Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 210 of 444
Found at i:58617060 original size:71 final size:72
Alignment explanation
Indices: 58616959--58617102 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
58616949 TGCTTTATCA
*
58616959 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
58617024 GCCCTTT
66 GCCCTTT
* * **
58617031 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
58617094 AGCCCTTT
65 AGCCCTTT
58617102 T
1 T
58617103 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:58617178 original size:20 final size:20
Alignment explanation
Indices: 58617153--58617191 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
58617143 TATGATTACA
58617153 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
*
58617173 TCATGTGCATCTCATACAT
1 TCATGTGCATATCATACAT
58617192 ACCATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:58618551 original size:27 final size:27
Alignment explanation
Indices: 58618522--58619128 Score: 735
Period size: 27 Copynumber: 22.6 Consensus size: 27
58618512 TGGTATTTTA
* *
58618522 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58618549 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58618576 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58618603 GAAATACTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58618630 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58618657 ATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58618683 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
58618710 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
58618737 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
58618764 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
58618791 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58618818 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58618845 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
58618872 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
58618899 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
58618926 GTAATTCTGTAAA-CTGAGGGT-AAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
58618952 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
58618979 GTAATT-TACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
58619005 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
58619032 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
58619059 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
58619086 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
58619113 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
58619129 GGAGTACTTT
Statistics
Matches: 507, Mismatches: 60, Indels: 26
0.85 0.10 0.04
Matches are distributed among these distances:
26 70 0.14
27 434 0.86
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58621195 original size:20 final size:20
Alignment explanation
Indices: 58621172--58621210 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
58621162 CTCCCATCAG
58621172 CTCACTTGAGCTCAATTTAC
1 CTCACTTGAGCTCAATTTAC
58621192 CTCACTTGAGCTCAATTTA
1 CTCACTTGAGCTCAATTTA
58621211 GCTCGTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (20 bp):
CTCACTTGAGCTCAATTTAC
Found at i:58621230 original size:21 final size:20
Alignment explanation
Indices: 58621177--58621246 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
58621167 ATCAGCTCAC
* **
58621177 TTGAGCTCAATTTACCTCAC
1 TTGAGCTCAATTTAGCTCGT
58621197 TTGAGCTCAATTTAGCTCGT
1 TTGAGCTCAATTTAGCTCGT
*
58621217 TTGAGTTCGAATTTAGCTCGT
1 TTGAGCTC-AATTTAGCTCGT
*
58621238 TTTAGCTCA
1 TTGAGCTCA
58621247 TTCCTACTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 25 0.58
21 18 0.42
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (20 bp):
TTGAGCTCAATTTAGCTCGT
Found at i:58627988 original size:40 final size:40
Alignment explanation
Indices: 58627933--58628096 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
58627923 TGAATGATAC
* * * *
58627933 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* *
58627973 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTAAAT
* * **
58628013 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* * *
58628053 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
58628093 CCGG
1 CCGG
58628097 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 96 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
Found at i:58636068 original size:40 final size:40
Alignment explanation
Indices: 58636013--58636176 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
58636003 TGAATGATAC
* * * *
58636013 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* *
58636053 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTAAAT
* * **
58636093 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* * *
58636133 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
58636173 CCGG
1 CCGG
58636177 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 96 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
Found at i:58644129 original size:40 final size:40
Alignment explanation
Indices: 58644074--58644236 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
58644064 TGAATGATAC
* * *
58644074 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
58644114 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
58644154 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
58644194 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
58644233 CCGG
1 CCGG
58644237 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
39 9 0.09
40 89 0.86
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:58648105 original size:46 final size:44
Alignment explanation
Indices: 58648006--58648129 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 44
58647996 TGATATGTGT
* * *
58648006 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAGTATGAGA
1 GCTAGTGTAAGACATGTCT-GGACATGCATC-GCCAAAGTACGAGA
* *
58648052 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAG-ACGAGA
1 GCTAGTGTAAGACATGTCT-GGACATGCATCGCCA--AAGTACGAGA
*
58648098 TCTAGTGTAAGACATGTCTGGAACATGCATCG
1 GCTAGTGTAAGACATGTCTGG-ACATGCATCG
58648130 ATCTTGCGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 4 0.06
46 61 0.91
47 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGACATGCATCGCCAAAGTACGAGA
Found at i:58648260 original size:49 final size:49
Alignment explanation
Indices: 58648192--58648322 Score: 178
Period size: 49 Copynumber: 2.7 Consensus size: 49
58648182 TGTGCTGTGT
*
58648192 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GGTAGAT-AAAGAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATAAAAG-C
* * *
58648241 CAGTGTAAGACCTGTCTGGGACAT-GCTATCGGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGC-ATCGACCTCGATAGATAAAAGC
58648290 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC
58648323 TTTAAACTGC
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
48 4 0.05
49 63 0.86
50 6 0.08
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGC
Found at i:58659804 original size:49 final size:49
Alignment explanation
Indices: 58659735--58660143 Score: 631
Period size: 49 Copynumber: 8.4 Consensus size: 49
58659725 TTTACCACAT
*
58659735 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
58659784 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
58659833 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
58659882 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
58659931 ATATACATATACTTTCGCATTCATC-CATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
58659979 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
58660028 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
58660077 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
58660126 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
58660144 GAATCTTGAT
Statistics
Matches: 344, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 46 0.13
49 298 0.87
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:58660058 original size:195 final size:197
Alignment explanation
Indices: 58659715--58660130 Score: 629
Period size: 195 Copynumber: 2.1 Consensus size: 197
58659705 ATTCACATTA
* * * *
58659715 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATACATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
58659780 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATAC
65 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACAC
* * *
58659845 TTTCGCATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCGCATTCACCACA
130 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACA
58659910 TCG
195 TCG
*
58659913 GCCATTAGGCCTTATCACATATACATAT-ACTTTCGCATTCATC-CATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTATCACATATACATATAACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* * * * * *
58659976 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATT
66 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
* * *
58660041 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCACATTCATCACAT
131 TTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACAT
58660106 CG
196 CG
*
58660108 GCCATTAGGCCTCATCACATATA
1 GCCATTAGGCCTTATCACATATA
58660131 TATACATTTT
Statistics
Matches: 198, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
195 160 0.81
196 14 0.07
198 24 0.12
