Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 200 of 444
Found at i:55928008 original size:108 final size:109
Alignment explanation
Indices: 55927810--55928009 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 109
55927800 TTTAAGGATA
* *
55927810 CCATGTAAGACCATGCCAAGGCATGACAATGGTAAGGTTTCTAAGGAAAGGAAATCACGTAATAC
1 CCATGTAAGACCATGCCAAGGCATGACAATGGTAAGGTTTCTAAGGAAAGGAAACCACGTAAGAC
*
55927875 CATGTCAAGACATGGCATTGATAAGTTACCATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
* * * * * *
55927919 CCATGTAAGACCATGCCAAGGCATGGCATTGGT-TGG-TTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATGGTAAGGTTTC-TAAGGAAAGGAAACCACGTAAGA
*
55927982 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
55928010 TCAAAAGAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 31 0.39
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGACAATGGTAAGGTTTCTAAGGAAAGGAAACCACGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
Found at i:55928268 original size:16 final size:16
Alignment explanation
Indices: 55928247--55928277 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55928237 ACAAATTTGA
55928247 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
55928263 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
55928278 AGTTAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:55932455 original size:68 final size:65
Alignment explanation
Indices: 55932377--55932598 Score: 211
Period size: 68 Copynumber: 3.4 Consensus size: 65
55932367 TAATACGGGA
* *
55932377 TGTATACCATGTGTATAAGAGAGCTACGAGATATTATGAGGTAGCTAGGTCGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAGATA-TA-GA-GTAGCTAGGTCGCATGGGTGATACT
55932442 ATG
63 ATG
* * * * *
55932445 TGTACACCATGTAG-ACAAGAGAGCTACGAG--ATAGATGTAGCTAGGTTGCATGTGTGGTTCCA
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATATAGA-GTAGCTAGGTCGCATGGGTGATACTA
55932507 GGTG
64 --TG
* * * ** * *
55932511 AAGAACACCACGTAAACAAGAGAGCTACGAGATA-A-AGTGGCTAGGTCACATGGGTGATACTAT
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATATAGAGTAGCTAGGTCGCATGGGTGATACTAT
55932574 G
65 G
55932575 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
55932599 CAAAATTATG
Statistics
Matches: 123, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
63 19 0.15
64 25 0.20
65 2 0.02
66 22 0.18
67 26 0.21
68 27 0.22
69 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (65 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATATAGAGTAGCTAGGTCGCATGGGTGATACTATG
Found at i:55934964 original size:40 final size:40
Alignment explanation
Indices: 55934891--55935022 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
55934881 GATAACTGGA
* **
55934891 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
* * *
55934931 CTATGTCCCGAAGGCATTTATGCTAG-TGACTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTG-CTATATCCGGG
* * *
55934971 CTAAGACCCGAAGGCATTTGTGTGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
**
55935010 CTAACTCCCGAAG
1 CTAAGACCCGAAG
55935023 ATACTTGGGT
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 15 0.20
40 59 0.78
41 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTATGCGAGTTGCTATATCCGGG
Found at i:55937832 original size:40 final size:40
Alignment explanation
Indices: 55937751--55937968 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
55937741 CAACCAAGTA
* * *
55937751 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
55937790 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
55937830 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
55937870 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
55937910 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
55937950 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
55937969 TTACCTTCCG
Statistics
Matches: 167, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 149 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:55940913 original size:41 final size:41
Alignment explanation
Indices: 55940868--55940985 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
55940858 TGAAAGATAA
55940868 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
55940909 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
55940939 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
55940980 ATGTAG
1 ATGTAG
55940986 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:55940926 original size:71 final size:71
Alignment explanation
Indices: 55940836--55940999 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
55940826 GAGATGTATC
*
55940836 CCATGTAGACAAGAAAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
55940901 AGGACA
66 AGGACA
55940907 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
55940972 AGGACA
66 AGGACA
55940978 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
55941000 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:55947299 original size:40 final size:40
Alignment explanation
Indices: 55947213--55947292 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
55947203 CTAGAATCGA
* *
55947213 GACTTAGCCTGGATATAGTAACTCGCACAAATGCCTTCGG
1 GACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
*
55947253 GACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
1 GACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
55947293 ATCTTAGTCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
Found at i:55949177 original size:51 final size:51
Alignment explanation
Indices: 55949060--55949195 Score: 139
Period size: 51 Copynumber: 2.7 Consensus size: 51
55949050 CTACCACCAA
* * * *
55949060 ATCTCTAAGAATATAATATCATATCTTCTAGGATTACATATCTTAGATAAG
1 ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
* * * * * * **
55949111 ATATGTAA-TCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAC-TATAATATCATATCTTATAAGATTACATATCATAGATAAG
*
55949162 ATCTCTAAGACTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGACTATAATATCATATCTTATAAGAT
55949196 CATGTTTCTA
Statistics
Matches: 65, Mismatches: 18, Indels: 4
0.75 0.21 0.05
Matches are distributed among these distances:
51 64 0.98
52 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
Found at i:55951995 original size:51 final size:51
Alignment explanation
Indices: 55951878--55952013 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
55951868 CTACCACCAA
* * *
55951878 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAG
1 ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
* * * * * * **
55951929 ATATGTAA-TCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAC-TATAATATCATATCTTATAAGATTACATATCATAGATAAG
*
55951980 ATCTCTAAGACTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGACTATAATATCATATCTTATAAGAT
55952014 CATGTTTCTA
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
51 65 0.98
52 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGACTATAATATCATATCTTATAAGATTACATATCATAGATAAG
Found at i:55958643 original size:40 final size:40
Alignment explanation
Indices: 55958574--55958699 Score: 200
Period size: 40 Copynumber: 3.2 Consensus size: 40
55958564 AACCCAAGTA
* **
55958574 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
55958613 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
55958653 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
55958693 CCTTCGG
1 CCTTCGG
55958700 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.16
40 68 0.84
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:55961977 original size:53 final size:54
Alignment explanation
Indices: 55961891--55962094 Score: 189
Period size: 54 Copynumber: 3.8 Consensus size: 54
55961881 TTTCCTTTTT
* * * * *
55961891 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCTTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * *
55961944 GAACTCACCAATGGCATGCCTTGGCATGGTCTTACACGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * * *
55961998 GTAACTCATC-ATGCCATGTCTTGACATGATCTTACATGAT-TTTCTTACCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCT-TTGCCTTATA
* * * *
55962052 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
55962095 CTTATCTTAC
Statistics
Matches: 120, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
53 51 0.43
54 61 0.51
55 8 0.07
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
Found at i:55962240 original size:48 final size:48
Alignment explanation
Indices: 55962125--55962233 Score: 209
Period size: 48 Copynumber: 2.3 Consensus size: 48
55962115 GTTCCAAACA
*
55962125 TGGTCTTACGTGGTATCCTTGTCTTAGTGCCAATGTCACATCTTGATG
1 TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGTCACATCTTGATG
55962173 TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGTCACATCTTGATG
1 TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGTCACATCTTGATG
55962221 TGGTCTTACATGG
1 TGGTCTTACATGG
55962234 AGTCCTTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.39
Consensus pattern (48 bp):
TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGTCACATCTTGATG
Found at i:55964430 original size:15 final size:16
Alignment explanation
Indices: 55964410--55964442 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
55964400 TTGTGGGCTC
55964410 AGTTCGC-CCCTCGTG
1 AGTTCGCACCCTCGTG
*
55964425 AGTTCGCACGCTCGTG
1 AGTTCGCACCCTCGTG
55964441 AG
1 AG
55964443 GCCTCGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.24
Consensus pattern (16 bp):
AGTTCGCACCCTCGTG
Found at i:55973321 original size:48 final size:48
Alignment explanation
Indices: 55973253--55973436 Score: 314
Period size: 48 Copynumber: 3.8 Consensus size: 48
55973243 GATAAATAAG
*
55973253 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTGATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
55973301 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
55973349 TGTATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
55973397 TATATGTGTGATATGTATATATGTGATAAAGCCTAATGGC
1 TATATGTGTGATATG--TATATGTGGTAAAGCCGAATGGC
55973437 CCATGTGATG
Statistics
Matches: 129, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 108 0.84
50 21 0.16
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (48 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:55973452 original size:48 final size:47
Alignment explanation
Indices: 55973256--55973593 Score: 275
Period size: 47 Copynumber: 7.1 Consensus size: 47
55973246 AAATAAGTAT
* **
55973256 ATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTGATGTGAAAT-A
1 ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* * *
55973303 TATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAATGT
1 -ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* *
