Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 184 of 444
Found at i:51542704 original size:27 final size:27
Alignment explanation
Indices: 51542684--51543025 Score: 376
Period size: 27 Copynumber: 12.7 Consensus size: 27
51542674 AGGGTATTTT
*
51542684 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
51542711 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51542738 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
51542765 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
51542792 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
51542819 GGTAATT-TATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51542845 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
51542872 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
51542899 -GATAATTATGTAAATC-AGGGGTAAAAT
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
51542926 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
51542953 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51542980 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
51543007 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
51543026 AGTACTTTGG
Statistics
Matches: 274, Mismatches: 27, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
26 25 0.09
27 244 0.89
28 5 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:51544804 original size:19 final size:19
Alignment explanation
Indices: 51544780--51544864 Score: 73
Period size: 14 Copynumber: 5.0 Consensus size: 19
51544770 TCTTTGCACC
51544780 ATTAAAATTTCCTCTATTT
1 ATTAAAATTTCCTCTATTT
*
51544799 ATTAAAA--T--T-TATTC
1 ATTAAAATTTCCTCTATTT
51544813 ATTAAAATTTCCTCTATTT
1 ATTAAAATTTCCTCTATTT
* *
51544832 ATTATAA--T--T-TATTC
1 ATTAAAATTTCCTCTATTT
51544846 ATTAAAATTTCCTCTATTT
1 ATTAAAATTTCCTCTATTT
51544865 CACATTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 20
0.66 0.08 0.26
Matches are distributed among these distances:
14 21 0.42
15 2 0.04
16 2 0.04
17 2 0.04
18 2 0.04
19 21 0.42
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAAAATTTCCTCTATTT
Found at i:51544821 original size:33 final size:33
Alignment explanation
Indices: 51544779--51544864 Score: 163
Period size: 33 Copynumber: 2.6 Consensus size: 33
51544769 ATCTTTGCAC
51544779 CATTAAAATTTCCTCTATTTATTAAAATTTATT
1 CATTAAAATTTCCTCTATTTATTAAAATTTATT
*
51544812 CATTAAAATTTCCTCTATTTATTATAATTTATT
1 CATTAAAATTTCCTCTATTTATTAAAATTTATT
51544845 CATTAAAATTTCCTCTATTT
1 CATTAAAATTTCCTCTATTT
51544865 CACATTTTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (33 bp):
CATTAAAATTTCCTCTATTTATTAAAATTTATT
Found at i:51564128 original size:13 final size:13
Alignment explanation
Indices: 51564110--51564138 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
51564100 TTTAGTTTAA
51564110 TTAGTTAATTAGT
1 TTAGTTAATTAGT
51564123 TTAGTTAATTAGT
1 TTAGTTAATTAGT
51564136 TTA
1 TTA
51564139 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:51566075 original size:39 final size:40
Alignment explanation
Indices: 51566031--51566236 Score: 289
Period size: 39 Copynumber: 5.2 Consensus size: 40
51566021 CCTTCGGAGT
* *
51566031 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
51566070 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
51566110 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
51566149 TTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
* *
51566188 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
51566228 TTAGCCCGG
1 TTAGCCCGG
51566237 TATCAATCCG
Statistics
Matches: 157, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 78 0.50
40 78 0.50
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:51566098 original size:40 final size:41
Alignment explanation
Indices: 51566054--51566238 Score: 292
Period size: 39 Copynumber: 4.7 Consensus size: 41
51566044 GCTACTAGCT
*
51566054 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
*
51566094 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
51566134 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
* *
51566173 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
51566212 CAAATGCCTTCGGGACTTAGCCCGGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTA
51566239 TCAATCCGAA
Statistics
Matches: 139, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
38 1 0.01
39 73 0.53
40 64 0.46
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
Found at i:51566153 original size:79 final size:80
Alignment explanation
Indices: 51566047--51566238 Score: 293
Period size: 79 Copynumber: 2.4 Consensus size: 80
51566037 GGATATAGCT
* *
51566047 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGG-CT
*
51566111 TAGCCCGG-TTATAGTA
65 TAGCCCGGAAT-TAGTA
*
51566127 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCACAAATGCCTTCGGGCTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGGCTT
*
51566190 AGCCCGGAATTAGTC
66 AGCCCGGAATTAGTA
51566205 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
51566239 TCAATCCGAA
Statistics
Matches: 102, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
78 35 0.34
79 47 0.46
80 20 0.20
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGGCTT
AGCCCGGAATTAGTA
Found at i:51566291 original size:18 final size:19
Alignment explanation
Indices: 51566250--51566285 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51566240 CAATCCGAAT
*
51566250 ATCATGCACATATCAATAA
1 ATCATGCACACATCAATAA
51566269 ATCATG-ACACATCAATA
1 ATCATGCACACATCAATA
51566286 TTTCATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (19 bp):
ATCATGCACACATCAATAA
Found at i:51574377 original size:39 final size:40
Alignment explanation
Indices: 51574238--51574443 Score: 244
Period size: 39 Copynumber: 5.2 Consensus size: 40
51574228 CCTTCGGAGT
*
51574238 TTAG-CCGGATATAGCT-ACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * * *
51574277 TTAGCTCGGTTATAATAACTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
51574317 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
51574356 TTAGCCCGGA-ATTAGTCACTCGTAGAAATGCCTTCGGG-C
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
* *
51574395 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
51574435 TTAGCCCGG
1 TTAGCCCGG
51574444 GTATCAATCC
Statistics
Matches: 148, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 74 0.50
40 73 0.49
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:51582985 original size:13 final size:13
Alignment explanation
Indices: 51582967--51582995 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
51582957 TTTAGTTTAA
51582967 TTAGTTAATTAGT
1 TTAGTTAATTAGT
51582980 TTAGTTAATTAGT
1 TTAGTTAATTAGT
51582993 TTA
1 TTA
51582996 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:51583273 original size:46 final size:46
Alignment explanation
Indices: 51583205--51583312 Score: 171
Period size: 46 Copynumber: 2.3 Consensus size: 46
51583195 CGATCAACAT
* *
51583205 GTCTGAGACATGCATCGTCCTCGAGACGTAAGCCAGTGTAAGACAC
1 GTCTGGGACATGCATCGACCTCGAGACGTAAGCCAGTGTAAGACAC
* * *
51583251 GTCTGGGACATGCATCGACCTCGAGACGTACGCTAGTGTAAGACAT
1 GTCTGGGACATGCATCGACCTCGAGACGTAAGCCAGTGTAAGACAC
51583297 GTCTGGGACATGCATC
1 GTCTGGGACATGCATC
51583313 AGCTACAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (46 bp):
GTCTGGGACATGCATCGACCTCGAGACGTAAGCCAGTGTAAGACAC
Found at i:51583391 original size:44 final size:47
Alignment explanation
Indices: 51583234--51583404 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 47
51583224 CTCGAGACGT
* * * *
51583234 AAGCCAGTGTAAGA-CACGTCTGGGACAT-GCATCGACCT-CGAGACG
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTACAAGATG
* * *
51583279 TACGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACAAGATG
1 -AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACAAGATG
* * * *
51583325 ATAGTCAATGTAAGACCATGTCTGGGACATGGCATCAACT-TATG-TG
1 A-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACAAGATG
51583371 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
51583405 GGCACCTTAC
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
44 32 0.30
45 4 0.04
46 46 0.43
47 16 0.15
48 8 0.08
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTACAAGATG
Found at i:51585070 original size:49 final size:49
Alignment explanation
Indices: 51584988--51585175 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
51584978 TGAGGTCACG
* * *
51584988 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * * *
51585037 TGCGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA--TTGGTCGCA
* *
51585088 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
*
51585137 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
51585176 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 77 0.64
51 43 0.36
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:51585156 original size:100 final size:100
Alignment explanation
Indices: 51584983--51585175 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
51584973 TATTGTGAGG
*
51584983 TCACGTGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
* *
51585048 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACTATGCATACCAGATAACTTTGA
* * *
51585083 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
51585148 AAGTGCAGGCTACTATGCATACCAGATA
66 AAGTGCAGGCTACTATGCATACCAGATA
51585176 GCTTCGGCTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACTTTGA
