Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 183 of 444
Found at i:51260816 original size:40 final size:40
Alignment explanation
Indices: 51260764--51260871 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
51260754 TATCACGATT
** *
51260764 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
51260804 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
51260844 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
51260872 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:51263814 original size:16 final size:16
Alignment explanation
Indices: 51263773--51263818 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
51263763 GGTAAGTTTT
51263773 CTTTAGATT-TG-AAA
1 CTTTAGATTGTGAAAA
* * *
51263787 CTATAAACTGTGAAAA
1 CTTTAGATTGTGAAAA
51263803 CTTTAGATTGTGAAAA
1 CTTTAGATTGTGAAAA
51263819 TGATAGATAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 6 0.25
15 2 0.08
16 16 0.67
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
CTTTAGATTGTGAAAA
Found at i:51265773 original size:40 final size:40
Alignment explanation
Indices: 51265718--51265881 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
51265708 TGAATGATAC
* * *
51265718 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
51265758 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
51265798 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
51265838 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
51265878 CCGG
1 CCGG
51265882 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:51265851 original size:80 final size:80
Alignment explanation
Indices: 51265718--51265895 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
51265708 TGAATGATAC
* * * * * *
51265718 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
51265782 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
51265798 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
51265863 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
51265878 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
51265896 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:51271249 original size:28 final size:28
Alignment explanation
Indices: 51271217--51271315 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
51271207 GCAATAAGCC
*
51271217 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
51271245 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
51271273 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
51271302 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51271316 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:51278931 original size:28 final size:28
Alignment explanation
Indices: 51278899--51278997 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
51278889 GCAATAAGCC
*
51278899 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
51278927 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
51278955 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
51278984 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51278998 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:51283453 original size:43 final size:43
Alignment explanation
Indices: 51283408--51283562 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
51283398 TGAGATATCG
* * * *
51283408 TGTAAGACCGTGTCTGGGACATTGGAATCGATTAAAGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATTATAGATTACA
* *
51283451 TGTAAGACCATGTTTGGGACATTGGCATCGTATT-TA-ATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCG-ATTATAGATTACA
* * * *
51283493 TGTAAGACCTTGTCAGGGACAGTGGCATCGA-TATTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATTATAGATTACA
* *
51283535 TATAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
51283563 TGTACAAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 58 0.63
43 28 0.30
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATTATAGATTACA
Found at i:51283555 original size:84 final size:86
Alignment explanation
Indices: 51283367--51283562 Score: 218
Period size: 84 Copynumber: 2.3 Consensus size: 86
51283357 TGATTTCGTG
* * * * * *
51283367 TAAGACCACGCCTGGGATATTAGCATCTACTTGAGATATCGTGTAAGACCGTGTCTGGGACATTG
1 TAAGACCACGTCTGGGACATTGGCATCTACTTGAGATATCATGTAAGACCGTGTCAGGGACAGTG
* *
51283432 GAATCGATTAAAGATTACGTG
66 GAATCGATTAAAGATTACATA
* * * * *
51283453 TAAGACCATGTTTGGGACATTGGCATCGTA-TTTA-ATTTCATGTAAGACCTTGTCAGGGACAGT
1 TAAGACCACGTCTGGGACATTGGCATC-TACTTGAGATATCATGTAAGACCGTGTCAGGGACAGT
* **
51283516 GGCATCGA-TATTGATTACATA
65 GGAATCGATTAAAGATTACATA
51283537 TAAGACCACGTCTGGGACATTGGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
51283563 TGTACAAGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
84 33 0.36
85 31 0.34
86 25 0.27
87 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (86 bp):
TAAGACCACGTCTGGGACATTGGCATCTACTTGAGATATCATGTAAGACCGTGTCAGGGACAGTG
GAATCGATTAAAGATTACATA
Found at i:51299757 original size:40 final size:40
Alignment explanation
Indices: 51299667--51299891 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
51299657 TCGAATGATG
* * *
51299667 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51299707 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51299746 TCCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51299786 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * ** *
51299826 TTCGGGTTAAGTCCCGAAGGCATTTACGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
51299867 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51299892 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.22
40 116 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51304947 original size:8 final size:8
Alignment explanation
Indices: 51304929--51304959 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
51304919 TGAGTATTGG
51304929 TTTTA-TT
1 TTTTATTT
51304936 TTTTATTT
1 TTTTATTT
51304944 TTTTATTT
1 TTTTATTT
51304952 TTTTATTT
1 TTTTATTT
51304960 GGTTAAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTATTT
Found at i:51305479 original size:26 final size:27
Alignment explanation
Indices: 51305422--51305486 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 27
51305412 AGTGAGCACT
**
51305422 ATCGGGAATATCACAAAGAGCCAATTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
* *
51305449 A-CGGGAAGCTCACGAAGAGCC-TTTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
*
51305474 ATCGGGATGCTCA
1 ATCGGGAAGCTCA
51305487 TAAGAGCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.12
26 27 0.84
27 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
ATCGGGAAGCTCACAAAGAGCCAATTA
Found at i:51306594 original size:27 final size:27
Alignment explanation
Indices: 51306564--51306678 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 27
51306554 TAAGTTGTAG
*
51306564 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
51306591 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
** *
51306618 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* * * *
51306645 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
51306672 AATTACC
1 AATTACC
51306679 ATTTTGCCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:51309500 original size:26 final size:27
Alignment explanation
Indices: 51309443--51309507 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 27
51309433 AGTGAGCACT
**
51309443 ATCGGGAATATCACAAAGAGCCAATTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
* *
51309470 A-CGGGAAGCTCACGAAGAGCC-TTTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
*
51309495 ATCGGGATGCTCA
1 ATCGGGAAGCTCA
51309508 TAAGAGCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.12
26 27 0.84
27 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
ATCGGGAAGCTCACAAAGAGCCAATTA
Found at i:51310615 original size:27 final size:27
Alignment explanation
Indices: 51310585--51310699 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 27
51310575 TAAGTTGTAG
*
51310585 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
51310612 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
** *
51310639 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* * * *
51310666 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
51310693 AATTACC
1 AATTACC
51310700 ATTTTGCCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:51311469 original size:26 final size:27
Alignment explanation
Indices: 51311440--51311499 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
51311430 CCACATATAT
*
51311440 ATATCTGT-TCTGGTGGCCTAGTCACA
1 ATATCTGTATCTGGTGACCTAGTCACA
* *
51311466 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGTCACA
51311493 ATATCTG
1 ATATCTG
51311500 GCAGCCTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGTCACA
Found at i:51314227 original size:40 final size:40
Alignment explanation
Indices: 51314168--51314319 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
51314158 CATTTGAATG
* * *
51314168 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* *
51314208 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATT
* * **
51314248 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* * * *
51314288 AAATCCGGGTTAAGACCCGAAGGTAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51314320 TTGTGGCTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 92 0.97