55973352 ATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-A
1 ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* *
55973399 TATGTGTGATATGTATATATGTGATAAAGCCTAATGGCCCATGTGATGA
1 -ATGTGTGATATG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * *
55973448 A--TGTGAAAGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * * *
55973495 A--TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * * *
55973542 A--TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGG
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
55973589 ATGTG
1 ATGTG
55973594 AAAGTGTATA
Statistics
Matches: 261, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
46 6 0.02
47 120 0.46
48 106 0.41
49 3 0.01
50 26 0.10
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTGATGA
Found at i:55973452 original size:96 final size:96
Alignment explanation
Indices: 55973256--55973546 Score: 339
Period size: 96 Copynumber: 3.1 Consensus size: 96
55973246 AAATAAGTAT
*
55973256 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTGATGTGAAATATATGTGTGATATG--TAT
1 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
* * * *
55973319 ATGTGGTAAAGCCGAATGGCTAATGTGAAATGT
66 ATGTGATAAAGCCTAATGGCCAATGTG--ATGA
55973352 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
1 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
*
55973417 ATGTGATAAAGCCTAATGGCCCATGTGATGA
66 ATGTGATAAAGCCTAATGGCCAATGTGATGA
* * * * *
55973448 A--TGTGAAAGTGCATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-A--TGTGAAAGTG
1 ATGTGTGATA-TGTATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATATGTGTGATA-TG
* *
55973506 TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
61 TATATATGTGATAAAGCCTAATGGCCAATGTGATGA
55973542 ATGTG
1 ATGTG
55973547 AAAGTGTATA
Statistics
Matches: 173, Mismatches: 13, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
93 6 0.03
94 43 0.25
95 12 0.07
96 67 0.39
97 19 0.11
98 26 0.15
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (96 bp):
ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
ATGTGATAAAGCCTAATGGCCAATGTGATGA
Found at i:55973482 original size:47 final size:47
Alignment explanation
Indices: 55973410--55973614 Score: 320
Period size: 47 Copynumber: 4.4 Consensus size: 47
55973400 ATGTGTGATA
* * *
55973410 TGTATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
55973457 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
55973504 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
55973551 TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
55973598 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
55973615 TCTCGAAGGG
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:55988750 original size:50 final size:50
Alignment explanation
Indices: 55988685--55989061 Score: 280
Period size: 50 Copynumber: 7.5 Consensus size: 50
55988675 TTAGGTCATG
**
55988685 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTCACA
* * * * *
55988735 TGTGTAGTACTAAGTGGAGGCTACT--ATGCATACCCGACAACTTCAA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGA-TAGTT-AAGTCACA
* * * * * *
55988786 TGTGTAGTACTAAGTGCAGGCTATTACATGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTCACA
* * * * * *
55988836 TGTGTAGTACTAAGTGTAGGGTACTACGTGTACTAGATAGTTAGGTCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTCACA
* * ** *** * * * *
55988886 TGTGCAATACTAAGTGCAGAATACTATGGGTACCCGACAACTTCAA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGA-TAGTT-AAGTCACA
* * * * * *
55988937 TGTGTAGTACTAAGTACAAGCTACTACGTGTATCAGATGGTT-AGTTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAG-TCACA
* * * *
55988987 TGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTCACA
*
55989036 TGTGTCGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
55989062 TGCGTACTAG
Statistics
Matches: 256, Mismatches: 60, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
48 4 0.02
49 28 0.11
50 152 0.59
51 66 0.26
52 3 0.01
53 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTCACA
Found at i:55988949 original size:151 final size:151
Alignment explanation
Indices: 55988675--55989068 Score: 549
Period size: 151 Copynumber: 2.6 Consensus size: 151
55988665 TAAGATGCTT
* * * *
55988675 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAAGTTGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGC
* * * *
55988740 AGTACTAAGTGGAGGCTACTATGCATACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTACAA
*
55988805 GCTATTACATGTATCAAATGG
131 GCTACTACATGTATCAAATGG
* * * * * *
55988826 TTAGGTCACGTGTGTAGTACTAAGTGTAGGGTACTACGTGTACTAGATAGTTAGGTCACTTGTGC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGC
* ** *
55988891 AATACTAAGTGCAGAATACTATGGGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTACAA
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTACAA
* *
55988956 GCTACTACGTGTATCAGATGG
131 GCTACTACATGTATCAAATGG
* * *
55988977 TTAGTTCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGTT-GGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTG-
55989041 C-GTACTAAGTGCAGGCTACTATGCGTAC
65 CAGTACTAAGTGCAGGCTACTATGCGTAC
55989069 TAGATAGCTT
Statistics
Matches: 208, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
150 32 0.15
151 176 0.85
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGC
AGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTACAA
GCTACTACATGTATCAAATGG
Found at i:55989020 original size:101 final size:100
Alignment explanation
Indices: 55988675--55989020 Score: 240
Period size: 101 Copynumber: 3.4 Consensus size: 100
55988665 TAAGATGCTT
* * * *
55988675 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATAGTTAAGTTGCA--TG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCAAAT-G-TCAGAT-CACGTG
** * * ** ** * *
55988737 TGTAGTACTAAGTGGAGGCTACTATGCATACCCGACAAC
63 TGTAGTACTAAGTACAAGCTACTACGTGTACTAGA-TAG
* * * * *
55988776 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTATTACATGTA-TCAAATGGTTAGGTCACGTGT
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCAAAT-GTCAGATCACGTGT
** * *
55988839 GTAGTACTAAGTGTAGGGTACTACGTGTACTAGATAG
64 GTAGTACTAAGTACAAGCTACTACGTGTACTAGATAG
* * * ** ***
55988876 TTAGGTCACTTGTGCAATACTAAGTGCAGAATACTATGGGTACCCGACAACT-TCA-ATCACGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCC-A-AA-TGTCAGATCACGTG
*
55988939 TGTAGTACTAAGTACAAGCTACTACGTGTA-TCAGATGG
63 TGTAGTACTAAGTACAAGCTACTACGTGTACT-AGATAG
* *
55988977 TTAGTTCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACC
55989021 AGATTGTTGG
Statistics
Matches: 191, Mismatches: 45, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
99 3 0.02
100 36 0.19
101 145 0.76
102 4 0.02
103 2 0.01
104 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (100 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCAAATGTCAGATCACGTGTGT
AGTACTAAGTACAAGCTACTACGTGTACTAGATAG
Found at i:55989294 original size:16 final size:15
Alignment explanation
Indices: 55989273--55989302 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
55989263 GAATGGAGTA
55989273 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
55989289 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
55989303 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:55991545 original size:22 final size:22
Alignment explanation
Indices: 55991503--55991546 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
55991493 AATTATTTAC
* *
55991503 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
55991525 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
55991547 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:55991831 original size:40 final size:41
Alignment explanation
Indices: 55991771--55991989 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 41
55991761 AAACCAAGTA
* *
55991771 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* * * *
55991810 CCTTCGGGTCTTAGGCCGGATATCGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
55991850 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
55991890 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
55991930 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCA-AAA-G
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
55991968 CCTTC-GGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
55991990 CATTCGAATA
Statistics
Matches: 164, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
37 17 0.10
38 6 0.04
39 17 0.10
40 120 0.73
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:55999540 original size:22 final size:22
Alignment explanation
Indices: 55999498--55999541 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
55999488 AATTATTTAC
* *
55999498 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
55999520 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
55999542 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:55999989 original size:40 final size:40
Alignment explanation
Indices: 55999768--55999982 Score: 308
Period size: 40 Copynumber: 5.4 Consensus size: 40
55999758 AACCCAAGTA
* *
55999768 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* ** * *
55999807 CCTTCGGGTCTTAGGTCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
55999847 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
55999887 CCTTCGGGACTTAGCCCGGATATAGTCAATAACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
55999927 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
55999967 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
55999983 TGAATATCAT
Statistics
Matches: 157, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 12 0.08
40 144 0.92
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:56002296 original size:47 final size:44
Alignment explanation
Indices: 56002223--56002441 Score: 147
Period size: 46 Copynumber: 4.8 Consensus size: 44
56002213 GGCTATTGTA
* *
56002223 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTGTGA-G
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC---AACATTGAGACG
*
56002269 AGCCAGTGTAAGACCATGTCTGGGACATCGCATCAATATTGAGACG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAACATTGAGACG
* ** * **
56002315 AGTGCTAGTGTAAGACATGTCTGGGACATGCATCTTCCTCAAGACG
1 A--GCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACG
* * * * * *
56002361 TAAGTCGGTGTAAGATATGTCTGGGGCATGCATC-A-GTTACGAGATG
1 --AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATT--GAGACG
* *
56002407 TGTCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCA
56002442 GCACAGATAT
Statistics
Matches: 137, Mismatches: 24, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
44 12 0.09
45 19 0.14
46 61 0.45
