Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 208 of 444
Found at i:57900522 original size:40 final size:39
Alignment explanation
Indices: 57900470--57900590 Score: 146
Period size: 40 Copynumber: 3.2 Consensus size: 39
57900460 TAGTGCTAAT
57900470 CCGAA-GCTTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
57900508 CCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAG-A
1 CCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
57900547 CCGAAGGCATTTGTG--AGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGC-TTTGTGCTAG-TGACTATATCCGGGCTAAGTC
57900584 CCGAAGG
1 CCGAAGG
57900591 TACTTGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
36 6 0.08
37 16 0.22
38 7 0.10
39 16 0.22
40 28 0.38
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
CCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:57909040 original size:40 final size:40
Alignment explanation
Indices: 57908982--57909202 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
57908972 TATTCGAATG
*
57908982 ATATCCGGG-TAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
57909021 ATATCCGGGCAAAGTCCCGAAGGCATTTGTGCTATTGTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
57909061 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
57909101 ATATCCGGGCTAAGTCCCGAAGCCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
57909141 ATATCCGGGCTAAGACTCGAAGGCATTTGTGTTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
57909181 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
57909203 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 22 0.14
40 137 0.85
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:57913777 original size:46 final size:46
Alignment explanation
Indices: 57913727--57913902 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
57913717 TGGTTGAGCA
*
57913727 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
57913773 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57913818 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57913866 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57913903 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57913883 original size:93 final size:93
Alignment explanation
Indices: 57913724--57913895 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
57913714 GGATGGTTGA
* * *
57913724 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57913789 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
57913817 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57913882 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57913896 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:57916230 original size:43 final size:43
Alignment explanation
Indices: 57916164--57916320 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
57916154 AGCTCATACA
* *
57916164 ATGCCAATGTCCCAGACGTGGTCTTACATGTCATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * * * *
57916207 ATGCCACTGTCCTAGACAAGGTCTTACATGAAATCAAGTA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * * *
57916249 ATGCCAATGTCTCAGACGTGGTCTCACATGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGT-AATCA-AATATCG
*
57916293 ATGCCAATGTCCCAGTCATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
57916321 CGATAACACA
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 27 0.30
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:57916765 original size:17 final size:17
Alignment explanation
Indices: 57916745--57916781 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
57916735 ATCCCAAAAT
57916745 ACACAAAATTTCCTTAG
1 ACACAAAATTTCCTTAG
57916762 ACACAAAATTTCCTTAG
1 ACACAAAATTTCCTTAG
57916779 ACA
1 ACA
57916782 TATGTTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.27
Consensus pattern (17 bp):
ACACAAAATTTCCTTAG
Found at i:57919792 original size:13 final size:13
Alignment explanation
Indices: 57919776--57919819 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
57919766 TGTTATAATT
*
57919776 AAATGCTGTTATG
1 AAATGCTATTATG
* * *
57919789 AAATGTTATAATT
1 AAATGCTATTATG
57919802 AAATGCTATTATG
1 AAATGCTATTATG
57919815 AAATG
1 AAATG
57919820 TTAAATTTGG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.39
Consensus pattern (13 bp):
AAATGCTATTATG
Found at i:57919800 original size:26 final size:26
Alignment explanation
Indices: 57919764--57919826 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
57919754 TTGATAGTTT
*
57919764 AATGTTATAATTAAATGCTGTTATGA
1 AATGTTATAATTAAATGCTATTATGA
57919790 AATGTTATAATTAAATGCTATTATGA
1 AATGTTATAATTAAATGCTATTATGA
57919816 AATGTTA-AATT
1 AATGTTATAATT
57919827 TGGCTATGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (26 bp):
AATGTTATAATTAAATGCTATTATGA
Found at i:57927974 original size:26 final size:27
Alignment explanation
Indices: 57927945--57927998 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
57927935 TTTAACCTCA
*
57927945 AGGGGAAAAT-AGTCATTTTACCCTAC
1 AGGGGAAAATCAGTCATTTTACACTAC
* **
57927971 AGGGGTATGTCAGTCATTTTACACTAC
1 AGGGGAAAATCAGTCATTTTACACTAC
57927998 A
1 A
57927999 AGGGTATTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (27 bp):
AGGGGAAAATCAGTCATTTTACACTAC
Found at i:57928016 original size:27 final size:27
Alignment explanation
Indices: 57927959--57928101 Score: 132
Period size: 27 Copynumber: 5.3 Consensus size: 27
57927949 GAAAATAGTC
* * * *
57927959 ATTTTACCCTACAGGGGTATGTC-AGTC
1 ATTTTACACTACAAGGGTATTTCGA-TA
57927986 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
*
57928013 ATTTTACACTACAATGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * *
57928040 ATTTTACA-AATCAAGAGTGTTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* *
57928067 ATTTTACA-AATCGAGGGTATTTC-AGTA
1 ATTTTACACTA-CAAGGGTATTTCGA-TA
57928094 ATTTTACA
1 ATTTTACA
57928102 AATTAAAGGT
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 98 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:57928017 original size:54 final size:54
Alignment explanation
Indices: 57927959--57928235 Score: 142
Period size: 54 Copynumber: 5.1 Consensus size: 54
57927949 GAAAATAGTC
* * * * *
57927959 ATTTTACCCTACAGGGGTATGTC-AGTCATTTTAC-ACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGA-TAATTTTACAAAT-CAAGAGTATTTCGATA
* * *
57928013 ATTTTACACTACAATGGTATTTCGATAATTTTACAAATCAAGAGTGTTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACAAATCAAGAGTATTTCGATA
* * * * * *
57928067 ATTTTACA-AATCGAGGGTATTTC-AGTAATTTTACAAATTAA-AGGTATTTTGGTA
1 ATTTTACACTA-CAAGGGTATGTCGA-TAATTTTACAAATCAAGA-GTATTTCGATA
* * * * * * * * *
57928121 ATTTTACA-AATC-GGTGGTGTTTTGATAATTTTACAAATCGAGGGTGTTTCGGTA
1 ATTTTACACTA-CAAG-GGTATGTCGATAATTTTACAAATCAAGAGTATTTCGATA
* * * * * *
57928175 ATTTTACA-AATCGAGGGTGTTTC-AGTAATTTTACAAATCGAG-GTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCGA-TAATTTTACAAATCAAGAGTATTTCGATA
57928228 ATTTTACA
1 ATTTTACA
57928236 AATCGAGGGT
Statistics
Matches: 187, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
53 23 0.12
54 159 0.85
55 5 0.03
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATGTCGATAATTTTACAAATCAAGAGTATTTCGATA
Found at i:57928096 original size:81 final size:77
Alignment explanation
Indices: 57927999--57928258 Score: 265
Period size: 81 Copynumber: 3.2 Consensus size: 77
57927989 TTACACTACA
57927999 AGGGTATTTC-GATAATTTTACACTACAATGGTATTTCGATAATTTTACAAATCAAGAGTGTTTC
1 AGGGTATTTCAG-TAATTTTACA-TACAA-GGTATTTCGATAATTTTACAAATC-AG-GTGTTTC
57928063 GATAATTTTACAAATCG
61 GATAATTTTACAAATCG
* * * *
57928080 AGGGTATTTCAGTAATTTTACAAATTA-AAGGTATTTTGGTAATTTTACAAATCGGTGGTGTTTT
1 AGGGTATTTCAGTAATTTTAC--A-TACAAGGTATTTCGATAATTTTACAAATC--AGGTGTTTC
57928144 GATAATTTTACAAATCG
61 GATAATTTTACAAATCG
* * * * * *
57928161 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTC-AGTAATTTTACAAATCGAGGTATTTCG
1 AGGGTATTTCAGTAATTTTACATA-C-AAGGTATTTCGA-TAATTTTACAAATC-AGGTGTTTCG
*
57928225 GTAATTTTACAAATCG
62 ATAATTTTACAAATCG
*
57928241 AGGGTGTTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
57928259 CTCTTTATTA
Statistics
Matches: 153, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 1 0.01
80 40 0.26
81 104 0.68
82 4 0.03
83 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (77 bp):
AGGGTATTTCAGTAATTTTACATACAAGGTATTTCGATAATTTTACAAATCAGGTGTTTCGATAA
TTTTACAAATCG
Found at i:57928102 original size:27 final size:27
Alignment explanation
Indices: 57928038--57928258 Score: 270
Period size: 27 Copynumber: 8.2 Consensus size: 27
57928028 GGTATTTCGA
* *
57928038 TAATTTTACAAATCAAGAGTGTTTC-G
1 TAATTTTACAAATCGAGGGTGTTTCAG
*
57928064 ATAATTTTACAAATCGAGGGTATTTCAG
1 -TAATTTTACAAATCGAGGGTGTTTCAG
** * * **
57928092 TAATTTTACAAATTAAAGGTATTTTGG
1 TAATTTTACAAATCGAGGGTGTTTCAG
*
57928119 TAATTTTACAAATCG-GTGGTGTTT-TG
1 TAATTTTACAAATCGAG-GGTGTTTCAG
*
57928145 ATAATTTTACAAATCGAGGGTGTTTCGG
1 -TAATTTTACAAATCGAGGGTGTTTCAG
57928173 TAATTTTACAAATCGAGGGTGTTTCAG
1 TAATTTTACAAATCGAGGGTGTTTCAG
* *
57928200 TAATTTTACAAATCGA-GGTATTTCGG
1 TAATTTTACAAATCGAGGGTGTTTCAG
57928226 TAATTTTACAAATCGAGGGTGTTTCAG
1 TAATTTTACAAATCGAGGGTGTTTCAG
57928253 TAATTT
1 TAATTT
57928259 CTCTTTATTA
Statistics
Matches: 169, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
26 25 0.15
27 141 0.83
