Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 206 of 444
Found at i:57349900 original size:30 final size:30
Alignment explanation
Indices: 57349806--57349893 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
57349796 TAAACTAAAA
* * *
57349806 TGAGCTAAGCTTTAGTTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
57349836 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
57349866 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
57349894 TATGAGCAAG
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:57352209 original size:30 final size:30
Alignment explanation
Indices: 57352139--57352220 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
57352129 TTTTGTTTCA
* *
57352139 ATTTCTTTTTCATCTTCTTTTTCACTCTCAG
1 ATTTCTTTTTCTTC-TCTTTTTCAATCTCAG
57352170 ATTTC-TTTTCGTTCTCTTTTTCAATCTCA-
1 ATTTCTTTTTC-TTCTCTTTTTCAATCTCAG
* *
57352199 TTTTCTTTTTCATTTTCTTTTT
1 ATTTCTTTTTC-TTCTCTTTTT
57352221 ACTTTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 4 0.09
30 33 0.75
31 7 0.16
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (30 bp):
ATTTCTTTTTCTTCTCTTTTTCAATCTCAG
Found at i:57352220 original size:18 final size:18
Alignment explanation
Indices: 57352171--57352226 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
57352161 CACTCTCAGA
* *
57352171 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
57352188 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
57352206 TTTCATTTTCTTTTTACTT
1 TTTCATTTTCATTTT-CTT
57352225 TT
1 TT
57352227 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:57352227 original size:12 final size:12
Alignment explanation
Indices: 57352196--57352220 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57352186 TTTTTCAATC
57352196 TCATTTTCTTTT
1 TCATTTTCTTTT
57352208 TCATTTTCTTTT
1 TCATTTTCTTTT
57352220 T
1 T
57352221 ACTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:57352299 original size:5 final size:5
Alignment explanation
Indices: 57352289--57352345 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
57352279 CTTTTGCCTC
*
57352289 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTTT TCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TC-TTT TC-TTT TCTTT
57352336 TCTTT TCTTT
1 TCTTT TCTTT
57352346 GTTTTCTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 14 0.31
7 1 0.02
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:57355008 original size:30 final size:30
Alignment explanation
Indices: 57354914--57355001 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
57354904 TAAACTAAAA
* *
57354914 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
57354944 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
*
57354974 TGAGCTAAGGTTTAGCTCGTGAGTTGAA
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
57355002 TATGAGCAAG
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:57356790 original size:95 final size:95
Alignment explanation
Indices: 57356627--57356816 Score: 380
Period size: 95 Copynumber: 2.0 Consensus size: 95
57356617 GTGGTTCCAA
57356627 AACCATGAATCCGAAGTTGAAAAAGAAAATTAAAATTATTTTGATTTAGTTTTAGTGTTTATATT
1 AACCATGAATCCGAAGTTGAAAAAGAAAATTAAAATTATTTTGATTTAGTTTTAGTGTTTATATT
57356692 ATGATTGCATAATTGTGTGAAAATTTTGTT
66 ATGATTGCATAATTGTGTGAAAATTTTGTT
57356722 AACCATGAATCCGAAGTTGAAAAAGAAAATTAAAATTATTTTGATTTAGTTTTAGTGTTTATATT
1 AACCATGAATCCGAAGTTGAAAAAGAAAATTAAAATTATTTTGATTTAGTTTTAGTGTTTATATT
57356787 ATGATTGCATAATTGTGTGAAAATTTTGTT
66 ATGATTGCATAATTGTGTGAAAATTTTGTT
57356817 GCAAAATTTT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (95 bp):
AACCATGAATCCGAAGTTGAAAAAGAAAATTAAAATTATTTTGATTTAGTTTTAGTGTTTATATT
ATGATTGCATAATTGTGTGAAAATTTTGTT
Found at i:57358115 original size:65 final size:68
Alignment explanation
Indices: 57357987--57358115 Score: 149
Period size: 65 Copynumber: 1.9 Consensus size: 68
57357977 GAGATGTATC
* *
57357987 CCATGTAGACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTAGCATGTGTGATCCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATGTAGCTAGGTAGCATGGGTGATACCAAGTGA
57358052 AGGACA
63 AGGACA
* * *
57358058 CCATGTAGA-AAGAGAGCTAC-GAGATAAAT-TGGCTAGGTCA-CATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAATGTAGCTAGGT-AGCATGGGTGATACCAAGTG
57358116 TTCACCATGT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
65 22 0.42
66 10 0.19
70 11 0.21
71 9 0.17
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.20
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGTAGCTAGGTAGCATGGGTGATACCAAGTGAAGG
ACA
Found at i:57359762 original size:10 final size:10
Alignment explanation
Indices: 57359746--57359817 Score: 85
Period size: 11 Copynumber: 6.9 Consensus size: 10
57359736 AAAAGTTTCA
57359746 AAAAAAATTC
1 AAAAAAATTC
57359756 AAGAAAAATTC
1 AA-AAAAATTC
57359767 AAAAAAAGTTC
1 AAAAAAA-TTC
57359778 AAAAAAATT-
1 AAAAAAATTC
57359787 AAAAAAATTC
1 AAAAAAATTC
57359797 GAAAAAATATT-
1 -AAAAAA-ATTC
57359808 AGAAAAAATT
1 A-AAAAAATT
57359818 TTGAAAAAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
9 9 0.16
10 13 0.23
11 31 0.55
12 3 0.05
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:57359772 original size:21 final size:19
Alignment explanation
Indices: 57359746--57359817 Score: 90
Period size: 21 Copynumber: 3.5 Consensus size: 19
57359736 AAAAGTTTCA
57359746 AAAAAAATTCAAGAAAAATT
1 AAAAAAATTCAA-AAAAATT
57359766 CAAAAAAAGTTCAAAAAAATT
1 -AAAAAAA-TTCAAAAAAATT
57359787 AAAAAAATTCGAAAAAATATT
1 AAAAAAATTC-AAAAAA-ATT
57359808 AGAAAAAATT
1 A-AAAAAATT
57359818 TTGAAAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.06
20 13 0.28
21 18 0.38
22 13 0.28
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (19 bp):
AAAAAAATTCAAAAAAATT
Found at i:57359802 original size:12 final size:11
Alignment explanation
Indices: 57359732--57359817 Score: 81
Period size: 11 Copynumber: 7.9 Consensus size: 11
57359722 CAAGTAAGTG
57359732 AAAAAAAAGTTTC
1 AAAAAAAA--TTC
57359745 AAAAAAAATTC
1 AAAAAAAATTC
*
57359756 AAGAAAAATTC
1 AAAAAAAATTC
*
57359767 AAAAAAAGTTC
1 AAAAAAAATTC
57359778 -AAAAAAATT-
1 AAAAAAAATTC
57359787 -AAAAAAATTC
1 AAAAAAAATTC
*
57359797 GAAAAAATATT-
1 -AAAAAAAATTC
*
57359808 AGAAAAAATT
1 AAAAAAAATT
57359818 TTGAAAAAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
9 9 0.14
10 16 0.25
11 22 0.35
12 8 0.13
13 8 0.13
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:57361904 original size:21 final size:21
Alignment explanation
Indices: 57361875--57361916 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
57361865 AGAGCAACGT
57361875 GAAAAACCTCCTGAAGTAGTC
1 GAAAAACCTCCTGAAGTAGTC
*
57361896 GAAAGACCTCCTGAAGTAGTC
1 GAAAAACCTCCTGAAGTAGTC
57361917 CAACCTAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (21 bp):
GAAAAACCTCCTGAAGTAGTC
Found at i:57363487 original size:27 final size:27
Alignment explanation
Indices: 57363457--57363508 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
57363447 AGATTGTAAA
*
57363457 AAAATAAAAGA-AAAAAATAAGAAAAAG
1 AAAACAAAAGAGAAAAAA-AAGAAAAAG
*
57363484 AAAACAAAAGAGAACAAAAAGAAAA
1 AAAACAAAAGAGAAAAAAAAGAAAA
57363509 CCAGCAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.81, C:0.04, G:0.12, T:0.04
Consensus pattern (27 bp):
AAAACAAAAGAGAAAAAAAAGAAAAAG
Found at i:57363492 original size:21 final size:21
Alignment explanation
Indices: 57363468--57363509 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
57363458 AAATAAAAGA
* *
57363468 AAAAAATAAGAAAAAGAAAAC
1 AAAAAAGAACAAAAAGAAAAC
*
57363489 AAAAGAGAACAAAAAGAAAAC
1 AAAAAAGAACAAAAAGAAAAC
57363510 CAGCAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.79, C:0.07, G:0.12, T:0.02
Consensus pattern (21 bp):
AAAAAAGAACAAAAAGAAAAC
Found at i:57363536 original size:8 final size:9
Alignment explanation
Indices: 57363462--57363533 Score: 51
Period size: 9 Copynumber: 7.7 Consensus size: 9
57363452 GTAAAAAAAT
57363462 AAAAGAA-A
1 AAAAGAAGA
*
57363470 AAAATAAGA
1 AAAAGAAGA
*
57363479 AAAAGAAAA
1 AAAAGAAGA
57363488 CAAAAG-AGA
1 -AAAAGAAGA
57363497 ACAAA-AAGA
1 A-AAAGAAGA
57363506 AAACCAGCAAAGA
1 AAA--AG--AAGA
57363519 AAAAGAAGA
1 AAAAGAAGA
57363528 AAAAGA
1 AAAAGA
57363534 GAAGGAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 17
0.71 0.06 0.24
Matches are distributed among these distances:
8 9 0.18
9 27 0.53
10 6 0.12
11 2 0.04
13 7 0.14
ACGTcount: A:0.76, C:0.07, G:0.15, T:0.01
Consensus pattern (9 bp):
AAAAGAAGA
Found at i:57367670 original size:12 final size:13
Alignment explanation
Indices: 57367653--57367687 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
57367643 CATAAATCAC
57367653 TTTTTTTTTCG-A
1 TTTTTTTTTCGAA
*
57367665 TTTTTTTTTAGAA
1 TTTTTTTTTCGAA
57367678 TTTTTTTTTC
1 TTTTTTTTTC
57367688 AAACTTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:57370105 original size:41 final size:41
Alignment explanation
Indices: 57370043--57370128 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
57370033 ACCTGACATG
* * *
57370043 AGCTGGTGTAGAGTACTCTGAGCTATCTTGAGTTGAAGATA
1 AGCTAGTGTAGAGTACTCTGAGCTAACTTGAGCTGAAGATA
*
57370084 AGCTAGTGTAGAGTACTCTGAGCTAACTTGAGCTGAAGATG
1 AGCTAGTGTAGAGTACTCTGAGCTAACTTGAGCTGAAGATA
57370125 AGCT
1 AGCT
57370129 GCATATACAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (41 bp):
AGCTAGTGTAGAGTACTCTGAGCTAACTTGAGCTGAAGATA
Found at i:57373686 original size:30 final size:30
Alignment explanation
Indices: 57373591--57373687 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