Found at i:51587508 original size:21 final size:20
Alignment explanation
Indices: 51587484--51587522 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
51587474 TCGCGTTGGT
*
51587484 CACACGGGCGTGTTGCCCTTC
1 CACACAGGCGTG-TGCCCTTC
51587505 CACACAGGCGTGTGCCCT
1 CACACAGGCGTGTGCCCT
51587523 GTTTTGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (20 bp):
CACACAGGCGTGTGCCCTTC
Found at i:51587910 original size:83 final size:82
Alignment explanation
Indices: 51587772--51587931 Score: 293
Period size: 83 Copynumber: 1.9 Consensus size: 82
51587762 GTATTAGAGC
51587772 TATGGTTTAGTCAGTTCTAGGACTACCTAGCGAGAGTACGAGTCTAGCTATACATACCATAACTA
1 TATGGTTTAGTCAGTTCTAGGACTACCTAGCGAGAGTACGAGTCTAGCTATACATACCATAACTA
51587837 TATATTAATAGCCTAGG
66 TATATTAATAGCCTAGG
*
51587854 TATGGTTTAGTCAGTTCTAGGACTAGCTTAGCGAGAGTACGAGTCTAGCTATACATACCATAACT
1 TATGGTTTAGTCAGTTCTAGGACTA-CCTAGCGAGAGTACGAGTCTAGCTATACATACCATAACT
*
51587919 ATATATTGATAGC
65 ATATATTAATAGC
51587932 GTGACGATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
82 25 0.33
83 50 0.67
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (82 bp):
TATGGTTTAGTCAGTTCTAGGACTACCTAGCGAGAGTACGAGTCTAGCTATACATACCATAACTA
TATATTAATAGCCTAGG
Found at i:51589585 original size:71 final size:71
Alignment explanation
Indices: 51589469--51589632 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
51589459 CGATTTGTCT
51589469 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGAGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGAGACCTAGCTACATTTAT
51589534 CTTTCA
66 CTTTCA
*
51589540 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGAGACCTAGCTACATTTAT
51589605 CTTTCA
66 CTTTCA
51589611 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51589633 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGAGACCTAGCTACATTTAT
CTTTCA
Found at i:51589670 original size:71 final size:70
Alignment explanation
Indices: 51589469--51589666 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
51589459 CGATTTGTCT
* * * * *
51589469 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGAGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51589534 CTTTCA
65 CTTTCA
* * * *
51589540 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51589605 CTTTCA
65 CTTTCA
* *
51589611 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51589667 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51591886 original size:21 final size:21
Alignment explanation
Indices: 51591848--51591887 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51591838 ATTACTCCGA
*
51591848 AGAAGCCGATTGATTCATCTC
1 AGAAGCCGATTCATTCATCTC
51591869 AGAAGCCAGATTCA-TCATC
1 AGAAGCC-GATTCATTCATC
51591888 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (21 bp):
AGAAGCCGATTCATTCATCTC
Found at i:51605069 original size:41 final size:41
Alignment explanation
Indices: 51605024--51605141 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51605014 TGAAAGATAA
51605024 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51605065 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51605095 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51605136 ATGTAG
1 ATGTAG
51605142 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51605080 original size:71 final size:71
Alignment explanation
Indices: 51604992--51605155 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51604982 GAGATGTATC
51604992 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51605057 AGGACA
66 AGGACA
51605063 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51605128 AGGACA
66 AGGACA
51605134 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51605156 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51612828 original size:47 final size:47
Alignment explanation
Indices: 51612799--51612994 Score: 349
Period size: 47 Copynumber: 4.1 Consensus size: 47
51612789 GTATACATGA
*
51612799 GATAAGGCCTAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
51612846 GATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC--ATATGTGT
51612895 GATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
51612941 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
51612988 GATAAGG
1 GATAAGG
51612995 TAGAATGTCT
Statistics
Matches: 144, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
46 15 0.10
47 84 0.58
48 30 0.21
49 15 0.10
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:51612908 original size:95 final size:94
Alignment explanation
Indices: 51612799--51612994 Score: 349
Period size: 95 Copynumber: 2.1 Consensus size: 94
51612789 GTATACATGA
*
51612799 GATAAGGCCTAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCAAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCAAATGGCCA
51612864 ATGTGATGAATGTGAACATGCATATATGTGT
66 ATGTGATGAATGTGAACATGC--ATATGTGT
*
51612895 GATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCAAATGGCCA
51612959 ATGTGATGAATGTGAACATGCATATGTGT
66 ATGTGATGAATGTGAACATGCATATGTGT
51612988 GATAAGG
1 GATAAGG
51612995 TAGAATGTCT
Statistics
Matches: 98, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
93 15 0.15
95 76 0.78
96 7 0.07
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCAAATGGCCA
ATGTGATGAATGTGAACATGCATATGTGT
Found at i:51614773 original size:46 final size:46
Alignment explanation
Indices: 51614723--51614898 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51614713 TGGTTGAGCA
51614723 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51614769 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51614814 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51614862 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51614899 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51614879 original size:93 final size:93
Alignment explanation
Indices: 51614720--51614891 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51614710 GGATGGTTGA
* *
51614720 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51614785 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51614813 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51614878 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51614892 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51622314 original size:46 final size:46
Alignment explanation
Indices: 51622264--51622439 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51622254 TGGTTGAGCA
51622264 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51622310 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51622355 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51622403 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51622440 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51622420 original size:93 final size:93
Alignment explanation
Indices: 51622261--51622432 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51622251 GGATGGTTGA
* *
51622261 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51622326 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51622354 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51622419 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51622433 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51624467 original size:8 final size:8
Alignment explanation
Indices: 51624454--51624480 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
51624444 TATACATGCC
51624454 ATAAAGTG
1 ATAAAGTG
51624462 ATAAAGTG
1 ATAAAGTG
51624470 ATAAAGTG
1 ATAAAGTG
51624478 ATA
1 ATA
51624481 GTGTGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (8 bp):
ATAAAGTG
Found at i:51624900 original size:40 final size:40
Alignment explanation
Indices: 51624847--51625242 Score: 540
Period size: 40 Copynumber: 9.9 Consensus size: 40
51624837 TTGAGAGTTA
* *
51624847 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
51624887 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
51624927 TATATCCGGGCTAAGTCCTGAAGAGCATTGGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
51624967 TATATCCGGGCTAAGTCCCGAAGAGCATTGGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
51625007 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
51625047 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * * *
51625087 TATATCCGGGCTAAGTCTCGGAGAGCATTTGTACTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
51625127 TATATCAGGGTTAAGTCCTGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * * *
51625167 TATATCTGGGCTAAGTCTCGGAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
51625207 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
51625243 TCCGGGCTAG
Statistics
Matches: 313, Mismatches: 43, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 313 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:51643588 original size:34 final size:33
Alignment explanation
Indices: 51643550--51643621 Score: 110
Period size: 34 Copynumber: 2.2 Consensus size: 33
51643540 TGAGTGGCAA
51643550 TATCAGTGTGGGCCCTAGCCC-ATTACAGTACTAG
1 TATCAGTGTGGGCCCTAGCCCAATT-CAGTA-TAG
*
51643584 TATCAGTGTGGGCCTTAGCCCAATTCAGTATAG
1 TATCAGTGTGGGCCCTAGCCCAATTCAGTATAG
51643617 TATCA
1 TATCA
51643622 AAGATGCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 8 0.22
34 25 0.69
35 3 0.08
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (33 bp):