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (197 bp):
GCCATTAGGCCTTATCACATATACATATAACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
TTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACAT
CG
Found at i:58665460 original size:29 final size:29
Alignment explanation
Indices: 58665401--58665504 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
58665391 GTGACGAGAT
* **
58665401 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
58665430 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
* * * *
58665459 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
58665488 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
58665505 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.95
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:58671736 original size:40 final size:40
Alignment explanation
Indices: 58671609--58671738 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
58671599 ATGCTGGAAA
* *
58671609 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
58671649 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
58671689 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
58671729 TTATATCCGG
1 TTATATCCGG
58671739 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:58679665 original size:40 final size:40
Alignment explanation
Indices: 58679538--58679667 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
58679528 ATGCTGGAAA
* *
58679538 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
58679578 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
58679618 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
58679658 TTATATCCGG
1 TTATATCCGG
58679668 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:58684310 original size:29 final size:29
Alignment explanation
Indices: 58684277--58684378 Score: 204
Period size: 29 Copynumber: 3.5 Consensus size: 29
58684267 GTGACGAGAT
58684277 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
58684306 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
58684335 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
58684364 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
58684379 GAGCTCAAAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:58684394 original size:29 final size:29
Alignment explanation
Indices: 58684362--58684438 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
58684352 GCTGGAAATA
*
58684362 TATGGCACTAAGTGTGCGAGCTCAAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
* * * *
58684391 TATGGCACTATGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
58684420 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
58684439 AATCGAGTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:58684395 original size:58 final size:59
Alignment explanation
Indices: 58684273--58684438 Score: 198
Period size: 58 Copynumber: 2.9 Consensus size: 59
58684263 TACGGTGACG
*
58684273 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTGCAA
*
58684330 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCT-CAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTGCAA
* * ** * **
58684387 AGGGTATGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 A-GATATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
58684439 AATCGAGTAT
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
57 10 0.11
58 84 0.88
59 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTGCAA
Found at i:58684476 original size:2 final size:2
Alignment explanation
Indices: 58684471--58684515 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
58684461 GTGCGTACTC
58684471 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58684513 TA T
1 TA T
58684516 CTCCGATCGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:58686203 original size:39 final size:38
Alignment explanation
Indices: 58686069--58686246 Score: 151
Period size: 40 Copynumber: 4.5 Consensus size: 38
58686059 TCGAATGATG
* * * *
58686069 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTACTAAA
* * * *
58686109 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTACTAAA
* *
58686149 TCCGGGCTAAGCCCGAAGGCATGGTGTGAGTTATTAAA
1 TCCGGGCTAAGCCCGAAGGCATGGTGCGAGTTACTAAA
* * *
58686187 TGCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTACTA-AA
*
58686228 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAG-CCCGAAGG
58686247 TATTTGAACG
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
38 22 0.19
39 19 0.17
40 64 0.57
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGCCCGAAGGCATGGTGCGAGTTACTAAA
Found at i:58686205 original size:78 final size:80
Alignment explanation
Indices: 58686069--58686246 Score: 220
Period size: 78 Copynumber: 2.2 Consensus size: 80
58686059 TCGAATGATG
* *
58686069 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
58686134 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * * **
58686148 TTCCGGGCTAAG-CCCGAAGGCATGGTG-TGAGTTATTAAATGCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
58686210 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
58686227 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
58686247 TATTTGAACG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.60
79 22 0.26
80 11 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:58689978 original size:25 final size:25
Alignment explanation
Indices: 58689942--58689992 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
58689932 ATACATAGAG
58689942 AGTCTCCCGTTCAACACTTCGGATC
1 AGTCTCCCGTTCAACACTTCGGATC
*
58689967 AGTCTCCTGTTCAACACTTCGGATC
1 AGTCTCCCGTTCAACACTTCGGATC
58689992 A
1 A
58689993 ATCCTCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (25 bp):
AGTCTCCCGTTCAACACTTCGGATC
Found at i:58691562 original size:29 final size:29
Alignment explanation
Indices: 58691471--58691602 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
58691461 TACTCGATTT
** * *
58691471 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
58691500 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
58691529 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
58691558 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
58691587 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
58691603 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:58699447 original size:40 final size:40
Alignment explanation
Indices: 58699402--58699568 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
58699392 CGGAATGTAA
*
58699402 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
58699442 CCGGATAGAGTGACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58699482 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
58699522 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58699561 CCGGATAT
1 CCGGATAT
58699569 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58713856 original size:2 final size:2
Alignment explanation
Indices: 58713849--58713880 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
58713839 ACCAGAACAG
58713849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58713881 GTCGCGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58716073 original size:78 final size:78
Alignment explanation
Indices: 58715916--58716132 Score: 255
Period size: 78 Copynumber: 2.7 Consensus size: 78
58715906 GAATCACTTA
* * * *
58715916 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCA-AATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGGATTTAACCGGATTTAG-TACTCG--CACAATGCCTTCGGGACTTAGCCCGGAATATA
58715979 GTAACTCGCACAAATG
63 GTAACTCGCACAAATG
58715995 CCTTCGGGATTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGG-CTTAGCCCGGAAT-TAG
1 CCTTCGGGATTTAA-CCGGATTTAGT-ACTCGCACAATGCCTTCGGGACTTAGCCCGGAATATAG
58716058 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
58716073 CCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGAT-TTA-ACCGGATTTAGT-AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
58716133 CATCATTCGA
Statistics
Matches: 122, Mismatches: 8, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
77 4 0.03
78 50 0.41
79 43 0.35
80 25 0.20
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CCTTCGGGATTTAACCGGATTTAGTACTCGCACAATGCCTTCGGGACTTAGCCCGGAATATAGTA
ACTCGCACAAATG
Found at i:58716132 original size:40 final size:40
Alignment explanation
Indices: 58715949--58716132 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
58715939 GCTACTCGTT
*
58715949 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
58715989 CAAATGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
58716029 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
58716067 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
58716108 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58716133 CATCATTCGA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 25 0.20
39 21 0.17
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:58718509 original size:40 final size:40
Alignment explanation
Indices: 58718450--58718629 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
58718440 CATTTGAATG
*
58718450 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58718490 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58718530 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * *
58718570 ATATCCGGGCTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