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
Found at i:51314331 original size:80 final size:79
Alignment explanation
Indices: 51314168--51314339 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 79
51314158 CATTTGAATG
* * ** * *
51314168 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGAA
* *
51314233 TTCGTGCGAGTTGTT
65 TTCGTGCGAGTGGCT
* * *
51314248 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGTA
1 ATATCCG-GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGG-A
**
51314313 ATT-GTGCTTGTGGCT
64 ATTCGTGCGAGTGGCT
51314328 ATATCCGGCTAA
1 ATATCCGGCTAA
51314340 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 6 0.08
80 68 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGAAT
TCGTGCGAGTGGCT
Found at i:51314334 original size:40 final size:40
Alignment explanation
Indices: 51314168--51314339 Score: 161
Period size: 40 Copynumber: 4.3 Consensus size: 40
51314158 CATTTGAATG
* * * *
51314168 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* *
51314208 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
* * * * *
51314248 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* * * * *
51314288 AAATCCGGGTTAAGACCCGAAGGTAATTGTGCTTGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
51314328 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51314340 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 8 0.08
40 94 0.89
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
Found at i:51331417 original size:6 final size:6
Alignment explanation
Indices: 51331399--51331507 Score: 91
Period size: 6 Copynumber: 17.8 Consensus size: 6
51331389 TAAAAACATT
* *
51331399 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTATGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
51331448 ATCAGA ATCAGA ATCAGA ATCAGTA A-CAGGTA A-CAGA ATCAAA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAG-A ATCA-G-A ATCAGA ATCAGA ATCAGA
*
51331497 ATCAGT ATCAG
1 ATCAGA ATCAG
51331508 GTAACAGAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
5 5 0.06
6 71 0.80
7 11 0.12
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:51331485 original size:31 final size:31
Alignment explanation
Indices: 51331419--51331519 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 31
51331409 GAATCAGAAT
* * *
51331419 CAGAATCAGAATCAGAATTATGTGATA-G-AA
1 CAGAATCAGAATCAGAATCA-GTAACAGGTAA
51331449 TCAGAATCAGAATCAGAATCAGTAACAGGTAA
1 -CAGAATCAGAATCAGAATCAGTAACAGGTAA
* * *
51331481 CAGAATCAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGTAACAGGTAA
51331512 CAGAATCA
1 CAGAATCA
51331520 AAAATTAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
30 4 0.06
31 56 0.90
32 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGTAACAGGTAA
Found at i:51331486 original size:37 final size:37
Alignment explanation
Indices: 51331408--51331514 Score: 126
Period size: 37 Copynumber: 2.9 Consensus size: 37
51331398 TATCAGAACT
* * * *
51331408 AGAATCAGAATCAGAATCAGAATCAG-AATTATGTGAT
1 AGAATCAGAATCAGAATCAGAATCAGTAA-CAGGTAAC
51331445 AGAATCAGAATCAGAATCAGAATCAGTAACAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGTAACAGGTAAC
* * *
51331482 AGAATCAAAATCAAAATCAGTATCAGGTAACAG
1 AGAATCAGAATCAGAATCAGAATCA-GTAACAG
51331515 AATCAAAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
37 52 0.85
38 9 0.15
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGTAACAGGTAAC
Found at i:51331520 original size:31 final size:31
Alignment explanation
Indices: 51331450--51331522 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
51331440 GTGATAGAAT
* *
51331450 CAGAATCAGAATCAGAATCAGTAACAGGTAA
1 CAGAATCAAAATCAAAATCAGTAACAGGTAA
*
51331481 CAGAATCAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAAAATCAGTAACAGGTAA
51331512 CAGAATCAAAA
1 CAGAATCAAAA
51331523 ATTAGAATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.52, C:0.16, G:0.15, T:0.16
Consensus pattern (31 bp):
CAGAATCAAAATCAAAATCAGTAACAGGTAA
Found at i:51331697 original size:27 final size:26
Alignment explanation
Indices: 51331667--51331768 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
51331657 ACTCAGTTAT
* *
51331667 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
51331694 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
51331720 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
51331748 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
51331769 TTAACAAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:51332827 original size:27 final size:27
Alignment explanation
Indices: 51332435--51332819 Score: 463
Period size: 27 Copynumber: 14.3 Consensus size: 27
51332425 TACCTCACAA
* * *
51332435 GGTATCTCAGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
51332462 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
51332489 GGTATTTCGATAATTCTACCCTACATG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
51332516 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
51332543 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
51332570 GGTATTCCGGTAATTCTACCCTAAAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
51332597 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
51332624 GGTATTTTAGTAATGCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
51332651 GGTATTCCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
51332678 GCTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
51332705 GGTATTTCGGTAATT-T-CACAAATCAGG
1 GGTATTTCGGTAATTCTAC-CCTA-CAGG
* * **
51332732 GGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTCGGTAATTCTACCCTAC-AGG
* * **
51332759 GGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTCGGTAATTCTACCCTAC-AGG
* *
51332786 GGTATTTTGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
51332813 GGTATTT
1 GGTATTT
51332820 TAGTAATTTC
Statistics
Matches: 319, Mismatches: 33, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
25 1 0.00
26 4 0.01
27 310 0.97
28 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:51332840 original size:27 final size:26
Alignment explanation
Indices: 51332701--51332840 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 26
51332691 TTCTACCCTA
*
51332701 CAGGGGTATTTCGGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTCAC-AAT
* *
51332728 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTCACAAT
* *
51332754 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTCACAAT
*
51332781 CTAGGGGTATTTTGGTAA-TTCTATC-CT
1 C-AGGGGTATTTTGGTAATTTC-A-CAAT
*
51332808 ACAGGGGTATTTTAGTAATTTCACAAT
1 -CAGGGGTATTTTGGTAATTTCACAAT
51332835 CGAGGG
1 C-AGGG
51332841 TAAAATGGTA
Statistics
Matches: 98, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 7 0.07
27 86 0.88
28 5 0.05
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTCACAAT
Found at i:51332866 original size:27 final size:27
Alignment explanation
Indices: 51332832--51333042 Score: 237
Period size: 27 Copynumber: 7.8 Consensus size: 27
51332822 GTAATTTCAC
51332832 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
51332859 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * *
51332886 AATCGAAGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* ** *
51332913 AATCGAGGGTGAAACAGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
51332940 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
51332967 AATCGAGGGTAAAACT-TTAATTTGGTA
1 AATCGAGGGTAAAA-TGGTAATTTTGTA
* * * * *
51332994 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
51333021 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
51333043 CTACAAATCA
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 149 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:51332948 original size:81 final size:81
Alignment explanation
Indices: 51332832--51333055 Score: 301
Period size: 81 Copynumber: 2.8 Consensus size: 81
51332822 GTAATTTCAC
* * * * **
51332832 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAAGGT
1 AATCGAGGGTGAAACGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTCTACAAATCGAAGGT
51332896 AAAACGGTAATTCT-GTA
65 AAAACGGTAATT-TGGTA
* *
51332913 AATCGAGGGTGAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTA
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTA
**
51332978 AAACTTTAATTTGGTA
66 AAACGGTAATTTGGTA
* *
51332994 AATTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATC-AAGG
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGG
51333056 GCATTTCAGT
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 4 0.03
81 122 0.96
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTA
AAACGGTAATTTGGTA
Found at i:51334624 original size:17 final size:16
Alignment explanation
Indices: 51334602--51334633 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
51334592 GTATATACTA
51334602 AAAACTATAGTTAAACC
1 AAAACTATAG-TAAACC
51334619 AAAACTATAGTAAAC
1 AAAACTATAGTAAAC
51334634 TACTAGAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAACTATAGTAAACC
Found at i:51339555 original size:40 final size:40
Alignment explanation
Indices: 51339506--51339713 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
51339496 TCTTCGGAAT