TATCAGTGTGGGCCCTAGCCCAATTCAGTATAG
Found at i:51645640 original size:17 final size:18
Alignment explanation
Indices: 51645598--51645646 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
51645588 AGTTGAAAAG
51645598 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
51645617 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
51645634 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
51645647 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:51646591 original size:39 final size:40
Alignment explanation
Indices: 51646468--51646633 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
51646458 AAATTGAATG
* * *
51646468 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
51646507 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
51646547 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
51646586 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
51646626 ATATCCGG
1 ATATCCGG
51646634 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:51646600 original size:79 final size:79
Alignment explanation
Indices: 51646468--51646617 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
51646458 AAATTGAATG
*
51646468 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
51646533 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
51646547 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
51646610 ATTTGTGC
64 AATTGTGC
51646618 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:51653628 original size:17 final size:18
Alignment explanation
Indices: 51653586--51653634 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
51653576 AGTTGAAAAG
51653586 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
51653605 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
51653622 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
51653635 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:51654521 original size:40 final size:40
Alignment explanation
Indices: 51654455--51654621 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51654445 AAATTGAATG
* * *
51654455 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
51654494 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
51654534 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51654574 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51654614 ATATCCGG
1 ATATCCGG
51654622 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51661630 original size:17 final size:18
Alignment explanation
Indices: 51661588--51661636 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
51661578 AGTTGAAAAG
51661588 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
51661607 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
51661624 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
51661637 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:51662524 original size:40 final size:40
Alignment explanation
Indices: 51662458--51662624 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51662448 AAATTGAATG
* * *
51662458 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
51662497 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
51662537 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51662577 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51662617 ATATCCGG
1 ATATCCGG
51662625 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51669391 original size:53 final size:53
Alignment explanation
Indices: 51669217--51669420 Score: 167
Period size: 53 Copynumber: 3.8 Consensus size: 53
51669207 AGGGTTTAAG
* * * * *
51669217 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-TTACAAGATAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATA-AGGA-AAA
* * * * * * * * * *
51669271 AAAATCATGCAAGACCATGTCAAGATATGGCATTGATAAACTACTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGAAAA
* * * * *
51669326 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
* *
51669379 GATACCATGTAAGACCATGTCAAGACGTGGCAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
51669421 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 33, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
53 45 0.39
54 31 0.27
55 33 0.29
56 3 0.03
57 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
Found at i:51672929 original size:7 final size:7
Alignment explanation
Indices: 51672917--51672941 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51672907 GTATTCTTCT
51672917 TGTTTGA
1 TGTTTGA
51672924 TGTTTGA
1 TGTTTGA
51672931 TGTTTGA
1 TGTTTGA
51672938 TGTT
1 TGTT
51672942 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:51673866 original size:27 final size:28
Alignment explanation
Indices: 51673810--51673879 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51673800 AAATTTGTAC
51673810 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* * *
51673838 AGCACTAGGTGTGTGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51673865 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51673880 GACTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51678233 original size:53 final size:53
Alignment explanation
Indices: 51678054--51678257 Score: 167
Period size: 53 Copynumber: 3.8 Consensus size: 53
51678044 AGGGTTTAAG
* * * * * * *
51678054 GATACCAAGTAAGACCATGCCAAGGCATAGCATTGGTAAGTT-TTACAAGATAAA
1 GATACCATGTAAAACCATGCCAAGACATGGCAATGGTAAGTTCATA-AGGA-AAA
* * * * * * * *
51678108 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGAAAA
1 GATACCATGTAAAACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGAAAA
* * * * * *
51678163 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAAACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
*
51678216 GATACCATGTAAAACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCATGTAAAACCATGCCAAGACATGGCAATGGTAAGTT
51678258 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 28, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 45 0.38
54 33 0.28
55 36 0.30
56 3 0.03
57 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAAACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
Found at i:51683014 original size:45 final size:45
Alignment explanation
Indices: 51682963--51683052 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
51682953 TCATTATCAG
51682963 GATTCATCACACTATCACAGTTCATAAATATGGCATGTGTAGCTA
1 GATTCATCACACTATCACAGTTCATAAATATGGCATGTGTAGCTA
*
51683008 GATTCATCATACTATCACAGTTCATAAATATGGCATGTGTAGCTA
1 GATTCATCACACTATCACAGTTCATAAATATGGCATGTGTAGCTA
51683053 CACTGTAGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (45 bp):
GATTCATCACACTATCACAGTTCATAAATATGGCATGTGTAGCTA
Found at i:51686664 original size:39 final size:40
Alignment explanation
Indices: 51686546--51686764 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
51686536 TATTCGAATG
*
51686546 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
51686586 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
51686626 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51686665 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51686705 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
51686744 ATAT-C-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51686765 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
37 6 0.04
38 9 0.05
39 61 0.37
40 90 0.54
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:51686678 original size:79 final size:80
Alignment explanation
Indices: 51686546--51686764 Score: 349
Period size: 79 Copynumber: 2.8 Consensus size: 80
51686536 TATTCGAATG
*
51686546 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
51686611 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
*
51686626 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
51686690 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * *
51686705 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTG-CTATAT-C-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
51686765 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
77 15 0.11
78 4 0.03
79 93 0.70
80 20 0.15
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:51693649 original size:40 final size:40
Alignment explanation
Indices: 51693593--51693814 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
51693583 TATTCGAATG
* *
51693593 ATATCCGGGCTCAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
51693633 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
51693673 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51693713 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51693753 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
51693793 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51693815 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:51696646 original size:46 final size:47
Alignment explanation
Indices: 51696492--51696667 Score: 146
Period size: 47 Copynumber: 3.8 Consensus size: 47
51696482 CATGGGTAAG
* * * *
51696492 GGCCGATGCCATGTCCCAGACACAGTCTTACACTGGCTCACATCT-TA
1 GGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTTACATCTCGA
* * * *
51696539 AGTCGATGCCATGTCCCTGACATGGTCTTACACTAAC-TATCATCTCGTA
1 GGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTA-CATCTCG-A
* * **
51696588 -GCAGATG-GATGTCCCAGACATGTCTTACACTAGCTTACGGCTCGA
