Consensus pattern (11 bp):
ATTAAGTGATT
Found at i:51233118 original size:50 final size:50
Alignment explanation
Indices: 51233050--51233366 Score: 334
Period size: 50 Copynumber: 6.3 Consensus size: 50
51233040 AATGGTTTTC
** * *
51233050 GGTCACGTGTGTAGTACTAAGTTTAGGCTACTACGTGTACCAAATCGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * * * * * * *
51233100 GGTCACATATGTAGTACTATGTGCAGGCTACTATGCGAACCCGATAGCTTC
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTA
* * *
51233151 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCC-GATGGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAGTTA
*
51233201 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * *
51233251 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TT-A
* * ** * * *
51233303 -ATCACTTGTGTAGTACTAAGAACATGCTACTACGTGTATTCA-ATGGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAGTTA
51233352 GGTCACGTGTGTAGT
1 GGTCACGTGTGTAGT
51233367 GTAACACCCC
Statistics
Matches: 219, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
49 3 0.01
50 139 0.63
51 73 0.33
52 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
Found at i:51233286 original size:151 final size:151
Alignment explanation
Indices: 51233050--51233366 Score: 481
Period size: 151 Copynumber: 2.1 Consensus size: 151
51233040 AATGGTTTTC
**
51233050 GGTCACGTGTGTAGTACTAAGTTTAGGCTACTACGTGTACCAAATCGTTAGGTCACATATGTAGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATCGTTAGGTCACATATGTAGT
* * **
51233115 ACTATGTGCAGGCTACTATGCGAACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGAACCCGATAGCTTCAATCACGTGTGTAGTACTAAGAACAGGCT
*
51233180 ACTACATGTATCCGATGGTTA
131 ACTACATGTATCCAATGGTTA
* * * *
51233201 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATCGTTAGGTCACATATGTAGT
* * * *
51233266 ACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCAATCACTTGTGTAGTACTAAGAACATGCT
66 ACTAAGTGCAGGCTACTATGCGAACCCGATAGCTTCAATCACGTGTGTAGTACTAAGAACAGGCT
* *
51233331 ACTACGTGTATTCAATGGTTA
131 ACTACATGTATCCAATGGTTA
51233352 GGTCACGTGTGTAGT
1 GGTCACGTGTGTAGT
51233367 GTAACACCCC
Statistics
Matches: 149, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 149 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (151 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATCGTTAGGTCACATATGTAGT
ACTAAGTGCAGGCTACTATGCGAACCCGATAGCTTCAATCACGTGTGTAGTACTAAGAACAGGCT
ACTACATGTATCCAATGGTTA
Found at i:51233316 original size:101 final size:98
Alignment explanation
Indices: 51233050--51233366 Score: 323
Period size: 101 Copynumber: 3.2 Consensus size: 98
51233040 AATGGTTTTC
** * *
51233050 GGTCACGTGTGTAGTACTAAGTTTAGGCTACTACGTGTACCAAATCGTTAGGTCACATATGTAGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAT-GTTAGGTCACATGTGTAGT
* * * * * *
51233115 ACTATGTGCAGGCTACTATGCGAACCCGATAGCTTC
64 ACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTA
* * *
51233151 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCCGATGGTTAGGTCACGTGTGTAGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAT-GTTAGGTCACATGTGTAGT
*
51233216 ACTAAGTGCAGGCTACTACGTGTACCAGATTGTTA
64 ACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * * *
51233251 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCA-ATCACTTGTGTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAT-G-TT-AGGTCACATGTGTA
** * * *
51233315 GTACTAAGAACATGCTACTACGTGTATTCA-ATGGTTA
62 GTACTAAGTGCAGGCTACTACGTGTA-CCAGATAGTTA
51233352 GGTCACGTGTGTAGT
1 GGTCACGTGTGTAGT
51233367 GTAACACCCC
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
99 2 0.01
100 41 0.22
101 136 0.74
102 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (98 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATAGTTA
Found at i:51248116 original size:46 final size:46
Alignment explanation
Indices: 51248066--51248236 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
51248056 GTTGAGCATT
51248066 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
* * *
51248112 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--C
* * *
51248159 TGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
* *
51248205 CGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51248237 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 56 0.54
47 27 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
Found at i:51248489 original size:19 final size:20
Alignment explanation
Indices: 51248461--51248498 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51248451 ATAAGGTGGT
51248461 AAGATGATGA-ATGATGTTTA
1 AAGATGATGATAT-ATGTTTA
51248481 AAGAT-ATGATATATGTTT
1 AAGATGATGATATATGTTT
51248499 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGATATATGTTTA
Found at i:51252671 original size:79 final size:80
Alignment explanation
Indices: 51252528--51252735 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
51252518 ACCTTCGGAG
* * ** * * * *
51252528 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
51252592 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
51252607 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
51252669 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
51252686 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
51252736 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:51252680 original size:40 final size:40
Alignment explanation
Indices: 51252628--51252735 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
51252618 TATCACGATT
** *
51252628 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
51252668 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
51252708 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
51252736 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:51256451 original size:17 final size:17
Alignment explanation
Indices: 51256429--51256463 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
51256419 TTGATCGAAA
51256429 CTTTTTTGGCATTTCTC
1 CTTTTTTGGCATTTCTC
51256446 CTTTTTTGGCATTTCTC
1 CTTTTTTGGCATTTCTC
51256463 C
1 C
51256464 GTCCATTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.11, T:0.57
Consensus pattern (17 bp):
CTTTTTTGGCATTTCTC
Found at i:51260807 original size:79 final size:80
Alignment explanation
Indices: 51260664--51260871 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
51260654 ACCTTCGGAG
* * ** * * * *
51260664 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
51260728 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
51260743 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
51260805 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
51260822 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
51260872 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Done.