47 28 0.20
48 17 0.12
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACG
Found at i:56019374 original size:22 final size:24
Alignment explanation
Indices: 56019329--56019376 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
56019319 TAATCTTTAA
56019329 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
56019353 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
56019375 TA
1 TA
56019377 GCATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:56025109 original size:79 final size:81
Alignment explanation
Indices: 56024973--56025189 Score: 241
Period size: 79 Copynumber: 2.7 Consensus size: 81
56024963 GAATCACGTA
* * ** * * *
56024973 CCTTCGGAATTTAA-CCGGATATAGCT-AC-TCGTTCAAATGCCTTTGGGACATAGCCC-GGTTA
1 CCTTCGGAACTTAACCCGGATATAG-TAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGGAT-
*
56025034 TAGTAACTCGCATAAATG
64 TAGTAACTCGCACAAATG
* * *
56025052 CCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGGATTA
1 CCTTCGGAACTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGGATTA
56025115 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
** *
56025131 CCTTCGGAACTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 CCTTCGGAACTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGG
56025190 ACATCATTCG
Statistics
Matches: 118, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 70 0.59
80 48 0.41
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGAACTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGGATTA
GTAACTCGCACAAATG
Found at i:56025190 original size:40 final size:40
Alignment explanation
Indices: 56024987--56025190 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
56024977 CGGAATTTAA
** * *
56024987 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
56025027 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
56025067 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56025106 CCGGGAT-TAGTAACTCGCACAAATGCCTTCGGAACTTAGT
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56025146 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
56025186 CCGGA
1 CCGGA
56025191 CATCATTCGA
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 37 0.26
40 97 0.68
41 8 0.06
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:56028893 original size:39 final size:40
Alignment explanation
Indices: 56028793--56028974 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
56028783 TCGAATGATG
* * *
56028793 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
56028833 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
56028873 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * ** **
56028911 CCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
56028952 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56028975 TGAGCGATTC
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 62 0.53
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:56028938 original size:78 final size:80
Alignment explanation
Indices: 56028793--56028974 Score: 201
Period size: 78 Copynumber: 2.3 Consensus size: 80
56028783 TCGAATGATG
* * * *
56028793 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
56028858 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
56028873 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* ***
56028935 CGTGTGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
56028952 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56028975 TGAGCGATTC
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.52
79 29 0.34
80 11 0.13
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:56032058 original size:39 final size:40
Alignment explanation
Indices: 56031958--56032139 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
56031948 TCGAATGATG
* * *
56031958 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
56031998 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
56032038 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
56032076 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
56032117 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56032140 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:56032103 original size:78 final size:80
Alignment explanation
Indices: 56031958--56032139 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
56031948 TCGAATGATG
* * * *
56031958 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
56032023 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
56032038 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
56032100 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
56032117 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56032140 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:56040034 original size:39 final size:40
Alignment explanation
Indices: 56039934--56040115 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
56039924 TCGAATGATG
* * *
56039934 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
56039974 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
56040014 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
56040052 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
56040093 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56040116 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:56040079 original size:78 final size:80
Alignment explanation
Indices: 56039934--56040115 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
56039924 TCGAATGATG
* * * *
56039934 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
56039999 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
56040014 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
56040076 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
56040093 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
56040116 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:56043334 original size:26 final size:26
Alignment explanation
Indices: 56043305--56043386 Score: 65
Period size: 27 Copynumber: 3.1 Consensus size: 26
56043295 TATAAACATA
56043305 TATCACATAGGGAAAAACAGTCATTT
1 TATCACATAGGGAAAAACAGTCATTT
** * *
56043331 TATCAGTTAGGGGCAAAACAATCATTT
1 TATCACATA-GGGAAAAACAGTCATTT
* * * * *
56043358 TACCTCATAAGTACAAAATAGTCATTT
1 TATCACATAGGGA-AAAACAGTCATTT
56043385 TA
1 TA
56043387 CCAATTAAGG
Statistics
Matches: 41, Mismatches: 13, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
26 8 0.20
27 33 0.80
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (26 bp):
TATCACATAGGGAAAAACAGTCATTT
Found at i:56043532 original size:18 final size:18
Alignment explanation
Indices: 56043509--56043554 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
56043499 CCATAACACG
56043509 GCCCATGTGGGCCCTCAC
1 GCCCATGTGGGCCCTCAC
56043527 GCCCATGTGGGCCCTCAC
1 GCCCATGTGGGCCCTCAC
56043545 GCCCATGTGG
1 GCCCATGTGG
56043555 CCCATAAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.11, C:0.41, G:0.30, T:0.17
Consensus pattern (18 bp):
GCCCATGTGGGCCCTCAC
Found at i:56048902 original size:24 final size:25
Alignment explanation
Indices: 56048868--56048935 Score: 97
Period size: 23 Copynumber: 2.8 Consensus size: 25
56048858 AATATATCAA
*
56048868 CTCATAAGAGCTTACT-ATTCTCAG
1 CTCATAGGAGCTTACTGATTCTCAG
56048892 CTCATAGGAGCTTACTGA-T-TCAG
1 CTCATAGGAGCTTACTGATTCTCAG
*
56048915 CTCGTAGGAGCTTACTGATTC
1 CTCATAGGAGCTTACTGATTC
56048936 AGCTCGTCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
23 21 0.54
24 17 0.44
25 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (25 bp):
CTCATAGGAGCTTACTGATTCTCAG
Found at i:56048922 original size:23 final size:23
Alignment explanation
Indices: 56048875--56048942 Score: 102
Period size: 23 Copynumber: 2.9 Consensus size: 23
56048865 CAACTCATAA
*
56048875 GAGCTTACT-ATTCTCAGCTCATAG
1 GAGCTTACTGA-T-TCAGCTCGTAG
56048899 GAGCTTACTGATTCAGCTCGTAG
1 GAGCTTACTGATTCAGCTCGTAG
56048922 GAGCTTACTGATTCAGCTCGT
1 GAGCTTACTGATTCAGCTCGT
56048943 CAAAGCTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
23 31 0.74
24 10 0.24
25 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCGTAG
Found at i:56048949 original size:23 final size:23
Alignment explanation
Indices: 56048888--56048952 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
56048878 CTTACTATTC
* *
56048888 TCAGCTCATAGGAGCTTACTGAT
1 TCAGCTCGTAGAAGCTTACTGAT
*
56048911 TCAGCTCGTAGGAGCTTACTGAT
1 TCAGCTCGTAGAAGCTTACTGAT
56048934 TCAGCTCGTCA-AAGCTTAC
1 TCAGCTCGT-AGAAGCTTAC
56048953 CGTTTTAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (23 bp):
TCAGCTCGTAGAAGCTTACTGAT
Found at i:56050446 original size:5 final size:5
Alignment explanation
Indices: 56050431--56050462 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
56050421 CTTCCTCAAT
*
56050431 TCTTC TATTC TCTTC TCTTC TCTTC TCTTC TC
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TC
56050463 ACTCTCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.03, C:0.38, G:0.00, T:0.59
Consensus pattern (5 bp):
TCTTC
Found at i:56051833 original size:18 final size:18
Alignment explanation
Indices: 56051807--56051907 Score: 103
Period size: 18 Copynumber: 5.6 Consensus size: 18
56051797 ATGACTTCTA
* *
56051807 TACTATTACTGCACTAAT
1 TACTGTTACTGCACTGAT
*
56051825 TACTGTTACTACACTGAT
1 TACTGTTACTGCACTGAT
*
56051843 TACTGTTACTGTACTGAT
1 TACTGTTACTGCACTGAT
* * *
56051861 TATTGTTACTGTACCGAT
1 TACTGTTACTGCACTGAT
** *
56051879 TACTGTTACAACACTGTT
1 TACTGTTACTGCACTGAT
*
56051897 TATTGTTACTG
1 TACTGTTACTG
56051908 TAATAGGCCA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:56059025 original size:18 final size:18
Alignment explanation
Indices: 56058967--56059053 Score: 111
Period size: 18 Copynumber: 4.8 Consensus size: 18
56058957 AGGACTTCTA
*
56058967 TACTGTTACTGCACTTAT
1 TACTGTTACTGCACTGAT
* * *
56058985 TACTATTAATGCACCGAT
1 TACTGTTACTGCACTGAT
56059003 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
* **
56059021 TACTGTTACTACACAAAT
1 TACTGTTACTGCACTGAT
56059039 TACTGTTACTGCACT
1 TACTGTTACTGCACT
56059054 ATTTATTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:56063650 original size:19 final size:19
Alignment explanation
Indices: 56063626--56063663 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
56063616 TTGAGATTGC
*
56063626 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
56063645 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
56063664 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:56071599 original size:28 final size:28
Alignment explanation
Indices: 56071530--56071630 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
56071520 GACAAGATTG