1 GGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
** *
51696633 GGCCGATG-CATGTCTTAGACATGTCTTACAGTAGC
1 GGCCGATGCCATGTCCCAGACATGTCTTACACTAGC
51696668 ACTTGTGTTA
Statistics
Matches: 103, Mismatches: 20, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 47 0.46
47 49 0.48
48 5 0.05
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (47 bp):
GGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:51699392 original size:32 final size:33
Alignment explanation
Indices: 51699356--51699441 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 33
51699346 ATCGGGCCTA
*
51699356 AGCCC-ATTCAGATAACAGTGATACTGGGCCAG
1 AGCCCTATTCAGATAACAGTGAAACTGGGCCAG
* * * **
51699388 AGCCCTTTTCAGATTACA-TTAAACTGGGCCTT
1 AGCCCTATTCAGATAACAGTGAAACTGGGCCAG
51699420 AGCCCCTTATTCAGATAACAGT
1 AG-CCC-TATTCAGATAACAGT
51699442 ATGGCCCATA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
32 17 0.40
33 13 0.31
34 11 0.26
35 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (33 bp):
AGCCCTATTCAGATAACAGTGAAACTGGGCCAG
Found at i:51701077 original size:24 final size:24
Alignment explanation
Indices: 51701050--51701146 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
51701040 AACTCCTGCT
51701050 CCTTGATCAGCTCCTAAATCCTC-C
1 CCTT-ATCAGCTCCTAAATCCTCTC
*
51701074 CCTTTATCAGCTCTTAAATCCTCTC
1 CC-TTATCAGCTCCTAAATCCTCTC
*
51701099 CCTCATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
51701123 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
51701147 TTGAAAGCCT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
24 61 0.92
25 5 0.08
ACGTcount: A:0.21, C:0.40, G:0.05, T:0.34
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:51707561 original size:46 final size:46
Alignment explanation
Indices: 51707442--51707567 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
51707432 AACCCGCCCC
* ** * *
51707442 TAAGTGAACTCGGACTCAACTCAATGAACTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51707488 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51707534 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51707568 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:51709992 original size:15 final size:15
Alignment explanation
Indices: 51709960--51710029 Score: 85
Period size: 15 Copynumber: 4.9 Consensus size: 15
51709950 AGATAACAAG
51709960 GAAA-CCAA-ATAAA
1 GAAATCCAAGATAAA
*
51709973 GAAATCCAAGATAGA
1 GAAATCCAAGATAAA
51709988 GAAATCC-AGAATAAA
1 GAAATCCAAG-ATAAA
*
51710003 GAAATCCAAAATAAA
1 GAAATCCAAGATAAA
51710018 GAAA-CCAAGATA
1 GAAATCCAAGATA
51710030 CGATACTATA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
13 4 0.08
14 13 0.27
15 31 0.63
16 1 0.02
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.11
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:51710002 original size:30 final size:28
Alignment explanation
Indices: 51709960--51710025 Score: 96
Period size: 30 Copynumber: 2.3 Consensus size: 28
51709950 AGATAACAAG
* *
51709960 GAAACCAAATAAAGAAATCCAAGATAGA
1 GAAACCAAATAAAGAAATCCAAAATAAA
51709988 GAAATCCAGAATAAAGAAATCCAAAATAAA
1 GAAA-CCA-AATAAAGAAATCCAAAATAAA
51710018 GAAACCAA
1 GAAACCAA
51710026 GATACGATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 5 0.15
29 6 0.18
30 23 0.68
ACGTcount: A:0.62, C:0.15, G:0.12, T:0.11
Consensus pattern (28 bp):
GAAACCAAATAAAGAAATCCAAAATAAA
Found at i:51712951 original size:40 final size:40
Alignment explanation
Indices: 51712894--51713076 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
51712884 TCGAATGATG
* *
51712894 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
51712934 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51712973 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51713011 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
51713052 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51713077 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 24 0.19
38 12 0.09
39 12 0.09
40 71 0.55
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51713028 original size:77 final size:79
Alignment explanation
Indices: 51712894--51713070 Score: 236
Period size: 77 Copynumber: 2.2 Consensus size: 79
51712884 TCGAATGATG
51712894 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
51712959 GTGCGAGTTACTA-A
65 GTGCGAGTTACTATA
* * **
51712973 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
51713035 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
51713051 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAG-CCCGAAGG
51713071 TATTTGAACG
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
76 1 0.01
77 51 0.59
78 17 0.20
79 11 0.13
80 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:51721095 original size:40 final size:39
Alignment explanation
Indices: 51721038--51721217 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
51721028 TCGAATGATG
51721038 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTGACTAAA
* * * *
51721078 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTGACTAAA
* *
51721118 TCCGGGCTAAG-CCGAAGGCA--TGTGCGAGTTA-TAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAAA
* *
51721153 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTA-AA
* *
51721193 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
51721218 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
35 13 0.11
36 11 0.09
37 9 0.07
38 10 0.08
39 33 0.27
40 38 0.31
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:51721170 original size:75 final size:78
Alignment explanation
Indices: 51721038--51721211 Score: 198
Period size: 75 Copynumber: 2.2 Consensus size: 78
51721028 TCGAATGATG
*
51721038 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
51721103 GTGCGAGTTACTAAT
65 GTGCGAG-TACTAAT
* * **
51721118 TCCGGGCTAAG-CCGAAGGC-ATGTGC-GAGTTA-TAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCTATGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
51721178 GTGCGAGTACT-AT
65 GTGCGAGTACTAAT
* *
51721191 AACCGGGCTATGTCCCGAAGG
1 -TCCGGGCTAAG-CCCGAAGG
51721212 TATTTGAACG
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
73 2 0.02
74 14 0.17
75 32 0.39
76 11 0.13
77 5 0.06
78 8 0.10
80 11 0.13
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCTATGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTACTAAT
Found at i:51724515 original size:46 final size:46
Alignment explanation
Indices: 51724448--51724619 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
51724438 AACCCGCCCC
51724448 TAAGTGAACTCAGACTCAACTCAACGAGCTT-GGGCATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAG-TTCGGGCATTTGCATCCA
* * * * *
51724494 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
51724542 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
51724587 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
51724620 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 55 0.54
47 26 0.26
48 3 0.03
49 1 0.01
50 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:51724558 original size:93 final size:93
Alignment explanation
Indices: 51724453--51724623 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
51724443 GCCCCTAAGT
* *
51724453 GAACTCAGACTCAACTCAACGAGCTT-GGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
51724517 ATGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
51724546 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51724611 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51724624 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:51727822 original size:33 final size:35
Alignment explanation
Indices: 51727784--51727864 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 35
51727774 GCCTAAGCCC
*
51727784 ATTCAGATAACAGTGATACTAGGCCAGAGC-CCTT
1 ATTCAGATAACAGTGAAACTAGGCCAGAGCACCTT
* * **
51727818 -TTCAGATTACA-TTAAACTAGGCCTTAGCACCTT
1 ATTCAGATAACAGTGAAACTAGGCCAGAGCACCTT
51727851 ATTCAGATAACAGT
1 ATTCAGATAACAGT
51727865 ATGGCCCATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 10 0.26
35 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTAGGCCAGAGCACCTT
Found at i:51728203 original size:26 final size:26
Alignment explanation
Indices: 51728174--51728226 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
51728164 TCAAACATGC
*
51728174 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAAGGGT
* *
51728200 ATTTCGGTACTTTATCTCCTAAGGGT
1 ATTTAGGTAATTTATCTCCTAAGGGT
51728226 A
1 A
51728227 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAAGGGT
Found at i:51729494 original size:12 final size:12
Alignment explanation
Indices: 51729477--51729571 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
51729467 GCCAACTCCT
*
51729477 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
51729489 GCTCCTAAATCC
1 GCTCCTTAATCA
* *
51729501 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
51729513 GCTCCTAAATCC
1 GCTCCTTAATCA
*
51729525 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
* *
51729537 GCTCCTAAATCC
1 GCTCCTTAATCA
*
51729549 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
51729561 GCTCCTAAATC
1 GCTCCTTAATC
51729572 TTCTCCTAAC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.11
12 45 0.79
13 6 0.11
ACGTcount: A:0.21, C:0.39, G:0.06, T:0.34
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:51729506 original size:24 final size:23