* *
51339506 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
51339545 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
51339585 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
51339625 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
51339665 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
51339705 TTAGCCCGG
1 TTAGCCCGG
51339714 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:51347658 original size:40 final size:40
Alignment explanation
Indices: 51347610--51347816 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
51347600 TTCTTCGAAT
* *
51347610 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
51347649 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
51347689 TTAGCCCGGATATGACAACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
51347728 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
51347768 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
51347808 TTAGCCCGG
1 TTAGCCCGG
51347817 GTATCATTCA
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
39 38 0.27
40 101 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:51352431 original size:26 final size:26
Alignment explanation
Indices: 51352402--51352483 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
51352392 AGCTATCTTG
51352402 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * *
51352428 TACACAT-G-CGAC--CAATTA-TTC
1 TACACATAGTAGCCTGCACTTAGTAC
*
51352449 GGTACACGTAGTAGCCTGCACTTAGTAC
1 --TACACATAGTAGCCTGCACTTAGTAC
51352477 TACACAT
1 TACACAT
51352484 GTGACCTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
21 2 0.05
22 5 0.13
23 6 0.15
24 3 0.08
25 3 0.08
26 13 0.33
27 5 0.13
28 2 0.05
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:51352473 original size:49 final size:49
Alignment explanation
Indices: 51352401--51352632 Score: 241
Period size: 49 Copynumber: 4.7 Consensus size: 49
51352391 AAGCTATCTT
*
51352401 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTC-G
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGG
* ** *
51352450 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCGG
* * * * *
51352500 ATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGG
** * * * * **
51352551 GTATGCATAGTAGCCTGCACTTAGTACTACACATACAACCAATAATCCA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
* *
51352600 GTACATGTAGTAGCCTGCACTTAGTACCACACA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA
51352633 CATGACCGCA
Statistics
Matches: 150, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 72 0.48
50 44 0.29
51 34 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
Found at i:51357595 original size:50 final size:48
Alignment explanation
Indices: 51357478--51357709 Score: 268
Period size: 50 Copynumber: 4.7 Consensus size: 48
51357468 TCTGGAACGC
*
51357478 ATAGTAGCTTGCACTTAGTACTACACATGTGACCAATTATCCGGTACAT
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTAT-CGGTACAT
* * ** *
51357527 GTAGTAGCCTGTACTTAGTACTACACATGTGACCTAACCATCTGATACAT
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATC-GGTACAT
* *
51357577 ATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGTAC-T
1 ATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCGGTACAT
* * *
51357626 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCAGGTACAC
1 -ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATC-GGTACAT
* * *
51357676 GTAGTAGCCTGCACTTAGTACCACACACGTGACC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACC
51357710 TCACAATAGA
Statistics
Matches: 154, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
48 4 0.03
49 71 0.46
50 75 0.49
51 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCGGTACAT
Found at i:51357691 original size:99 final size:99
Alignment explanation
Indices: 51357477--51357709 Score: 301
Period size: 99 Copynumber: 2.4 Consensus size: 99
51357467 ATCTGGAACG
* * * *
51357477 CATAGTAGCTTGCACTTAGTACTACACATGTGACCAATTATCCGGTACATGTAGTAGCCTGTACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACATATAGTAGCCTGCACT
* * *
51357542 TAGTACTACACATGTGACCTAACCATCTGATACA
66 TAGTACTACACATGCGACCTAACAATCAGATACA
* *
51357576 TATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGGTAC-TCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACAT-ATAGTAGCCTGC
* *
51357639 ACTTAGTACTACACATGCGACC-AATAATCAGGTACA
63 ACTTAGTACTACACATGCGACCTAACAATCAGATACA
* *
51357675 CGTAGTAGCCTGCACTTAGTACCACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
51357710 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
98 1 0.01
99 71 0.61
100 40 0.34
101 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACATATAGTAGCCTGCACT
TAGTACTACACATGCGACCTAACAATCAGATACA
Found at i:51363894 original size:30 final size:30
Alignment explanation
Indices: 51363860--51363916 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
51363850 TCCTTGACTC
51363860 AAACTTTGGCAAAATTACAATTTTGCCTCT
1 AAACTTTGGCAAAATTACAATTTTGCCTCT
* * * *
51363890 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTGGCAAAATTACAATTTTGCC
51363917 CCTAGTCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCTCT
Found at i:51367559 original size:30 final size:30
Alignment explanation
Indices: 51367525--51367585 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51367515 TCCTTAACTC
51367525 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51367555 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51367585 A
1 A
51367586 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51376619 original size:40 final size:40
Alignment explanation
Indices: 51376546--51376753 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
51376536 CAATTGAATG
* * ** *
51376546 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
51376586 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
51376626 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
51376666 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
51376706 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
51376746 ATATCCGG
1 ATATCCGG
51376754 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:51376684 original size:80 final size:80
Alignment explanation
Indices: 51376548--51376753 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
51376538 ATTGAATGAT
* * ** * * * *
51376548 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
51376612 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
51376628 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
51376693 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
51376708 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51376754 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:51384734 original size:80 final size:80
Alignment explanation
Indices: 51384587--51384791 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
51384577 ATTGAATGAT
* * ** * * *
51384587 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATA-CCGGGTTAAGACCCGAAGGCCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
*
51384651 TGTGCTAGT-GACCAC
66 TGTGCAAGTCGACC-C
* * *
51384666 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGG-CAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCA-
** *
51384730 TTGTGCAAGTCGTTCT
65 TTGTGCAAGTCGACCC
* *
51384746 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51384792 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 35 0.33
80 69 0.65
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
TGTGCAAGTCGACCC
Found at i:51384789 original size:40 final size:40
Alignment explanation
Indices: 51384585--51384791 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
51384575 CAATTGAATG
* * ** **
51384585 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* ***
51384625 ATA-CCGGGTTAAGACCCGAAGGCCATT-GTGC-TAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAT-GTGGTT
* * *
51384664 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
51384704 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
51384744 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
51384784 ATATCCGG
1 ATATCCGG
51384792 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
39 30 0.22
40 108 0.78
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:51395347 original size:11 final size:11
Alignment explanation
Indices: 51395332--51395361 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
51395322 GAGTGAACTA
51395332 AGAGAATTAAG
1 AGAGAATTAAG
*
51395343 TGAGAATTAAG
1 AGAGAATTAAG
51395354 AGAGAATT
1 AGAGAATT
51395362 GAGAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (11 bp):
AGAGAATTAAG
Found at i:51396959 original size:9 final size:9
Alignment explanation
Indices: 51396946--51396996 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
51396936 TTAAATACAT
51396946 ATTTTTATA
1 ATTTTTATA
* *
51396955 CTTTTAAATA
1 ATTTT-TATA
51396965 ATTTTTATA
1 ATTTTTATA
*
51396974 ATTTTTTTGA
1 ATTTTTAT-A
51396984 ATTTTTA-A
1 ATTTTTATA
51396992 ATTTT
1 ATTTT
51396997 AAAAAGTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
8 6 0.18
9 14 0.41
10 14 0.41
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (9 bp):
ATTTTTATA
Found at i:51397151 original size:12 final size:13