57373581 AGCTCACTCC
* *
57373591 TAGCTC-ACTTTCAACTCACGAGCTAAAACT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
57373621 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
57373651 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
57373681 TAGCTCA
1 TAGCTCA
57373688 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.82
31 7 0.14
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:57374561 original size:22 final size:20
Alignment explanation
Indices: 57374529--57374577 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
57374519 GCCGAATTTA
57374529 TGAACTATTTTAATACATTAGTG
1 TGAAC-ATTTTAAT-CATT-GTG
* *
57374552 TGAACATTTTTATTATTGTG
1 TGAACATTTTAATCATTGTG
57374572 TGAACA
1 TGAACA
57374578 CCTAGATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 3 0.12
22 7 0.29
23 5 0.21
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (20 bp):
TGAACATTTTAATCATTGTG
Found at i:57375914 original size:15 final size:15
Alignment explanation
Indices: 57375894--57375976 Score: 71
Period size: 15 Copynumber: 5.5 Consensus size: 15
57375884 GATAATCAAA
*
57375894 AAATCCAAGATAGAG
1 AAATCCAAGATAAAG
***
57375909 AAATCCAAGACGGAG
1 AAATCCAAGATAAAG
*
57375924 -AAGCTC-AGAATAAAG
1 AAATC-CAAG-ATAAAG
57375939 AAATCCAAGATAAAG
1 AAATCCAAGATAAAG
* *
57375954 AAATCCATGATAAGG
1 AAATCCAAGATAAAG
57375969 AAATCCAA
1 AAATCCAA
57375977 ATTACAATAC
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
14 5 0.09
15 44 0.81
16 5 0.09
ACGTcount: A:0.53, C:0.16, G:0.18, T:0.13
Consensus pattern (15 bp):
AAATCCAAGATAAAG
Found at i:57378761 original size:19 final size:19
Alignment explanation
Indices: 57378737--57378776 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
57378727 AGCTCCCATG
57378737 TAGCTC-CACACCAGCTCAT
1 TAGCTCGCA-ACCAGCTCAT
*
57378756 TAGCTCGGAACCAGCTCAT
1 TAGCTCGCAACCAGCTCAT
57378775 TA
1 TA
57378777 TCAGCTCACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGCTCGCAACCAGCTCAT
Found at i:57380040 original size:14 final size:14
Alignment explanation
Indices: 57380018--57380065 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
57380008 ACCTAAACCG
* *
57380018 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
57380032 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
57380046 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
57380060 ACCATT
1 ACCATT
57380066 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:57381800 original size:15 final size:15
Alignment explanation
Indices: 57381780--57381827 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
57381770 TCAAAGATAG
57381780 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
57381795 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
57381810 -TTTATGGATATAAA
1 GTTTATGGATATGAA
57381824 GTTT
1 GTTT
57381828 TTGTAGATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:57383777 original size:90 final size:90
Alignment explanation
Indices: 57383661--57383921 Score: 254
Period size: 92 Copynumber: 2.8 Consensus size: 90
57383651 ATGTAACCGT
** * * **
57383661 GCCGATGCATGTCCCAGACACATCTTACACTAGCACATCTTGTAGCCGACGTATGTCCCTGACAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATATTGTAGCCGACGCATGTCCCAAACAT
* * *
57383726 GT-TTGACACTGGCTAACATCTCGAG
66 GTCTT-ACACTAGCCAACATCTCAAG
* * * *
57383751 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGTAGCTGATGCATGTCCCAAAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG--CACATATTGTAGCCGACGCATGTCCCAAAC
** * *
57383816 ATGTCTTACACTAGCCCTCGTCTCAAT
64 ATGTCTTACACTAGCCAACATCTCAAG
* * * * *
57383843 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATGTGGCCGATGCATGTCCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CATATTGTAGCCGACGCATGTCCCAA
57383908 ACATGTCTTACACT
62 ACATGTCTTACACT
57383922 GGCACACAAA
Statistics
Matches: 140, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
90 30 0.21
92 48 0.34
93 16 0.11
94 46 0.33
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATATTGTAGCCGACGCATGTCCCAAACAT
GTCTTACACTAGCCAACATCTCAAG
Found at i:57383804 original size:46 final size:46
Alignment explanation
Indices: 57383661--57383921 Score: 226
Period size: 46 Copynumber: 5.7 Consensus size: 46
57383651 ATGTAACCGT
** * *
57383661 GCCGATGCATGTCCCAGACACATCTTACACTAG--CACATCTTGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGTA
* * * * ** * *
57383705 GCCGACGTATGTCCCTGACATGT-TTGACACTGGCTAACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTT-ACACTAGCTCTCATATTGTA
*
57383750 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGTA
* * * * * **
57383797 GCTGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGT-CTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGTA
* * *
57383842 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATGTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATTGTA
*
57383891 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
57383922 GGCACACAAA
Statistics
Matches: 174, Mismatches: 33, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.01
44 24 0.14
45 3 0.02
46 92 0.53
47 29 0.17
48 23 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGTA
Found at i:57383903 original size:94 final size:92
Alignment explanation
Indices: 57383660--57383921 Score: 278
Period size: 94 Copynumber: 2.8 Consensus size: 92
57383650 CATGTAACCG
** ** * * **
57383660 TGCCGATGCATGTCCCAGACACATCTTACACTAGC-A-CATCTTGTAGCCGACGTATGTCCCTGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTAGCCGATGCATGTCCCAAA
* *** * *
57383723 CATGT-TTGACACTGGCTAACATCTCGA
66 CATGTCTT-ACACTAGCCCTCGTCTCAA
* * * * *
57383750 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGTAGCTGATGCATGTCCCAAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTAGCCGATGCATGTCCCAAA
57383815 CATGTCTTACACTAGCCCTCGTCTCAA
66 CATGTCTTACACTAGCCCTCGTCTCAA
* *
57383842 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATGTGGCCGATGCATGTCCTA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATAATGTAGCCGATGCATGTCCCA
*
57383907 GACATGTCTTACACT
64 AACATGTCTTACACT
57383922 GGCACACAAA
Statistics
Matches: 142, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
90 31 0.22
92 46 0.32
93 16 0.11
94 49 0.35
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTAGCCGATGCATGTCCCAAA
CATGTCTTACACTAGCCCTCGTCTCAA
Found at i:57385573 original size:50 final size:49
Alignment explanation
Indices: 57385406--57385636 Score: 200
Period size: 50 Copynumber: 4.6 Consensus size: 49
57385396 TGTAGTACTT
* * * * *
57385406 TACTAAGTGCAGGCTACTACGTGTAGCATACT-ATTAAGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTATCAGATTGA-T-CGTCACATGTGTAG
* * *
57385456 TACTAAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGATCACGTGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTA-TCAGATTGA--TCG-TCACATGTGTAG
* *
57385507 TACTAAATGCAAGCTACTACGTGTATCAGATGGTGAT-GTCACATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTATCAGAT--TGATCGTCACATGTGTAG
* * * * * *
57385557 TACTAAGTGCAGGCTACTACATGTACCGGATTGTTGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTATCAGATTGATCGTCACATGTGTAG
* *
57385606 TACTAAGTGCAGACTACTATGTGTATCAGAT
1 TACTAAGTGCAGGCTACTACGTGTATCAGAT
57385637 AGCTTCGACT
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
48 3 0.02
49 39 0.26
50 66 0.44
51 37 0.25
52 1 0.01
54 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TACTAAGTGCAGGCTACTACGTGTATCAGATTGATCGTCACATGTGTAG
Found at i:57385753 original size:27 final size:26
Alignment explanation
Indices: 57385723--57385774 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
57385713 GGGAAAATCG
57385723 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
57385750 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
57385775 GTTTATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:57393189 original size:27 final size:26
Alignment explanation
Indices: 57393159--57393210 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
57393149 GGGAAAATCG
57393159 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
57393186 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
57393211 GTTTATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:57400157 original size:46 final size:44
Alignment explanation
Indices: 57400086--57400385 Score: 205
Period size: 46 Copynumber: 6.6 Consensus size: 44
57400076 AATGTAGTGC
*
57400086 CCCAGACAGGTCTTACACT-GACACATGTAATCGT-GCCGATGCATGT
1 CCCAGACATGTCTTACACTAG-CACA--TAAT-GTGGCCGATGCATGT
* * * **
57400132 CCCAGACATGTCTTACACTAGCACATCATGTAGCAGACACATGT
1 CCCAGACATGTCTTACACTAGCACATAATGTGGCCGATGCATGT
* * * * *
57400176 CCCTGACATGTCTGACACTAGCTAACAT-CTCGAGGCTGATGCATGT
1 CCCAGACATGTCTTACACTAGC--ACATAAT-GTGGCCGATGCATGT
* * * *
57400222 CCCAGACATGTCTTACACTGGCTCTTATACTGTGGCTGATGCATGT
1 CCCAGACATGTCTTACACTAGCAC--ATAATGTGGCCGATGCATGT
* ** * * *
57400268 CCCAGACATGTCTTACACTAGC-CCTCGTCTCAATGCCAATGCCATGT
1 CCCAGACATGTCTTACACTAGCACATAATGT---GGCCGATG-CATGT
57400315 CCCAGACATGGTCTT-CACTAGCTATCATAATGTGGCCGATGCATGT
1 CCCAGACAT-GTCTTACACTAGC-A-CATAATGTGGCCGATGCATGT
* * *
57400361 CCCAAACATATCTTACACTGGCACA
1 CCCAGACATGTCTTACACTAGCACA
57400386 CAAATCTCAT
Statistics
Matches: 202, Mismatches: 35, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
43 5 0.02
44 35 0.17
45 7 0.03
46 116 0.57
47 30 0.15
48 5 0.02
50 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
CCCAGACATGTCTTACACTAGCACATAATGTGGCCGATGCATGT
Found at i:57400356 original size:93 final size:92