Alignment explanation
Indices: 51729473--51729578 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 23
51729463 GCCGGCCAAC
51729473 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTT-ATCAGCTCCTAAA
51729498 TCCTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCC-TTATCAGCTCCTAAA
51729522 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
51729546 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
*
51729570 TCTTCTCCT
1 TCCTCTCCT
51729579 AACAGCCTTT
Statistics
Matches: 78, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
23 3 0.04
24 67 0.86
25 8 0.10
ACGTcount: A:0.19, C:0.40, G:0.06, T:0.36
Consensus pattern (23 bp):
TCCTCTCCTTATCAGCTCCTAAA
Found at i:51733689 original size:40 final size:40
Alignment explanation
Indices: 51733610--51733767 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
51733600 TTCGAATGAT
* * * *
51733610 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
51733650 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
51733690 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
51733730 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
51733768 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:51733788 original size:80 final size:80
Alignment explanation
Indices: 51733610--51733797 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
51733600 TTCGAATGAT
* *
51733610 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
51733675 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
51733690 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
51733751 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
51733771 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
51733798 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:51741757 original size:40 final size:40
Alignment explanation
Indices: 51741678--51741835 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
51741668 TTCGAATGAT
* * * *
51741678 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
51741718 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
51741758 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
51741798 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
51741836 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:51741856 original size:80 final size:80
Alignment explanation
Indices: 51741678--51741865 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
51741668 TTCGAATGAT
* *
51741678 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
51741743 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
51741758 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
51741819 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
51741839 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
51741866 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:51744743 original size:40 final size:40
Alignment explanation
Indices: 51744678--51744897 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
51744668 TATTCGGATG
* *
51744678 ATATTCGGGCTAAGTCCCGACGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51744718 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
51744761 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
51744801 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
51744841 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51744881 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
51744898 AAAGATACTT
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 9 0.06
40 111 0.71
41 1 0.01
43 36 0.23
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:51744822 original size:83 final size:80
Alignment explanation
Indices: 51744683--51744897 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 80
51744673 GGATGATATT
* * **
51744683 CGGGCTAAGTCCCGACGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
51744748 GCGAGTAGTTG-CTATACC
66 GC---TAG-TGACTATACC
* *
51744766 CGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
51744831 GCTAGTGACTATATC
66 GCTAGTGACTATACC
* * *
51744846 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
51744898 AAAGATACTT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 12 0.10
80 44 0.37
81 2 0.02
83 61 0.51
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATACC
Found at i:51749935 original size:22 final size:23
Alignment explanation
Indices: 51749908--51749952 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
51749898 GGGTATCTAC
51749908 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
51749930 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
51749953 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:51749956 original size:17 final size:17
Alignment explanation
Indices: 51749934--51749984 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
51749924 ATTACAAAAT
51749934 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
51749951 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
51749970 CATATCTTCAAAGAT
1 CATATCTTCTAAGAT
51749985 CATGTGTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:51749957 original size:22 final size:22
Alignment explanation
Indices: 51749905--51749962 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
51749895 AAAGGGTATC
*
51749905 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
51749926 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
51749949 TACATATCATATCT
1 TACAAATCATATCT
51749963 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51749965 original size:19 final size:20
Alignment explanation
Indices: 51749918--51749975 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
51749908 AAATCAAATC
*
51749918 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
51749941 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
51749960 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
51749976 TTCAAAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:51755075 original size:22 final size:23
Alignment explanation
Indices: 51755048--51755092 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
51755038 GGGTATCTAC
51755048 AAATCAAATC-TATAAGATTACA
1 AAATCAAATCTTATAAGATTACA
* *
51755070 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTATAAGATTACA
51755093 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTATAAGATTACA
Found at i:51755090 original size:23 final size:22
Alignment explanation
Indices: 51755045--51755102 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
51755035 AAAGGGTATC
* *
51755045 TACAAATCAAATC-TATAAGAT
1 TACAAATCATATCTTCTAAGAT
51755066 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
51755089 TACATATCATATCT
1 TACAAATCATATCT
51755103 AATATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51755096 original size:17 final size:17
Alignment explanation
Indices: 51755074--51755124 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
51755064 ATTACAAAAT
51755074 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
51755091 CATATCATATCTAATATTG
1 CATATC-T-TCTAAGATTA
*
51755110 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
51755125 CATGTTTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 14 0.50
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:51756933 original size:47 final size:46
Alignment explanation
Indices: 51756879--51757141 Score: 148
Period size: 47 Copynumber: 5.6 Consensus size: 46
51756869 GTAAGGTGCT
*
51756879 GATGCCATGTCCCAGACACGATCTTACACTGGCTCA-CATCT-TAAGT-C
1 GATGCCATGTCCCAGACATG-TCTTACACTGGCT-ATCATCTCT-A-TCC
* *
51756926 GATGCCATGTCCCAGATATGGTCTTACACTGACTATCATCTCGTATCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTATCATCTC-TATCC
* * * *
51756974 TATG-CATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTAT-CATCTCTA-TCC
* * ** * * * *
51757020 AATG-CATGTTCCAGACATGTCTTACACTAAC-ACTCGTTTCAATGCT
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTA-TCATCTCTAT-CC
* * * * * **
51757066 GATGCCATGCCCCAGATATGGTCTTACACTTGCTCTCA-CAATGTGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTATCATC--TCTATCC
51757114 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACATGTCTTACACT
51757142 AGTTCACACA
Statistics
Matches: 168, Mismatches: 33, Indels: 31
0.72 0.14 0.13
Matches are distributed among these distances:
45 2 0.01
46 68 0.40
47 72 0.43
48 24 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTATCATCTCTATCC
Found at i:51757014 original size:46 final size:47
Alignment explanation
Indices: 51756884--51757047 Score: 160
Period size: 46 Copynumber: 3.5 Consensus size: 47
51756874 GTGCTGATGC
* * *
51756884 CATGTCCCAGACACGATCTTACACTGGCTCACATCT--TAAGT-CGATG
1 CATGTCCCAGACATG-TCTTACACTGGCTTACATCTCGT-AGTCCAATG
* * *
51756930 CCATGTCCCAGATATGGTCTTACACTGAC-TATCATCTCGTA-TCCTATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGTAGTCCAATG
* *
51756978 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGTCCAATG
*
51757024 CATGTTCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
51757048 AACACTCGTT
Statistics
Matches: 99, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 47 0.47
47 44 0.44
48 6 0.06
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGTCCAATG
Found at i:51757517 original size:30 final size:30
Alignment explanation
Indices: 51757476--51757533 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