58718610 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
58718630 AAACTTGGGT
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
38 7 0.05
39 6 0.04
40 121 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:58726475 original size:40 final size:40
Alignment explanation
Indices: 58726416--58726635 Score: 338
Period size: 40 Copynumber: 5.5 Consensus size: 40
58726406 CATTTGAATG
*
58726416 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58726456 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58726496 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
58726536 A-ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
58726575 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58726615 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
58726636 AAACTTGGGT
Statistics
Matches: 167, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 50 0.30
40 116 0.69
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:58726582 original size:79 final size:80
Alignment explanation
Indices: 58726416--58726635 Score: 338
Period size: 79 Copynumber: 2.8 Consensus size: 80
58726406 CATTTGAATG
*
58726416 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
*
58726481 TTTGTGCGAGTTGTT
66 TTTGTGCGAGTTGCT
58726496 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTA-ATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
58726560 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * * * *
58726575 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAAG
58726636 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 85 0.65
80 44 0.34
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:58728668 original size:27 final size:28
Alignment explanation
Indices: 58728611--58728680 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58728601 AAATTTGTAC
**
58728611 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
58728639 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
58728666 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58728681 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:58728689 original size:27 final size:27
Alignment explanation
Indices: 58728611--58728692 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
58728601 AAATTTGTAC
* *
58728611 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
58728639 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
58728666 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
58728693 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:58733437 original size:27 final size:26
Alignment explanation
Indices: 58733389--58733448 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58733379 GCGAGGCTGC
*
58733389 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
58733416 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
58733442 CAGATAT
1 CAGATAT
58733449 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58733452 original size:2 final size:2
Alignment explanation
Indices: 58733445--58733476 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
58733435 ACCAGAACAG
58733445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58733477 GTGGCGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58737852 original size:41 final size:41
Alignment explanation
Indices: 58737807--58737907 Score: 157
Period size: 41 Copynumber: 2.5 Consensus size: 41
58737797 TTTGGTTACT
*
58737807 TGACAGCTTGTGTGAGTAGCACCGTGTAGCTACGTCTTGAC
1 TGACAGCTTGTGTGAGTAGCACCATGTAGCTACGTCTTGAC
** *
58737848 TGACAGCTTGTGTGAACAGCATCATGTAGCTACGTCTTGAC
1 TGACAGCTTGTGTGAGTAGCACCATGTAGCTACGTCTTGAC
*
58737889 TGACAGCTTATGTGAGTAG
1 TGACAGCTTGTGTGAGTAG
58737908 GCCCGTTGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGTAGCACCATGTAGCTACGTCTTGAC
Found at i:58740272 original size:26 final size:26
Alignment explanation
Indices: 58740201--58740382 Score: 253
Period size: 26 Copynumber: 7.1 Consensus size: 26
58740191 GCCTAGCCTC
58740201 TTTCAAT-AACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
58740225 TTTCGGTAAACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
58740250 TTTTAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
** *
58740276 TTTCGGTAAATTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
* * *
58740302 TTTCAACAAACTGGGGCACAAGCCTT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
58740328 TTTCAGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
58740354 TTTCAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
58740380 TTT
1 TTT
58740383 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
24 5 0.04
25 32 0.24
26 99 0.73
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:58740325 original size:52 final size:52
Alignment explanation
Indices: 58740201--58740382 Score: 289
Period size: 52 Copynumber: 3.6 Consensus size: 52
58740191 GCCTAGCCTC
58740201 TTTCAAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
* *
58740250 TTTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAATTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
* * * *
58740302 TTTCAACAAACTGGGGCACAAGCCTTTTTCAGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
58740354 TTTCAATAAACTGGGGCATAAGCCCTTTT
1 TTTCAATAAACTGGGGCATAAGCCCTTTT
58740383 GCACTTCCTC
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
49 6 0.05
50 10 0.08
51 24 0.20
52 79 0.66
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (52 bp):
TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
Found at i:58740457 original size:20 final size:20
Alignment explanation
Indices: 58740432--58740494 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
58740422 TTATGAATTC
*
58740432 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
58740452 ATCATGTGCGTATCATACAT
1 ATCATGTGCATATCATACAT
*
58740472 GTCATGTGCATATCATACCAT
1 ATCATGTGCATATCATA-CAT
58740493 AT
1 AT
58740495 ATTAGGGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 33 0.89
21 4 0.11
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:58748033 original size:26 final size:26
Alignment explanation
Indices: 58747944--58748125 Score: 255
Period size: 26 Copynumber: 7.1 Consensus size: 26
58747934 GCCTAGCCTC
*
58747944 TTTCAAT-AACTGGGGGA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
58747968 TTTCAATAAACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
58747993 TCTCAAT-AACTTGGGGCATAAGCCCT
1 TTTCAATAAAC-TGGGGCATAAGCCCT
**
58748019 TTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
58748045 TTTCAATAAACTGGGACATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
***
58748071 TTTTGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
58748097 TTTCAATAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
58748123 TTT
1 TTT
58748126 GCACTTCCTC
Statistics
Matches: 139, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.07
25 29 0.21
26 97 0.70
27 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:58748219 original size:20 final size:20
Alignment explanation
Indices: 58748175--58748221 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
58748165 TTATGAATTC
*
58748175 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCAAACAT
*
58748195 GTCATGTGCATATCAAATCA-
1 ATCATGTGCATATCAAA-CAT
58748215 ATCATGT
1 ATCATGT
58748222 ATATCATATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCAAACAT
Found at i:58751243 original size:40 final size:39
Alignment explanation
Indices: 58751198--58751405 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
58751188 CGGAATACAA
*
58751198 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58751238 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
58751278 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
58751318 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
58751358 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
58751398 CCGGATAT
1 CCGGATAT
58751406 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58751338 original size:80 final size:80
Alignment explanation
Indices: 58751198--58751404 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
58751188 CGGAATACAA
* * *
58751198 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
58751262 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
58751278 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
58751342 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
58751358 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
58751405 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:58759565 original size:106 final size:108
Alignment explanation
Indices: 58759372--58759566 Score: 281
Period size: 106 Copynumber: 1.8 Consensus size: 108
58759362 AAGGATACCG
*
58759372 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAACCAT
1 TGTAAGACCATGCCAAGGCAT-GCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAACCAT
*
58759437 GTCAAGACATGGCATTGATAAGTTACTATAAGCCAAAGGTCCCA
65 GTCAAGACATGGCAATGATAAGTTACTATAAGCCAAAGGTCCCA
* **
58759481 TGTAAGACCATGCCAAGGCAT-C-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAA-ACCA
*
58759542 TGTCAAGACATGGCAATGGTAAGTT
64 TGTCAAGACATGGCAATGATAAGTT
58759567 TCAAAAGATA
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
104 3 0.04
105 19 0.24
106 34 0.44
107 1 0.01
109 21 0.27
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (108 bp):
TGTAAGACCATGCCAAGGCATGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAACCATG
TCAAGACATGGCAATGATAAGTTACTATAAGCCAAAGGTCCCA
Found at i:58759822 original size:16 final size:16
Alignment explanation
Indices: 58759801--58759831 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58759791 ATAAATTTGA
58759801 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
58759817 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
58759832 AGTGAAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:58762879 original size:55 final size:53
Alignment explanation
Indices: 58762792--58763047 Score: 217
Period size: 55 Copynumber: 4.8 Consensus size: 53
58762782 ATTAGGGTGT
* *
58762792 AAGGATACCATATAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
58762847 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
58762902 AAAGG-TCCCATGTAAGACCATGCCAAGGCAT-GCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
58762954 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* **
58763003 AAGGATACCACT-TAAGACCATGACAAGTTATGGCAA-TGGTAAGTT
1 AAGGATACCA-TGTAAGACCATGCCAAGACATGG-AATTGGTAAGTT
58763048 ACCCATGTAT
Statistics
Matches: 168, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
49 40 0.24
50 1 0.01
51 5 0.03
52 31 0.18
53 11 0.07
54 20 0.12
55 56 0.33
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:58762997 original size:107 final size:110
Alignment explanation
Indices: 58762799--58762998 Score: 300
Period size: 107 Copynumber: 1.8 Consensus size: 110
58762789 TGTAAGGATA
*
58762799 CCATATAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
58762864 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
58762909 CCATGTAAGACCATGCCAAGGCAT-G-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATATAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
58762970 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
58762999 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
106 3 0.04
107 48 0.59
108 7 0.09
109 1 0.01
110 23 0.28
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:58763019 original size:49 final size:49
Alignment explanation
Indices: 58762954--58763047 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
58762944 TTCATAAGGC
*
58762954 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAA
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
**
58763003 AAGGATACCACT-TAAGACCATGACAAGTTATGGCAATGGTAAGTT
1 AAGGATACCA-TGTAAGACCATGACAAGACATGGCAATGGTAAGTT
58763048 ACCCATGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 40 0.98
50 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (49 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
Found at i:58763140 original size:23 final size:24
Alignment explanation
Indices: 58763114--58763158 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
58763104 AAGGTAAGGT
*
58763114 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
58763137 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
58763159 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:58763258 original size:16 final size:16
Alignment explanation
Indices: 58763237--58763267 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58763227 ATAAATATGA
58763237 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
58763253 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
58763268 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:58770594 original size:54 final size:53
Alignment explanation
Indices: 58770513--58770764 Score: 250
Period size: 54 Copynumber: 4.8 Consensus size: 53
58770503 ATTAGGGTTT
* * **
58770513 AAGGATACCATGTAAGACTATGCCAAGACATGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA-GTTTCTAAGGC
* * * *
58770567 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
58770622 AAAGG-TCCCATGTAAGACCATG-CCAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-TAAGGC
*
58770674 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * *
58770723 AAGGATACCA-CTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
58770765 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
48 29 0.17
49 10 0.06
51 5 0.03
52 24 0.14
53 20 0.12
54 54 0.32
55 21 0.13
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:58770708 original size:107 final size:109
Alignment explanation
Indices: 58770520--58770718 Score: 287
Period size: 107 Copynumber: 1.8 Consensus size: 109
58770510 TTTAAGGATA
* *
58770520 CCATGTAAGACTATGCCAAGACATGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CCATGTAAGACCATGCCAAGACATGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
58770585 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** * *
58770629 CCATGTAAGACCATGCC-AGGCATGGCATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGACATGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA
*
58770691 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
58770719 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
106 3 0.04
107 48 0.60
108 13 0.16
109 16 0.20
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGACATGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:58770859 original size:23 final size:24
Alignment explanation
Indices: 58770833--58770880 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
58770823 AAGGTAAGGT
*
58770833 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
58770856 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
58770880 A
1 A
58770881 GAGCAAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:58775550 original size:48 final size:46
Alignment explanation
Indices: 58775491--58775605 Score: 140
Period size: 48 Copynumber: 2.5 Consensus size: 46
58775481 TGTGCTAACC
* *
58775491 GGATACACCACGATTAAACATACTGATACATGTAATGTGGTGCTAAGT
1 GGATATACCACGGTTAAACATACTGATACAT-TAATGTGGTGC-AAGT
* * * * *
58775539 GGATATGCCACGGTTACATATATTGATTCATTAATGTGGTGCAAGT
1 GGATATACCACGGTTAAACATACTGATACATTAATGTGGTGCAAGT
*
58775585 GTATATACCACGGTTAAACAT
1 GGATATACCACGGTTAAACAT
58775606 GTAACGTAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 21 0.38
47 11 0.20
48 24 0.43
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (46 bp):
GGATATACCACGGTTAAACATACTGATACATTAATGTGGTGCAAGT
Found at i:58781266 original size:39 final size:39
Alignment explanation
Indices: 58781212--58781404 Score: 287
Period size: 39 Copynumber: 4.9 Consensus size: 39
58781202 AAGACACTGG
*
58781212 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
58781251 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
* *
58781290 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGTTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
* * * *
58781329 AAATGTATCCGAGCTAAAGTCCCGTAGGCTTCGTGTTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
* * * *
58781368 AAATGTATCCGAGCTAAAGTCCTGTAGGCTTTGTGCT
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
58781405 AGTAATATAA
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGC
Found at i:58783795 original size:29 final size:29
Alignment explanation
Indices: 58783728--58783823 Score: 140
Period size: 29 Copynumber: 3.3 Consensus size: 29
58783718 AAGTCTACAT
* * *
58783728 ACATACATATCGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58783756 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58783785 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
58783814 ACATTCATAT
1 ACATTCATAT
58783824 TCATGCTTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 20 0.33
29 40 0.67
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:58788169 original size:29 final size:29
Alignment explanation
Indices: 58788080--58788203 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
58788070 CTACATACAT
* *
58788080 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * **
58788108 TCATTCATATAGCCCATTA-GTACAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58788136 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58788165 ACATTCATATGGCCCATTAAGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
58788194 ACATTCATAT
1 ACATTCATAT
58788204 TCATGCTTTC
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 2 0.02
28 35 0.43
29 44 0.54
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:58789709 original size:15 final size:15
Alignment explanation
Indices: 58789685--58789724 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
58789675 TGTAAATGCA
58789685 ATTTCCTTATCATGG
1 ATTTCCTTATCATGG
* *
58789700 ATTTCTTTATCTTGG
1 ATTTCCTTATCATGG
58789715 ATTTCCTTAT
1 ATTTCCTTAT
58789725 TCTGGGCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.55
Consensus pattern (15 bp):
ATTTCCTTATCATGG
Found at i:58789765 original size:23 final size:23
Alignment explanation
Indices: 58789739--58789782 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
58789729 GGCTTCTCCG
*
58789739 TTTC-AGATTTTTCTATCTTGTGT
1 TTTCTAGATATTT-TATCTTGTGT
*
58789762 TTTCTGGATATTTTATCTTGT
1 TTTCTAGATATTTTATCTTGT
58789783 AACTTGTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.14, C:0.11, G:0.14, T:0.61
Consensus pattern (23 bp):
TTTCTAGATATTTTATCTTGTGT
Found at i:58792139 original size:26 final size:26
Alignment explanation
Indices: 58792110--58792169 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
58792100 TTCCTTTGAA
* * *