Alignment explanation
Indices: 57400119--57400379 Score: 285
Period size: 93 Copynumber: 2.8 Consensus size: 92
57400109 CATGTAATCG
* * ** *
57400119 TGCCGATGCATGTCCCAGACATGTCTTACACTAGC-A-CATCATGTAGCAGACACATGTCCCTGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTGGCAGATGCATGTCCCAGA
* * *
57400182 CATGTCTGACACTAGCTAACATCTCGA
66 CATGTCTTACACTAGCCAACATCTCAA
* * * * * * *
57400209 GGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTTATACTGTGGCTGATGCATGTCCCAGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTGGCAGATGCATGTCCCAGA
** *
57400274 CATGTCTTACACTAGCCCTCGTCTCAA
66 CATGTCTTACACTAGCCAACATCTCAA
* *
57400301 TGCCAATGCCATGTCCCAGACATGGTCTT-CACTAGCTATCATAATGTGGCCGATGCATGTCCCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATAATGTGGCAGATGCATGTCCCA
* *
57400365 AACATATCTTACACT
64 GACATGTCTTACACT
57400380 GGCACACAAA
Statistics
Matches: 139, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
90 32 0.23
92 45 0.32
93 57 0.41
94 5 0.04
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATAATGTGGCAGATGCATGTCCCAGA
CATGTCTTACACTAGCCAACATCTCAA
Found at i:57401605 original size:42 final size:42
Alignment explanation
Indices: 57401542--57401717 Score: 178
Period size: 42 Copynumber: 4.0 Consensus size: 42
57401532 CTTCGTTTTC
** * *
57401542 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
57401585 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
57401626 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
* *
57401675 TCGATGTCATAGTCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
57401716 TC
1 TC
57401718 TCACTGATGC
Statistics
Matches: 116, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
41 10 0.09
42 63 0.54
43 2 0.02
45 2 0.02
47 1 0.01
48 2 0.02
49 36 0.31
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:57401686 original size:49 final size:48
Alignment explanation
Indices: 57401612--57401717 Score: 176
Period size: 49 Copynumber: 2.2 Consensus size: 48
57401602 TATGGTCTTA
57401612 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCATATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* *
57401662 CACATATCATATATCGATGTCATAGTCCAGCTATGGTCTTACACGAAT
1 CACATATCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
57401710 CACATATC
1 CACATATC
57401718 TCACTGATGC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
48 11 0.20
49 37 0.69
50 6 0.11
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (48 bp):
CACATATCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:57401852 original size:31 final size:31
Alignment explanation
Indices: 57401817--57401903 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
57401807 CTTGTCACTT
* * *
57401817 GTAGCTGAAGCTACCACTATTCACTGATTAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
* *
57401848 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
57401879 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
57401904 TGTCATTTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:57401983 original size:50 final size:51
Alignment explanation
Indices: 57401879--57402007 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
57401869 CACTGATCAG
* * *
57401879 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAAT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAAT
* *
57401930 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAAT
57401980 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
57402008 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 48 0.67
51 24 0.33
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAAT
Found at i:57413201 original size:13 final size:13
Alignment explanation
Indices: 57413175--57413209 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
57413165 CCAAAACAAC
*
57413175 TTAATAAGCTTAA
1 TTAATAAACTTAA
*
57413188 TTATTAAACTTAA
1 TTAATAAACTTAA
57413201 TTAATAAAC
1 TTAATAAAC
57413210 ACACTTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (13 bp):
TTAATAAACTTAA
Found at i:57413544 original size:39 final size:39
Alignment explanation
Indices: 57413485--57413561 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
57413475 ATATAGAACA
57413485 CATATTAATGATGTGAAAACTATGACATAATTAAAGACT
1 CATATTAATGATGTGAAAACTATGACATAATTAAAGACT
* **
57413524 CATATTAGTGATGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGATGTGAAAACTATGACATAATTAAAGAC
57413562 ACAAACTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (39 bp):
CATATTAATGATGTGAAAACTATGACATAATTAAAGACT
Found at i:57420492 original size:64 final size:64
Alignment explanation
Indices: 57420412--57420583 Score: 179
Period size: 67 Copynumber: 2.7 Consensus size: 64
57420402 AGACATTATG
* *
57420412 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACTG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC-GAGATAA
* * * * * *
57420476 ATGTAGTTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57420541 AA
63 AA
* * *
57420543 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
57420584 GTATAAGAGA
Statistics
Matches: 86, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
63 9 0.10
64 24 0.28
66 21 0.24
67 30 0.35
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57423551 original size:46 final size:46
Alignment explanation
Indices: 57423501--57423673 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
57423491 TGGTTGAGCA
57423501 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
57423547 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
57423592 CATCTGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57423640 CCCGAGCTCGTAGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57423674 GGGGGGGTTA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57423657 original size:93 final size:93
Alignment explanation
Indices: 57423498--57423668 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57423488 GGATGGTTGA
* *** *
57423498 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTAGAGT
57423563 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
57423591 GCATCTGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTAGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTAGAGT
57423656 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57423669 ACTTAGGGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTAGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:57428497 original size:30 final size:30
Alignment explanation
Indices: 57428461--57428557 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
57428451 AGCTCACTCC
57428461 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
57428491 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
57428521 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
57428551 TAGCTCA
1 TAGCTCA
57428558 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:57432724 original size:46 final size:45
Alignment explanation
Indices: 57432674--57432844 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
57432664 TGGTTGAGCA
57432674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
* * * *
57432720 TCCGAACTCGTTGAGTTGAGTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAA-T--G
*
57432764 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
* * *
57432812 CCCGAGCTCATTGAGTTGAGTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTA
57432845 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 19 0.18
46 60 0.58
47 7 0.07
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
Found at i:57432828 original size:92 final size:92
Alignment explanation
Indices: 57432671--57432839 Score: 302
Period size: 92 Copynumber: 1.8 Consensus size: 92
57432661 GGATGGTTGA
* * *
57432671 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
57432736 TGAGTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCGAGTTCGTGAAATGTAACTAG
*
57432763 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
57432828 TGAGTCGAGTTC
66 TGAGTCGAGTTC
57432840 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCGAGTTCGTGAAATGTAACTAG
Found at i:57437386 original size:46 final size:46
Alignment explanation
Indices: 57437336--57437511 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57437326 TGGTTGAGCA
57437336 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57437382 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57437427 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57437475 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57437512 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57437492 original size:93 final size:93
Alignment explanation
Indices: 57437333--57437504 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57437323 GGATGGTTGA
* *
57437333 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57437398 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57437426 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57437491 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57437505 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57444868 original size:46 final size:46
Alignment explanation
Indices: 57444818--57444993 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57444808 TGGTTGAGCA
57444818 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57444864 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57444909 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57444957 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57444994 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57444974 original size:93 final size:93