51757466 AATTTCACAT
* *
51757476 CTTTGATAAAATGACCATTTTGCCCCTAAA
1 CTTTGACAAAATGACCATTTTACCCCTAAA
51757506 CTTTGACAAAATGACCATTTTACCCCTA
1 CTTTGACAAAATGACCATTTTACCCCTA
51757534 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTTGACAAAATGACCATTTTACCCCTAAA
Found at i:51761371 original size:24 final size:24
Alignment explanation
Indices: 51761320--51761508 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
51761310 GCTTTATCAT
*
51761320 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
51761345 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51761369 ATAACTAGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51761392 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
51761415 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
51761439 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
51761463 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51761486 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51761509 GCACTTCCTC
Statistics
Matches: 152, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
23 66 0.43
24 74 0.49
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51761395 original size:23 final size:23
Alignment explanation
Indices: 51761341--51761507 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
51761331 CCTAGCCTCT
*
51761341 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
51761364 TTTTAATAACTAGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51761388 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
51761411 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
51761434 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
51761458 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51761482 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
51761505 TTT
1 TTT
51761508 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 69 0.51
24 66 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:51761509 original size:47 final size:47
Alignment explanation
Indices: 51761341--51761508 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
51761331 CCTAGCCTCT
* * *
51761341 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
51761388 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
51761434 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
51761482 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
51761509 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 21 0.19
47 70 0.62
48 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:51761580 original size:9 final size:9
Alignment explanation
Indices: 51761566--51761622 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51761556 ATCTCATGTG
51761566 CATATCATA
1 CATATCATA
*
51761575 CATATCATGTG
1 CATATCA--TA
51761586 CATATCATA
1 CATATCATA
* *
51761595 CATGTCATGTG
1 CATATCA--TA
51761606 CATATCATA
1 CATATCATA
51761615 CATATCAT
1 CATATCAT
51761623 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51761582 original size:20 final size:20
Alignment explanation
Indices: 51761554--51761624 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
51761544 GCATTTATGA
*
51761554 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51761574 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51761594 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51761614 ACATATCATGT
1 ACATATCATGT
51761625 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51761589 original size:11 final size:11
Alignment explanation
Indices: 51761559--51761613 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51761549 TATGAACATC
51761559 TCATGTGCATA
1 TCATGTGCATA
*
51761570 TCA--TACATA
1 TCATGTGCATA
51761579 TCATGTGCATA
1 TCATGTGCATA
* *
51761590 TCA--TACATG
1 TCATGTGCATA
51761599 TCATGTGCATA
1 TCATGTGCATA
51761610 TCAT
1 TCAT
51761614 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:51762942 original size:27 final size:27
Alignment explanation
Indices: 51762922--51763264 Score: 376
Period size: 27 Copynumber: 12.7 Consensus size: 27
51762912 AGGGTATTTT
*
51762922 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
51762949 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51762976 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
51763003 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
51763030 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * * *
51763057 GGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51763084 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
51763111 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
51763138 -GATAATTATGTAAATC-AGGGGTAAAAT
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
51763165 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
51763192 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
51763219 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
51763246 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
51763265 AGTACTTTGG
Statistics
Matches: 274, Mismatches: 29, Indels: 26
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.02
27 263 0.96
28 6 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:51763279 original size:135 final size:135
Alignment explanation
Indices: 51762923--51763264 Score: 614
Period size: 135 Copynumber: 2.5 Consensus size: 135
51762913 GGGTATTTTA
* * * *
51762923 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTGT
1 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGT
*
51762987 AAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATGGTAATTATGTAAATTAGGGGT
65 AAATCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAATGGTAATTATGTAAATTAGGGGT
51763052 AAAACG
130 AAAACG
51763058 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
51763123 AATCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAATGGTAATTATGTAAATTAGGGGTA
66 AATCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAATGGTAATTATGTAAATTAGGGGTA
51763188 AAACG
131 AAACG
*
51763193 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
51763258 AATCGAG
66 AATCGAG
51763265 AGTACTTTGG
Statistics
Matches: 200, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 199 1.00
136 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (135 bp):
GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAATGGTAATTATGTAAATTAGGGGTA
AAACG
Found at i:51765084 original size:40 final size:40
Alignment explanation
Indices: 51764982--51765165 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
51764972 AAATTGAATG
* * * * * *
51764982 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
51765022 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
51765062 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
51765102 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
51765142 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51765166 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 3 0.03
40 115 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:51765190 original size:80 final size:80
Alignment explanation
Indices: 51765022--51765210 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
51765012 GCTGGAAATT
* * *
51765022 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
51765087 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
51765102 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
51765165 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
51765182 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51765211 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:51768019 original size:40 final size:40
Alignment explanation
Indices: 51767940--51768097 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
51767930 TTCGAATGAT
* * * *
51767940 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
51767980 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
51768020 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
51768060 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
51768098 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:51768118 original size:80 final size:80
Alignment explanation
Indices: 51767940--51768127 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
51767930 TTCGAATGAT
* *
51767940 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
51768005 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
51768020 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
51768081 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
51768101 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
51768128 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:51771001 original size:40 final size:40
Alignment explanation
Indices: 51770936--51771155 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
51770926 TATTCGGATG
* *
51770936 ATATTCGGGCTAAGTCCCGACGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51770976 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
51771019 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
51771059 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
51771099 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51771139 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
51771156 AAAGATACTT
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 9 0.06
40 111 0.71
41 1 0.01
43 36 0.23