58792110 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
58792136 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
58792164 TCATTC
1 TCATTC
58792170 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:58792155 original size:28 final size:28
Alignment explanation
Indices: 58792124--58792186 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
58792114 TCGATATTTT
58792124 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
58792152 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
58792180 GTACACT
1 GCACACT
58792187 CAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:58795692 original size:48 final size:47
Alignment explanation
Indices: 58795616--58795742 Score: 157
Period size: 48 Copynumber: 2.7 Consensus size: 47
58795606 GAAAAAAACG
* *
58795616 TGGTGCTAAGTGGATATACCA-TGATTACACATATTGATACATGTAACA
1 TGGTGCTAAGTGGATATACCACAG-TTACACATATAGATACAT-TAACA
* * * *
58795664 TGGTGCTAAGTGGATATGCCACAGTTACATATATAGATTCATTAACG
1 TGGTGCTAAGTGGATATACCACAGTTACACATATAGATACATTAACA
* *
58795711 TGGTGCTAAGTGGATATACCACGGTTAAACAT
1 TGGTGCTAAGTGGATATACCACAGTTACACAT
58795743 GTAACATGGT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
47 32 0.47
48 35 0.51
49 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (47 bp):
TGGTGCTAAGTGGATATACCACAGTTACACATATAGATACATTAACA
Found at i:58795762 original size:38 final size:38
Alignment explanation
Indices: 58795706--58795782 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
58795696 ATAGATTCAT
* *
58795706 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGCTAAACATG
* *
58795744 TAACATGGTGCTAAGTGGATATGCCACGGCTATACATG
1 TAACATGGTGCTAAGTGGATATACCACGGCTAAACATG
58795782 T
1 T
58795783 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGCTAAACATG
Found at i:58800543 original size:28 final size:28
Alignment explanation
Indices: 58800512--58800580 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
58800502 GCATAGATCA
58800512 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58800540 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58800568 CGATA-TACCCCTA
1 CGAAATTACCCCTA
58800581 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58807005 original size:26 final size:27
Alignment explanation
Indices: 58806942--58807009 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
58806932 AGCGTAGATC
58806942 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
58806969 ACGAAATTACCCCTAAAGAGC-AAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
*
58806995 ACCGATA-TACCCCTA
1 A-CGAAATTACCCCTA
58807010 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 14 0.36
27 25 0.64
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.19
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:58812693 original size:27 final size:27
Alignment explanation
Indices: 58812639--58812749 Score: 113
Period size: 27 Copynumber: 4.1 Consensus size: 27
58812629 AGCATTGCTG
* * *
58812639 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAATAGATAATTGTGGCAGAGCCA
58812665 CCAGAATAGATAATTGTGGC-GAAGCCA
1 CCAGAATAGATAATTGTGGCAG-AGCCA
*
58812692 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAATAGATAAT-TGTGGCAGAGCCA
* *
58812719 CCAG-ATCAGATAAATGTGGCATAGCCA
1 CCAGAAT-AGATAATTGTGGCAGAGCCA
58812746 CCAG
1 CCAG
58812750 GACACTTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 16 0.22
27 54 0.75
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAATAGATAATTGTGGCAGAGCCA
Found at i:58812721 original size:54 final size:53
Alignment explanation
Indices: 58812639--58812749 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 53
58812629 AGCATTGCTG
* *
58812639 CCAGAACAGATAATGTGACAGAGTCACCAGAAT-AGATAATTGTGGCGA-AGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAG-ATCAGATAAATGTGGC-ATAGCCA
*
58812692 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAAATGTGGCATAGCCA
58812746 CCAG
1 CCAG
58812750 GACACTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
53 15 0.29
54 37 0.71
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAAATGTGGCATAGCCA
Found at i:58814192 original size:24 final size:24
Alignment explanation
Indices: 58814154--58814229 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
58814144 CCAACACCGT
* *
58814154 TCTCCCTAATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
58814178 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
58814202 TAT-CCTTATC-GACTCCTAAATCC
1 TCTCCCTTATCAG-CTCCTAAATCC
58814225 TCTCC
1 TCTCC
58814230 TGACAGACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
22 1 0.02
23 20 0.43
24 25 0.54
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:58814217 original size:23 final size:23
Alignment explanation
Indices: 58814165--58814230 Score: 98
Period size: 23 Copynumber: 2.8 Consensus size: 23
58814155 CTCCCTAATT
58814165 AGCTCCTAAATCCTCTCCCTTATC
1 AGCTCCTAAATCCTCT-CCTTATC
*
58814189 AGCTCCTAAATCCTATCCTTATC
1 AGCTCCTAAATCCTCTCCTTATC
58814212 -GACTCCTAAATCCTCTCCT
1 AG-CTCCTAAATCCTCTCCT
58814231 GACAGACTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
22 1 0.03
23 23 0.59
24 15 0.38
ACGTcount: A:0.23, C:0.39, G:0.05, T:0.33
Consensus pattern (23 bp):
AGCTCCTAAATCCTCTCCTTATC
Found at i:58814238 original size:23 final size:24
Alignment explanation
Indices: 58814167--58814238 Score: 96
Period size: 23 Copynumber: 3.1 Consensus size: 24
58814157 CCCTAATTAG
58814167 CTCCTAAATCCTCTCCCTTATCAG-
1 CTCCTAAATCCTCT-CCTTATCAGA
*
58814191 CTCCTAAATCCTATCCTTATC-GA
1 CTCCTAAATCCTCTCCTTATCAGA
*
58814214 CTCCTAAATCCTCTCCTGA-CAGA
1 CTCCTAAATCCTCTCCTTATCAGA
58814237 CT
1 CT
58814239 TTCACTTCAG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 2 0.05
23 28 0.65
24 13 0.30
ACGTcount: A:0.24, C:0.39, G:0.06, T:0.32
Consensus pattern (24 bp):
CTCCTAAATCCTCTCCTTATCAGA
Found at i:58815988 original size:17 final size:19
Alignment explanation
Indices: 58815966--58816003 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
58815956 AAGGGAGAAT
58815966 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
58815983 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
58816003 A
1 A
58816004 TGTGTGATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:58817338 original size:29 final size:29
Alignment explanation
Indices: 58817306--58817408 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
58817296 GTGACGAGAT
* *
58817306 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
58817335 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
58817364 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
58817393 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
58817409 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:58823714 original size:17 final size:19
Alignment explanation
Indices: 58823692--58823729 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
58823682 AAGGGAGAAT
58823692 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
58823709 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
58823729 A
1 A
58823730 TGTGTGATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:58825065 original size:29 final size:29
Alignment explanation
Indices: 58825033--58825135 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
58825023 GTGACGAGAT
* *
58825033 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
58825062 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
58825091 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
58825120 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
58825136 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:58828572 original size:27 final size:28
Alignment explanation
Indices: 58828542--58828611 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58828532 ATAATAAGTC
*
58828542 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
58828569 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
58828597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58828612 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58836480 original size:27 final size:28
Alignment explanation
Indices: 58836450--58836519 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
58836440 ATAATAAGTC
*
58836450 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
58836477 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
58836505 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58836520 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58837865 original size:26 final size:26
Alignment explanation
Indices: 58837815--58837966 Score: 179
Period size: 26 Copynumber: 5.8 Consensus size: 26
58837805 TTTCTTTNGT
58837815 AAACGTAATTCTGTAAATCGAGGGTA
1 AAACGTAATTCTGTAAATCGAGGGTA
*
58837841 AAACGATAATTATGTAAATCG-GGGTA
1 AAACG-TAATTCTGTAAATCGAGGGTA
* *
58837867 AAATGGTAATTATGTAAAT--AGGGTA
1 AAA-CGTAATTCTGTAAATCGAGGGTA
*
58837892 AAACGGTAATT-TATAAATCGAGGGTA
1 AAAC-GTAATTCTGTAAATCGAGGGTA
*
58837918 AAATAGTAATTCTGTAAA-CTGAGGGTA
1 AAA-CGTAATTCTGTAAATC-GAGGGTA
58837945 AAACGTAATTCTGTAAATCGAG
1 AAACGTAATTCTGTAAATCGAG
58837967 AGTACTTTGG
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
24 6 0.06
25 14 0.13
26 58 0.53
27 31 0.28
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (26 bp):
AAACGTAATTCTGTAAATCGAGGGTA
Found at i:58837953 original size:77 final size:77