* * * *
56071530 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
56071560 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
56071588 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
56071617 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
56071631 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:56078622 original size:44 final size:44
Alignment explanation
Indices: 56078563--56081098 Score: 3583
Period size: 44 Copynumber: 58.4 Consensus size: 44
56078553 AATCCAAGAT
* * *
56078563 GATTTAGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56078607 GATTTGGCGTTTCTGTAGCGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
56078651 GATTTGGCGTGTCTGTAGCAACGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56078695 GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
56078735 GATTTGGCATCTCTGTAGCGACGGAGAGCAGATCAAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56078779 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * **
56078823 GATTTGGCGTCTCCGTAGCAGTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56078867 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56078907 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * * *
56078951 GATTTGGCGTATCTGTAACGACAGAGGGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56078995 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
56079039 GATTTAGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079083 GATTTGGCATCTCCGTAGCGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079127 AATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56079171 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56079211 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079255 GATTTGGCGTATCTGTAGCGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079299 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56079343 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
56079387 GATTTGGCGTCTCCATAGCGGCGGAGAGAAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079431 GATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079475 GATTTGGCGTCTCCGTAGCAGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079519 GATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079563 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56079603 GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
56079647 GATTTGGTGTCTCTGTAGTAGCGGAGAGCAGATAGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56079691 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079735 GATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * **
56079779 GATTTGGCGTCTCCGTAGCAGTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079823 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079863 GATTTGGCATCTCTGTAGCGG-GAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCG-GAGAGCAGATCGAAGATAACA
* * * * * * *
56079907 GATTTGGCGTATCTGTAACGACAGAGGGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56079951 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
56079995 GATTTAGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080039 GATTTGGCATCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080083 GATTTGGC-TCTCTGTAGTGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080126 AATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56080170 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080210 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080254 GATTTGGCGTATCTGTAGCGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56080298 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56080342 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
56080386 GATTTGGCGTCTCCATAGCGGCGGAGAGAAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080430 GATTTGGCGTCTCCGTAGCGGCGGAGAACAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080474 GATTTGGCGTCTCCGTAGCGGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080518 GATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56080562 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080602 GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
56080646 GATTTGGTGTCTCTGTAGTAGCGGAGAGCAGATAGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080690 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56080734 GATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
56080778 GATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
56080822 AATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCTAAGGTAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080866 GATTTGGTGTCTTTGTAGCTGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080906 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56080950 GATTTGGCGTATCTATAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56080994 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56081038 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
56081082 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
56081099 TTAGACGGGG
Statistics
Matches: 2226, Mismatches: 231, Indels: 70
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.00
40 292 0.13
43 39 0.02
44 1894 0.85
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:56079162 original size:304 final size:305
Alignment explanation
Indices: 56078563--56081098 Score: 3436
Period size: 304 Copynumber: 8.3 Consensus size: 305
56078553 AATCCAAGAT
* * * *
56078563 GATTTAGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTTTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* * ** *
56078628 CGGAGAGCAGATCAAAGATAACAGATTTGGCGTGTCTGTAGCAACGGAGAGTAGATCGAAGATAA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * *
56078693 CAGATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * * *
56078754 GACGGAGAGCAGATCAAAAATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
193 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
* **
56078819 AACAGATTTGGCGTCTCCGTAGCAGTAGAGAGCAGATCGAAGATAACA
258 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56078867 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-GATTTGGCATCTCTGTAGCGGCAG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGG
* * * * * * *
56078931 AGAGCAGATCGAAGATAACAGATTTGGCGTATCTGTAACGACAGAGGGCAGATCAAAGATAATAG
66 AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
* * *
56078996 ATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTAGCGTCTCCGTAGCGGC
131 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC
* * * *
56079061 AGAGAGCAGATCGAAGATAATAGATTTGGCATCTCCGTAGCGGCGGAGAGCAGATCAAAGATAAC
196 GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAAC
* * * *
56079126 AAATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
261 AGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
56079171 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-GATTTGGCATCTCTGTAGCGGCAG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGG
* * *
56079235 AGAGCAGATCGAAGATAACAGATTTGGCGTATCTGTAGCGACAGAGAGCAGATCGAAGATAACAG
66 AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
* *
56079300 ATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGGC
131 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC
* * *
56079365 GGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCCATAGCGGCGGAGAGAAGATCGAAGATAAC
196 GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAAC
* *
56079430 AGATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCAAAGATAACA
261 AGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
56079475 GATTTGGCGTCTCCGTAGCAGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGTGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* *
56079540 CGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGAT--
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * *
56079603 --GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACAGATTTGGTGTCTCTGTAGT
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
56079666 AGCGGAGAGCAGATAGAAGATAACAGATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGAT
193 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
56079731 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
258 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * ** *
56079779 GATTTGGCGTCTCCGTAGCAGTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
*
56079844 CGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG-GAGAGAGCAGATCGAAGATA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCG-GAGAGCAGATCGAAGATA
* * * * * * *
56079904 ACAGATTTGGCGTATCTGTAACGACAGAGGGCAGATCAAAGATAATAGATTTGGCGTCTCTGTAG
127 ACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAG
* * *
56079969 CAGCGGAGAGCAGATCGAAGATAACAGATTTAGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGA
192 CGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGA
* *
56080034 TAATAGATTTGGCATCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
257 TAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080083 GATTTGGC-TCTCTGTAGTGGCGGAGAGCAGATCAAAGATAACAAATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* *
56080147 CAGAGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT--
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * *
56080210 --GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTATCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
56080273 GACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
193 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
* *
56080338 AACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
258 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
** * *
56080386 GATTTGGCGTCTCCATAGCGGCGGAGAGAAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* * * *
56080451 CGGAGAACAGATCAAAGATAACAGATTTGGCGTCTCCGTAGCGGTGGAGAGCAGATCGAAGATAA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * *
56080516 CAGATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * * * *
56080581 GGTGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGAT
193 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
* * ** *
56080642 AACAGATTTGGTGTCTCTGTAGTAGCGGAGAGCAGATAGAAGATAACA
258 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
56080690 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
*
56080755 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * * *
56080820 CAAATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCTAAGGTAACAGATTTGGTGTCTTTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * * *
56080885 TGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGAT
193 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGAT
* **
56080946 AACAGATTTGGCGTATCTATAGCGGCGGAGAGCAGATCGAAGATAACA
258 AACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
56080994 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGG
* *
56081059 CGAAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTGTA
63 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
56081099 TTAGACGGGG
Statistics
Matches: 2015, Mismatches: 194, Indels: 46
0.89 0.09 0.02
Matches are distributed among these distances:
299 1 0.00
300 150 0.07
303 231 0.11
304 1445 0.72
307 37 0.02
308 151 0.07
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (305 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGG
AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC
GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAAC
AGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:56081413 original size:9 final size:8
Alignment explanation
Indices: 56081389--56081433 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
56081379 AATACAACCC
56081389 AAAAT-AA
1 AAAATAAA
56081396 AAAATAAA
1 AAAATAAA
56081404 AAAATAAA
1 AAAATAAA
56081412 AAAATGAAGA
1 AAAAT-AA-A
*
56081422 AAAAGAAA
1 AAAATAAA
56081430 AAAA
1 AAAA
56081434 CCTAACCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
7 5 0.15
8 20 0.59
9 4 0.12
10 5 0.15
ACGTcount: A:0.84, C:0.00, G:0.07, T:0.09
Consensus pattern (8 bp):
AAAATAAA
Found at i:56082329 original size:2 final size:2
Alignment explanation
Indices: 56082322--56082349 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
56082312 TCTGTTTATG
56082322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
56082350 ATTTAGCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:56082644 original size:19 final size:19
Alignment explanation
Indices: 56082617--56082654 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
56082607 TTGAGATTGC
* *
56082617 CAACGTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
56082636 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
56082655 TATTCATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:56084143 original size:43 final size:42
Alignment explanation
Indices: 56084054--56084165 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
56084044 TAAGTTTACG
** *
56084054 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* * *
56084096 TGTAAGACCATAGT-TGGGCTATTGGCATTGATTTGAGATCCCA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATCCCA
* *
56084139 TGTAAGACCATTTCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
56084166 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:56089954 original size:25 final size:24
Alignment explanation
Indices: 56089923--56089987 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 24
56089913 GCTTACCATT
56089923 TTAGCTCAATAGAGCTTACTGTCCA
1 TTAGCTCAA-AGAGCTTACTGTCCA
* *
56089948 TTAGCTCAGGAGGAGCTTACTGTTCA
1 TTAGCTCA--AAGAGCTTACTGTCCA
56089974 -TAGCTCGAAAGAGC
1 TTAGCTC-AAAGAGC
56089988 AGAAATGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
24 5 0.15
25 14 0.41
26 14 0.41
27 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
TTAGCTCAAAGAGCTTACTGTCCA
Found at i:56098626 original size:27 final size:28
Alignment explanation
Indices: 56098596--56098695 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
56098586 TTTAGTTTAC
56098596 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
56098623 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
56098650 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
56098677 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
56098696 CCGATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.85
28 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:56098695 original size:54 final size:54
Alignment explanation
Indices: 56098596--56098702 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
56098586 TTTAGTTTAC
* * *
56098596 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
56098650 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
56098703 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:56098713 original size:54 final size:53
Alignment explanation
Indices: 56098598--56098714 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
56098588 TAGTTTACTA
* * * **
56098598 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTAC
* *
56098651 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTTAC
56098705 AGAATTACCG
1 A-AATTACCG
56098715 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
53 11 0.21
54 40 0.75
55 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTAC
Found at i:56098721 original size:27 final size:27
Alignment explanation
Indices: 56098691--56098902 Score: 259
Period size: 27 Copynumber: 7.9 Consensus size: 27
56098681 ATTACCAAAG
*
56098691 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
56098718 TACCC-CTAATTTATATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
56098745 TACCC-CTGATTTACATG-ATTATCGTTT
1 TACCCTC-GATTTACA-GAATTACCGTTT
*
56098772 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
56098799 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
56098826 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
56098853 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
56098880 TACCCTCGATTTATAAAATTACC
1 TACCCTCGATTTACAGAATTACC
56098903 AAAATACCCT
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 158 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:56098910 original size:27 final size:27
Alignment explanation
Indices: 56098880--56099019 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
56098870 ATTATTGTTT
*
56098880 TACCCTCGATTTATAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
56098907 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
56098934 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
56098961 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
56098988 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
56099015 TACCC
1 TACCC
56099020 CTGATTTACA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:56098927 original size:54 final size:54
Alignment explanation
Indices: 56098880--56099101 Score: 223
Period size: 54 Copynumber: 4.1 Consensus size: 54
56098870 ATTATTGTTT
*
56098880 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* * *
56098934 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* * * * ** * *
56098988 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* * * * ** *
56099042 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACCA-AAATACCCTTGGTTTGTAAAATTACCGAAA
56099098 TACC
1 TACC
56099102 TTTGGTTTGT
Statistics
Matches: 142, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.01
54 97 0.68
55 7 0.05
56 36 0.25
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
Found at i:56098927 original size:81 final size:81
Alignment explanation
Indices: 56098768--56098928 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 81
56098758 CATGATTATC
* ****
56098768 GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
1 GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTC
*
56098833 GATTTATAGAATTACT
66 GATTTATAAAATTACT
* * ** * *
56098849 GTTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTT
1 GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTC
* *
56098914 GGTTTGTAAAATTAC
66 GATTTATAAAATTAC
56098929 CAAAATACCC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.40
Consensus pattern (81 bp):
GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTC
GATTTATAAAATTACT
Found at i:56099036 original size:27 final size:28
Alignment explanation
Indices: 56098882--56099046 Score: 153
Period size: 27 Copynumber: 6.1 Consensus size: 28
56098872 TATTGTTTTA
56098882 CCCTCGATTTATAAAATTACCAAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
* * *
56098909 CCCTTGGTTTGTAAAATTACCAAAATAC
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
56098937 CCCTAG-TTTGTAAAATTACCAAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
* * * * *
56098963 CCCTTGGTTTGTGAAATTACCGAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
56098990 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
56099018 CCCT-GATTTACAAAGTTA-CAGAAATAC
1 CCCTCGATTTATAAAATTACCA-AAATAC
56099045 CC
1 CC
56099047 TTGACTTTCT
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.06
27 102 0.86
28 9 0.08
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (28 bp):
CCCTCGATTTATAAAATTACCAAAATAC
Found at i:56099043 original size:81 final size:81
Alignment explanation
Indices: 56098895--56099049 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
56098885 TCGATTTATA
*** *
56098895 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
56098960 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
56098976 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
56099038 GAAATACCCTTG
64 -AAATACCCTTG
56099050 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:56099097 original size:27 final size:27
Alignment explanation
Indices: 56099058--56099109 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
56099048 TGACTTTCTA
56099058 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
56099085 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
56099110 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:56099227 original size:27 final size:27
Alignment explanation
Indices: 56099163--56099227 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
56099153 ACCCCTAAAA
*
56099163 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
56099190 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
56099217 GGTAAAATGAC
1 GGTAAAATGAC
56099228 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:56100476 original size:9 final size:9
Alignment explanation
Indices: 56100464--56100520 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
56100454 TTTGATAAAC
56100464 ATGATATGT
1 ATGATATGT
*
56100473 ATGATATGCAC
1 ATGATATG--T
*
56100484 ATGACATGT
1 ATGATATGT
*
56100493 ATGATATGCAC
1 ATGATATG--T
56100504 ATGATATGT
1 ATGATATGT
56100513 ATGATATG
1 ATGATATG
56100521 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:56100487 original size:20 final size:20
Alignment explanation
Indices: 56100462--56100532 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
56100452 ATTTTGATAA
56100462 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
56100482 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
56100502 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
56100522 ACATGAGATGT
1 ACATGATATGT