Alignment explanation
Indices: 51397134--51397163 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51397124 ATTAAAAGAG
51397134 ATAAAAAA-TTAA
1 ATAAAAAATTTAA
51397146 ATAAAAAATTTAA
1 ATAAAAAATTTAA
51397159 ATAAA
1 ATAAA
51397164 TTTTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
ATAAAAAATTTAA
Found at i:51399730 original size:28 final size:29
Alignment explanation
Indices: 51399691--51399813 Score: 108
Period size: 29 Copynumber: 4.2 Consensus size: 29
51399681 AGTTATTTTG
*
51399691 CTATTTTGTTATTAAAATTAATTAATT-TTA
1 CTATTTTATTATTAAAATTAA-T-ATTATTA
*
51399721 -T-TTTTATTATTAATATTAATATTATTA
1 CTATTTTATTATTAAAATTAATATTATTA
** * *
51399748 CTATTTTATTATTATTATTATTATTACTA
1 CTATTTTATTATTAAAATTAATATTATTA
* ** *
51399777 TTATTATTATTATTATTATTATTATTATTA
1 CTATT-TTATTATTAAAATTAATATTATTA
51399807 CTATTTT
1 CTATTTT
51399814 TGTTATTATT
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
26 3 0.04
27 4 0.05
28 17 0.21
29 30 0.37
30 27 0.33
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (29 bp):
CTATTTTATTATTAAAATTAATATTATTA
Found at i:51399732 original size:3 final size:3
Alignment explanation
Indices: 51399718--51399863 Score: 170
Period size: 3 Copynumber: 49.3 Consensus size: 3
51399708 TTAATTAATT
* * * *
51399718 TTA TTT TTA TTA TTA ATA TTA ATA TTA TTA CTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
51399765 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
51399813 TTG TTA TTA TTA TTA TTA CTA TT- GTA TTA CTA TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51399860 TTA T
1 TTA T
51399864 ATTTTTTTTG
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
2 3 0.03
3 115 0.97
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:51400057 original size:3 final size:3
Alignment explanation
Indices: 51400051--51400103 Score: 61
Period size: 3 Copynumber: 17.7 Consensus size: 3
51400041 TTTGTATTTG
** * * *
51400051 TTA TTA TTA TTA TTA TTA TTA TTA TTA CCA TCA TCA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51400099 TTA TT
1 TTA TT
51400104 TTTAAATCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:51400260 original size:19 final size:19
Alignment explanation
Indices: 51400232--51400274 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51400222 ACCTTTTTTT
51400232 TAATTTA-T-TTTTA-TTA
1 TAATTTATTATTTTACTTA
51400248 TAATTTATTATTTTACTTA
1 TAATTTATTATTTTACTTA
*
51400267 TTATTTAT
1 TAATTTAT
51400275 CGATTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 5 0.22
19 10 0.43
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATTTATTATTTTACTTA
Found at i:51402901 original size:21 final size:21
Alignment explanation
Indices: 51402877--51402931 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
51402867 TCTGCTGCCA
* *
51402877 TCGCTGTTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTACCTCCC
*
51402898 TCGCTGCTGCCCCTACCTCCC
1 TCGCTGCTGCCTCTACCTCCC
51402919 TCGCTGCTGCCTC
1 TCGCTGCTGCCTC
51402932 CGCTCTAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.02, C:0.51, G:0.18, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCTCTACCTCCC
Found at i:51403367 original size:13 final size:14
Alignment explanation
Indices: 51403341--51403369 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51403331 ACTAACGACG
51403341 AATTAAACCATTAT
1 AATTAAACCATTAT
51403355 AATTAAA-CATTAT
1 AATTAAACCATTAT
51403368 AA
1 AA
51403370 ATATTTGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:51408437 original size:9 final size:9
Alignment explanation
Indices: 51408423--51408494 Score: 69
Period size: 9 Copynumber: 8.2 Consensus size: 9
51408413 TAAGTATAAT
51408423 TAAGTTATG
1 TAAGTTATG
51408432 TAAGTTATG
1 TAAGTTATG
* * *
51408441 ATATGATATA
1 -TAAGTTATG
*
51408451 T-ATTTATG
1 TAAGTTATG
51408459 T-A-TTATG
1 TAAGTTATG
51408466 TAAGTTATG
1 TAAGTTATG
*
51408475 TAAATTATG
1 TAAGTTATG
51408484 TAAGTTATG
1 TAAGTTATG
51408493 TA
1 TA
51408495 TTATGTATGA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 33 0.65
10 6 0.12
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51408465 original size:34 final size:34
Alignment explanation
Indices: 51408427--51408501 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
51408417 TATAATTAAG
* *
51408427 TTATGTAAGTTATG-ATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAATGATATA-AGTTATGTA
* *
51408461 TTATGTAAGTTATGTAAATTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAATGATATAAGTTATGTA
51408495 TTATGTA
1 TTATGTA
51408502 TGACATAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAATGATATAAGTTATGTA
Found at i:51408598 original size:9 final size:9
Alignment explanation
Indices: 51408584--51408751 Score: 127
Period size: 9 Copynumber: 18.7 Consensus size: 9
51408574 TGTGTTAATT
51408584 TTATGTAAA
1 TTATGTAAA
*
51408593 TTATGTAAG
1 TTATGTAAA
51408602 TTATG-AAA
1 TTATGTAAA
*
51408610 TTTGATCTTTAAA
1 -TT-A--TGTAAA
*
51408623 TTATGTAAG
1 TTATGTAAA
*
51408632 TCATGT--A
1 TTATGTAAA
*
51408639 TTATGTAAG
1 TTATGTAAA
51408648 TTATGT--A
1 TTATGTAAA
*
51408655 TTATGTAAG
1 TTATGTAAA
51408664 TTATGTAAA
1 TTATGTAAA
*
51408673 TTATGTAAG
1 TTATGTAAA
51408682 TTATG-AAA
1 TTATGTAAA
*
51408690 TTCGAACTTTAAA
1 TT---A-TGTAAA
*
51408703 TTATGTAAG
1 TTATGTAAA
51408712 TTATGT--A
1 TTATGTAAA
51408719 TTATGTAAA
1 TTATGTAAA
51408728 TTATGTAAA
1 TTATGTAAA
51408737 TTATGTAAA
1 TTATGTAAA
51408746 TTATGT
1 TTATGT
51408752 GAGTTGTTGG
Statistics
Matches: 125, Mismatches: 18, Indels: 32
0.71 0.10 0.18
Matches are distributed among these distances:
7 17 0.14
8 6 0.05
9 86 0.69
10 2 0.02
11 2 0.02
12 4 0.03
13 8 0.06
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (9 bp):
TTATGTAAA
Found at i:51408643 original size:16 final size:16
Alignment explanation
Indices: 51408622--51408751 Score: 122
Period size: 16 Copynumber: 8.0 Consensus size: 16
51408612 TGATCTTTAA
*
51408622 ATTATGTAAGTCATGT
1 ATTATGTAAGTTATGT
51408638 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
51408654 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
51408670 AAATTATGTAAGTTATGAA
1 --ATTATGTAAGTTATG-T
* * **
51408689 ATT-CG-AACTT-TAA
1 ATTATGTAAGTTATGT
51408702 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
51408718 ATTATGTAAATTATGT
1 ATTATGTAAGTTATGT
*
51408734 AAATTATGTAAATTATGT
1 --ATTATGTAAGTTATGT
51408752 GAGTTGTTGG
Statistics
Matches: 96, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
13 4 0.04
14 2 0.02
15 8 0.08
16 48 0.50
17 3 0.03
18 31 0.32
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.45
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:51408718 original size:80 final size:81
Alignment explanation
Indices: 51408584--51408751 Score: 275
Period size: 80 Copynumber: 2.1 Consensus size: 81
51408574 TGTGTTAATT
* * *
51408584 TTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAAGT
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGTAAAT
*
51408649 TATGT-ATTATGTAAG
66 TATGTAATTATGTAAA
*
51408664 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTTATGTATTATGTAAAT
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGTAAAT
51408729 TATGTAAATTATGTAAA
66 TATGT-AATTATGTAAA
51408746 TTATGT
1 TTATGT
51408752 GAGTTGTTGG
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 66 0.81
82 15 0.19
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (81 bp):
TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATGTAAGTCATGTATTATGTAAAT
TATGTAATTATGTAAA
Found at i:51408963 original size:98 final size:99
Alignment explanation
Indices: 51408861--51409199 Score: 580
Period size: 99 Copynumber: 3.5 Consensus size: 99
51408851 AATAAAATAG
*
51408861 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTATGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
51408926 ATTTAAATTA-TTTTCGTGATTCAAAAAAAATGA
66 ATTAAAATTAGTTTTCGTGATTCAAAAAAAATGA
51408959 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
* * *
51409024 ATTGAAATTATTTTTCGTGATTCAAACAAAATGA
66 ATTAAAATTAGTTTTCGTGATTCAAAAAAAATGA
51409058 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
51409123 ATTAAAATTAGTTTTCGTGATTC--AAAAAA--A
66 ATTAAAATTAGTTTTCGTGATTCAAAAAAAATGA
* *
51409153 AATATTTAAAATGAAACTTTAAATATAATTTAATTTAATTAGGTAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAAT
51409200 TTGATATACT
Statistics
Matches: 232, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
95 46 0.20
97 5 0.02
98 73 0.31
99 108 0.47
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (99 bp):
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
ATTAAAATTAGTTTTCGTGATTCAAAAAAAATGA
Found at i:51412516 original size:13 final size:13
Alignment explanation
Indices: 51412498--51412531 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
51412488 ACCCAAATAC
51412498 CCTAAACTTTAAA
1 CCTAAACTTTAAA
*
51412511 CCTAAATTTTAAA
1 CCTAAACTTTAAA
51412524 CTCTAAAC
1 C-CTAAAC
51412532 CCTAATTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (13 bp):
CCTAAACTTTAAA
Found at i:51412742 original size:21 final size:21
Alignment explanation
Indices: 51412713--51412752 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51412703 ACAAACAACA
*
51412713 AAATTTAAAA-AACTAAACCCC