Alignment explanation
Indices: 57444815--57444986 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57444805 GGATGGTTGA
* *
57444815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57444880 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57444908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57444973 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57444987 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57446558 original size:27 final size:27
Alignment explanation
Indices: 57446492--57446577 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
57446482 GTAAAAAGGT
*
57446492 AAAGAAAA-AAAATGAGAGAAAGAAAG
1 AAAGAAAAGAAAAAGAGAGAAAGAAAG
*
57446518 AAA-AAATAGCAAAAGAGAGAAAGAAA-
1 AAAGAAA-AGAAAAAGAGAGAAAGAAAG
57446544 AAGAGAAAAGAAAAAGATGA-AAA-AAAG
1 AA-AGAAAAGAAAAAGA-GAGAAAGAAAG
57446571 -AAGAAAA
1 AAAGAAAA
57446578 ATGAGAAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
25 9 0.18
26 10 0.20
27 27 0.53
28 5 0.10
ACGTcount: A:0.74, C:0.01, G:0.21, T:0.03
Consensus pattern (27 bp):
AAAGAAAAGAAAAAGAGAGAAAGAAAG
Found at i:57446565 original size:14 final size:13
Alignment explanation
Indices: 57446494--57446578 Score: 63
Period size: 14 Copynumber: 6.5 Consensus size: 13
57446484 AAAAAGGTAA
*
57446494 AGAAAA-AAAATG
1 AGAAAAGAAAAAG
57446506 AGAGAAAGAAAGAA-
1 AGA-AAAGAAA-AAG
*
57446520 A-AAATAGCAAAAG
1 AGAAA-AGAAAAAG
57446533 AGAGAAAGAAAAAG
1 AGA-AAAGAAAAAG
57446547 AGAAAAGAAAAAG
1 AGAAAAGAAAAAG
57446560 ATGAAAA-AAAGAAG
1 A-GAAAAGAAA-AAG
57446574 A-AAAA
1 AGAAAA
57446579 TGAGAAAATG
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
12 11 0.18
13 23 0.38
14 24 0.39
15 3 0.05
ACGTcount: A:0.74, C:0.01, G:0.21, T:0.04
Consensus pattern (13 bp):
AGAAAAGAAAAAG
Found at i:57448162 original size:80 final size:80
Alignment explanation
Indices: 57448078--57448226 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57448068 TATGGTAACC
* * * *
57448078 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57448142 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57448158 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57448223 CCGG
66 CCGG
57448227 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57448168 original size:40 final size:38
Alignment explanation
Indices: 57448119--57448226 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57448109 ATCACGATTT
*
57448119 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57448159 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57448199 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57448227 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57451615 original size:43 final size:43
Alignment explanation
Indices: 57451567--57451699 Score: 164
Period size: 43 Copynumber: 3.1 Consensus size: 43
57451557 ACTTCCGAGG
*
57451567 TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGATA
1 TGTGATTTTGTGTAAGACCATGTCTGGGACATAGGCATCGATA
** *
57451610 TGTGATTAAGTGTAAAACCATG-CTTGGGACATAGGCATCG-TA
1 TGTGATTTTGTGTAAGACCATGTC-TGGGACATAGGCATCGATA
* * * *
57451652 TATGA-TTTGTCTAAGACCCTGTCTGGGACAGAGGCATCGATA
1 TGTGATTTTGTGTAAGACCATGTCTGGGACATAGGCATCGATA
57451694 TGTGAT
1 TGTGAT
57451700 AGCATGTAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
41 26 0.35
42 14 0.19
43 34 0.46
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTGATTTTGTGTAAGACCATGTCTGGGACATAGGCATCGATA
Found at i:57453913 original size:29 final size:29
Alignment explanation
Indices: 57453871--57453995 Score: 173
Period size: 29 Copynumber: 4.3 Consensus size: 29
57453861 GAAAGCATGT
57453871 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
57453900 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
57453929 ATACT-AATATGATTTGAGCCTAATGGGAC
1 ATA-TGAATGTGATTTGGGCCTAATGGGCC
* *
57453958 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
57453986 ATATGCATGT
1 ATATGAATGT
57453996 ATGTAGACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
28 22 0.26
29 61 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:57457148 original size:42 final size:42
Alignment explanation
Indices: 57457096--57457191 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
57457086 CGGCCTAGAG
* *
57457096 ACACGGGCGTGTCTATTGGTCATGTGTGTGACATGGGCTAGC
1 ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
* *
57457138 ACACAGGCGTGTCTATTGGTCGTGTGTGTCACACGGGCTAGC
1 ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
57457180 ACACGGGCGTGT
1 ACACGGGCGTGT
57457192 GGTCAGCCGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.17, C:0.22, G:0.35, T:0.26
Consensus pattern (42 bp):
ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
Found at i:57459853 original size:28 final size:28
Alignment explanation
Indices: 57459785--57459891 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 28
57459775 AGCATAACTG
* *
57459785 TAAATGTGATTGGGCCTAAT-GGTCGTA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* * *
57459812 TGAATGTGATTTGGGCATAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCATA
*
57459841 TAAATGTGATTGGGCCTAATAGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
*
57459869 TGAAA-GAGATTGGGCCTAATGGG
1 T-AAATGTGATTGGGCCTAATGGG
57459892 ATATATACAG
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
27 8 0.12
28 43 0.65
29 15 0.23
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCATA
Found at i:57459882 original size:56 final size:56
Alignment explanation
Indices: 57459785--57459891 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
57459775 AGCATAACTG
* * * *
57459785 TAAATGTGATTGGGCCTAATGGTCGTATGAATGTGATTTGGGCATAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCATAATGGGCCACA
*
57459841 TAAATGTGATTGGGCCTAATAGGCCATATGAAAGAGA-TTGGGCCTAATGGG
1 TAAATGTGATTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCATAATGGG
57459892 ATATATACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
56 33 0.73
57 12 0.27
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCATAATGGGCCACA
Found at i:57461162 original size:2 final size:2
Alignment explanation
Indices: 57461155--57461187 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
57461145 TTGTGTTTTA
*
57461155 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57461188 AATTTTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57467481 original size:9 final size:9
Alignment explanation
Indices: 57467467--57467497 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
57467457 GTTGTGAATT
57467467 GGCCAAATG
1 GGCCAAATG
57467476 GGCCAAATG
1 GGCCAAATG
*
57467485 GGCTAAATG
1 GGCCAAATG
57467494 GGCC
1 GGCC
57467498 CGATGGGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.29, C:0.23, G:0.35, T:0.13
Consensus pattern (9 bp):
GGCCAAATG
Found at i:57467645 original size:28 final size:28
Alignment explanation
Indices: 57467577--57467690 Score: 115
Period size: 28 Copynumber: 4.1 Consensus size: 28
57467567 AGCATAACTG
* * *
57467577 TAAATGTGATTGGGCCTAAT-GACCGTA
1 TAAATATGATTGGGCCTAATGGGCCATA
* * *
57467604 TGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATATGA-TTGGGCCTAATGGGCCATA
*
57467633 TAAATATGATTGGGCTTAATGGGCCATA
1 TAAATATGATTGGGCCTAATGGGCCATA
* *
57467661 TGAAAGA-GATTGGGCCTAATGGGCTATA
1 T-AAATATGATTGGGCCTAATGGGCCATA
57467689 TA
1 TA
57467691 CAGGCATGTG
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 9 0.12
28 49 0.67
29 15 0.21
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (28 bp):
TAAATATGATTGGGCCTAATGGGCCATA
Found at i:57467674 original size:56 final size:56
Alignment explanation
Indices: 57467577--57467684 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
57467567 AGCATAACTG
* * * *
57467577 TAAATGTGATTGGGCCTAATGACCGTATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATATGATTGGGCCTAATGACCATATGAAAGAGATTTGGGCCTAATGGGCCACA
* *
57467633 TAAATATGATTGGGCTTAATGGGCCATATGAAAGAGA-TTGGGCCTAATGGGC
1 TAAATATGATTGGGCCTAAT-GACCATATGAAAGAGATTTGGGCCTAATGGGC
57467685 TATATACAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 33 0.73
57 12 0.27
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (56 bp):
TAAATATGATTGGGCCTAATGACCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:57469863 original size:46 final size:46
Alignment explanation
Indices: 57469794--57469929 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
57469784 TATATATACA
* * * *
57469794 CATCTCA-ACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
57469839 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTCCCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
57469885 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
57469930 ATACATGTTC
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 7 0.09
46 71 0.91
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:57469963 original size:47 final size:47
Alignment explanation
Indices: 57469903--57470144 Score: 340
Period size: 47 Copynumber: 5.1 Consensus size: 47
57469893 ACACATTTCG
* *
57469903 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
57469950 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
57469997 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
57470044 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
57470095 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
57470142 CAT
1 CAT
57470145 AAAATCCTAA
Statistics
Matches: 176, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 134 0.76