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTGTTTCAG
Found at i:57930565 original size:43 final size:43
Alignment explanation
Indices: 57930509--57930593 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
57930499 TTGTGAATCT
* * *
57930509 GATATATGTTTACAAGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATATGGTTACAAGTAAGACCATGTCTAGGAC-GTTGGCATC
* *
57930552 GATATGTGGTTACATGTAAGACCATGTCTAGGACGTTGGCAT
1 GATATATGGTTACAAGTAAGACCATGTCTAGGACGTTGGCAT
57930594 TGTATGGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (43 bp):
GATATATGGTTACAAGTAAGACCATGTCTAGGACGTTGGCATC
Found at i:57937960 original size:40 final size:40
Alignment explanation
Indices: 57937907--57938094 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
57937897 ATAACCACAA
* *
57937907 GCACAATTGCCTTCGGATCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGA-TATAGCAACTC
* * *
57937947 GCGCAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
57937987 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
57938027 GCACAAATTCCTTCGGGTCTTAACCCAGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
57938067 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
57938095 GTATCATTCA
Statistics
Matches: 129, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 125 0.97
41 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:57938010 original size:80 final size:78
Alignment explanation
Indices: 57937887--57938094 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 78
57937877 TCTTCGGAAT
* * * *
57937887 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGATCTTAACCCGAGTATAGCAACTCGCGC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCG-GTATAGCAACTCGCAC
57937951 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
*
57937966 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCAC
*
57938031 AAATTCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * * * *
57938046 TTAACCCAGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
57938095 GTATCATTCA
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 6 0.05
80 106 0.94
81 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACAA
ATGCCTTCGGGTC
Found at i:57940290 original size:28 final size:28
Alignment explanation
Indices: 57940253--57940326 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
57940243 GTTCAAATTG
* *
57940253 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
57940281 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
57940309 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
57940327 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:57948113 original size:46 final size:46
Alignment explanation
Indices: 57948060--57948235 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57948050 TATTTGGGCA
57948060 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57948106 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57948153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57948199 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57948236 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57948215 original size:93 final size:93
Alignment explanation
Indices: 57948056--57948227 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57948046 GGGATATTTG
* *
57948056 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57948121 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57948149 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57948214 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57948228 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57951201 original size:15 final size:15
Alignment explanation
Indices: 57951181--57951249 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
57951171 GTATCTTGGG
57951181 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
57951196 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
57951211 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
57951226 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
57951241 TTTCTTTAT
1 TTTCTTTAT
57951250 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:57951250 original size:30 final size:30
Alignment explanation
Indices: 57951172--57951259 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
57951162 CATAGTATCG
* * * *
57951172 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
57951202 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
57951232 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
57951260 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:57954244 original size:40 final size:40
Alignment explanation
Indices: 57954199--57954366 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
57954189 CGGAATACAA
57954199 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
57954239 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
57954279 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** *
57954319 CCGGATATAATTTCCAGCATAAATGTCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
57954359 CCGGATAT
1 CCGGATAT
57954367 CATTCAATTG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 103 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:57962350 original size:40 final size:40
Alignment explanation
Indices: 57962305--57962472 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
57962295 CGGAATACAA
57962305 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
57962345 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
57962385 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
57962425 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
57962465 CCGGATAT
1 CCGGATAT
57962473 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:57971078 original size:40 final size:40
Alignment explanation
Indices: 57971033--57971199 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
57971023 CGGAATATAA
57971033 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
57971073 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
57971113 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57971153 CCGGATATAATTC-C-AGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGG-TCTTAGC
57971192 CCGGATAT
1 CCGGATAT
57971200 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
39 29 0.28
40 74 0.71
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57978724 original size:40 final size:40
Alignment explanation
Indices: 57978634--57978887 Score: 429
Period size: 40 Copynumber: 6.4 Consensus size: 40
57978624 CGGATGTAAC
* * * *
57978634 AACCAGCACGAATGCCTTC-GGACTTAACCCGGTAATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
*
57978673 AACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
**
57978713 AACCCATACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
57978753 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
57978793 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
*
57978833 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
57978873 AACCCGCACGAATGC
1 AACCCGCACGAATGC
57978888 TGTGCACATA
Statistics
Matches: 203, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 17 0.08
40 186 0.92
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
Found at i:57990283 original size:40 final size:40
Alignment explanation
Indices: 57990238--57990465 Score: 341
Period size: 40 Copynumber: 5.7 Consensus size: 40
57990228 ATAACCACAA
* * * * *
57990238 GCACAATTACCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
57990278 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
57990318 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
57990358 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
57990398 GCACAAATGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
57990438 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
57990466 GTATCATTCA
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:57994464 original size:42 final size:44
Alignment explanation
Indices: 57994356--57994468 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
57994346 AGCTCGTACA
* * ** *
57994356 ATGCCAACGTCCCAGACGTGGTCTTAC-CTGTCATTAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCAAATATCG
* * * *
57994399 ATGCCATTGTCCTAGATAGGGTCTTACAC-GAAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCAAATATCG
*
57994441 ATGCCAATGTCCCAAACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
57994469 TGATACCACA
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
42 24 0.44
43 30 0.55
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCAAATATCG
Found at i:57998242 original size:13 final size:13
Alignment explanation
Indices: 57998224--57998248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57998214 CGCAAAGATG
57998224 TGTCATCACCAGA
1 TGTCATCACCAGA
57998237 TGTCATCACCAG
1 TGTCATCACCAG
57998249 TACATTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (13 bp):
TGTCATCACCAGA
Found at i:58007705 original size:13 final size:13
Alignment explanation
Indices: 58007689--58007714 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58007679 CTGGACACAC
58007689 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
58007702 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