Alignment explanation
Indices: 58837815--58837962 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
58837805 TTTCTTTNGT
* * *
58837815 AAACGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGTAAAATGGTAATTAT
1 AAACGTAATTCTATAAATCGAGGGTAAAAAGATAATTATGTAAATCGGGGTAAAATCGTAATTAT
58837880 GTAAATAGGGTA
66 GTAAATAGGGTA
*
58837892 AAACGGTAATT-TATAAATCGAGGGTAAAATAG-TAATTCTGTAAA-CTGAGGGTAAAA-CGTAA
1 AAAC-GTAATTCTATAAATCGAGGGTAAAA-AGATAATTATGTAAATC-G-GGGTAAAATCGTAA
*
58837953 TTCTGTAAAT
62 TTATGTAAAT
58837963 CGAGAGTACT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
76 1 0.02
77 46 0.74
78 15 0.24
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (77 bp):
AAACGTAATTCTATAAATCGAGGGTAAAAAGATAATTATGTAAATCGGGGTAAAATCGTAATTAT
GTAAATAGGGTA
Found at i:58837981 original size:53 final size:51
Alignment explanation
Indices: 58837819--58837966 Score: 201
Period size: 51 Copynumber: 2.8 Consensus size: 51
58837809 TTTNGTAAAC
58837819 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAAT-GAGGGTAAAACG-TAATT-TGTAAATCGAGGGTAAAATG
* * *
58837872 GTAATTATGTAAAT-AGGGTAAAACGGTAATTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATGAGGGTAAAAC-GTAATTTGTAAATCGAGGGTAAAATG
58837923 GTAATTCTGTAAACTGAGGGTAAAACGTAATTCTGTAAATCGAG
1 GTAATTCTGTAAA-TGAGGGTAAAACGTAATT-TGTAAATCGAG
58837967 AGTACTTTGG
Statistics
Matches: 85, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
50 8 0.09
51 36 0.42
52 8 0.09
53 33 0.39
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (51 bp):
GTAATTCTGTAAATGAGGGTAAAACGTAATTTGTAAATCGAGGGTAAAATG
Found at i:58841094 original size:22 final size:22
Alignment explanation
Indices: 58841066--58841134 Score: 104
Period size: 22 Copynumber: 3.1 Consensus size: 22
58841056 CCTAGCCTCT
58841066 TTTAATAACTGGGCAAAAGCCC
1 TTTAATAACTGGGCAAAAGCCC
*
58841088 TTTAATAACTGGGC-ATAGCCC
1 TTTAATAACTGGGCAAAAGCCC
*
58841109 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACT-GGGCAAAAGCCC
58841132 TTT
1 TTT
58841135 GGCATAAGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 16 0.38
22 18 0.43
23 8 0.19
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (22 bp):
TTTAATAACTGGGCAAAAGCCC
Found at i:58841140 original size:14 final size:14
Alignment explanation
Indices: 58841121--58841149 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
58841111 TAATAACTGG
58841121 GGCATAAGCCCTTT
1 GGCATAAGCCCTTT
58841135 GGCATAAGCCCTTT
1 GGCATAAGCCCTTT
58841149 G
1 G
58841150 AACTGGGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (14 bp):
GGCATAAGCCCTTT
Found at i:58841196 original size:22 final size:22
Alignment explanation
Indices: 58841135--58841236 Score: 138
Period size: 22 Copynumber: 4.6 Consensus size: 22
58841125 TAAGCCCTTT
*
58841135 GGCATAAGCCCTTT--GAACTG
1 GGCATAAGCCCTTTAATAACTG
*
58841155 GGCATAAGCCCTTTTGATAA-TGG
1 GGCATAAGCCC-TTTAATAACT-G
58841178 GGCATAAGCCCTTTAATAACTG
1 GGCATAAGCCCTTTAATAACTG
58841200 GGCATAAGCCCTTTAATAACTGG
1 GGCATAAGCCCTTTAATAACT-G
58841223 GGCATAAGCCCTTT
1 GGCATAAGCCCTTT
58841237 TGCACTTCCT
Statistics
Matches: 74, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
20 11 0.15
21 3 0.04
22 30 0.41
23 30 0.41
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (22 bp):
GGCATAAGCCCTTTAATAACTG
Found at i:58841208 original size:45 final size:43
Alignment explanation
Indices: 58841135--58841236 Score: 152
Period size: 45 Copynumber: 2.3 Consensus size: 43
58841125 TAAGCCCTTT
*
58841135 GGCATAAGCCCTTTGAACTGGGCATAAGCCCTTTTGATAA-TGG
1 GGCATAAGCCCTTTGAACTGGGCATAAGCCC-TTTAATAACTGG
*
58841178 GGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTTAATAACTGG
1 GGCATAAGCCCTTT--GAACTGGGCATAAGCCCTTTAATAACTGG
58841223 GGCATAAGCCCTTT
1 GGCATAAGCCCTTT
58841237 TGCACTTCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
43 14 0.26
44 7 0.13
45 33 0.61
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (43 bp):
GGCATAAGCCCTTTGAACTGGGCATAAGCCCTTTAATAACTGG
Found at i:58841307 original size:9 final size:9
Alignment explanation
Indices: 58841293--58841349 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58841283 ATCTCATGTG
58841293 CATATCATA
1 CATATCATA
*
58841302 CATATCATGTG
1 CATATCA--TA
58841313 CATATCATA
1 CATATCATA
* *
58841322 CATGTCATGTG
1 CATATCA--TA
58841333 CATATCATA
1 CATATCATA
58841342 CATATCAT
1 CATATCAT
58841350 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58841309 original size:20 final size:20
Alignment explanation
Indices: 58841281--58841351 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
58841271 GCATTTATGA
*
58841281 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58841301 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58841321 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58841341 ACATATCATGT
1 ACATATCATGT
58841352 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:58841316 original size:11 final size:11
Alignment explanation
Indices: 58841286--58841340 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
58841276 TATGAACATC
58841286 TCATGTGCATA
1 TCATGTGCATA
*
58841297 TCA--TACATA
1 TCATGTGCATA
58841306 TCATGTGCATA
1 TCATGTGCATA
* *
58841317 TCA--TACATG
1 TCATGTGCATA
58841326 TCATGTGCATA
1 TCATGTGCATA
58841337 TCAT
1 TCAT
58841341 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:58842652 original size:27 final size:27
Alignment explanation
Indices: 58842632--58842891 Score: 341
Period size: 27 Copynumber: 9.7 Consensus size: 27
58842622 AGGGTATTTT
*
58842632 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58842659 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
58842686 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58842713 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
58842740 -GTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
58842766 -GTAATTATGTAAATCGAGGGGGTAAAAT
1 AGTAATTCTGTAAATCGA--GGGTAAAAC
* *
58842794 GGTAATTATGTAAAT--AGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
58842819 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
58842846 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
58842873 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
58842892 AGTACTTTGG
Statistics
Matches: 208, Mismatches: 18, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
25 21 0.10
26 43 0.21
27 121 0.58
28 9 0.04
29 14 0.07
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:58842828 original size:133 final size:133
Alignment explanation
Indices: 58842633--58842891 Score: 407
Period size: 133 Copynumber: 1.9 Consensus size: 133
58842623 GGGTATTTTA
* *
58842633 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAAT-AAGGGTAAAACAGTAATTCTATA
*
58842698 AATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGT
65 AATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
58842761 AAAAC
129 AAAAC
** *
58842766 GTAATTATGTAAATCGAGGGGGTAAAATGGTAATTATGTAAAT-AGGGTAAAACGGTAATTCTAT
1 GTAATTATGTAAATCGA--GGGTAAAACAGTAATTATGTAAATAAGGGTAAAACAGTAATTCTAT
58842830 AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
64 AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
58842892 AGTACTTTGG
Statistics
Matches: 116, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
133 76 0.66
134 19 0.16
135 21 0.18
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (133 bp):
GTAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
AAC
Found at i:58846041 original size:24 final size:24
Alignment explanation
Indices: 58845990--58846200 Score: 317
Period size: 23 Copynumber: 9.0 Consensus size: 24
58845980 GCTTTATCAT
*
58845990 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
58846015 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
58846039 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
58846062 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
58846085 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58846109 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58846133 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
58846155 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
58846178 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58846201 GCACTTCCTC
Statistics
Matches: 175, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
22 9 0.05
23 92 0.53
24 62 0.35
25 12 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58846105 original size:70 final size:69
Alignment explanation
Indices: 58846011--58846199 Score: 317
Period size: 70 Copynumber: 2.7 Consensus size: 69
58846001 CCTAGCCTCT
* *
58846011 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATA
58846076 AGCCC
65 AGCCC
* *
58846081 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGCATA
58846146 AGCCC
65 AGCCC
58846151 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
58846200 TGCACTTCCT
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
68 3 0.03
69 22 0.19
70 79 0.70
71 9 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (69 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAA
GCCC
Found at i:58846270 original size:9 final size:9
Alignment explanation
Indices: 58846256--58846312 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58846246 ATCTCATGTG
58846256 CATATCATA
1 CATATCATA
*
58846265 CATATCATGTG
1 CATATCA--TA
58846276 CATATCATA
1 CATATCATA