49 2 0.01
51 40 0.23
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:57470031 original size:94 final size:96
Alignment explanation
Indices: 57469903--57470144 Score: 344
Period size: 98 Copynumber: 2.5 Consensus size: 96
57469893 ACACATTTCG
*
57469903 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
57469968 AT-CTC-ATATATGCATGTTCACATTCATCA
66 ATACGCAATATATACAGGTTCACATTCATCA
* * **
57469997 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
57470062 ATCACGCATATATATACAGGTTCACATTCATCA
66 AT-ACGCA-ATATATACAGGTTCACATTCATCA
* * **
57470095 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
57470145 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
94 62 0.48
96 2 0.02
98 65 0.50
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (96 bp):
CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATACGCAATATATACAGGTTCACATTCATCA
Found at i:57474428 original size:64 final size:64
Alignment explanation
Indices: 57474349--57474531 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
57474339 AGACATTATG
* *
57474349 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
57474413 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGAACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57474478 AA
63 AA
* * * *
57474480 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
57474532 TCGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57475623 original size:2 final size:2
Alignment explanation
Indices: 57475616--57475640 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57475606 TCATGACATG
57475616 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
57475641 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57485581 original size:2 final size:2
Alignment explanation
Indices: 57485574--57485603 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
57485564 TTGTTTGATG
57485574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57485604 GTATTCGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57487128 original size:47 final size:47
Alignment explanation
Indices: 57487074--57487360 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
57487064 TTAGGATTTT
** * * *
57487074 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57487121 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
57487168 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57487215 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57487262 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
57487309 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAAT-GTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57487355 ATGTGA
1 ATGTGA
57487361 AATATATATA
Statistics
Matches: 215, Mismatches: 25, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
46 8 0.04
47 207 0.96
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57487226 original size:141 final size:141
Alignment explanation
Indices: 57487073--57487351 Score: 495
Period size: 141 Copynumber: 2.0 Consensus size: 141
57487063 TTTAGGATTT
** *
57487073 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGACCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGACCAATGTGATGAATGTGAGC
*
57487138 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
57487203 GCCGAATGGCC
131 GCCGAATGGCC
* *
57487214 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGACCAATGTGATGAATGTGAGC
*
57487279 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
57487344 GCCGAATG
131 GCCGAATG
57487352 TCAATGTGAA
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 131 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGACCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:57487317 original size:25 final size:25
Alignment explanation
Indices: 57487242--57487317 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
57487232 ATGCATATAT
57487242 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
57487267 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
57487289 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
57487314 GTGA
1 GTGA
57487318 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:57487415 original size:94 final size:91
Alignment explanation
Indices: 57487096--57487416 Score: 283
Period size: 94 Copynumber: 3.4 Consensus size: 91
57487086 TGAATGTGTA
* * * * * * * *
57487096 TATATGTGATAAGGCCAAATGACC-AATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 TATATGTGGTAAGGCCGAATGGCCTAGTGTGA--AATATGAACATGCATATATGTGATAAAGCCG
* *
57487160 AATGGCCAATGTGGTGAATATGAACATG
64 AATGGCCAATGTGATGAATATGAGCATG
* * *
57487188 CATATATGTGATAAGGCCGAATGGCCTA-TGTGATGAATGTGAACATGCATATATGTGATAAGGC
1 --TATATGTGGTAAGGCCGAATGGCCTAGTGTGA--AATATGAACATGCATATATGTGATAAAGC
*
57487252 CGAATGGCCAATGTGATGAATGTGAGCATG
62 CGAATGGCCAATGTGATGAATATGAGCATG
* * *
57487282 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTG-AATATGAACATGCATATATGTGGTAAAGC
1 TATATGTG-G-TAAGGCCGAATGGCCTA-GT-GTGAAATATGAACATGCATATATGTGATAAAGC
* * *
57487346 CGAAT-GTCAATGTGAAATATATATATGAGATATG
62 CGAATGGCCAATGTG--AT-GA-ATATGAG-CATG
*
57487380 TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATG
1 TATATGTGGTAAGGCCGAATGGCCTAGTGTGAAATATG
57487417 TAGGCGATGT
Statistics
Matches: 195, Mismatches: 20, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
92 7 0.04
93 11 0.06
94 138 0.71
95 5 0.03
96 14 0.07
97 10 0.05
98 10 0.05
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (91 bp):
TATATGTGGTAAGGCCGAATGGCCTAGTGTGAAATATGAACATGCATATATGTGATAAAGCCGAA
TGGCCAATGTGATGAATATGAGCATG
Found at i:57487710 original size:37 final size:37
Alignment explanation
Indices: 57487565--57487709 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
57487555 GGAAATATAT
*
57487565 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
57487602 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57487639 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57487676 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
57487710 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57489044 original size:40 final size:40
Alignment explanation
Indices: 57488976--57489407 Score: 648
Period size: 40 Copynumber: 10.8 Consensus size: 40
57488966 GAGAATTGAG
*
57488976 AGTGATATATCCGGGCTAAATCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57489016 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57489056 AGTGATATAGCCGGGCTAAATCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57489096 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
57489136 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
57489176 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57489216 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57489256 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
57489296 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
57489336 AGTGATATATTCGCTCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
57489376 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
57489408 ATCATGCTGG
Statistics
Matches: 351, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 351 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:57493454 original size:47 final size:47
Alignment explanation
Indices: 57493400--57493688 Score: 434
Period size: 47 Copynumber: 6.1 Consensus size: 47
57493390 TTAGGATTTT
** * *
57493400 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57493447 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
57493494 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57493541 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57493588 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
57493635 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57493682 ATGTGAT
1 ATGTGAT
57493689 ATATATATAT
Statistics
Matches: 218, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57493552 original size:141 final size:141
Alignment explanation
Indices: 57493399--57493688 Score: 508
Period size: 141 Copynumber: 2.1 Consensus size: 141
57493389 TTTAGGATTT
** *
57493399 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
*
57493464 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
57493529 GCCGAATGGCC
131 GCCGAATGGCC
*
57493540 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
*
57493605 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
57493670 GCCGAATGGTC
131 GCCGAATGGCC
*
57493681 AATGTGAT
1 TATGTGAT
57493689 ATATATATAT
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:57493643 original size:25 final size:25
Alignment explanation
Indices: 57493568--57493643 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
57493558 ATGCATATAT
57493568 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
57493593 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
57493615 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
57493640 GTGA
1 GTGA
57493644 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:57493738 original size:94 final size:91
Alignment explanation
Indices: 57493422--57493743 Score: 333
Period size: 94 Copynumber: 3.4 Consensus size: 91
57493412 TGAATGTGTA
* * * * * * *
57493422 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCCGA
* *
57493487 ATGGCCAATGTGGTGAATATGAACATG
65 ATGGCCAATGTGATGAATATGAGCATG
* * *
57493514 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCC
*
57493579 GAATGGCCAATGTGATGAATGTGAGCATG
63 GAATGGCCAATGTGATGAATATGAGCATG
* * *