58007715 CACACGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:58008947 original size:3 final size:3
Alignment explanation
Indices: 58008939--58008964 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
58008929 CTATAACCTC
58008939 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
58008965 TTTCCTAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:58015303 original size:40 final size:40
Alignment explanation
Indices: 58015191--58015343 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
58015181 GGATATAGCG
* * * * ***
58015191 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
58015231 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
58015271 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
58015311 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
58015344 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:58019774 original size:38 final size:35
Alignment explanation
Indices: 58019715--58019815 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
58019705 TCAATCATGC
*
58019715 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
58019754 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
58019785 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
58019816 ACTGGCCGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 27 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.19
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:58019776 original size:31 final size:31
Alignment explanation
Indices: 58019738--58019831 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
58019728 CCTTTTCATA
*
58019738 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
58019769 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
58019800 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
58019830 TT
1 TT
58019832 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 13 0.21
31 49 0.79
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:58020074 original size:24 final size:24
Alignment explanation
Indices: 58020023--58020141 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
58020013 GCTTTATCAT
*
58020023 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
58020048 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
58020072 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
58020095 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58020119 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58020142 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58020102 original size:47 final size:48
Alignment explanation
Indices: 58020023--58020141 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
58020013 GCTTTATCAT
*
58020023 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
58020072 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
58020119 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58020142 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:58020217 original size:20 final size:20
Alignment explanation
Indices: 58020192--58020251 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
58020182 TATGATTACC
58020192 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
58020212 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
58020232 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
58020252 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:58020326 original size:25 final size:25
Alignment explanation
Indices: 58020294--58020341 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
58020284 ATACATAAAC
* * *
58020294 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
58020319 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
58020342 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:58021625 original size:27 final size:27
Alignment explanation
Indices: 58021570--58021911 Score: 401
Period size: 27 Copynumber: 12.8 Consensus size: 27
58021560 GGGTATTTTA
* *
58021570 GTAATTTTGTAAATCGA--GTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58021595 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58021622 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58021649 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58021676 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58021703 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58021730 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* *
58021757 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
58021784 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
58021811 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
58021838 GTAATTCTATAAAT-GAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
58021864 GTAATTTTACAAAT-GAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
58021890 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
58021912 CTTTGGTAAT
Statistics
Matches: 281, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
25 16 0.06
26 49 0.17
27 214 0.76
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58021933 original size:27 final size:27
Alignment explanation
Indices: 58021863--58022138 Score: 224
Period size: 27 Copynumber: 10.3 Consensus size: 27
58021853 AGGGTAAAAC
****
58021863 GGTAATTTTACAAAT-GAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
58021889 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
58021916 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
58021943 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
58021970 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
58021997 GGTAATTTTACAAA-CTAGGGGTA-TTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
58022023 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
58022050 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
58022077 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
58022104 AGTAATTTTACAAAGC-AGGGGATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
58022130 GGTAATTTT
1 GGTAATTTT
58022139 GTAAACCAAA
Statistics
Matches: 214, Mismatches: 31, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 56 0.26
27 156 0.73
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:58022049 original size:53 final size:54
Alignment explanation
Indices: 58021972--58022138 Score: 232
Period size: 53 Copynumber: 3.1 Consensus size: 54
58021962 GGTATTTCAG
* *
58021972 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTGA
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
*
58022025 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
* * * * *
58022079 TAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGC-AGGGG-ATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGA
58022132 TAATTTT
1 TAATTTT
58022139 GTAAACCAAA
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 60 0.57
54 44 0.42
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
Found at i:58022063 original size:80 final size:80
Alignment explanation
Indices: 58021907--58022138 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 80
58021897 TATAAATCGA
* * * ** * *
58021907 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-AATAATTTTACAAACTAG-GGGTATTTT
* * *
58021970 AGTAATTTCACAAATTAG
63 GGTAATTTTACAAACTAG
*
58021988 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTGATAATTTTACAAACTAGGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTAATAATTTTACAAACTAGGGGTATTTTGGT
58022053 AATTTTACAAACTAG
66 AATTTTACAAACTAG
* * * *
58022068 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGC-AGGGG-ATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTAATAATTTTACAAA-CTAGGGGTATTTTG
58022131 GTAATTTT
64 GTAATTTT
58022139 GTAAACCAAA
Statistics
Matches: 131, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
80 76 0.58
81 50 0.38
82 5 0.04
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTAATAATTTTACAAACTAGGGGTATTTTGGT
AATTTTACAAACTAG
Found at i:58022154 original size:26 final size:26
Alignment explanation
Indices: 58021989--58022155 Score: 156
Period size: 27 Copynumber: 6.3 Consensus size: 26
58021979 ACAAATTAGG
* *
58021989 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
58022016 GGTA-TTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
58022042 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
58022069 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
58022095 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
* **
58022122 GGGATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
58022148 AGTATTTT
1 GGTATTTT
58022156 AAACATGGAT
Statistics
Matches: 121, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 51 0.42
27 70 0.58
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:58023375 original size:27 final size:27
Alignment explanation
Indices: 58023345--58023517 Score: 181
Period size: 27 Copynumber: 6.4 Consensus size: 27
58023335 CCTTAATCGA
58023345 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * * *
58023372 TAAAATAATTGTTTTGGCCTTAAGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
58023399 TGAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
58023426 TAAAATGAC-AGTCTTGCCCCTAT-ATGG
1 TAAAATGACTA-TTTTGCCCTTATGA-GG
58023453 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
58023480 TAAAATGACTGTTTTGCCCTTAT-ATGC
1 TAAAATGACTATTTTGCCCTTATGA-GG