1 AAATCTAAAATAAC-AAACCCC
51412734 AAATCTAAAATAACAAACC
1 AAATCTAAAATAACAAACC
51412753 ATAAACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCTAAAATAACAAACCCC
Found at i:51413246 original size:18 final size:18
Alignment explanation
Indices: 51413210--51413244 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
51413200 AAAGTTAGTT
51413210 TCAAATATCAAAATAAAA
1 TCAAATATCAAAATAAAA
51413228 TCAAAT-TCAAAATAAAA
1 TCAAATATCAAAATAAAA
51413245 ATAAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (18 bp):
TCAAATATCAAAATAAAA
Found at i:51413417 original size:41 final size:40
Alignment explanation
Indices: 51413384--51413496 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 40
51413374 CGTTTGTTAA
* *
51413384 AAAAACGTCGCTATTTCTCAGTTTTTAGCGGCGTTTGAACC
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTGAA-C
*
51413425 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTCGACC
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTT-GAAC
* *
51413466 AAAAATGCCGTTATTACTCAGTTTTTAGCGG
1 AAAAACGCCGCTATTACTCAGTTTTTAGCGG
51413497 TCGCTAATGC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 64 0.97
42 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (40 bp):
AAAAACGCCGCTATTACTCAGTTTTTAGCGGCGTTTGAAC
Found at i:51413649 original size:47 final size:47
Alignment explanation
Indices: 51413580--51413673 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
51413570 GTAGTGATAC
51413580 TTTGGTGTTTAGTTGGATACTTTTGTTTCCAAATGTACTTCTTGCAA
1 TTTGGTGTTTAGTTGGATACTTTTGTTTCCAAATGTACTTCTTGCAA
51413627 TTTGGTGTTTAGTTGGATACTTTTGTTTCCAAATGTACTTCTTGCAA
1 TTTGGTGTTTAGTTGGATACTTTTGTTTCCAAATGTACTTCTTGCAA
51413674 GTGTTAGTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.49
Consensus pattern (47 bp):
TTTGGTGTTTAGTTGGATACTTTTGTTTCCAAATGTACTTCTTGCAA
Found at i:51416958 original size:40 final size:40
Alignment explanation
Indices: 51416886--51417065 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
51416876 GCTCGATTGT
* * * *
51416886 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * * *
51416926 CTTTGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
51416966 CTTCGGGACTTAACCCGGTTTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
51417006 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
51417047 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
51417066 CACCATTCGA
Statistics
Matches: 112, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
40 83 0.74
41 28 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:51417000 original size:80 final size:80
Alignment explanation
Indices: 51416872--51417064 Score: 201
Period size: 80 Copynumber: 2.4 Consensus size: 80
51416862 AGATATAGCG
* * * * * * *
51416872 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTTGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGAATT
51416937 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
51416952 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTT-GCACAAATGCCTTCGGGAGT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAA-TTCGCACAAATGCCTTCGGGAAT
* *
51417016 TGACCCGGATTTAGTC
65 TGACCCGGATTTAATA
* * *
51417032 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
51417065 ACACCATTCG
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
80 64 0.69
81 29 0.31
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:51417785 original size:2 final size:2
Alignment explanation
Indices: 51417778--51417803 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51417768 ATGTGCAAAC
51417778 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
51417804 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51425016 original size:40 final size:39
Alignment explanation
Indices: 51424958--51425150 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
51424948 GGATATAGCG
* * * *
51424958 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
51424998 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
51425038 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
51425078 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
51425118 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
51425151 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:51425070 original size:80 final size:80
Alignment explanation
Indices: 51424958--51425150 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
51424948 GGATATAGCG
* * * * * * *
51424958 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
51425023 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
51425038 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
51425103 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
51425118 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
51425151 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:51425139 original size:41 final size:39
Alignment explanation
Indices: 51425000--51425151 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
51424990 TTATAGTGAT
* *
51425000 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
51425040 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
51425080 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
51425120 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
51425152 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:51429746 original size:46 final size:46
Alignment explanation
Indices: 51429679--51429850 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
51429669 CGTAACCCGC
* *
51429679 CCATAAGCAAACTCGGACTCAACT-AACGAGCTCGCGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG-GGCGTTCGCAT
* *
51429725 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
51429775 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
51429818 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
51429851 TGGATGCTCA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 48 0.46
47 37 0.35
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:51429816 original size:93 final size:93
Alignment explanation
Indices: 51429688--51429857 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51429678 CCCATAAGCA
* *
51429688 AACTCGGACTCAACTAACGAGCTCGCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTAACGAGCTCGCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
51429753 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
51429781 AACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACT-AACGAGCTCGCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
51429845 CGAGTTTGGATGC
65 CGAGTTCGGATGC
51429858 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 63 0.88
94 9 0.12
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTAACGAGCTCGCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:51429873 original size:46 final size:44
Alignment explanation
Indices: 51429730--51429873 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
51429720 CGCATCCATA
51429730 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
51429777 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
51429823 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
51429869 AGTGA
1 AGTGA
51429874 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:51431636 original size:47 final size:47
Alignment explanation
Indices: 51431584--51431780 Score: 358
Period size: 47 Copynumber: 4.1 Consensus size: 47
51431574 AGACATTCTA
51431584 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
1 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
51431631 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
1 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
*
51431678 CCTTATCACACATATATGCATGTTCACATTCATCACATTGGCCATTTGG
1 CCTTATCACAC--ATATGCATGTTCACATTCATCACATTGGCCATTCGG
*
51431727 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTAGG
1 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
51431774 CCTTATC
1 CCTTATC
51431781 TCATGTATAC
Statistics
Matches: 146, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 100 0.68
49 46 0.32
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
Found at i:51431640 original size:22 final size:22
Alignment explanation
Indices: 51431613--51431687 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
51431603 GTTCACATTC
51431613 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
51431635 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
51431659 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
51431682 ATCACA
1 ATCACA
51431688 CATATATGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:51431716 original size:96 final size:94
Alignment explanation
Indices: 51431584--51431780 Score: 358
Period size: 96 Copynumber: 2.1 Consensus size: 94
51431574 AGACATTCTA
51431584 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
1 CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
*
51431649 TGTTCACATTCATCACATTGGCCATTCGG
66 TGTTCACATTCATCACATTGGCCATTAGG
*
51431678 CCTTATCACACATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATATG
1 CCTTATCACAC--ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
51431743 CATGTTCACATTCATCACATTGGCCATTAGG
64 CATGTTCACATTCATCACATTGGCCATTAGG
51431774 CCTTATC
1 CCTTATC
51431781 TCATGTATAC