57493608 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 TATATGTG-G-TAAGGCCGAATGGCCTATGT-GTGAATATGAACATGCATATATGTGATAAAGCC
* * *
57493673 GAATGGTCAATGTGATATATATATATGAGATATG
63 GAATGGCCAATGTG--AT-GA-ATATGAG-CATG
*
57493707 TATATGTGGTAAAGCCGAATGG-CTA-GTGTGAAATATG
1 TATATGTGGTAAGGCCGAATGGCCTATGTGTG-AATATG
57493744 TAGGCGATGT
Statistics
Matches: 199, Mismatches: 20, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
92 7 0.04
94 149 0.75
95 9 0.05
96 4 0.02
97 13 0.07
98 7 0.04
99 10 0.05
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (91 bp):
TATATGTGGTAAGGCCGAATGGCCTATGTGTGAATATGAACATGCATATATGTGATAAAGCCGAA
TGGCCAATGTGATGAATATGAGCATG
Found at i:57494037 original size:37 final size:37
Alignment explanation
Indices: 57493892--57494036 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
57493882 GGAAATATAT
*
57493892 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
57493929 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57493966 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57494003 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
57494037 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57500687 original size:17 final size:18
Alignment explanation
Indices: 57500665--57500700 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
57500655 GTGCATTGTA
57500665 TAAG-TTTAAAAAAATTT
1 TAAGTTTTAAAAAAATTT
*
57500682 TAAGTTTTAGAAAAATTT
1 TAAGTTTTAAAAAAATTT
57500700 T
1 T
57500701 GTATGTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44
Consensus pattern (18 bp):
TAAGTTTTAAAAAAATTT
Found at i:57502387 original size:96 final size:96
Alignment explanation
Indices: 57502237--57502424 Score: 313
Period size: 96 Copynumber: 2.0 Consensus size: 96
57502227 ACAGCTTTCA
* * * *
57502237 ATCGAGTATAAAAATGGCACCGTACGAAGATTTATACGGTCGCATATGCTGAACACCCTTTTACT
1 ATCGAGTATAAAAATGGCACCGTACGAAGATTTATACGATCGCAAATGCCGAACACCCTTGTACT
57502302 GGACAGAGCTTAGCGAGAATAAGATTCGTGG
66 GGACAGAGCTTAGCGAGAATAAGATTCGTGG
* * *
57502333 ATCGAGTATAAAAATGGCACTGTATGAAGCTTTATACGATCGCAAATGCCGAACACCCTTGTACT
1 ATCGAGTATAAAAATGGCACCGTACGAAGATTTATACGATCGCAAATGCCGAACACCCTTGTACT
57502398 GGACAGAGCTTAGCGAGAATAAGATTC
66 GGACAGAGCTTAGCGAGAATAAGATTC
57502425 ACAGGGTTAA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 85 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (96 bp):
ATCGAGTATAAAAATGGCACCGTACGAAGATTTATACGATCGCAAATGCCGAACACCCTTGTACT
GGACAGAGCTTAGCGAGAATAAGATTCGTGG
Found at i:57504237 original size:43 final size:42
Alignment explanation
Indices: 57504160--57504312 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
57504150 TGTGATTTCA
* *
57504160 TGTAAGACCATGTCTGGGACA-TGGGCATCGATATGTGATTACG
1 TGTAAGACCATGTCTAGGATAGT-GGCATCGATATGTGATTA-G
*
57504203 TGTAAGACCATGTCTAGGATAGTGG-ATCG-TATATGATT--
1 TGTAAGACCATGTCTAGGATAGTGGCATCGATATGTGATTAG
* *
57504241 TGTAAATGACCCTGTCTAGGATAGAGGCATCGATATGTGA-TAG
1 TGT-AA-GACCATGTCTAGGATAGTGGCATCGATATGTGATTAG
* *
57504284 TATGTAAGACCATATCCAGGATA-TGGCAT
1 --TGTAAGACCATGTCTAGGATAGTGGCAT
57504313 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
40 18 0.20
41 13 0.14
42 15 0.16
43 34 0.37
44 3 0.03
45 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGATAGTGGCATCGATATGTGATTAG
Found at i:57506940 original size:24 final size:24
Alignment explanation
Indices: 57506889--57507230 Score: 497
Period size: 24 Copynumber: 14.0 Consensus size: 24
57506879 GTTTTATCAT
*
57506889 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
57506914 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
57506938 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
57506962 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
57506986 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
57507011 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
* *
57507036 ATAATTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
57507061 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
57507086 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
57507110 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
57507134 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
57507158 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
57507182 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
57507207 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
57507231 CACTTCCTCC
Statistics
Matches: 296, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
24 169 0.57
25 127 0.43
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:57507307 original size:20 final size:20
Alignment explanation
Indices: 57507279--57507339 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
57507269 TTATGAATAC
57507279 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57507299 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57507319 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
57507339 A
1 A
57507340 CCGTGTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:57507424 original size:25 final size:25
Alignment explanation
Indices: 57507382--57507429 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57507372 ATATTTAAAC
* * *
57507382 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
57507407 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
57507430 CATTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:57508621 original size:27 final size:27
Alignment explanation
Indices: 57508591--57508655 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
57508581 GGGCGTATTC
*
57508591 GTCATTTTACCATACAAGGG-TATTATG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
57508618 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
57508645 GTCTTTTTACC
1 GTCATTTTACC
57508656 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:57508760 original size:28 final size:27
Alignment explanation
Indices: 57508709--57508794 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 27
57508699 CTAAATCTAC
57508709 AAACCAAGGGTTTTTCAGTAATTTTGT
1 AAACCAAGGGTTTTTCAGTAATTTTGT
*
57508736 AAACCAATGGTTTTTCTA-TAAATTTTAG-
1 AAACCAAGGGTTTTTC-AGT-AATTTT-GT
* *
57508764 AAAGTCAAGGGTATTT-ATGTAATTTTGT
1 AAA-CCAAGGGTTTTTCA-GTAATTTTGT
57508792 AAA
1 AAA
57508795 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
27 18 0.38
28 19 0.40
29 11 0.23
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTTTTTCAGTAATTTTGT
Found at i:57508804 original size:27 final size:26
Alignment explanation
Indices: 57508771--57508894 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 26
57508761 TAGAAAGTCA
**
57508771 AGGGTATTTATGTAATTTTGTAAATT-
1 AGGGTATTT-TGTAATTTTACAAATTG
57508797 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTT-GTAATTTTACAAATTG
* * ***
57508825 AGGGTATTTCGGTAATTTCACAAACCA
1 AGGGTATTT-TGTAATTTTACAAATTG
* * * *
57508852 ATGGTATTCTGGTAATTTTACAAACTA
1 AGGGTATT-TTGTAATTTTACAAATTG
*
57508879 AGGGTATTTTGGAATT
1 AGGGTATTTTGTAATT
57508895 CTACCCTACA
Statistics
Matches: 80, Mismatches: 13, Indels: 10
0.78 0.13 0.10
Matches are distributed among these distances:
26 8 0.10
27 70 0.88
28 2 0.03
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTACAAATTG
Found at i:57508956 original size:27 final size:27
Alignment explanation
Indices: 57508926--57509071 Score: 179
Period size: 27 Copynumber: 5.4 Consensus size: 27
57508916 GTAATTTCAC
57508926 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
57508953 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
57508980 AATC-AGGGGTAAAATGGTAATTCTGTA
1 AATCGA-GGGTAAAATGGTAATTCTATA
*
57509007 AATCG-GGGTTAAAATAGTAATTCTATA
1 AATCGAGGG-TAAAATGGTAATTCTATA
* * *
57509034 AATTGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
57509061 AATCAAGGGTA
1 AATCGAGGGTA
57509072 CTTTGGTAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
26 4 0.04
27 95 0.93
28 3 0.03
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:57512069 original size:24 final size:24
Alignment explanation
Indices: 57512018--57512310 Score: 390
Period size: 24 Copynumber: 12.0 Consensus size: 24
57512008 GTTTTATCAT
* *
57512018 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
57512043 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
57512067 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
57512091 ATAATTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
57512116 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
* *
57512141 ATAATTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
57512166 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
57512191 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
57512215 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
**
57512239 ATAACTAAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
57512263 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
57512287 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
57512311 CACTTCCTTC
Statistics
Matches: 245, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
24 140 0.57
25 105 0.43
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:57512384 original size:20 final size:20
Alignment explanation
Indices: 57512359--57512425 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
57512349 TTATGAATAC
57512359 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
57512379 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57512399 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57512419 ACCATGT