58023507 TAAAATGACTA
1 TAAAATGACTA
58023518 AAATGCCCCT
Statistics
Matches: 120, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
26 1 0.01
27 117 0.98
28 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:58023417 original size:54 final size:54
Alignment explanation
Indices: 58023345--58023517 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 54
58023335 CCTTAATCGA
* * *
58023345 TAAAATGACTATTTTGCCCTTATGAGGTAAAATAATTGTTTTGGCCTTA-AGAGG
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATA-AGG
* * * * * * * *
58023399 TGAAATGATTGTTTTGCCCTTATGTGGTAAAATGACAGTCTTGCCCCTATATGG
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATAAGG
* *
58023453 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGC
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATAAGG
58023507 TAAAATGACTA
1 TAAAATGACTA
58023518 AAATGCCCCT
Statistics
Matches: 99, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 98 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATAAGG
Found at i:58026092 original size:40 final size:39
Alignment explanation
Indices: 58026026--58026170 Score: 147
Period size: 40 Copynumber: 3.8 Consensus size: 39
58026016 AAATTGAATG
*
58026026 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * ****
58026065 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* *
58026105 ATATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAAATT
58026143 -TATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
58026171 TGCACGTGAT
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 28 0.32
38 3 0.03
39 16 0.18
40 41 0.47
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAAATT
Found at i:58026157 original size:77 final size:78
Alignment explanation
Indices: 58026026--58026173 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 78
58026016 AAATTGAATG
*
58026026 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
58026091 TTGTGCTAGTGGCT
65 TTGTGCTAGTGGCT
* * *
58026105 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GACATT-TATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
58026167 TTTGTGC
64 ATTGTGC
58026174 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
77 29 0.47
78 5 0.08
79 17 0.27
80 11 0.18
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:58029100 original size:42 final size:43
Alignment explanation
Indices: 58029043--58029156 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
58029033 TATGATTTAA
* *
58029043 GTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATTTGATTTC
1 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTAC
58029085 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
*
58029128 CTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
1 GTGTAAGACC-CTGTCTGGGACAG-TGGCAT
58029157 TGTATGAACT
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
42 28 0.43
43 36 0.55
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
Found at i:58031266 original size:40 final size:39
Alignment explanation
Indices: 58031221--58031346 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
58031211 CGGAATATAA
*
58031221 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58031261 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * *
58031301 CCGGAT-GAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAGAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58031340 CCGGATA
1 CCGGATA
58031347 TAATTTCCAG
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
39 30 0.42
40 38 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATAGAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58031343 original size:39 final size:39
Alignment explanation
Indices: 58031237--58031346 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
58031227 ATAACCATGT
*** *
58031237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
*
58031277 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
*
58031316 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
58031347 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
38 2 0.03
39 30 0.49
40 29 0.48
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:58031370 original size:79 final size:79
Alignment explanation
Indices: 58031237--58031385 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 79
58031227 ATAACCATGT
*
58031237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
58031301 CCGGATGAGCCACTA
65 CCGGATGAGCCACTA
* * * * *
58031316 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
58031379 CCCGGAT
64 CCCGGAT
58031386 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.05
79 57 0.93
80 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGAGCCACTA
Found at i:58038452 original size:40 final size:39
Alignment explanation
Indices: 58038407--58038536 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
58038397 CGGAATATAA
58038407 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
58038447 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58038487 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58038527 CCGGATATAA
1 CCGGATATAA
58038537 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58038551 original size:40 final size:40
Alignment explanation
Indices: 58038423--58038574 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
58038413 ATAACCATGT
* * *
58038423 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
58038463 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
58038503 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
58038543 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
58038575 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:58038557 original size:80 final size:80
Alignment explanation
Indices: 58038423--58038572 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
58038413 ATAACCATGT
*
58038423 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
58038487 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
58038503 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
58038566 CCCGGAT
64 CCCGGAT
58038573 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:58040686 original size:70 final size:67
Alignment explanation
Indices: 58040565--58040705 Score: 185
Period size: 70 Copynumber: 2.1 Consensus size: 67
58040555 GGAGGAAGGT
* * *
58040565 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTATAAATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTATAAATATCTGTTCTGGTGACCTAGCCACAA
58040630 TA
66 TA
* * *
58040632 TCTGGCAGCCTCG-TGCAATCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCG---C-TATAAATATCTGTTCTGGTGACCTAGCC
58040696 ACAATA
62 ACAATA
58040702 TCTG
1 TCTG
58040706 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
66 17 0.27
67 13 0.20
69 1 0.02
70 33 0.52
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTATAAATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:58040702 original size:26 final size:27
Alignment explanation
Indices: 58040673--58040732 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
58040663 CCACATATAT
*
58040673 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
58040699 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
58040726 ATATCTG
1 ATATCTG
58040733 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:58052140 original size:40 final size:40
Alignment explanation
Indices: 58052074--58052240 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
58052064 AAATTGAATG
* *
58052074 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
* * * ***
58052113 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
*
58052153 ATATCCGGGCTAAGACCCGAAGGC-ATTAGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTA-TGCTG-GTAATT
** * * ** *
58052193 CGATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
58052233 ATATCCGG
1 ATATCCGG
58052241 TTATATTCCG
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
39 16 0.16
40 83 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGTAATT
Found at i:58056347 original size:27 final size:27
Alignment explanation
Indices: 58056317--58056461 Score: 123
Period size: 27 Copynumber: 5.4 Consensus size: 27
58056307 CCTTAATCGA
58056317 TAAAATGACTATTTTCCCCTTATGAGG
1 TAAAATGACTATTTTCCCCTTATGAGG
* * * * *
58056344 TAAAATGATTGTTTTGCCTTTATGTGG
1 TAAAATGACTATTTTCCCCTTATGAGG
* **
58056371 TAAAATGACAATCTCGCCCCTATATGA--
1 TAAAATGACTAT-TTTCCCCT-TATGAGG
* * * *
58056398 TAAAATGACTGTTCTACCCTTTTGAGG
1 TAAAATGACTATTTTCCCCTTATGAGG
* * *
58056425 TAAAATGACTACTTTGCCCTTATGTGG
1 TAAAATGACTATTTTCCCCTTATGAGG
58056452 TAAAATGACT
1 TAAAATGACT
58056462 GAAATGCCAC
Statistics
Matches: 90, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
25 4 0.04
26 6 0.07
27 72 0.80
28 4 0.04
29 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
TAAAATGACTATTTTCCCCTTATGAGG
Found at i:58056456 original size:54 final size:54
Alignment explanation
Indices: 58056317--58056462 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 54
58056307 CCTTAATCGA
* * * * ** *
58056317 TAAAATGACTATTTTCCCCTTATGAGGTAAAATGATTGTTTTGCCTTTATGTGG
1 TAAAATGACTAATTTGCCCTTATGTGGTAAAATGACTGTTTACCCTTTATGAGG
* * * *
58056371 TAAAATGAC-AATCTCGCCCCTATATGATAAAATGACTGTTCTACCCTTT-TGAGG
1 TAAAATGACTAAT-TTGCCCTTATGTGGTAAAATGACTGTT-TACCCTTTATGAGG