56100533 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:56100509 original size:11 final size:11
Alignment explanation
Indices: 56100473--56100527 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
56100463 CATGATATGT
56100473 ATGATATGCAC
1 ATGATATGCAC
* *
56100484 ATGACATG--T
1 ATGATATGCAC
56100493 ATGATATGCAC
1 ATGATATGCAC
*
56100504 ATGATATG--T
1 ATGATATGCAC
56100513 ATGATATGCAC
1 ATGATATGCAC
56100524 ATGA
1 ATGA
56100528 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:56100657 original size:24 final size:24
Alignment explanation
Indices: 56100577--56100790 Score: 276
Period size: 24 Copynumber: 9.0 Consensus size: 24
56100567 GGAGGAAGTG
56100577 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
56100601 -TAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
56100624 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
56100647 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
56100671 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
56100695 -TAAAGGGCTTATGCCCTAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
56100718 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
56100741 CAAAAAGGGCTTTTGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
56100766 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
56100791 ATGATAAAGC
Statistics
Matches: 169, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
23 64 0.38
24 94 0.56
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:56100701 original size:71 final size:71
Alignment explanation
Indices: 56100577--56100769 Score: 325
Period size: 71 Copynumber: 2.7 Consensus size: 71
56100567 GGAGGAAGTG
*
56100577 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
*
56100641 AGTTAT
66 AGTGAT
*
56100647 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
56100712 AGTGAT
66 AGTGAT
** *
56100718 CAAAAGGGCTTATGCCCCAGTTACAAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAA
56100770 AGAGGCTAGG
Statistics
Matches: 116, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
70 25 0.22
71 91 0.78
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
AGTGAT
Found at i:56103919 original size:40 final size:40
Alignment explanation
Indices: 56103862--56104054 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
56103852 TTATTTGATG
* *
56103862 TGGAATGGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATCGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
56103902 TGGAATCGTATCCGGGCTTAAACACCCGCAGGCTTCGTGC
1 TGGAATCGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
56103942 TGGAATCGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATCGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
56103982 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTTGTGC
1 TGGAATCGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
56104022 TGGAAT-GACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATCG-TATCCGGGCTTAAAGACCCGCAGGCT
56104055 ATGCTAGATA
Statistics
Matches: 139, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 15 0.11
40 124 0.89
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TGGAATCGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:56110112 original size:29 final size:29
Alignment explanation
Indices: 56110079--56110209 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
56110069 TGACGAGATC
*
56110079 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
56110108 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
56110137 GGCACTAAGTGTGCCTGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
56110166 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
56110195 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
56110210 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:56113272 original size:25 final size:25
Alignment explanation
Indices: 56113244--56113291 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
56113234 TTATACCATG
* * *
56113244 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
56113269 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
56113292 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:56113394 original size:20 final size:20
Alignment explanation
Indices: 56113334--56113394 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
56113324 ATAAATGTGG
*
56113334 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
56113354 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
56113374 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
56113394 T
1 T
56113395 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:56113471 original size:24 final size:24
Alignment explanation
Indices: 56113444--56113562 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
56113434 GAGGAAGTGA
*
56113444 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
56113468 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
56113491 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
56113515 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
56113539 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
56113563 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
23 21 0.25
24 52 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:56113513 original size:47 final size:48
Alignment explanation
Indices: 56113444--56113562 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 48
56113434 GAGGAAGTGA
56113444 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* ** *
56113491 AAAAGGGCTTATGCCCTAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
56113539 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
56113563 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
47 42 0.67
48 11 0.17
49 10 0.16
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:56113789 original size:31 final size:31
Alignment explanation
Indices: 56113754--56113817 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
56113744 CGTTTACAGT
56113754 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
56113785 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
56113816 AA
1 AA
56113818 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:56132226 original size:26 final size:26
Alignment explanation
Indices: 56132156--56132226 Score: 65
Period size: 26 Copynumber: 2.8 Consensus size: 26
56132146 TATATAGCAA
* *
56132156 GAAGCTCATAAA-AGCC-ATAATCAG
1 GAAGCTCACAAAGAGCCTTTAATCAG
* * * * *
56132180 GAAGTTCACAGAGAACTTTTAATGAG
1 GAAGCTCACAAAGAGCCTTTAATCAG
56132206 GAAGCTCACAAAGAGCCTTTA
1 GAAGCTCACAAAGAGCCTTTA
56132227 GTCAAGAGCT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
24 9 0.26
25 2 0.06
26 23 0.68
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCTTTAATCAG
Found at i:56132417 original size:65 final size:64
Alignment explanation
Indices: 56132299--56132420 Score: 156
Period size: 65 Copynumber: 1.9 Consensus size: 64
56132289 AAGAACTGCG
* * *
56132299 GTTTTGTCTGCAACATATTCAAGATCACAACATAGCATAAAGCAGGACACTCACAAATAGTTGC
1 GTTTTGTCTGCAACATATGCAAGATCACAACAGAGCATAAAGCAGAACACTCACAAATAGTTGC
* * * *
56132363 GTTTGTGTCTGCAATATATGCAGGATCACAACAGATCATATAA-CAGAACGCTCACAAA
1 GTTT-TGTCTGCAACATATGCAAGATCACAACAGAGCATA-AAGCAGAACACTCACAAA
56132421 GAAATGCGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
64 4 0.08
65 43 0.88
66 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (64 bp):
GTTTTGTCTGCAACATATGCAAGATCACAACAGAGCATAAAGCAGAACACTCACAAATAGTTGC
Found at i:56134716 original size:35 final size:35
Alignment explanation
Indices: 56134676--56134747 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
56134666 TTTACATATG
56134676 TATCATATTATACACTTATGATTCAATTCAAATCA
1 TATCATATTATACACTTATGATTCAATTCAAATCA
56134711 TATCATATTATACACTTATGATTCAATTCAAATCA
1 TATCATATTATACACTTATGATTCAATTCAAATCA
56134746 TA
1 TA
56134748 CTCACATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (35 bp):
TATCATATTATACACTTATGATTCAATTCAAATCA
Found at i:56134995 original size:45 final size:45
Alignment explanation
Indices: 56134892--56135063 Score: 226
Period size: 45 Copynumber: 3.9 Consensus size: 45
56134882 CTGAATTCAT
* * * ** *
56134892 TCACCGACATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGAATC
* *
56134934 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCCTGAATAGAATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGAATC
*
56134979 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGAATC
56135024 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
56135064 ATACTGTGCG
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
42 9 0.08
43 14 0.12
44 9 0.08
45 83 0.72
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGAATC
Found at i:56135926 original size:47 final size:47
Alignment explanation
Indices: 56135874--56135966 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
56135864 AAAATTTTCT
56135874 TTAACTAAGTAACTTATCC-AGAAATATTAACG-GCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGA-AAATATTAA-GAGCAAATTTAACAAGC
56135921 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAG
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAG
56135967 TTTTAAATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
46 1 0.02
47 42 0.95
48 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAGC
Found at i:56142636 original size:45 final size:44
Alignment explanation
Indices: 56142472--56142634 Score: 224
Period size: 45 Copynumber: 3.7 Consensus size: 44
56142462 CTAAATTCAT
* * *
56142472 TCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGT-ATC
* *
56142514 TCACCGGTATTATAGCGTGCTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAGTATC
56142559 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATC
*
56142604 TCACCGGTATTATAGCCTGCTAGGCTCAAAG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAG
56142635 GCTTGAATAA
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
42 10 0.09
43 13 0.12
44 11 0.10
45 73 0.68
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATC
Found at i:56143511 original size:47 final size:47
Alignment explanation
Indices: 56143455--56143550 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
56143445 AAAATTTTCT
* *
56143455 TTAACTAAGTAACTTCTCCGGAAATAATAAGGGCAAATTCAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATAATAAGAGCAAATTCAACAAGC
* * *
56143502 TTAACTAAGTAACTTATTCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATAATAAGAGCAAATTCAACAAGC
56143549 TT
1 TT
56143551 TAAATTCAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATAATAAGAGCAAATTCAACAAGC
Found at i:56143977 original size:104 final size:104
Alignment explanation
Indices: 56143797--56144005 Score: 418