1 ATCATGT
57512426 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:57512390 original size:11 final size:11
Alignment explanation
Indices: 57512359--57512414 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
57512349 TTATGAATAC
57512359 ATCATGTGCAT
1 ATCATGTGCAT
*
57512370 ATCA--TACAT
1 ATCATGTGCAT
57512379 ATCATGTGCAT
1 ATCATGTGCAT
*
57512390 ATCA--TACAT
1 ATCATGTGCAT
*
57512399 GTCATGTGCAT
1 ATCATGTGCAT
57512410 ATCAT
1 ATCAT
57512415 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:57513733 original size:27 final size:27
Alignment explanation
Indices: 57513671--57513735 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
57513661 AGGCATATTC
57513671 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* * *
57513698 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
57513725 GTCTTTTTACC
1 GTCATTTTACC
57513736 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:57513819 original size:27 final size:27
Alignment explanation
Indices: 57513789--57513886 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
57513779 GTAAATCTAC
*
57513789 AAACCAAGGGTTTTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
57513816 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * * *
57513842 AGAAAGTCAAGCGTATTTATGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
57513872 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
57513887 TGGTAATTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
26 1 0.02
27 31 0.54
28 7 0.12
29 17 0.30
30 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:57513892 original size:27 final size:27
Alignment explanation
Indices: 57513854--57513975 Score: 106
Period size: 27 Copynumber: 4.5 Consensus size: 27
57513844 AAAGTCAAGC
**
57513854 GTATTTAT-GTAATTTTGTAAATCAGGG
1 GTATTT-TGGTAATTTTACAAATCAGGG
*
57513881 GTATTTTGGTAATTTTACAAAT-TGAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
* * * **
57513908 GTATTTCGGTAATTTCACAAACCAATG
1 GTATTTTGGTAATTTTACAAATCAGGG
* *
57513935 GTATTTTGGTAATTTTATAAA-CTAGGA
1 GTATTTTGGTAATTTTACAAATC-AGGG
57513962 GTATTTTGGTAATT
1 GTATTTTGGTAATT
57513976 CTACCCTACA
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.04
27 73 0.96
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCAGGG
Found at i:57514037 original size:27 final size:27
Alignment explanation
Indices: 57514007--57514171 Score: 181
Period size: 27 Copynumber: 6.1 Consensus size: 27
57513997 GTAATTTCAC
57514007 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
57514034 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
57514061 AATC-AGGGGTAAAATGGTAATTCTGTA
1 AATCGA-GGGTAAAATGGTAATTCTATA
* * * * *
57514088 AATCGAGGTTAAAATAGTAGTTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** * *
57514115 AATC-ACGGGTAAAACAGTAATTTTGTA
1 AATCGA-GGGTAAAATGGTAATTCTATA
* *
57514142 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
57514169 AAT
1 AAT
57514172 AAAGGGTATT
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.02
27 116 0.97
28 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:57514084 original size:54 final size:54
Alignment explanation
Indices: 57514013--57514171 Score: 212
Period size: 54 Copynumber: 2.9 Consensus size: 54
57514003 TCACAATCGA
* *
57514013 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCAC
* * * *
57514067 GGGTAAAATGGTAATTCTGTAAATCGAGGTTAAAAT-AGTAGTTTTGTAAATCAC
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGA-TAATTCTATAAATCAC
** * *
57514121 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAAT
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAAT
57514172 AAAGGGTATT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 87 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCAC
Found at i:57517226 original size:49 final size:48
Alignment explanation
Indices: 57517128--57517443 Score: 411
Period size: 49 Copynumber: 6.5 Consensus size: 48
57517118 CTTTCTCATT
* * *
57517128 TAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTTAA
1 TAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAA
57517177 TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTTAA
* *
57517226 TAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCGTAAGCCCTTTTTAC
1 TAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC-TTTTAA
* * * *
57517276 TAATTGGGGCGTAAGCCCTTTTTAATAACTGGGGCATAGGCCCTTTTGA
1 TAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTAA
*
57517325 TAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATAAGCCCTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAA
* * * *
57517372 TAACTGGGGCGTAAGCCCTTTTGATAATTGGGGCGTAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTTAA
* *
57517421 TAACTGGGGTATAAGCCATTTTA
1 TAACTGGGGCATAAGCCCTTTTA
57517444 CACTTCCTCC
Statistics
Matches: 239, Mismatches: 23, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
47 43 0.18
48 48 0.20
49 80 0.33
50 68 0.28
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (48 bp):
TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAA
Found at i:57517229 original size:25 final size:24
Alignment explanation
Indices: 57517128--57517443 Score: 411
Period size: 25 Copynumber: 13.0 Consensus size: 24
57517118 CTTTCTCATT
*
57517128 TAACTGGAGGCCT-AGCCTCTTTTAA
1 TAACTGG-GGCATAAGCC-CTTTTAA
* *
57517153 TAACTGGGGCAAAATCCCTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAA
57517177 TAACTGGGGCATAAGCCCTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAA
57517201 TAACTGGGGCATAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCC-TTTTAA
57517226 TAACTGGGGCATAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCC-TTTTAA
* *
57517251 TAACTGGGGCGTAAGCCCTTTTTAC
1 TAACTGGGGCATAAGCCC-TTTTAA
* *
57517276 TAATTGGGGCGTAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCC-TTTTAA
* *
57517301 TAACTGGGGCATAGGCCCTTTTGA
1 TAACTGGGGCATAAGCCCTTTTAA
*
57517325 TAACTGGGGCATAAGCCC-TTTGA
1 TAACTGGGGCATAAGCCCTTTTAA
57517348 TAACTGGGGCATAAGCCCTTTTAA
1 TAACTGGGGCATAAGCCCTTTTAA
* *
57517372 TAACTGGGGCGTAAGCCCTTTTGA
1 TAACTGGGGCATAAGCCCTTTTAA
* *
57517396 TAATTGGGGCGTAAGCCCTTTTTAA
1 TAACTGGGGCATAAGCCC-TTTTAA
* *
57517421 TAACTGGGGTATAAGCCATTTTA
1 TAACTGGGGCATAAGCCCTTTTA
57517444 CACTTCCTCC
Statistics
Matches: 264, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
23 23 0.09
24 120 0.45
25 121 0.46
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (24 bp):
TAACTGGGGCATAAGCCCTTTTAA
Found at i:57517517 original size:20 final size:20
Alignment explanation
Indices: 57517492--57517538 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
57517482 TTATGAATAC
57517492 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
57517512 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57517532 ACCATGT
1 ATCATGT
57517539 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:57517617 original size:25 final size:25
Alignment explanation
Indices: 57517575--57517622 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57517565 ATATTTAAAC
* * *
57517575 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
57517600 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
57517623 CATTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:57518814 original size:27 final size:27
Alignment explanation
Indices: 57518784--57518848 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
57518774 GGGCATATTC
*
57518784 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACA
* * *
57518811 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCATTTTACCATACAAGGGCTTTACA
*
57518838 GTCTTTTTACC
1 GTCATTTTACC
57518849 TATTAGGAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:57518932 original size:27 final size:27
Alignment explanation
Indices: 57518902--57518987 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
57518892 GTAAATCTAC
*
57518902 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAATGGTATTTCAGTAATTTTGT
57518929 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAATGGTATTTC-AGTAATTTTGT
*
57518955 AGAAAGTCAATGGTATTT-ATGTAATTTTGT
1 --AAA-CCAATGGTATTTCA-GTAATTTTGT
57518985 AAA
1 AAA
57518988 TTAGGGGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 7 0.14
29 18 0.36
30 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (27 bp):
AAACCAATGGTATTTCAGTAATTTTGT
Found at i:57519005 original size:27 final size:27
Alignment explanation
Indices: 57518966--57519088 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
57518956 GAAAGTCAAT
** *
57518966 GGTATTTAT-GTAATTTTGTAAATTAGG
1 GGTATTT-TGGTAATTTTACAAACTAGG
* *
57518993 GGTATTTTGGTAATTTTACAAA-TTGAT
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * * **
57519020 GGTGTTTCGGTAATTTCACAAACCAAT
1 GGTATTTTGGTAATTTTACAAACTAGG
57519047 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
57519074 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
57519089 CTACCCTATA
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.04
27 74 0.96
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:57519114 original size:81 final size:81
Alignment explanation
Indices: 57518962--57519121 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
57518952 TTTAGAAAGT
** * * * * *
57518962 CAATGGTATTTATGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGATGGTGTTT
1 CAATGGTATTTATGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTT
*
57519027 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