*
58056425 TAAAATGACTACTTTGCCCTTATGTGGTAAAATGACTG
1 TAAAATGACTAATTTGCCCTTATGTGGTAAAATGACTG
58056463 AAATGCCACT
Statistics
Matches: 73, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
53 2 0.03
54 63 0.86
55 8 0.11
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (54 bp):
TAAAATGACTAATTTGCCCTTATGTGGTAAAATGACTGTTTACCCTTTATGAGG
Found at i:58056489 original size:81 final size:81
Alignment explanation
Indices: 58056315--58056509 Score: 198
Period size: 81 Copynumber: 2.4 Consensus size: 81
58056305 ACCCTTAATC
* * * * ** *
58056315 GATAAAATGACTATTTTCCCCTTATGAGGTAAAATGATTGTTTTGCCTTTATGTGGTAAAATGAC
1 GATAAAATGACTGTTCTACCCTTATGAGGTAAAATGACTACTTTGCCCTTATGTGGTAAAATGAC
* * *
58056380 AATCTCGCCCCTATAT
66 AATATCGCCACTACAT
*
58056396 GATAAAATGACTGTTCTACCCTTTTGAGGTAAAATGACTACTTTGCCCTTATGTGGTAAAATGAC
1 GATAAAATGACTGTTCTACCCTTATGAGGTAAAATGACTACTTTGCCCTTATGTGGTAAAATGAC
58056461 TGAA-AT-GCCACTACAT
66 --AATATCGCCACTACAT
* * *
58056477 GGT-AAATCGACTGTTTTGCCCCTATATGAGGTA
1 GATAAAAT-GACTGTTCT-ACCCT-TATGAGGTA
58056510 TTTATATATA
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
80 4 0.04
81 75 0.80
82 5 0.05
83 10 0.11
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (81 bp):
GATAAAATGACTGTTCTACCCTTATGAGGTAAAATGACTACTTTGCCCTTATGTGGTAAAATGAC
AATATCGCCACTACAT
Found at i:58061311 original size:18 final size:20
Alignment explanation
Indices: 58061276--58061312 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58061266 TCCTTGTTTA
58061276 TCCCACTCTCTTCATCCATC
1 TCCCACTCTCTTCATCCATC
*
58061296 TCCCATTCT-TTC-TCCAT
1 TCCCACTCTCTTCATCCAT
58061313 AATTTCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 3 0.19
20 8 0.50
ACGTcount: A:0.14, C:0.46, G:0.00, T:0.41
Consensus pattern (20 bp):
TCCCACTCTCTTCATCCATC
Found at i:58061681 original size:30 final size:30
Alignment explanation
Indices: 58061633--58061700 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
58061623 TATAGGGGTC
* * *
58061633 ACATGGCCTTGTGCCTCACACGACCAAGAG
1 ACATGCCCGTGTGACTCACACGACCAAGAG
58061663 ACATGCCCGTGTGACTCACACGACCAAGAG
1 ACATGCCCGTGTGACTCACACGACCAAGAG
58061693 ACATGCCC
1 ACATGCCC
58061701 ATGTCTTAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.22, T:0.15
Consensus pattern (30 bp):
ACATGCCCGTGTGACTCACACGACCAAGAG
Found at i:58063182 original size:25 final size:25
Alignment explanation
Indices: 58063154--58063215 Score: 124
Period size: 25 Copynumber: 2.5 Consensus size: 25
58063144 ACGCTCTCAT
58063154 GAGCTATAAATCAGTATGCTTTCAC
1 GAGCTATAAATCAGTATGCTTTCAC
58063179 GAGCTATAAATCAGTATGCTTTCAC
1 GAGCTATAAATCAGTATGCTTTCAC
58063204 GAGCTATAAATC
1 GAGCTATAAATC
58063216 GGTAACCCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (25 bp):
GAGCTATAAATCAGTATGCTTTCAC
Found at i:58066695 original size:21 final size:22
Alignment explanation
Indices: 58066655--58066695 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
58066645 TTCCAAATAA
* *
58066655 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
58066677 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
58066696 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:58067931 original size:15 final size:16
Alignment explanation
Indices: 58067905--58067934 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
58067895 AGATATTCCA
58067905 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
58067921 ATTTA-TCCCATTTT
1 ATTTAGTCCCATTTT
58067935 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:58070797 original size:39 final size:39
Alignment explanation
Indices: 58070750--58070906 Score: 215
Period size: 39 Copynumber: 4.0 Consensus size: 39
58070740 AATGTTCGAG
58070750 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
58070789 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * * *
58070828 TGATATCCGGGCTAAGCACAAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
58070867 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
58070907 CCATAACTGG
Statistics
Matches: 101, Mismatches: 16, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:58083022 original size:40 final size:40
Alignment explanation
Indices: 58082948--58083166 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
58082938 AACCCAAGTA
* *
58082948 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* *
58082987 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
*
58083027 CCTTCGGGACTTAGCCCGGATATAG-CAACTATCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* *
58083067 CCTTCGGGACTTAG-CCGGGTATAGTCAATAGCAC-AACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAC-G
* *
58083106 CCTTCGGGACTTAGCCCGGATATAGTCA-TAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
*
58083144 CCTTCGGGACTTAGCCTGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58083167 CATCCGAATA
Statistics
Matches: 160, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 26 0.16
39 50 0.31
40 83 0.52
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
Found at i:58083099 original size:79 final size:79
Alignment explanation
Indices: 58082948--58083166 Score: 293
Period size: 79 Copynumber: 2.8 Consensus size: 79
58082938 AACCCAAGTA
* * *
58082948 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAACGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAG-CCGGATATAG
*
58083012 TCACTAGCACAAAAG
65 TCAATAGCACAAAAG
* *
58083027 CCTTCGGGACTTAGCCCGGATATAGCAACTATCACAAACGCCTTCGGGACTTAGCCGGGTATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAGCCGGATATAGT
**
58083092 CAATAGCACAACTG
66 CAATAGCACAAAAG
* *
58083106 CCTTCGGGACTTAGCCCGGATATAGTC-A-TAGCAC-CATGCCTTCGGGACTTAGCCTGGATAT
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAACGCCTTCGGGACTTAGCC-GGATAT
58083167 CATCCGAATA
Statistics
Matches: 125, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
77 18 0.14
78 10 0.08
79 60 0.48
80 37 0.30
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGACTTAGCCGGATATAGT
CAATAGCACAAAAG
Found at i:58083755 original size:17 final size:17
Alignment explanation
Indices: 58083711--58083746 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
58083701 TCATTAATGT
58083711 TTACAATATAATTACAA
1 TTACAATATAATTACAA
58083728 TTACAATATAATTACAA
1 TTACAATATAATTACAA
58083745 TT
1 TT
58083747 TCCCTATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (17 bp):
TTACAATATAATTACAA
Found at i:58089476 original size:66 final size:66
Alignment explanation
Indices: 58089370--58089502 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
58089360 AGGAGGGAGT
58089370 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAACTATATAAGCAAACATAA
1 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAACTATATAAGCAAACATAA
58089435 A
66 A
58089436 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAACTATATAAGCAAACATAA
1 AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAACTATATAAGCAAACATAA
58089501 A
66 A
58089502 A
1 A
58089503 CATCATTTGC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (66 bp):
AAGCATAAATGCTTAGTAAGTTCACATGCAAATAGCAAGTAACATAACTATATAAGCAAACATAA
A
Found at i:58089858 original size:46 final size:46
Alignment explanation
Indices: 58089776--58089950 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
58089766 TGTAACCCGC
* * *
58089776 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * *
58089822 CCATGAGTGAACTCGGACTCAACTCAACAAGTTCGGGTGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-G-C-ATTTGCAT
* * * *
58089872 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
58089915 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
58089951 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:58089896 original size:93 final size:93
Alignment explanation
Indices: 58089783--58089955 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
58089773 CGCCCATAAG
* * * *
58089783 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
58089848 ACAAGTTCGGGTGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
*
58089876 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
58089941 ACGAGTTCGGATGCC
66 ACAAGTTCGGATGCC
58089956 CAAACATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:58094352 original size:39 final size:40
Alignment explanation
Indices: 58094298--58094516 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
58094288 AACCCAAGTA
* *
58094298 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACG
* * *
58094337 CCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACG
*
58094377 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACG
*
58094417 CCTTCGGGACTTAG-CCGGGTATAGTCAA-TAGCAC-AACTG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAAC-G
* *
58094456 CC-TCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAACG
58094494 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58094517 CATCCGAATA
Statistics
Matches: 160, Mismatches: 14, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 18 0.11
39 67 0.42
40 75 0.47
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACG
Found at i:58101554 original size:27 final size:27
Alignment explanation
Indices: 58101522--58101584 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
58101512 CTCGATTTAC
**
58101522 AAAATTATTGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
58101549 AGAATTACCGAGATACCTTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
58101576 AAAATTACC
1 AAAATTACC
58101585 ATTTTGCCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:58102228 original size:25 final size:25
Alignment explanation
Indices: 58102200--58102262 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
58102190 CATTCACATT
* *
58102200 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
58102225 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
58102250 TTGATTCTGATTC
1 CTGATTCTGATTC
58102263 ACATTTTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:58107002 original size:55 final size:55
Alignment explanation
Indices: 58106909--58107031 Score: 201
Period size: 55 Copynumber: 2.2 Consensus size: 55
58106899 TTGCTTCTCC
* *
58106909 CACGCCCGTGTTAAATTGACAGGTTCACCTACGGTTTCAAAACACGGGCGTGTTA
1 CACGCCCGTGTTAAATTGACAGGTTCACCCACGATTTCAAAACACGGGCGTGTTA
* * *
58106964 CACGCCCGTGTTAAATTGACAGGTTCACCCACGATTTCAAAACATGGGTGTGTTG
1 CACGCCCGTGTTAAATTGACAGGTTCACCCACGATTTCAAAACACGGGCGTGTTA
58107019 CACGCCCGTGTTA
1 CACGCCCGTGTTA
58107032 TTTTGGTAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTAAATTGACAGGTTCACCCACGATTTCAAAACACGGGCGTGTTA
Found at i:58122513 original size:30 final size:30
Alignment explanation
Indices: 58122479--58122535 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
58122469 TCCTTAACTC
58122479 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
58122509 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTGGCAAAATTACAATTTTGCC
58122536 TCTAGGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:58126898 original size:27 final size:26
Alignment explanation
Indices: 58126831--58126945 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
58126821 TGGAGGAAGC
58126831 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
58126858 GTTTCTGGTGGCTCTGCCACAAATATCT
1 G-TTCTGGTGGCTCTGCCAC-AATATCT
* *
58126886 GTTCTGATGGCTCCGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
58126912 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
58126939 GTTCTGG
1 GTTCTGG
58126946 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.17
27 38 0.49
28 27 0.35
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:58127456 original size:16 final size:16
Alignment explanation
Indices: 58127435--58127467 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
58127425 GATTTAAATG
58127435 TTTGAAATTGAATAGC
1 TTTGAAATTGAATAGC
58127451 TTTGAAATTGAATAGC
1 TTTGAAATTGAATAGC
58127467 T
1 T
58127468 CTAGGGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.39
Consensus pattern (16 bp):
TTTGAAATTGAATAGC
Found at i:58130092 original size:27 final size:28
Alignment explanation
Indices: 58130036--58130105 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
58130026 AAATTTGTAC
58130036 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
58130064 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
58130091 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58130106 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:58130116 original size:27 final size:27
Alignment explanation
Indices: 58130036--58130117 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
58130026 AAATTTGTAC
* *
58130036 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
58130064 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
58130091 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
58130118 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:58134398 original size:40 final size:39
Alignment explanation
Indices: 58134340--58134507 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 39
58134330 CAATTGAATG
*
58134340 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTG-CTT
*
58134381 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGCTT
* * * *
58134420 ATATCCGGGCTAATACCTGAAGGCATTTGTG-AGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTG-C-TT
* *
58134460 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGCTT
58134500 ATATCCGG
1 ATATCCGG
58134508 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 7 0.07
40 89 0.85
41 4 0.04
42 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGCTT
Found at i:58141092 original size:27 final size:28
Alignment explanation
Indices: 58141036--58141105 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
58141026 AAATTTGTAC
58141036 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
58141064 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
58141091 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58141106 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:58141116 original size:27 final size:27
Alignment explanation
Indices: 58141036--58141117 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
58141026 AAATTTGTAC
* *
58141036 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
58141064 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
58141091 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
58141118 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:58147778 original size:40 final size:40
Alignment explanation
Indices: 58147733--58147822 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 40
58147723 CGGAATACAA
* *
58147733 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TCGCAC-AATTGCCTTCGGGTCTTAAC
*
58147773 CCGGATAGAACAACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAAC
58147813 CCGGATATAA
1 CCGGATATAA
58147823 TTTCCAGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 3 0.07
40 41 0.93
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAAC
Found at i:58150686 original size:39 final size:39
Alignment explanation
Indices: 58150635--58150724 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
58150625 GGTATTGGAA
* * *
58150635 AAATATATCCGGACTTGAAGTCCACGGGCTTTA-TGCTGG
1 AAATATATCCGGACTTAAAGTCCACAGGC-TAAGTGCTGG
*
58150674 AAATATATCCGGACTTAAAGTCCGCAGGCTAAGTGCTGG
1 AAATATATCCGGACTTAAAGTCCACAGGCTAAGTGCTGG
*
58150713 AAAAATATCCGG
1 AAATATATCCGG
58150725 GCTAAGTCCC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.04
39 43 0.96
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (39 bp):
AAATATATCCGGACTTAAAGTCCACAGGCTAAGTGCTGG
Found at i:58150749 original size:39 final size:39
Alignment explanation
Indices: 58150717--58151078 Score: 571
Period size: 39 Copynumber: 9.3 Consensus size: 39
58150707 TGCTGGAAAA
* * *
58150717 ATATCCGGGCTAAGTCCCGATGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
* *
58150756 ATATCCGGGCTAATTCCTGAAGGCATTCGTACTGGTATT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
58150795 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
58150834 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
* * **
58150873 ATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
*
58150912 ATATTCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
**
58150951 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
* *
58150990 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
* *
58151029 ATATCCGAGCTAAGTCCTGAAGGCATTCGTGCTAGTATT
1 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
*
58151068 ATATCTGGGCT
1 ATATCCGGGCT
58151079 TAAAGTCCCG
Statistics
Matches: 298, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 298 1.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
Found at i:58153584 original size:42 final size:42
Alignment explanation
Indices: 58153525--58153626 Score: 161
Period size: 42 Copynumber: 2.4 Consensus size: 42
58153515 GCAGATACTA
58153525 GACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATT-TCGACC
1 GACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCT-GACC
* *
58153567 GACAGCTTGTGTGAGCAGCATTGTTTAGCTTACATTCTGACC
1 GACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCTGACC
*
58153609 GACAGCTTGTGTTAGCAG
1 GACAGCTTGTGTGAGCAG
58153627 ACCCATTCTA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (42 bp):
GACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCTGACC
Found at i:58170073 original size:40 final size:40
Alignment explanation
Indices: 58170029--58170138 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
58170019 TTCACAATTT
* *
58170029 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
58170069 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
58170109 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
58170139 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:58178122 original size:40 final size:40
Alignment explanation
Indices: 58178078--58178187 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
58178068 TTCACAATTT
* *
58178078 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
58178118 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
58178158 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
58178188 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:58184481 original size:40 final size:40
Alignment explanation
Indices: 58184422--58184510 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
58184412 AACTCCATAC
*
58184422 TAGA-TTCAGACTATATCAGAACAGGAGCCTGAGTCAGAA
1 TAGACTTCAGACTATATCAGAACAGGAGACTGAGTCAGAA
* *
58184461 TAGACTTCAGACTGTATCAGAACAGGAGACTGGGTCAGAA