* *
58846285 CATGTCATGTG
1 CATATCA--TA
58846296 CATATCATA
1 CATATCATA
58846305 CATATCAT
1 CATATCAT
58846313 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58846272 original size:20 final size:20
Alignment explanation
Indices: 58846244--58846314 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
58846234 GCATTTATGA
*
58846244 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58846264 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58846284 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58846304 ACATATCATGT
1 ACATATCATGT
58846315 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:58846279 original size:11 final size:11
Alignment explanation
Indices: 58846249--58846303 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
58846239 TATGAACATC
58846249 TCATGTGCATA
1 TCATGTGCATA
*
58846260 TCA--TACATA
1 TCATGTGCATA
58846269 TCATGTGCATA
1 TCATGTGCATA
* *
58846280 TCA--TACATG
1 TCATGTGCATA
58846289 TCATGTGCATA
1 TCATGTGCATA
58846300 TCAT
1 TCAT
58846304 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:58847624 original size:27 final size:27
Alignment explanation
Indices: 58847604--58847864 Score: 332
Period size: 27 Copynumber: 9.7 Consensus size: 27
58847594 AGGGTATTTT
*
58847604 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58847631 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
58847658 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58847685 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
58847712 -GTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
58847738 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
58847765 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
58847792 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
58847819 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
58847846 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
58847865 AGTACTTTGG
Statistics
Matches: 206, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 28 0.14
27 175 0.85
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:58847750 original size:134 final size:135
Alignment explanation
Indices: 58847606--58847864 Score: 414
Period size: 134 Copynumber: 1.9 Consensus size: 135
58847596 GGTATTTTAG
* *
58847606 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
58847671 ATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTA
66 ATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
58847734 AAACGA
130 AAACGA
* ** * * *
58847740 TAATTATGTAAATCGGGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
58847805 ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
66 ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
58847865 AGTACTTTGG
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
134 95 0.83
135 19 0.17
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (135 bp):
TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
AACGA
Found at i:58857882 original size:28 final size:28
Alignment explanation
Indices: 58857848--58857981 Score: 139
Period size: 28 Copynumber: 4.7 Consensus size: 28
58857838 ACATACATGC
58857848 ATATGGCCC-TCTAGGCCCAATCTCATTT
1 ATATGGCCCAT-TAGGCCCAATCTCATTT
*
58857876 AGATGGCCCATCT-GGCCCAAT-TCATGTT
1 ATATGGCCCAT-TAGGCCCAATCTCAT-TT
* * * *
58857904 CATATGGCCCATAAAGCCCAATTCACATTC
1 -ATATGGCCCATTAGGCCCAA-TCTCATTT
58857934 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATTAGGCCCAATCTCATTT
**
58857962 ATATGGCCCATCCGGCCCAA
1 ATATGGCCCATTAGGCCCAA
58857982 ATCACATTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
27 4 0.05
28 42 0.48
29 37 0.42
30 2 0.02
31 3 0.03
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCATTT
Found at i:58857914 original size:29 final size:29
Alignment explanation
Indices: 58857847--58857981 Score: 138
Period size: 29 Copynumber: 4.7 Consensus size: 29
58857837 CACATACATG
58857847 CATATGGCCC-TCTAGGCCCAATCTCATTT
1 CATATGGCCCATCT-GGCCCAATCTCATTT
*
58857876 -AGATGGCCCATCTGGCCCAAT-TCATGTT
1 CATATGGCCCATCTGGCCCAATCTCAT-TT
*** *
58857904 CATATGGCCCATAAAGCCCAAT-TCACATT
1 CATATGGCCCATCTGGCCCAATCTCA-TTT
58857933 CATATGGCCCAT-TAGGCCCAATCTCATTT
1 CATATGGCCCATCT-GGCCCAATCTCATTT
*
58857962 -ATATGGCCCATCCGGCCCAA
1 CATATGGCCCATCTGGCCCAA
58857982 ATCACATTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
27 4 0.04
28 36 0.40
29 46 0.52
30 3 0.03
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATCTGGCCCAATCTCATTT
Found at i:58858230 original size:16 final size:16
Alignment explanation
Indices: 58858206--58858240 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
58858196 TAGCCAAACC
*
58858206 TTCGGCTTTTCAGAAT
1 TTCGACTTTTCAGAAT
*
58858222 TTCGACTTTTCAGCAT
1 TTCGACTTTTCAGAAT
58858238 TTC
1 TTC
58858241 AGCTTTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (16 bp):
TTCGACTTTTCAGAAT
Found at i:58860783 original size:43 final size:44
Alignment explanation
Indices: 58860675--58860813 Score: 103
Period size: 43 Copynumber: 3.3 Consensus size: 44
58860665 CTTACATGCT
* * * *
58860675 ATCACATATCGATGGC-ACTGTCCCAAATAGGGTCTT--ACATGA
1 ATCACATATCGATGCCAAC-ATCCCAAACATGGTCTTACACATGA
* * **
58860717 ATCAAATA-CGATGCTAATTTCCCAAACATGGTCTTACACAT-A
1 ATCACATATCGATGCCAACATCCCAAACATGGTCTTACACATGA
** *
58860759 ATCACATATCGATGCCAACATCCCAGGCGTGGTCTT--ACATGA
1 ATCACATATCGATGCCAACATCCCAAACATGGTCTTACACATGA
*
58860801 GAACACATATCGA
1 -ATCACATATCGA
58860814 AAACCCTATG
Statistics
Matches: 76, Mismatches: 15, Indels: 11
0.75 0.15 0.11
Matches are distributed among these distances:
41 23 0.30
42 17 0.22
43 36 0.47
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
ATCACATATCGATGCCAACATCCCAAACATGGTCTTACACATGA
Found at i:58864576 original size:34 final size:34
Alignment explanation
Indices: 58864495--58864581 Score: 86
Period size: 34 Copynumber: 2.6 Consensus size: 34
58864485 TGTATTGAGT
* **
58864495 TGGGCTGAGGCCCACACTGATACTGCTGTTGTAA
1 TGGGCTAAGGCCCACACTGATACTGCTACTGTAA
* * *
58864529 TGGGCTAAAGCCCACACTGGTATTGCTACTG-ATA
1 TGGGCTAAGGCCCACACTGATACTGCTACTGTA-A
* *
58864563 TGGGCTTAGGCCCAGACTG
1 TGGGCTAAGGCCCACACTG
58864582 TACGACACTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
33 1 0.02
34 42 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATACTGCTACTGTAA
Found at i:58870992 original size:33 final size:33
Alignment explanation
Indices: 58870950--58871020 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
58870940 TAAGGATAAA
58870950 TAATTGTCTATGCACAAGATCACATATTCATTT
1 TAATTGTCTATGCACAAGATCACATATTCATTT
58870983 TAATTGTCTATGCACAAGATCACATATTCATTT
1 TAATTGTCTATGCACAAGATCACATATTCATTT
58871016 TAATT
1 TAATT
58871021 TACACTCTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (33 bp):
TAATTGTCTATGCACAAGATCACATATTCATTT
Found at i:58874101 original size:40 final size:40
Alignment explanation
Indices: 58874052--58874192 Score: 178
Period size: 40 Copynumber: 3.5 Consensus size: 40
58874042 CGGATGTAAC
58874052 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
58874092 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
58874132 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
58874172 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
58874193 ATCTTAGTCC
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
39 5 0.06
40 82 0.91
41 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:58880730 original size:46 final size:46
Alignment explanation
Indices: 58880583--58880716 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
58880573 TGTAACCCGC
* * *
58880583 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
58880629 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
58880675 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
58880717 AACCATCCTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:58894365 original size:22 final size:23
Alignment explanation
Indices: 58894337--58894379 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
58894327 TATCCCCACA
*
58894337 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGTGGATGGATGGAG
58894359 TGGAGTGTAGTGGATGGATGG
1 TGGAGTGTAGTGGATGGATGG
58894380 GTAGGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.19, C:0.02, G:0.53, T:0.26
Consensus pattern (23 bp):
TGGAGTGTAGTGGATGGATGGAG
Found at i:58896486 original size:40 final size:39
Alignment explanation
Indices: 58896321--58896504 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
58896311 AAATTGAATG
* * *
58896321 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
58896361 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
58896401 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
58896441 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
58896480 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
58896505 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:58896529 original size:80 final size:81
Alignment explanation
Indices: 58896361--58896549 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
58896351 GCTGGAAATT
* * * *
58896361 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
58896426 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
58896442 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
58896505 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