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
94 11 0.11
96 88 0.89
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
CCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
TGTTCACATTCATCACATTGGCCATTAGG
Found at i:51432487 original size:26 final size:26
Alignment explanation
Indices: 51432458--51432511 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
51432448 TTATCTTATA
51432458 TTCATTTTTGTACGATTTACAATGAT
1 TTCATTTTTGTACGATTTACAATGAT
51432484 TTCATTTTTGTACGATTTACAATGAT
1 TTCATTTTTGTACGATTTACAATGAT
51432510 TT
1 TT
51432512 TCCAAATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (26 bp):
TTCATTTTTGTACGATTTACAATGAT
Found at i:51435793 original size:27 final size:26
Alignment explanation
Indices: 51435741--51435799 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
51435731 CCACATATAT
*
51435741 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
51435767 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
51435794 ATATCT
1 ATATCT
51435800 AGCAGCCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:51437638 original size:53 final size:54
Alignment explanation
Indices: 51437444--51437643 Score: 188
Period size: 55 Copynumber: 3.7 Consensus size: 54
51437434 ATTAGGGTTT
* * * * * * *
51437444 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCACTGGTAAGTTCTACAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAACTTCTATAAGGC
* * * * *
51437498 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AACTTCTATAAGGC
* * * * *
51437553 AAAGATCCCATGTAAGACGATGCCAAGTCATGGCAATGTTGAA-TTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AACTTCTATAAGGC
** *
51437606 AAGGATACCATGTAAGACCATGTTAAGACATGGAAATG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATG
51437644 GTAAGTTAAA
Statistics
Matches: 116, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 38 0.33
54 35 0.30
55 43 0.37
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAACTTCTATAAGGC
Found at i:51451792 original size:68 final size:70
Alignment explanation
Indices: 51451720--51451917 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
51451710 ACACCCTGTA
* * * *
51451720 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
51451782 ATAAAT
65 ATAAAT
*
51451788 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
51451853 ATAAAT
65 ATAAAT
*
51451859 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
51451918 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:51451831 original size:41 final size:41
Alignment explanation
Indices: 51451786--51451903 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51451776 TGAAAGATAA
51451786 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51451827 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51451857 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51451898 ATGTAG
1 ATGTAG
51451904 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51451843 original size:71 final size:71
Alignment explanation
Indices: 51451754--51451917 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51451744 GAGATGTATC
51451754 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51451819 AGGACA
66 AGGACA
51451825 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51451890 AGGACA
66 AGGACA
51451896 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51451918 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51454132 original size:27 final size:27
Alignment explanation
Indices: 51454066--51454255 Score: 174
Period size: 27 Copynumber: 7.1 Consensus size: 27
51454056 GGTCGTTAAG
* * *
51454066 ACCCCCGACTTGTAAAATTACTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
*
51454093 A-CCCT-AGGTTGTAAAATTACTGAAAT
1 ACCCCTGA-TTTGTAAAATTACTGAAAT
* *
51454119 ACCCCTGATTTGTAAAATTATTGAAAC
1 ACCCCTGATTTGTAAAATTACTGAAAT
* * *
51454146 A-CCTTCGATTTGTGAAATTACCGAAAT
1 ACCCCT-GATTTGTAAAATTACTGAAAT
* * *
51454173 ACCTCTAACTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
*
51454200 ACCCCTGGTTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* * *
51454227 A-CCCT-ATAGTATAAAATTACCGAAAT
1 ACCCCTGAT-TTGTAAAATTACTGAAAT
51454253 ACC
1 ACC
51454256 TCTATGGGGT
Statistics
Matches: 131, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.02
26 44 0.34
27 82 0.63
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:51454214 original size:81 final size:80
Alignment explanation
Indices: 51454075--51454259 Score: 239
Period size: 81 Copynumber: 2.3 Consensus size: 80
51454065 GACCCCCGAC
** **
51454075 TTGTAAAATTACTAAAATACC-CTAGGTTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTA
1 TTGTAAAATTACCGAAATACCTCTAACTTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTA
*
51454139 TTGAAACACCTTCGAT-
66 CTGAAACACC--CGATA
* *
51454155 TTGTGAAATTACCGAAATACCTCTAACTTGTAAAATTACTGAAATACCCCTGGTTTGTAAAATTA
1 TTGTAAAATTACCGAAATACCTCTAACTTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTA
* *
51454220 CTGAAATACCCTATA
66 CTGAAACACCCGATA
* *
51454235 GTATAAAATTACCGAAATACCTCTA
1 TTGTAAAATTACCGAAATACCTCTA
51454260 TGGGGTAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 3 0.03
80 40 0.44
81 48 0.53
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCGAAATACCTCTAACTTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTA
CTGAAACACCCGATA
Found at i:51455910 original size:40 final size:40
Alignment explanation
Indices: 51455825--51456041 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
51455815 AAGCCAAGTA
* * * *
51455825 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* * *
51455863 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
51455903 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
51455943 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
51455983 CCTCCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
51456023 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51456042 TTATCATCCA
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 126 0.81
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:51464040 original size:40 final size:40
Alignment explanation
Indices: 51463958--51464174 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
51463948 AAGCCAAGTA
* * * *
51463958 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51463996 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51464036 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51464076 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * *
51464116 CCTTCGGGACTTAGCCTAGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51464156 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51464175 TTATCATCCA
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 130 0.82
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51466133 original size:22 final size:22
Alignment explanation
Indices: 51466076--51466135 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
51466066 TTAATCAGAT
51466076 TATGGCTTTGTGCCAACCTAAA
1 TATGGCTTTGTGCCAACCTAAA
* * * * * * *
51466098 AATGGCTCTATGCCATCTTGAC
1 TATGGCTTTGTGCCAACCTAAA
51466120 TATGGCTTTGTGCCAA
1 TATGGCTTTGTGCCAA
51466136 ACGTATTTAC
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (22 bp):
TATGGCTTTGTGCCAACCTAAA
Found at i:51466525 original size:32 final size:32
Alignment explanation
Indices: 51466489--51466557 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
51466479 GTTTATGAGA
*
51466489 TCTGTCACT-GTATTGGGCTTAGGCCCAGTTG-T
1 TCTGTCACTGGT-TTGGGC-TAGGCCCAATTGAT
* *
51466521 TCTGTTATTGGTTTGGGCTAGGCCCAATTGAT
1 TCTGTCACTGGTTTGGGCTAGGCCCAATTGAT
51466553 TCTGT
1 TCTGT
51466558 TATGGGCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 11 0.34
32 19 0.59
33 2 0.06
ACGTcount: A:0.13, C:0.19, G:0.28, T:0.41
Consensus pattern (32 bp):
TCTGTCACTGGTTTGGGCTAGGCCCAATTGAT
Found at i:51467286 original size:47 final size:48
Alignment explanation
Indices: 51467214--51467437 Score: 149
Period size: 47 Copynumber: 4.7 Consensus size: 48
51467204 ACGGTGTTAC
* *
51467214 AGCTAGTGTAAG-TCATGTTTGGGACATGCATCGGCCAC-ATTATG-AG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCACAATTATGTAG
* * * ** * *
51467260 AGCTAGTGTAAGACCATGTCTGGGACATGGTAACGTCATTGA-GACG-AG
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGCCA-CAATTATGTAG
* * * * *
51467308 TGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGA-GACGTA-
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCACAATTATGTAG
* * * * *
51467354 AGCCAGTGTAAGACCATGTTTGGGACATTCCATCGACACAAATATGCTAG
1 AGCTAGTGTAAGACCATGTCTGGGACA-TGCATCGCCACAATTATG-TAG
*
51467404 AGCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
51467438 AACATCTGCA
Statistics
Matches: 139, Mismatches: 27, Indels: 20
0.75 0.15 0.11
Matches are distributed among these distances:
46 32 0.23
47 49 0.35
48 26 0.19
49 4 0.03
50 28 0.20
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCACAATTATGTAG
Found at i:51467366 original size:46 final size:47
Alignment explanation
Indices: 51467214--51467381 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
51467204 ACGGTGTTAC
* * * * *
51467214 AGCTAGTGTAAG-TCATGTTTGGGACATGCATCGGCCAC-ATTATGAG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GACGAG