1 TAGACTTCAGACTATATCAGAACAGGAGACTGAGTCAGAA
* *
58184501 CAAACTTCAG
1 TAGACTTCAG
58184511 CTTTTCAAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 4 0.09
40 40 0.91
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (40 bp):
TAGACTTCAGACTATATCAGAACAGGAGACTGAGTCAGAA
Found at i:58185903 original size:37 final size:37
Alignment explanation
Indices: 58185846--58185920 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
58185836 AAAGTTCAGA
*
58185846 TACAGTACTAGCTACATAGGAGTACGTAGAACCTATG
1 TACAATACTAGCTACATAGGAGTACGTAGAACCTATG
* *
58185883 TACAATACTAGCTACGTAGGAGTGCGTAGAACCTATG
1 TACAATACTAGCTACATAGGAGTACGTAGAACCTATG
58185920 T
1 T
58185921 CTATCAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (37 bp):
TACAATACTAGCTACATAGGAGTACGTAGAACCTATG
Found at i:58188059 original size:28 final size:28
Alignment explanation
Indices: 58188027--58188125 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
58188017 GCAATAAGCC
*
58188027 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
58188055 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
58188083 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
58188112 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58188126 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:58195742 original size:28 final size:28
Alignment explanation
Indices: 58195710--58195808 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
58195700 GCAATAAGCC
*
58195710 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
58195738 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
58195766 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
58195795 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58195809 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:58202062 original size:50 final size:49
Alignment explanation
Indices: 58201954--58202184 Score: 250
Period size: 50 Copynumber: 4.7 Consensus size: 49
58201944 CAGGTACGCA
* * * ** *
58201954 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATATGGTACACG
*
58202003 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATATGGTACACG
* ** * *
58202053 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-GTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAACAATAT--GGTACACG
* * ** *
58202104 TAGTAG-CTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATATGGTACACG
*
58202152 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
58202185 TCACAATAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 12 0.08
49 59 0.39
50 69 0.45
51 12 0.08
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATATGGTACACG
Found at i:58202150 original size:99 final size:99
Alignment explanation
Indices: 58201954--58202184 Score: 313
Period size: 99 Copynumber: 2.3 Consensus size: 99
58201944 CAGGTACGCA
* * * *
58201954 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
58202019 GTACTACACACGTGACCTAACAATATGATACACG
66 GTACTACACACGCGACCTAACAATATGATACACG
* * *
58202053 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAG-CTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** * *
58202117 TAGTACTACACATGCGACC-AATTATCTGGTACACG
64 TAGTACTACACACGCGACCTAACAATATGATACACG
58202152 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTACACTTAGTACTACACACGTGACC
58202185 TCACAATAGC
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
98 1 0.01
99 70 0.61
100 27 0.23
101 17 0.15
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATATGATACACG
Found at i:58210813 original size:2 final size:2
Alignment explanation
Indices: 58210806--58210832 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
58210796 CATTTTAACT
58210806 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
58210833 CACAAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:58216352 original size:40 final size:40
Alignment explanation
Indices: 58216297--58216466 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
58216287 AACATTGGAA
58216297 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
58216337 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
58216377 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
58216416 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
58216457 CTATATCCGG
1 ATATATCCGG
58216467 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:58223695 original size:44 final size:42
Alignment explanation
Indices: 58223645--58223803 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
58223635 TATGTGTTAT
58223645 CGTGTAAGACCAAGTCTAGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCAAGTCTAGGACATTGGCATCGA-TT-TGATTTA
* *
58223689 CGTGTAAGACCATGTCTAGGACATTAGCATCGTATTTGATTT-
1 CGTGTAAGACCAAGTCTAGGACATTGGCATCG-ATTTGATTTA
* ** * **
58223731 CGCGTAAGACCCTGTCTGGGACAAAGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAAGTCTAGGACATTGGCATCG--ATTTGATTTA
* * *
58223774 CATGTAAGACCACA-TTTAGGACGTTGGCAT
1 CGTGTAAGACCA-AGTCTAGGACATTGGCAT
58223804 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.30
43 33 0.35
44 32 0.34
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCAAGTCTAGGACATTGGCATCGATTTGATTTA
Found at i:58223753 original size:42 final size:43
Alignment explanation
Indices: 58223648--58223785 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 43
58223638 GTGTTATCGT
* * *
58223648 GTAAGACCAAGTCTAGGACATTGGCATCG-ACTTATGATTTACGT
1 GTAAGACCATGTCTAGGACATTAGCATCGTA-TT-TGATTTACGC
58223692 GTAAGACCATGTCTAGGACATTAGCATCGTATTTGATTT-CGC
1 GTAAGACCATGTCTAGGACATTAGCATCGTATTTGATTTACGC
* * * **
58223734 GTAAGACCCTGTCTGGGACA-AAGGCATCGATATTTGA-TTACAT
1 GTAAGACCATGTCTAGGACATTA-GCATCG-TATTTGATTTACGC
58223777 GTAAGACCA
1 GTAAGACCA
58223786 CATTTAGGAC
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.35
43 22 0.27
44 29 0.36
45 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACATTAGCATCGTATTTGATTTACGC
Found at i:58226922 original size:27 final size:28
Alignment explanation
Indices: 58226865--58226934 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58226855 AAATTTGTAC
**
58226865 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
58226893 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
58226920 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58226935 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:58226943 original size:27 final size:27
Alignment explanation
Indices: 58226865--58226946 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
58226855 AAATTTGTAC
* *
58226865 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
58226893 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
58226920 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
58226947 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:58230876 original size:27 final size:28
Alignment explanation
Indices: 58230819--58230888 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58230809 AAATTTGTAC
**
58230819 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
58230847 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
58230874 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58230889 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:58230897 original size:27 final size:27
Alignment explanation
Indices: 58230819--58230900 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
58230809 AAATTTGTAC
* *
58230819 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
58230847 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
58230874 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
58230901 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:58238945 original size:27 final size:28
Alignment explanation
Indices: 58238888--58238957 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58238878 AAATTTGTAC
**
58238888 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
58238916 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
58238943 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58238958 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:58238966 original size:27 final size:27
Alignment explanation
Indices: 58238888--58238969 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
58238878 AAATTTGTAC
* *
58238888 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
58238916 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
58238943 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
58238970 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:58251022 original size:21 final size:20
Alignment explanation
Indices: 58250993--58251031 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
58250983 CTCTTAAAAC
*
58250993 AGGGCACACACCTGTGTGTA
1 AGGGCACACACCCGTGTGTA
*
58251013 AGGGCGACACGCCCGTGTG
1 AGGGC-ACACACCCGTGTG
58251032 GTCATTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.21, C:0.28, G:0.36, T:0.15
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGTA
Found at i:58253886 original size:28 final size:29
Alignment explanation
Indices: 58253799--58253889 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
58253789 GAAAGCATGT
* *
58253799 ATATGAATGTGATTTAGGCCTAATGGGCT
1 ATATGAATGAGATTTAGGCCTAATGGGCC
* *
58253828 ATACGAAT-ATGATTTAGGCCTAATGGACC