**
57519043 CAATGGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACCCTATAG-GGGTAT
1 CAATGGTATTTAT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAATAGAGGGTAT
57519106 TTCAGTAATTTCACAA
64 TTCAGTAATTTCACAA
57519122 TCGAGGGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 62 0.93
82 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (81 bp):
CAATGGTATTTATGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTT
CAGTAATTTCACAAAC
Found at i:57519150 original size:27 final size:27
Alignment explanation
Indices: 57519120--57519292 Score: 186
Period size: 27 Copynumber: 6.4 Consensus size: 27
57519110 GTAATTTCAC
*
57519120 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
57519147 AATCGAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
57519174 AAT-TAGGGGTAAAACAGTAATTCTGTA
1 AATCGA-GGGTAAAACGGTAATTCTATA
* * ** *
57519201 AATGGAGGTTAAAATAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
57519228 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
57519255 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
57519282 AATCAAGGGTA
1 AATCGAGGGTA
57519293 CTTTGGTAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 122 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:57519237 original size:81 final size:81
Alignment explanation
Indices: 57519124--57519284 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 81
57519114 TTTCACAATC
* *
57519124 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTGTAAATTAG-GGGTAAAA
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAA-TAGAGGGTAAAA
*
57519188 C-AGTAATTCTGTAAATG
65 CGA-TAATTCTATAAATG
* * * * *
57519205 GAGGTTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATAGAGGGTAAAAC
57519270 GATAATTCTATAAAT
66 GATAATTCTATAAAT
57519285 CAAGGGTACT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 67 0.96
82 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (81 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATAGAGGGTAAAAC
GATAATTCTATAAATG
Found at i:57524281 original size:40 final size:40
Alignment explanation
Indices: 57524236--57524402 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
57524226 CGGAATGTAA
*
57524236 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
57524276 CCGGATAGAGTAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57524316 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
57524356 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57524395 CCGGATAT
1 CCGGATAT
57524403 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57526376 original size:49 final size:49
Alignment explanation
Indices: 57526303--57526490 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
57526293 TAGCCAAAGC
*
57526303 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
57526352 AATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
57526403 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
57526452 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
57526491 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:57526425 original size:100 final size:100
Alignment explanation
Indices: 57526308--57526495 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
57526298 AAAGCTATCT
*
57526308 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAATAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAATAGCC
57526373 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
57526408 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAATAGCC
57526473 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
57526496 CCTCACAATA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAATAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:57530155 original size:19 final size:20
Alignment explanation
Indices: 57530128--57530165 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
57530118 AGTATTAAAG
*
57530128 CAAAATAAACATA-AATCCC
1 CAAAATAAAAATAGAATCCC
*
57530147 CAAATTAAAAATAGAATCC
1 CAAAATAAAAATAGAATCC
57530166 AAAGAGGCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.58, C:0.21, G:0.03, T:0.18
Consensus pattern (20 bp):
CAAAATAAAAATAGAATCCC
Found at i:57531067 original size:18 final size:18
Alignment explanation
Indices: 57531031--57531068 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
57531021 ATTGCGAGCT
*
57531031 CATGTGGGCCCACATGCC
1 CATGTGGGCCCACAAGCC
57531049 CATGT-GGCCCACAAAGCC
1 CATGTGGGCCCAC-AAGCC
57531067 CA
1 CA
57531069 GAAATGGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.24, C:0.39, G:0.24, T:0.13
Consensus pattern (18 bp):
CATGTGGGCCCACAAGCC
Found at i:57534637 original size:26 final size:27
Alignment explanation
Indices: 57534608--57534661 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
57534598 TAGTCTTCCC
57534608 ACCACA-AAGGGCAAAATAATCATTTT
1 ACCACATAAGGGCAAAATAATCATTTT
* *
57534634 ACCATATAAGGGTAAAATAATCATTTT
1 ACCACATAAGGGCAAAATAATCATTTT
57534661 A
1 A
57534662 TCAATTGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (27 bp):
ACCACATAAGGGCAAAATAATCATTTT
Found at i:57535738 original size:21 final size:21
Alignment explanation
Indices: 57535708--57535748 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
57535698 GATGGACTCC
57535708 AAAGAAAAG-AGAAAGAAGTAG
1 AAAGAAAAGAAG-AAGAAGTAG
*
57535729 AAAGAGAAGAAGAAGAAGTA
1 AAAGAAAAGAAGAAGAAGTA
57535749 ATGATCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (21 bp):
AAAGAAAAGAAGAAGAAGTAG
Found at i:57535740 original size:15 final size:16
Alignment explanation
Indices: 57535713--57535745 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
57535703 ACTCCAAAGA
*
57535713 AAAGAGAAAGAAGTAG
1 AAAGAGAAAGAAGAAG
57535729 AAAGAG-AAGAAGAAG
1 AAAGAGAAAGAAGAAG
57535744 AA
1 AA
57535746 GTAATGATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (16 bp):
AAAGAGAAAGAAGAAG
Found at i:57540227 original size:46 final size:46
Alignment explanation
Indices: 57540172--57540352 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
57540162 TAGGATGGTT
57540172 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
57540218 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
57540264 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
57540311 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57540353 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:57540333 original size:93 final size:93
Alignment explanation
Indices: 57540174--57540344 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57540164 GGATGGTTGA
* *
57540174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57540239 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57540267 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57540332 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57540345 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57543324 original size:15 final size:15
Alignment explanation
Indices: 57543304--57543372 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
57543294 GTATCTTGGG
57543304 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
57543319 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
57543334 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
57543349 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
57543364 TTTCTTTAT
1 TTTCTTTAT
57543373 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:57543373 original size:30 final size:30
Alignment explanation
Indices: 57543295--57543382 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
57543285 CATAGTATCG
* * * *
57543295 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
57543325 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
57543355 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
57543383 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:57545813 original size:46 final size:46
Alignment explanation
Indices: 57545758--57545938 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
57545748 TAGGATGGTT
57545758 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
57545804 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
57545850 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
57545897 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57545939 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:57545919 original size:93 final size:93
Alignment explanation
Indices: 57545760--57545930 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57545750 GGATGGTTGA
* *
57545760 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57545825 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57545853 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57545918 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57545931 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57552277 original size:40 final size:40
Alignment explanation
Indices: 57552222--57552436 Score: 289
Period size: 39 Copynumber: 5.5 Consensus size: 40
57552212 TGGATGATAA
* * *
57552222 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
57552262 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
57552302 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57552341 -CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57552380 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57552419 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57552437 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
38 25 0.16
39 70 0.44
40 64 0.40
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.