* * * * *
51467260 AGCTAGTGTAAGACCATGTCTGGGACATGGTAACGTCATTGAGACGAG
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAG
*
51467308 TGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTA-
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG-AG
* *
51467354 AGCCAGTGTAAGACCATGTTTGGGACAT
1 AGCTAGTGTAAGACCATGTCTGGGACAT
51467382 TCCATCGACA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
46 35 0.36
47 41 0.42
48 21 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAG
Found at i:51471241 original size:47 final size:46
Alignment explanation
Indices: 51471123--51471296 Score: 189
Period size: 45 Copynumber: 3.8 Consensus size: 46
51471113 TAGGATGGTT
*
51471123 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
51471170 TG--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
*
51471215 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCG-A
* *
51471263 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
51471297 TATGGGCGGG
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.04
44 2 0.02
45 32 0.30
46 30 0.28
47 31 0.29
48 5 0.05
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:51471292 original size:46 final size:46
Alignment explanation
Indices: 51471128--51471301 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
51471118 TGGTTGGCAT
* *
51471128 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
51471173 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
51471218 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
51471266 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51471302 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
44 2 0.02
45 29 0.26
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:51474276 original size:15 final size:15
Alignment explanation
Indices: 51474256--51474324 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
51474246 GTATCTTGGG
51474256 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
51474271 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
51474286 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
51474301 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
51474316 TTTCTTTAT
1 TTTCTTTAT
51474325 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:51474325 original size:30 final size:30
Alignment explanation
Indices: 51474247--51474334 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
51474237 CATAGTATCG
* * * *
51474247 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
51474277 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
51474307 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
51474335 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:51476767 original size:46 final size:46
Alignment explanation
Indices: 51476717--51476892 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51476707 TGGTTGAGCA
51476717 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51476763 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51476808 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51476856 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51476893 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51476873 original size:93 final size:93
Alignment explanation
Indices: 51476714--51476884 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51476704 GGATGGTTGA
* *
51476714 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51476779 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51476807 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51476872 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51476885 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51484438 original size:15 final size:15
Alignment explanation
Indices: 51484420--51484449 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51484410 GAAAAATTAG
51484420 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAGA
*
51484435 AAAGAAAGAAAAAGA
1 AAAGAAAAAAAAAGA
51484450 GTGTGAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:51485244 original size:12 final size:12
Alignment explanation
Indices: 51485217--51485253 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
51485207 GATTCTGTAA
51485217 GACCATGTCT--
1 GACCATGTCTGG
51485227 GACCATGTCTGG
1 GACCATGTCTGG
51485239 GACCATGTCTGG
1 GACCATGTCTGG
51485251 GAC
1 GAC
51485254 ATGGCATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.40
12 15 0.60
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (12 bp):
GACCATGTCTGG
Found at i:51491584 original size:13 final size:13
Alignment explanation
Indices: 51491566--51491590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51491556 CTTTGCTAAA
51491566 TGAATTATGCTTG
1 TGAATTATGCTTG
51491579 TGAATTATGCTT
1 TGAATTATGCTT
51491591 AGTACAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGAATTATGCTTG
Found at i:51493256 original size:40 final size:39
Alignment explanation
Indices: 51493145--51493295 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
51493135 TTAATCACGT
* * *
51493145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
51493185 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
51493225 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
51493265 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
51493296 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:51493279 original size:80 final size:79
Alignment explanation
Indices: 51493145--51493295 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51493135 TTAATCACGT
*
51493145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
51493210 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51493225 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
51493288 CCGGATAT
64 CCGGATAT
51493296 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51494144 original size:17 final size:19
Alignment explanation
Indices: 51494121--51494166 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51494111 AAGAAGCATG
51494121 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51494139 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51494157 AATCATGCTC
1 AATCATGCTC
51494167 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51501174 original size:40 final size:40
Alignment explanation
Indices: 51501129--51501295 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
51501119 CGGAATATAA
51501129 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51501169 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51501209 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51501249 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51501288 CCGGATAT
1 CCGGATAT
51501296 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51501279 original size:80 final size:79
Alignment explanation
Indices: 51501145--51501295 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51501135 ATAATCACGT
*
51501145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
51501210 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51501225 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
51501288 CCGGATAT
64 CCGGATAT
51501296 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51502144 original size:17 final size:19
Alignment explanation
Indices: 51502121--51502166 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51502111 AAGAAGCATG
51502121 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51502139 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51502157 AATCATGCTC
1 AATCATGCTC
51502167 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51504448 original size:29 final size:28
Alignment explanation
Indices: 51504416--51504518 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
51504406 GTGACGAGAT
* *
51504416 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
51504445 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
51504474 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
51504503 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51504519 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:51506176 original size:79 final size:82
Alignment explanation
Indices: 51506036--51506220 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51506026 TCGAATGATG
* * *
51506036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
51506100 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
51506116 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
51506178 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
51506196 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51506221 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:51506228 original size:40 final size:40
Alignment explanation
Indices: 51506037--51506228 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
51506027 CGAATGATGT
* * * * *
51506037 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
51506077 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
51506117 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
51506156 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
51506196 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