1 ATATGAATGA-GATTTAGGCCTAATGGGCC
* *
58253857 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTAGGCCTAATGGGCC
58253885 ATATG
1 ATATG
58253890 CATGTATGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 18 0.35
29 33 0.63
30 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATGAATGAGATTTAGGCCTAATGGGCC
Found at i:58255233 original size:48 final size:47
Alignment explanation
Indices: 58255158--58255372 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 47
58255148 AAGTTGACAC
* * *
58255158 CATGTCTCAGACAGGTCTTACAGTAGCTTGTATATCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCACGAGGCCGATG
* * **
58255206 CATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCA--A-TACGAATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCACGAGGCCG-ATG
* * * * *
58255252 TATGTCCCAGACATGTCTTACATTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCACGAGGCCGATG
* * * * * * *
58255300 CATGTCCCAGACATGTCTTACACTGGCTCTCAT-GC-TGTGGCTGATA
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCACGAGGCCGATG
*
58255346 CATGTCCCAGACATGTCTTACATTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
58255373 ACGCATATCA
Statistics
Matches: 134, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.02
46 64 0.48
47 1 0.01
48 62 0.46
49 4 0.03
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCACGAGGCCGATG
Found at i:58255287 original size:94 final size:94
Alignment explanation
Indices: 58255159--58255329 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 94
58255149 AGTTGACACC
* **
58255159 ATGTCTCAGACAGGTCTTACAGTAGCTTGTATATCACGAGGCCGATGCATGTCCCAGACATGTCT
1 ATGTCCCAGACAGGTCTTACAGTAGCTTAAATATCACGAGGCCGATGCATGTCCCAGACATGTCT
58255224 TACACTAGCTCTTGTCTCAATACGAATGT
66 TACACTAGCTCTTGTCTCAATACGAATGT
* * * *
58255253 ATGTCCCAGACATGTCTTACATTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACATGTCT
1 ATGTCCCAGACAGGTCTTACAGTAGCTTAAATATCACGAGGCCGATGCATGTCCCAGACATGTCT
*
58255318 TACACTGGCTCT
66 TACACTAGCTCT
58255330 CATGCTGTGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 69 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (94 bp):
ATGTCCCAGACAGGTCTTACAGTAGCTTAAATATCACGAGGCCGATGCATGTCCCAGACATGTCT
TACACTAGCTCTTGTCTCAATACGAATGT
Found at i:58255381 original size:94 final size:93
Alignment explanation
Indices: 58255158--58255372 Score: 256
Period size: 94 Copynumber: 2.3 Consensus size: 93
58255148 AAGTTGACAC
* * * *
58255158 CATGTCTCAGACAGGTCTTACAGTAGCTTGTATATCACGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACATTAGCTTGAATATCACGAGGCCGATGCATGTCCCAGACATGTC
*
58255223 TTACACTAGCTCTTGTCTCAATACGAATG
66 TTACACTAGCTCTTGTCT-AATACGAATA
* * * *
58255252 TATGTCCCAGACATGTCTTACATTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACATTAGCTTGAATATCACGAGGCCGATGCATGTCCCAGACATGTC
* * *
58255317 TTACACTGGCTCTCATG-CT-GTGGCTG-ATA
66 TTACACTAGCTCT--TGTCTAAT-AC-GAATA
58255346 CATGTCCCAGACATGTCTTACATTAGC
1 CATGTCCCAGACATGTCTTACATTAGC
58255373 ACGCATATCA
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
93 1 0.01
94 97 0.94
95 3 0.03
96 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACATTAGCTTGAATATCACGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCTTGTCTAATACGAATA
Found at i:58261193 original size:40 final size:39
Alignment explanation
Indices: 58261148--58261355 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
58261138 CGGAATACAA
*
58261148 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58261188 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58261228 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
58261268 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTCAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
58261308 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
58261348 CCGGATAT
1 CCGGATAT
58261356 CATTCAATTG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58261288 original size:80 final size:81
Alignment explanation
Indices: 58261148--58261353 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
58261138 CGGAATACAA
* * *
58261148 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
* *
58261212 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATCAAC
* * *
58261228 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
58261291 TGCCTTCGGGTCTCAAC
65 TGCCTTCGGGTATCAAC
** * ** * *
58261308 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
58261354 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 103 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATCAAC
Found at i:58264853 original size:40 final size:40
Alignment explanation
Indices: 58264808--58264937 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
58264798 CGGAATACAA
58264808 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
58264848 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
58264888 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
58264928 CCGGATATAA
1 CCGGATATAA
58264938 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:58272902 original size:40 final size:39
Alignment explanation
Indices: 58272857--58273064 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
58272847 CGGAATACAA
*
58272857 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58272897 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58272937 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
58272977 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
58273017 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
58273057 CCGGATAT
1 CCGGATAT
58273065 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58272997 original size:80 final size:81
Alignment explanation
Indices: 58272857--58273062 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
58272847 CGGAATACAA
* * *
58272857 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
58272921 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
58272937 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
58273000 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
58273017 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
58273063 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:58279853 original size:40 final size:40
Alignment explanation
Indices: 58279726--58279855 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
58279716 ATGCTGGAAA
* *
58279726 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
58279766 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
58279806 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
58279846 TTATATCCGG
1 TTATATCCGG
58279856 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:58287887 original size:40 final size:40
Alignment explanation
Indices: 58287760--58287889 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
58287750 ATGCTGGAAA
* * *
58287760 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
58287800 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
58287840 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
58287880 TTATATCCGG
1 TTATATCCGG
58287890 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:58289515 original size:40 final size:39
Alignment explanation
Indices: 58289471--58289555 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
58289461 AAGTGACTAT
* *
58289471 ATCCGGACTAAGATCCAAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGACTAAG-CCCAAAGGCATTCGTGCGAGTTAATAA
* * * *
58289511 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCAAAGGCATTCGTGCGAGTTAATAA
*
58289550 ACCCGG
1 ATCCGG
58289556 GTTAAGGCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 27 0.71
40 11 0.29
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGCCCAAAGGCATTCGTGCGAGTTAATAA
Found at i:58289541 original size:39 final size:39
Alignment explanation
Indices: 58289432--58289561 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
58289422 TTGAATGATG
* * * *
58289432 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCTTTGTGC-GAGTTACTAAA
* * * * *
58289472 TCCGGACTAAGATCCAAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAGACCCGAAGGC-TTTGTGCGAGTTACTAAA
58289512 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGC-TTTGTGCGAGTTACTAAA
* *
58289551 CCCGGGTTAAG
1 TCCGGGCTAAG
58289562 GCATTCGTGC
Statistics
Matches: 72, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
39 32 0.44
40 34 0.47
41 6 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGACCCGAAGGCTTTGTGCGAGTTACTAAA
Found at i:58292288 original size:49 final size:47
Alignment explanation
Indices: 58292182--58292316 Score: 155
Period size: 49 Copynumber: 2.8 Consensus size: 47
58292172 ACATGGGTTA
* *
58292182 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCGTAT
1 AGATGTCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTATCGTAT
** *
58292230 AGGCGGTCGATGCCATGTCCCATACAGGTCTTACACTGGCTCGCATC-TAT
1 A-GATGTCGATGCCATGTCCCAAACAGGTCTTACACTGGCT---ATCGTAT
* *
58292280 AGATGTCGATGCCATGTCCCAGACAGGTTTTACACTG
1 AGATGTCGATGCCATGTCCCAAACAGGTCTTACACTG
58292317 ACACACAACA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
48 16 0.22
49 52 0.70
50 4 0.05
51 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.27
Consensus pattern (47 bp):
AGATGTCGATGCCATGTCCCAAACAGGTCTTACACTGGCTATCGTAT
Done.