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:51771080 original size:83 final size:80
Alignment explanation
Indices: 51770941--51771155 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 80
51770931 GGATGATATT
* * **
51770941 CGGGCTAAGTCCCGACGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
51771006 GCGAGTAGTTG-CTATACC
66 GC---TAG-TGACTATACC
* *
51771024 CGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
51771089 GCTAGTGACTATATC
66 GCTAGTGACTATACC
* * *
51771104 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
51771156 AAAGATACTT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 12 0.10
80 44 0.37
81 2 0.02
83 61 0.51
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATACC
Found at i:51777514 original size:17 final size:17
Alignment explanation
Indices: 51777464--51777514 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
51777454 TAGACACATG
*
51777464 ATCTTTGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
51777481 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
51777500 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
51777515 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:51777514 original size:22 final size:21
Alignment explanation
Indices: 51777486--51777543 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
51777476 ATGCAATCTT
*
51777486 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
51777507 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
51777530 AGATTTGATTTGTA
1 AGATATGATTTGTA
51777544 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:51778605 original size:40 final size:40
Alignment explanation
Indices: 51778476--51778690 Score: 201
Period size: 40 Copynumber: 5.5 Consensus size: 40
51778466 GAATCACGTA
* * * * * * *
51778476 CCTTCGGAATTTAA-CCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATG
* * * *
51778515 TCTTCGGGACATAGCCCGG-TTATAGTGATTCGCAC-AATG
1 CCTTCGGGACTTAACCCGGATT-TAGTGACTCGCACAAATG
51778554 CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATG
* * *
51778594 CCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAAT-
1 CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATG
* * *
51778633 --TTCGGGACTTAA-CCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGACTTAACCCGGATTTAGTGAC-TCGCACAAATG
*
51778671 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
51778691 CACCATTCGA
Statistics
Matches: 144, Mismatches: 23, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
36 11 0.08
37 20 0.14
39 41 0.28
40 67 0.47
41 5 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATG
Found at i:51778612 original size:79 final size:78
Alignment explanation
Indices: 51778476--51778689 Score: 227
Period size: 79 Copynumber: 2.7 Consensus size: 78
51778466 GAATCACGTA
* * * * * * * * *
51778476 CCTTCGGAATTTAACCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGGACTTAACCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
* *
51778541 GATTCGCAC-AAT
66 AACTCGCACAAAT
* * *
51778553 GCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTG
1 -CCTTCGGGACTTAA-CCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
51778618 GTAACTCGCACAAAT
64 GTAACTCGCACAAAT
* * *
51778633 --TTCGGGACTTAACCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCGGATTTAGTGAC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
51778690 ACACCATTCG
Statistics
Matches: 115, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
76 13 0.11
77 39 0.34
78 12 0.10
79 48 0.42
80 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATTTAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAAT
Found at i:51786707 original size:41 final size:40
Alignment explanation
Indices: 51786582--51786731 Score: 203
Period size: 40 Copynumber: 3.7 Consensus size: 40
51786572 ATAGTGATTT
* *
51786582 GCACAAATGCCCTCGGGACTTAACCCGGATTTAGTGACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTC
* *
51786622 GCACGAATGCCTTCGGGACTTAA-CCTGATTTTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGA-TTTAGTAACTC
* *
51786662 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TC
* *
51786703 GCACAAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGACTTAACCCGGA
51786732 CACCATTCGA
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.04
40 61 0.63
41 32 0.33
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTC
Found at i:51791941 original size:70 final size:71
Alignment explanation
Indices: 51791858--51792020 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
51791848 CGATTTGTCT
51791858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51791922 CTTTCA
66 CTTTCA
51791928 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51791993 CTTTCA
66 CTTTCA
51791999 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51792021 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51792058 original size:71 final size:70
Alignment explanation
Indices: 51791858--51792054 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
51791848 CGATTTGTCT
* * * *
51791858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51791922 CTTTCA
65 CTTTCA
* * * *
51791928 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51791993 CTTTCA
65 CTTTCA
* *
51791999 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51792055 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51802937 original size:55 final size:55
Alignment explanation
Indices: 51802837--51802961 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
51802827 TGTGATATGG
* * * * *
51802837 CCGTGGTCGAGCCTGCCAAAACAATACGGGCGTGGGACACACCCGTGTGGAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTCTAGAACAA
* * ** *
51802892 CCGTGGTCGAGCCTGCCAAAACAGCACGGGCGTTCGACATGCCCGTCTAGAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTCTAGAACAA
*
51802947 CCGTGGTCGAACCTG
1 CCGTGGTCGAGCCTG
51802962 TTAAATTAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.14
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTCTAGAACAA
Found at i:51806435 original size:27 final size:26
Alignment explanation
Indices: 51806398--51806509 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
51806388 AGCATGGCTG
* *
51806398 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51806424 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
51806452 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51806479 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51806506 CCAG
1 CCAG
51806510 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51806490 original size:54 final size:54
Alignment explanation
Indices: 51806398--51806509 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
51806388 AGCATGGCTG
* *
51806398 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
51806452 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
51806506 CCAG
1 CCAG
51806510 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:51806654 original size:25 final size:25
Alignment explanation
Indices: 51806613--51806660 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
51806603 CAAAATTAAC
*
51806613 CCTAGGGGCATATTGGTCATTTTTA
1 CCTAGGGGCATATTGGTAATTTTTA
*
51806638 CCTAGGGGTATCA-TGGTAATTTT
1 CCTAGGGGCAT-ATTGGTAATTTT
51806661 CCATACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.40
Consensus pattern (25 bp):
CCTAGGGGCATATTGGTAATTTTTA
Found at i:51808401 original size:40 final size:40
Alignment explanation
Indices: 51808327--51808537 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
51808317 TCTTCGGAAT
** * *
51808327 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
51808365 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
51808405 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
51808445 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
51808485 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
51808525 TTAGCTCGGATAT
1 TTAGCCCGGATAT
51808538 CATTCGAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 126 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:51811450 original size:24 final size:24
Alignment explanation
Indices: 51811423--51811493 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
51811413 CTAGATTTCC
*
51811423 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
51811447 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
51811471 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
51811494 CTCCTAACAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:51811463 original size:48 final size:48
Alignment explanation
Indices: 51811400--51811493 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
51811390 ACCTCTTGAT
* * *
51811400 CCTTGATCAGCTCCTAGATTTCC-TCCCTTATCTACTCCTAAATCCTATC
1 CCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTATC
51811449 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTGATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
51811494 CTCCTAACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 32 0.80
49 4 0.10
ACGTcount: A:0.24, C:0.37, G:0.03, T:0.35
Consensus pattern (48 bp):
CCTTGATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTATC
Found at i:51813848 original size:27 final size:27
Alignment explanation
Indices: 51813770--51813881 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
51813760 AGCATGGCTG
* * *