51506229 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:51506251 original size:79 final size:79
Alignment explanation
Indices: 51506036--51506253 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
51506026 TCGAATGATG
* * * * ** *
51506036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
51506099 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
51506116 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
51506181 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
51506196 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
51506254 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:51514815 original size:40 final size:40
Alignment explanation
Indices: 51514687--51514838 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
51514677 TATAACACGT
* * *
51514687 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
51514727 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
51514767 GCGCAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51514807 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
51514839 CATTCAATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:51520368 original size:123 final size:123
Alignment explanation
Indices: 51520148--51520369 Score: 311
Period size: 123 Copynumber: 1.8 Consensus size: 123
51520138 GAATTATGTG
** * * * *
51520148 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
* * **
51520213 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* *
51520271 AAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGG
1 AAATGAAATATGGATGTCCAATGATTATTGAT-TATGTGTGCATGAGAAATTGAATGATACCCGG
*
51520336 GCTAAG-CCCGAAGACAATTATGCTGGAAATTATA
65 GCTAAGTCCCGAAGACAATTATGCTAGAAATTATA
51520370 TCCGGGTTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 51 0.60
124 34 0.40
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:51520394 original size:40 final size:40
Alignment explanation
Indices: 51520328--51520478 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
51520318 AAATTGAATG
* * *
51520328 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51520367 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
51520407 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
51520447 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
51520479 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51520492 original size:40 final size:40
Alignment explanation
Indices: 51520365--51520494 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51520355 ATGCTGGAAA
* * *
51520365 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
51520405 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51520445 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51520485 TTATATCCGG
1 TTATATCCGG
51520495 TTATTCCGAA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51528351 original size:40 final size:40
Alignment explanation
Indices: 51528285--51528435 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
51528275 AAATTGAATG
* * *
51528285 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51528324 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
51528364 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
51528404 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
51528436 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51528449 original size:40 final size:40
Alignment explanation
Indices: 51528322--51528451 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51528312 ATGCTGGAAA
* * *
51528322 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
51528362 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51528402 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51528442 TTATATCCGG
1 TTATATCCGG
51528452 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51531389 original size:40 final size:39
Alignment explanation
Indices: 51531334--51531414 Score: 144
Period size: 40 Copynumber: 2.1 Consensus size: 39
51531324 GTTCCGAAAA
*
51531334 AAGTATATCAGTCAGAGATTCATCGACCAAAAGCGAAGGG
1 AAGTATACCAGTCAGAGATTCATCGACC-AAAGCGAAGGG
51531374 AAGTATACCAGTCAGAGATTCATCGACCAAAGCGAAGGG
1 AAGTATACCAGTCAGAGATTCATCGACCAAAGCGAAGGG
51531413 AA
1 AA
51531415 TTCCTGACCT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 13 0.32
40 27 0.68
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.16
Consensus pattern (39 bp):
AAGTATACCAGTCAGAGATTCATCGACCAAAGCGAAGGG
Found at i:51536885 original size:40 final size:40
Alignment explanation
Indices: 51536783--51536966 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
51536773 AAATTGAATG
* * * * * *
51536783 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
51536823 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
51536863 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
51536903 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
51536943 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51536967 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:51536991 original size:80 final size:80
Alignment explanation
Indices: 51536823--51537011 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
51536813 GCTGGAAATT
* * *
51536823 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
51536888 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
51536903 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
51536966 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
51536983 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51537012 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:51541133 original size:24 final size:24
Alignment explanation
Indices: 51541082--51541270 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
51541072 GCTTTATCAT
*
51541082 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
51541107 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
51541131 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51541154 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51541177 ATAACTGGGGCATGAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
51541201 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
51541225 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51541248 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51541271 GCACTTCCTC
Statistics
Matches: 152, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
23 66 0.43
24 74 0.49
25 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51541157 original size:23 final size:23
Alignment explanation
Indices: 51541103--51541269 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
51541093 CCTAGCCTCT
*
51541103 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
51541126 TTTTAATAACTGGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51541150 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
51541173 TTTAATAACTGGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
51541196 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
51541220 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51541244 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
51541267 TTT
1 TTT
51541270 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 69 0.51
24 66 0.49
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:51541271 original size:47 final size:47
Alignment explanation
Indices: 51541103--51541270 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
51541093 CCTAGCCTCT
*
51541103 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATGAGCCC
51541150 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATGAGCCC
* * *
51541196 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATGAGCCC
51541244 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
51541271 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 23 0.20
47 70 0.61
48 21 0.18
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATGAGCCC
Found at i:51541342 original size:9 final size:9
Alignment explanation
Indices: 51541328--51541384 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51541318 ATCTCATGTG
51541328 CATATCATA
1 CATATCATA
*
51541337 CATATCATGTG
1 CATATCA--TA
51541348 CATATCATA
1 CATATCATA
* *
51541357 CATGTCATGTG
1 CATATCA--TA
51541368 CATATCATA
1 CATATCATA
51541377 CATATCAT
1 CATATCAT
51541385 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51541344 original size:20 final size:20
Alignment explanation
Indices: 51541316--51541386 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
51541306 GCATTTATGA
*
51541316 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51541336 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51541356 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51541376 ACATATCATGT
1 ACATATCATGT
51541387 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51541351 original size:11 final size:11
Alignment explanation
Indices: 51541321--51541375 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51541311 TATGAACATC
51541321 TCATGTGCATA
1 TCATGTGCATA
*
51541332 TCA--TACATA
1 TCATGTGCATA
51541341 TCATGTGCATA
1 TCATGTGCATA
* *
51541352 TCA--TACATG
1 TCATGTGCATA
51541361 TCATGTGCATA
1 TCATGTGCATA
51541372 TCAT
1 TCAT
51541376 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Done.