Period size: 104 Copynumber: 2.0 Consensus size: 104
56143787 GAACATTTAG
56143797 CTAGCTCAAACCTCACTCATCCACAATTACTCATTAAAACATGAAGACAACAACCATTCCCTTCA
1 CTAGCTCAAACCTCACTCATCCACAATTACTCATTAAAACATGAAGACAACAACCATTCCCTTCA
56143862 AATTCTTCCATAGCCGATTACTCATATCACCACACAATT
66 AATTCTTCCATAGCCGATTACTCATATCACCACACAATT
56143901 CTAGCTCAAACCTCACTCATCCACAATTACTCATTAAAACATGAAGACAACAACCATTCCCTTCA
1 CTAGCTCAAACCTCACTCATCCACAATTACTCATTAAAACATGAAGACAACAACCATTCCCTTCA
56143966 AATTCTTCCATAGCCGATTACTCATATCACCACACAATT
66 AATTCTTCCATAGCCGATTACTCATATCACCACACAATT
56144005 C
1 C
56144006 AAAATTTTGA
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 105 1.00
ACGTcount: A:0.36, C:0.33, G:0.05, T:0.26
Consensus pattern (104 bp):
CTAGCTCAAACCTCACTCATCCACAATTACTCATTAAAACATGAAGACAACAACCATTCCCTTCA
AATTCTTCCATAGCCGATTACTCATATCACCACACAATT
Found at i:56147022 original size:31 final size:31
Alignment explanation
Indices: 56146984--56147045 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
56146974 CGTCTAACCT
*
56146984 GACCATGTATCACACACGGCTAAGACACACG
1 GACCATGTATCACACACAGCTAAGACACACG
*
56147015 GACCATGTATCACACACAGCTGAGACACACG
1 GACCATGTATCACACACAGCTAAGACACACG
56147046 CTTGTGTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.32, G:0.19, T:0.13
Consensus pattern (31 bp):
GACCATGTATCACACACAGCTAAGACACACG
Found at i:56151473 original size:17 final size:19
Alignment explanation
Indices: 56151431--56151474 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
56151421 ATGAAATTTT
*
56151431 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
56151450 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
56151468 AA-TATTA
1 AATTATTA
56151475 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:56153319 original size:28 final size:28
Alignment explanation
Indices: 56153266--56153333 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
56153256 GCGTAGATCA
56153266 CGAAATTACCCCT-AAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
56153293 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
56153321 CGATA-TACCCCTA
1 CGAAATTACCCCTA
56153334 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:56161644 original size:43 final size:43
Alignment explanation
Indices: 56161583--56161666 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
56161573 TATGATTCTA
* * *
56161583 ATATGTGTTTACGAGTAAGACCATGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACGAGTAAGACCACGTCTAGGAC-GTTGGCATCG
56161626 ATATGTGATTAC-ATGTAAGACCACGTCTAGGACGTTGGCAT
1 ATATGTGATTACGA-GTAAGACCACGTCTAGGACGTTGGCAT
56161667 TGTACGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
ATATGTGATTACGAGTAAGACCACGTCTAGGACGTTGGCATCG
Found at i:56162509 original size:16 final size:16
Alignment explanation
Indices: 56162468--56162509 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
56162458 TATATTTCTA
56162468 AATTTTGG-TTATGCT
1 AATTTTGGTTTATGCT
* *
56162483 AAATTCGGTTTATGCT
1 AATTTTGGTTTATGCT
*
56162499 CATTTTGGTTT
1 AATTTTGGTTT
56162510 TATAGTCATG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (16 bp):
AATTTTGGTTTATGCT
Found at i:56165353 original size:31 final size:31
Alignment explanation
Indices: 56165318--56165400 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
56165308 CTTCCTGCAT
* *
56165318 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
56165349 TAAAATGCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
*
56165380 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
56165401 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.59, C:0.19, G:0.06, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:56165690 original size:24 final size:21
Alignment explanation
Indices: 56165645--56165684 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
56165635 CTCGTGCCTT
56165645 TGCCTCCCTCGCTGCTGCCGC
1 TGCCTCCCTCGCTGCTGCCGC
*
56165666 TGCCTCCCTCTCTGCTGCC
1 TGCCTCCCTCGCTGCTGCC
56165685 TCCGCTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.53, G:0.20, T:0.28
Consensus pattern (21 bp):
TGCCTCCCTCGCTGCTGCCGC
Found at i:56166126 original size:13 final size:14
Alignment explanation
Indices: 56166101--56166129 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
56166091 TGATGAATTG
56166101 AATTAAACAATTAT
1 AATTAAACAATTAT
56166115 AATTAAAC-ATTAT
1 AATTAAACAATTAT
56166128 AA
1 AA
56166130 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:56171329 original size:9 final size:9
Alignment explanation
Indices: 56171249--56171330 Score: 60
Period size: 9 Copynumber: 9.1 Consensus size: 9
56171239 TATGTATTAC
*
56171249 GTAAGTTAA
1 GTAAGTTAT
56171258 GTAAGCTT-T
1 GTAAG-TTAT
56171267 GTAAGTTAT
1 GTAAGTTAT
*
56171276 GCAAGTTAT
1 GTAAGTTAT
* *
56171285 GTTA-TGAT
1 GTAAGTTAT
* *
56171293 ATACATTTAT
1 GTA-AGTTAT
*
56171303 GTAAGGTAT
1 GTAAGTTAT
56171312 GTAAGTTAT
1 GTAAGTTAT
*
56171321 GTAACTTAT
1 GTAAGTTAT
56171330 G
1 G
56171331 ATATGATATA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
8 6 0.11
9 43 0.77
10 7 0.12
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:56171350 original size:13 final size:13
Alignment explanation
Indices: 56171332--56171361 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
56171322 TAACTTATGA
56171332 TATGATATATATT
1 TATGATATATATT
56171345 TATGATATATATT
1 TATGATATATATT
56171358 TATG
1 TATG
56171362 TATTATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:56171825 original size:3 final size:3
Alignment explanation
Indices: 56171813--56171843 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
56171803 AATAATAATA
*
56171813 ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
56171844 AAGCTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:56172313 original size:50 final size:51
Alignment explanation
Indices: 56172222--56172328 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
56172212 TAACATAACG
* * *
56172222 TATAAATGTTACGAGCTAAATTTGTTAAATTATGACTAAATTGACAGAATA
1 TATAAATATTACGAGCTAAATTTGTTAAATCAAGACTAAATTGACAGAATA
* * *
56172273 TATAAATATTACGA-TTTAATTTGTTAAATCAAGA-TCAAATTGATAGAATA
1 TATAAATATTACGAGCTAAATTTGTTAAATCAAGACT-AAATTGACAGAATA
56172323 TATAAA
1 TATAAA
56172329 CTTAAGATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
49 1 0.02
50 35 0.71
51 13 0.27
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (51 bp):
TATAAATATTACGAGCTAAATTTGTTAAATCAAGACTAAATTGACAGAATA
Found at i:56175279 original size:39 final size:38
Alignment explanation
Indices: 56175236--56175359 Score: 126
Period size: 39 Copynumber: 3.2 Consensus size: 38
56175226 GGGACTCAAC
*
56175236 CCGGATTTAGTAGCTTGCTCGAAAGCCTTGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTGGATCTTAGT
* * * *
56175275 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCC-TTGGATCTTAGT
*
56175315 CCGGATTTAGTCACTTAGCAC-AAAGCCTTGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTT-GGATCTTAGT
56175354 CCGGAT
1 CCGGAT
56175360 ATCATTCGAA
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
39 33 0.47
40 33 0.47
41 4 0.06
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (38 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTGGATCTTAGT
Found at i:56175316 original size:40 final size:39
Alignment explanation
Indices: 56175204--56175325 Score: 129
Period size: 40 Copynumber: 3.1 Consensus size: 39
56175194 GCCCGGTTAC
* **
56175204 AGTAACTCGCACGAATGCCTTCGGGA-CTCAACCCGGATTT
1 AGTAACTCGCACGAATGCC-TC-GGATCTTAGTCCGGATTT
* * * * *
56175244 AGTAGCTTGCTCGAAAGCCTTGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAATGCCTCGGATCTTAGTCCGGATTT
*
56175283 AGTAACTCGCACGTATGCCGTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAATGCC-TCGGATCTTAGTCCGGATTT
56175323 AGT
1 AGT
56175326 CACTTAGCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
38 3 0.05
39 26 0.39
40 37 0.56
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
AGTAACTCGCACGAATGCCTCGGATCTTAGTCCGGATTT
Found at i:56175319 original size:79 final size:79
Alignment explanation
Indices: 56175175--56175359 Score: 191
Period size: 79 Copynumber: 2.3 Consensus size: 79
56175165 GCTACACATT
* * *
56175175 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTT-GGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
56175239 GATTTAGT-AGCTT-GCT
63 GATTTAGTCA-CTTAGCA
* * * **
56175255 CGAAAGCCTT-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCCG
1 C-AAAGCCTTGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCCG
56175318 GATTTAGTCACTTAGCA
63 GATTTAGTCACTTAGCA
56175335 CAAAGCCTTGGGACTTAGCCCGGAT
1 CAAAGCCTTGGGACTTAGCCCGGAT
56175360 ATCATTCGAA
Statistics
Matches: 88, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
78 6 0.07
79 64 0.73
80 15 0.17
81 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (79 bp):
CAAAGCCTTGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGAT
TTAGTCACTTAGCA
Found at i:56177550 original size:16 final size:16
Alignment explanation
Indices: 56177529--56177561 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
56177519 TTGAGTGCTG
56177529 AGCATTAACAACAGAA
1 AGCATTAACAACAGAA
*
56177545 AGCATTAACAATAGAA
1 AGCATTAACAACAGAA
56177561 A
1 A
56177562 TCTGCATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (16 bp):
AGCATTAACAACAGAA
Found at i:56178065 original size:84 final size:84
Alignment explanation
Indices: 56177924--56178117 Score: 280
Period size: 84 Copynumber: 2.3 Consensus size: 84
56177914 AGTTTGTTTT
* * * *
56177924 CGGCATTTTTAGGATAGCACCACTAATTCCTAAACCGTGCCACATAAAACGACGTAGTTTTCATT
1 CGGCATTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATT
** *
56177989 CGGTTTCTCATATTCTTAG
66 CAATTTCTCATATTATTAG
* *
56178008 CGGCATTTATAAGATAGCGCCACTTATTCCTAAACCGCGCCACATAAAATGACGTAGTTTTCATT
1 CGGCATTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATT
*
56178073 CAATTTTTCATATTATTAG
66 CAATTTCTCATATTATTAG
* *
56178092 TGGCGTTTATAAGATAGCGCCACTAA
1 CGGCATTTATAAGATAGCGCCACTAA
56178118 ATCCACTACC
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 97 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (84 bp):
CGGCATTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATT
CAATTTCTCATATTATTAG
Found at i:56178180 original size:83 final size:84
Alignment explanation
Indices: 56177936--56178200 Score: 245
Period size: 84 Copynumber: 3.2 Consensus size: 84
56177926 GCATTTTTAG
* * * * * * * ** *
56177936 GATAGCACCACTAATTCCTAAACCGTGCCACATAAAACGACGTAGTTTTCATTCGGTTTCTCATA
1 GATAGCGCCACTAAATCCTAAACCGCGCAAAATAAAATGACGTAGTTTTCATACAATTTTTCATA
* *
56178001 TTCTTAGCGGCATTTATAA
66 TTATTAGCGGCGTTTATAA
* * * * *
56178020 GATAGCGCCACTTATTCCTAAACCGCGCCACATAAAATGACGTAGTTTTCATTCAATTTTTCATA