58896521 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
58896550 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:58904606 original size:40 final size:39
Alignment explanation
Indices: 58904441--58904624 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
58904431 AAATTGAATG
* * *
58904441 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
58904481 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
58904521 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
58904561 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
58904600 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
58904625 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:58904649 original size:80 final size:81
Alignment explanation
Indices: 58904481--58904669 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
58904471 GCTGGAAATT
* * * *
58904481 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
58904546 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
58904562 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
58904625 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
58904641 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
58904670 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:58910449 original size:40 final size:40
Alignment explanation
Indices: 58910404--58910533 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
58910394 CGGAATACAA
58910404 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
58910444 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
58910484 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
58910524 CCGGATATAA
1 CCGGATATAA
58910534 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:58912587 original size:18 final size:18
Alignment explanation
Indices: 58912564--58912599 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
58912554 CCCTATCAAC
58912564 CGCGGAGTCAGTTTGCCT
1 CGCGGAGTCAGTTTGCCT
58912582 CGCGGAGTCAGTTTGCCT
1 CGCGGAGTCAGTTTGCCT
58912600 TTCTTGTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.28, G:0.33, T:0.28
Consensus pattern (18 bp):
CGCGGAGTCAGTTTGCCT
Found at i:58923043 original size:210 final size:210
Alignment explanation
Indices: 58922746--58923168 Score: 819
Period size: 210 Copynumber: 2.0 Consensus size: 210
58922736 TCTACTACTA
*
58922746 GCAGAATTTGTTTATAATAATAGTTTAAAATCTAGCATTCAGATTGCCCCGTATGAAGCTTTGTA
1 GCAGAATTTGTTTATAATAATAGTTTAAAATCTAGCATTCAGATCGCCCCGTATGAAGCTTTGTA
58922811 TGGTCGAAGGTGTCAATCACCAGTATGTTGGACAGAATTGAATGAGAAAAAGATAGTTGGAAAAG
66 TGGTCGAAGGTGTCAATCACCAGTATGTTGGACAGAATTGAATGAGAAAAAGATAGTTGGAAAAG
*
58922876 AATTAATTCAAGAGATAGAAGAAACAGTGAAAAAGATTAGAGATAGGTTGAAAAAAGCTTTTGAC
131 AATTAATTCAAGAGACAGAAGAAACAGTGAAAAAGATTAGAGATAGGTTGAAAAAAGCTTTTGAC
58922941 AGACAAAAATCTTAT
196 AGACAAAAATCTTAT
58922956 GCAGAATTTGTTTATAATAATAGTTTAAAATCTAGCATTCAGATCGCCCCGTATGAAGCTTTGTA
1 GCAGAATTTGTTTATAATAATAGTTTAAAATCTAGCATTCAGATCGCCCCGTATGAAGCTTTGTA
58923021 TGGTCGAAGGTGTCAATCACCAGTATGTTGGACAGAATTGAATGAGAAAAAGATAGTTGGAAAAG
66 TGGTCGAAGGTGTCAATCACCAGTATGTTGGACAGAATTGAATGAGAAAAAGATAGTTGGAAAAG
*
58923086 AATTAATTCAAGAGACAGAAGAAACAGTGAAAAAGATTAGAGATAGGTTGAAAACAGCTTTTGAC
131 AATTAATTCAAGAGACAGAAGAAACAGTGAAAAAGATTAGAGATAGGTTGAAAAAAGCTTTTGAC
58923151 AGACAAAAATCTTAT
196 AGACAAAAATCTTAT
58923166 GCA
1 GCA
58923169 AATCTGAAAT
Statistics
Matches: 210, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
210 210 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (210 bp):
GCAGAATTTGTTTATAATAATAGTTTAAAATCTAGCATTCAGATCGCCCCGTATGAAGCTTTGTA
TGGTCGAAGGTGTCAATCACCAGTATGTTGGACAGAATTGAATGAGAAAAAGATAGTTGGAAAAG
AATTAATTCAAGAGACAGAAGAAACAGTGAAAAAGATTAGAGATAGGTTGAAAAAAGCTTTTGAC
AGACAAAAATCTTAT
Found at i:58923990 original size:15 final size:16
Alignment explanation
Indices: 58923970--58924007 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
58923960 TAATTAATGA
58923970 TATATAAATAT-AATT
1 TATATAAATATGAATT
58923985 TATAT-AATATGAATT
1 TATATAAATATGAATT
58924000 TATGATAA
1 TAT-ATAA
58924008 TTAAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.25
15 12 0.60
16 2 0.10
17 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (16 bp):
TATATAAATATGAATT
Found at i:58924016 original size:29 final size:28
Alignment explanation
Indices: 58923950--58924017 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
58923940 TTTATTTGTT
58923950 TTAAATTATATAATTAATGATATATAAA
1 TTAAATTATATAATTAATGATATATAAA
* *
58923978 TATAATTTATATAA-T-ATGAATTTATGATAA
1 T-TAAATTATATAATTAATG-ATATAT-A-AA
58924008 TTAAATTATA
1 TTAAATTATA
58924018 ATGATATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
27 3 0.09
28 7 0.21
29 20 0.61
30 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
TTAAATTATATAATTAATGATATATAAA
Found at i:58925706 original size:24 final size:24
Alignment explanation
Indices: 58925674--58925722 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
58925664 TTGAAAAGTA
58925674 TGAGAAAGAATGTATAAGTTAAAT
1 TGAGAAAGAATGTATAAGTTAAAT
58925698 TGAGAAAGAATGTATAAGTTAAAT
1 TGAGAAAGAATGTATAAGTTAAAT
58925722 T
1 T
58925723 ATGAATTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (24 bp):
TGAGAAAGAATGTATAAGTTAAAT
Found at i:58928290 original size:28 final size:28
Alignment explanation
Indices: 58928225--58928325 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
58928215 ATAGTGAATC
*
58928225 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
58928254 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58928282 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
58928312 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58928326 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58933301 original size:40 final size:40
Alignment explanation
Indices: 58933256--58933421 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
58933246 CGGAATATAA
58933256 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58933296 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
58933336 CCGGATAT-AGCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
58933375 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58933414 CCGGATAT
1 CCGGATAT
58933422 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58933378 original size:39 final size:38
Alignment explanation
Indices: 58933272--58933383 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
58933262 ATAATCACGT
* * *
58933272 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TAGAACTA
* *
58933312 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGAACTA
*
58933351 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
58933384 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAGAACTA
Found at i:58933405 original size:79 final size:78
Alignment explanation
Indices: 58933272--58933421 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
58933262 ATAATCACGT
*
58933272 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
58933337 CGGATATAGCACTA
65 CGGATATAGCACTA
* * ** * *
58933351 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
58933414 CCGGATAT
64 CCGGATAT
58933422 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCACTA
Found at i:58934270 original size:17 final size:19
Alignment explanation
Indices: 58934247--58934292 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
58934237 AAGAAGCATG
58934247 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
58934265 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
58934283 AATCATGCTC
1 AATCATGCTC
58934293 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:58938872 original size:26 final size:27
Alignment explanation
Indices: 58938708--58938866 Score: 227
Period size: 27 Copynumber: 6.0 Consensus size: 27
58938698 TTTGGTTTAC
58938708 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
58938734 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
58938761 AAAATTACCAAATTACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
58938788 AAAATTATCAAAATACCCCTAGTTTG-
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
58938814 AAATTTATCAAAATACCCCTAG-TTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
58938840 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
58938867 GAATTAACTG
Statistics
Matches: 120, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
25 3 0.03
26 54 0.45
27 62 0.52
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:58938881 original size:52 final size:53
Alignment explanation
Indices: 58938709--58938883 Score: 205
Period size: 52 Copynumber: 3.3 Consensus size: 53
58938699 TTGGTTTACA
* *
58938709 AAATTACCAAAATA-CCCT-GCTTTGTAAAATTACTAAAATACCCCTAGTTTGT
1 AAATTAACAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * *
58938761 AAAATTACCAAATTACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTG-
1 -AAATTAACAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* *
58938814 AAATTTATCAAAATACCCCTAG-TTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAA-TTAACAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* **
58938867 GAATTAACTGAATACCC
1 AAATTAACAAAATACCC
58938884 TCGACCTGAT
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
52 42 0.39
53 31 0.29
54 33 0.31
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
AAATTAACAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Done.