51813770 CCAGAACAGATAA-TATGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
51813796 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
51813824 CCAGAACAGA-AATATGTGGAAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
51813851 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
51813878 CCAG
1 CCAG
51813882 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:51815330 original size:24 final size:24
Alignment explanation
Indices: 51815303--51815373 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
51815293 CTAGATTTCC
**
51815303 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
51815327 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
51815351 TCCCATATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
51815374 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.27, C:0.38, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:51818663 original size:40 final size:40
Alignment explanation
Indices: 51818605--51818797 Score: 239
Period size: 40 Copynumber: 4.8 Consensus size: 40
51818595 TTATTTGATG
* **
51818605 TGGAATGGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
51818645 TGGAATCGTATCTGGGCTTAAAGACCCGCAGGCTTCATGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
51818685 TGGAATTGTATCCGGGCTTAAAGACTCGCAGGCTTCGTGC
1 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
51818725 TGGAATTGTAT-TCGAGCTTAAAGACCCGCAGGCTTCGTAC
1 TGGAATTGTATCT-GGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
51818765 TGGAA-TGACATCTGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCTGGGCTTAAAGACCCGCAGGCT
51818798 GTGCTAGATA
Statistics
Matches: 134, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 17 0.13
40 116 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:51827443 original size:79 final size:82
Alignment explanation
Indices: 51827303--51827487 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51827293 TCGAATGATG
* * *
51827303 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
51827367 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
51827383 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
51827445 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
51827463 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51827488 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:51827495 original size:40 final size:40
Alignment explanation
Indices: 51827304--51827495 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
51827294 CGAATGATGT
* * * * *
51827304 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
51827344 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
51827384 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
51827423 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
51827463 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
51827496 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:51827518 original size:79 final size:79
Alignment explanation
Indices: 51827303--51827520 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
51827293 TCGAATGATG
* * * * ** *
51827303 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
51827366 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
51827383 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
51827448 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
51827463 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
51827521 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:51835491 original size:79 final size:82
Alignment explanation
Indices: 51835351--51835535 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51835341 TCGAATGATG
* * *
51835351 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
51835415 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
51835431 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
51835493 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
51835511 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51835536 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:51835543 original size:40 final size:40
Alignment explanation
Indices: 51835352--51835543 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
51835342 CGAATGATGT
* * * * *
51835352 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
51835392 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
51835432 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
51835471 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
51835511 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
51835544 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:51835566 original size:79 final size:79
Alignment explanation
Indices: 51835351--51835568 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
51835341 TCGAATGATG
* * * * ** *
51835351 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
51835414 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
51835431 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
51835496 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
51835511 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
51835569 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:51845272 original size:27 final size:29
Alignment explanation
Indices: 51845242--51845354 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
51845232 ATGCAAGAGC
*
51845242 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
51845269 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
51845298 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* **
51845328 ATATATTTTCAGCTCGCACACTTAGTG
1 ATATATGTGAAGCTCGCACACTTAGTG
51845355 TTGTATAATC
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 42 0.53
30 29 0.37
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:51845361 original size:29 final size:29
Alignment explanation
Indices: 51845254--51845354 Score: 193
Period size: 29 Copynumber: 3.4 Consensus size: 29
51845244 ATAGTGAATC
51845254 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51845283 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
51845313 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51845342 CGCACACTTAGTG
1 CGCACACTTAGTG
51845355 TTGTATAATC
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:51854440 original size:47 final size:48
Alignment explanation
Indices: 51854366--51854544 Score: 215
Period size: 47 Copynumber: 3.8 Consensus size: 48
51854356 GGCCACATTT
* * *
51854366 TGAGAGCCAGTGTAAGACCATGACTGGGACATGGCATTGACATTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA
* *
51854414 TGAGAGCTAGTGTAAGA-CATGTCTGGGA-AT-GCATCGACGA-CGAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGAGA
* * *
51854459 TGATAGTCAGTGTAAGACCATGTCTGGGACATGGAATCGAC-TTGAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA
* * *
51854506 TGTGAGCCAGTGTAAGACCTTGTCTGGGGCATGGCATCG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
51854545 GCACTTTACC
Statistics
Matches: 110, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
45 24 0.22
46 14 0.13
47 49 0.45
48 23 0.21
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA
Found at i:51856941 original size:67 final size:67
Alignment explanation
Indices: 51856827--51856971 Score: 227
Period size: 67 Copynumber: 2.2 Consensus size: 67
51856817 ACATGGCCTT
* *
51856827 AGACATGCCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACTTACTCACACGACCA
1 AGACACGCCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCA
51856892 CA
66 CA
* * * **
51856894 AGACCCGCCCGTGTGTCTAGGTCATGTCAAAACATGGCATACATACTGACCTACTCACGTGACCA
1 AGACACGCCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCA
51856959 CA
66 CA
51856961 AGACACGCCCG
1 AGACACGCCCG
51856972 GGTGACTTGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.19
Consensus pattern (67 bp):
AGACACGCCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCA
CA
Found at i:51859529 original size:17 final size:18
Alignment explanation
Indices: 51859493--51859532 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
51859483 CCTAGAATCT
51859493 CACACGCCCGTGTGGGCC
1 CACACGCCCGTGTGGGCC
*
51859511 CACATGCCCGTGT-GGCC
1 CACACGCCCGTGTGGGCC
51859528 CACAC
1 CACAC
51859533 AGCCTAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.15, C:0.45, G:0.28, T:0.12
Consensus pattern (18 bp):
CACACGCCCGTGTGGGCC
Found at i:51860821 original size:26 final size:26
Alignment explanation
Indices: 51860786--51860961 Score: 117
Period size: 27 Copynumber: 6.5 Consensus size: 26
51860776 TCACACAACT
*
51860786 AAAGCTTTTCTTTCATATTTCTCCAC
1 AAAGGTTTTCTTTCATATTTCTCCAC
* * *
51860812 AAAGGGTTTCCTTTTATATTTCTCCAAA
1 AAA-GGTTTTCTTTCATATTTCTCC-AC
* * *
51860840 AAAGCTTTTCATTCATATTTTTTGCCAC
1 AAAGGTTTTCTTTCATA-TTTCT-CCAC
*
51860868 AAAGGCTTTTCATTT-ATATTTCGT-CAA
1 AAAGG-TTTTC-TTTCATATTTC-TCCAC
* * * *
51860895 AAAGACTATTCATTCATATCT-TCCAC
1 AAAG-GTTTTCTTTCATATTTCTCCAC
*
51860921 AAAGGTTATTCTTTCATA-TTCACCAC
1 AAAGGTT-TTCTTTCATATTTCTCCAC
51860947 AAAGGCTTTTCTTTC
1 AAAGG-TTTTCTTTC
51860962 TTGACATGTT
Statistics
Matches: 113, Mismatches: 24, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
25 3 0.03
26 36 0.32
27 45 0.40
28 16 0.14
29 11 0.10
30 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.43
Consensus pattern (26 bp):
AAAGGTTTTCTTTCATATTTCTCCAC
Done.