1 GATAGCGCCACTAAATCCTAAACCGCGCAAAATAAAATGACGTAGTTTTCATACAATTTTTCATA
*
56178085 TTATTAGTGGCGTTTATAA
66 TTATTAGCGGCGTTTATAA
*
56178104 GATAGCGCCACTAAATCC-ACTACC-CGCAAAATAAAATGACG-ACG-TTTCAATACAATTTCTT
1 GATAGCGCCACTAAATCCTA-AACCGCGCAAAATAAAATGACGTA-GTTTTC-ATACAATTT-TT
*
56178165 -ATACTT-TTAGCGGCGTTTATGA
62 CATA-TTATTAGCGGCGTTTATAA
**
56178187 CCTAGCGCCACTAA
1 GATAGCGCCACTAA
56178201 CTCCGCTGTC
Statistics
Matches: 156, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
82 5 0.03
83 54 0.35
84 97 0.62
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (84 bp):
GATAGCGCCACTAAATCCTAAACCGCGCAAAATAAAATGACGTAGTTTTCATACAATTTTTCATA
TTATTAGCGGCGTTTATAA
Found at i:56178469 original size:15 final size:15
Alignment explanation
Indices: 56178449--56178479 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56178439 AATCCAAAAA
56178449 CCAATACACTAAACC
1 CCAATACACTAAACC
*
56178464 CCAATACCCTAAACC
1 CCAATACACTAAACC
56178479 C
1 C
56178480 TGTAGACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (15 bp):
CCAATACACTAAACC
Found at i:56178522 original size:49 final size:49
Alignment explanation
Indices: 56178446--56178569 Score: 162
Period size: 49 Copynumber: 2.5 Consensus size: 49
56178436 ATTAATCCAA
* * *
56178446 AAACC-AATACACTAA-ACCCCAATACCCTAAACCCTGTAGACTAAACCCT
1 AAACCAAATACAC-AATACCCTAA-ACCCTAAACACTATAGACTAAACCCT
*
56178495 AAACCAAATACACAATTCCCTAAACCCTAAACACTATAGACTAAACCCT
1 AAACCAAATACACAATACCCTAAACCCTAAACACTATAGACTAAACCCT
* *
56178544 AAACCCAATACCCAATACCCTAAACC
1 AAACCAAATACACAATACCCTAAACC
56178570 TTATAAACTA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 54 0.82
50 12 0.18
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.16
Consensus pattern (49 bp):
AAACCAAATACACAATACCCTAAACCCTAAACACTATAGACTAAACCCT
Found at i:56178528 original size:21 final size:21
Alignment explanation
Indices: 56178465--56178568 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
56178455 CACTAAACCC
** *
56178465 CAATACCCTAAACCCTGTAGA
1 CAATACCCTAAACCCTAAACA
*
56178486 CTAA-ACCCTAAA-CCAAATACA
1 C-AATACCCTAAACCCTAA-ACA
*
56178507 CAATTCCCTAAACCCTAAACA
1 CAATACCCTAAACCCTAAACA
* ** *
56178528 CTATAGACTAAACCCTAAACC
1 CAATACCCTAAACCCTAAACA
56178549 CAATACCC-AATACCCTAAAC
1 CAATACCCTAA-ACCCTAAAC
56178569 CTTATAAACT
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
20 6 0.09
21 52 0.81
22 6 0.09
ACGTcount: A:0.44, C:0.36, G:0.03, T:0.17
Consensus pattern (21 bp):
CAATACCCTAAACCCTAAACA
Found at i:56178564 original size:42 final size:42
Alignment explanation
Indices: 56178518--56178597 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
56178508 AATTCCCTAA
*
56178518 ACCCTAAACAC-TATAGACTAAACCCTAAACCCAATACCCAAT
1 ACCCTAAAC-CTTATAAACTAAACCCTAAACCCAATACCCAAT
**
56178560 ACCCTAAACCTTATAAACTAAATTCTAAACCCAATACC
1 ACCCTAAACCTTATAAACTAAACCCTAAACCCAATACC
56178598 TTAAACCTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (42 bp):
ACCCTAAACCTTATAAACTAAACCCTAAACCCAATACCCAAT
Found at i:56178588 original size:49 final size:49
Alignment explanation
Indices: 56178446--56178591 Score: 145
Period size: 49 Copynumber: 3.0 Consensus size: 49
56178436 ATTAATCCAA
* * **
56178446 AAACC-AATACACTAA-ACCCCAATACCCTAAACCCTGTAGACTAAACCCT
1 AAACCAAATACAC-AATACCCTAA-ACCCTAAACACTAAAGACTAAACCCT
* *
56178495 AAACCAAATACACAATTCCCTAAACCCTAAACACTATAGACTAAACCCT
1 AAACCAAATACACAATACCCTAAACCCTAAACACTAAAGACTAAACCCT
* * * **
56178544 AAACCCAATACCCAATACCCTAAACCTTATAA-ACTAAATTCTAAACCC
1 AAACCAAATACACAATACCCTAAACCCTA-AACACTAAAGACTAAACCC
56178592 AATACCTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 69 0.83
50 14 0.17
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.18
Consensus pattern (49 bp):
AAACCAAATACACAATACCCTAAACCCTAAACACTAAAGACTAAACCCT
Found at i:56179669 original size:28 final size:27
Alignment explanation
Indices: 56179645--56179726 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
56179635 AGTCACCAAT
56179645 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
* * *
56179673 ACAAATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGTGCCACCAGA
56179700 ACAGATAATTTGTGGCA-TAGCCACCAG
1 ACAGAT-ATTTGTGGCAGT-GCCACCAG
56179727 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:56179879 original size:28 final size:28
Alignment explanation
Indices: 56179832--56179922 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
56179822 AAATTAACCC
* *
56179832 TAGGGGTATAGA-GGTCATTTTGCATATA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
56179860 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
56179888 TA-GGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
56179915 TAGGGGTA
1 TAGGGGTA
56179923 CTCTAGTACA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
27 28 0.47
28 31 0.53
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:56179901 original size:27 final size:27
Alignment explanation
Indices: 56179835--56179919 Score: 127
Period size: 27 Copynumber: 3.1 Consensus size: 27
56179825 TTAACCCTAG
* *
56179835 GGGTATAGA-GGTCATTTTGCATATATA
1 GGGTATA-ATGGTAATTTTGCATACATA
56179862 GGGGTATAATGGTAATTTTGCATACATA
1 -GGGTATAATGGTAATTTTGCATACATA
56179890 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
56179917 GGG
1 GGG
56179920 GTACTCTAGT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
27 31 0.57
28 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (27 bp):
GGGTATAATGGTAATTTTGCATACATA
Found at i:56187599 original size:40 final size:41
Alignment explanation
Indices: 56187505--56187603 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 41
56187495 GATGTCTGGG
*
56187505 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGA
* * ** *
56187545 CTAAGAT-CCAAAGGCATTTGTG-TGAGTTCCCAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGA
*
56187585 TTAAGTCCCGAAGGCATTT
1 CTAAGTCCCGAAGGCATTT
56187604 ATGCGAGCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
39 1 0.02
40 40 0.83
41 7 0.15
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (41 bp):
CTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGA
Found at i:56190821 original size:55 final size:56
Alignment explanation
Indices: 56190756--56190870 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
56190746 AGCATGGTTG
* *
56190756 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
56190812 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
56190867 CCAG
1 CCAG
56190871 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:56190833 original size:27 final size:27
Alignment explanation
Indices: 56190781--56190870 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
56190771 GTGACAGAGT
56190781 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
56190810 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
56190837 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
56190865 CACCAG
1 CACCAG
56190871 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:56191023 original size:28 final size:28
Alignment explanation
Indices: 56190976--56191095 Score: 206
Period size: 28 Copynumber: 4.3 Consensus size: 28
56190966 AAATTAACCC
*
56190976 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
56191004 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
56191032 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
56191060 TAGGGGTATAATGGTAATTTTTCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
56191088 TAGGGGTA
1 TAGGGGTA
56191096 CTCTAGTACA
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
27 1 0.01
28 88 0.99
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:56191359 original size:8 final size:8
Alignment explanation
Indices: 56191343--56191374 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
56191333 CCCAAAATAC
56191343 CGGCTTTT
1 CGGCTTTT
*
56191351 CGGCATTT
1 CGGCTTTT
56191359 CGGCTTTT
1 CGGCTTTT
56191367 CGGCTTTT
1 CGGCTTTT
56191375 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:56193199 original size:15 final size:14
Alignment explanation
Indices: 56193175--56193230 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
56193165 TTTTTACGAC
* *
56193175 TTTAGGGTTTATGA
1 TTTAGAGTTTAAGA
*
56193189 TTTAAGAGTTTAGGA
1 TTT-AGAGTTTAAGA
*
56193204 TTTATAGTTTAAGA
1 TTTAGAGTTTAAGA
56193218 TTT-GAGATTTAAG
1 TTTAGAG-TTTAAG
56193231 GCCTATAGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.06
14 21 0.60
15 12 0.34
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.46
Consensus pattern (14 bp):
TTTAGAGTTTAAGA
Found at i:56193200 original size:22 final size:22
Alignment explanation
Indices: 56193175--56193217 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
56193165 TTTTTACGAC
*
56193175 TTTAGGGTTTAT-GATTTAAGAG
1 TTTAGGATTTATAG-TTTAAGAG
56193197 TTTAGGATTTATAGTTTAAGA
1 TTTAGGATTTATAGTTTAAGA
56193218 TTTGAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (22 bp):
TTTAGGATTTATAGTTTAAGAG
Found at i:56193909 original size:74 final size:75
Alignment explanation
Indices: 56193755--56193909 Score: 170
Period size: 74 Copynumber: 2.1 Consensus size: 75
56193745 AAAAAGCGCA
* * * * * *
56193755 GCTAATGCCACTAAATCTCAAAGTAAAATGACGTCGTTTGGCTTAATCTTTTTGCGGCGTTTCTG
1 GCTAATGCCACTAAAGCTCAAAGTAAAACGACGTCGTTCGGATTAATATTTTAGCGGCGTTTCTG
*
56193820 ATTAAGTGCC
66 ATTAAATGCC
* * * * *
56193830 ACTAATGCCACTAAAGCTC-AATTTAAACGACGTCGTTCGGATTAATATTTTAGCGGC-TTTTTT
1 GCTAATGCCACTAAAGCTCAAAGTAAAACGACGTCGTTCGGATTAATATTTTAGCGGCGTTTCTG
*
56193893 TTGTAAATGCC
66 AT-TAAATGCC
56193904 GCTAAT
1 GCTAAT
56193910 ACTCTATCTA
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
73 5 0.08
74 43 0.66
75 17 0.26
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (75 bp):
GCTAATGCCACTAAAGCTCAAAGTAAAACGACGTCGTTCGGATTAATATTTTAGCGGCGTTTCTG
ATTAAATGCC
Found at i:56203077 original size:40 final size:40
Alignment explanation
Indices: 56202950--56203079 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
56202940 ATGCTGGAAA
* *
56202950 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
56202990 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
56203030 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
56203070 TTATATCCGG
1 TTATATCCGG
56203080 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:56207994 original size:13 final size:13
Alignment explanation
Indices: 56207976--56208002 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56207966 TAAACAATCG
56207976 CACACGGGCGTGT
1 CACACGGGCGTGT
56207989 CACACGGGCGTGT
1 CACACGGGCGTGT
56208002 C
1 C
56208003 CCTGGCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Done.