Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 216 of 444
Found at i:60445029 original size:29 final size:28
Alignment explanation
Indices: 60444959--60445033 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
60444949 ATACTCGATT
* *
60444959 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
60444987 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
60445016 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
60445034 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:60445050 original size:29 final size:29
Alignment explanation
Indices: 60445017--60445090 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60445007 CCTTCGAGCT
60445017 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60445046 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60445075 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60445091 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60448212 original size:28 final size:28
Alignment explanation
Indices: 60448180--60448248 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
60448170 GCGTAGATCA
60448180 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60448208 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60448236 CGATA-TACCCCTA
1 CGAAATTACCCCTA
60448249 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60451951 original size:28 final size:28
Alignment explanation
Indices: 60451919--60451987 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
60451909 GCGTAGATCA
60451919 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60451947 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60451975 CGATA-TACCCCTA
1 CGAAATTACCCCTA
60451988 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60455688 original size:28 final size:28
Alignment explanation
Indices: 60455656--60455724 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
60455646 GCGTAGATCA
60455656 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60455684 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60455712 CGATA-TACCCCTA
1 CGAAATTACCCCTA
60455725 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60460079 original size:46 final size:46
Alignment explanation
Indices: 60459888--60460151 Score: 225
Period size: 46 Copynumber: 5.7 Consensus size: 46
60459878 AGATTTGTGT
* *
60459888 GCCAGTGTAAGACATGTCTGGAACATGCATCGGCCAT--ATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGATA
* * * * * **
60459934 GCCAGTGAAAGACCATATCTGGGACATGGCATCAGCATTGAGATGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGATA
* * * * * * *
60459982 GCTAGTGTAAGACATGTCTTGGAAATGCATCAGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATA
* *
60460028 GCCAGTGTAAGACATGTCTTGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
* * * *
60460074 ACCAGTGTCAGACATGTCTGGGACATGCGTCTG-CTACGAGATG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATA
*
60460118 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
60460152 ACGGTTACAT
Statistics
Matches: 175, Mismatches: 35, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
44 28 0.16
45 4 0.02
46 96 0.55
47 25 0.14
48 21 0.12
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
Found at i:60467028 original size:47 final size:46
Alignment explanation
Indices: 60466930--60467057 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
60466920 AATAGATAAG
* * * ** *
60466930 TACCTATACCATTGCCTGTAGCCAAATCAAGGGAACTTATCCCCGAG
1 TACCTATACCA-TGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* *
60466977 TACCTATACCATGACCCGTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATACCATG-CCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* *
60467024 TACCTATATCATGGGCCGTAGCCAAATCAAGGTA
1 TACCTATACCAT-GCCCGTAGCCAAATCAAGGTA
60467058 CTATTCGTAC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 2 0.03
47 66 0.96
48 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.23
Consensus pattern (46 bp):
TACCTATACCATGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
Found at i:60472660 original size:40 final size:40
Alignment explanation
Indices: 60472586--60472767 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 40
60472576 AACCCAAGTA
* * * *
60472586 CCTTCGAGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
60472625 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
60472665 CCTTCTGGACTTAGCCCGTATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
60472705 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
60472745 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
60472768 CATTCGAATT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 11 0.09
40 110 0.89
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:60485126 original size:43 final size:43
Alignment explanation
Indices: 60484969--60485127 Score: 198
Period size: 43 Copynumber: 3.7 Consensus size: 43
60484959 TATGTTTTTT
* *
60484969 CGTGTAAGACCACGTCTGGGGCATTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* *
60485013 CGTGTAAGACTACGTCTGGGACATTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* *
60485055 CGTGTAAGACC-CTGTCTGTGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* *
60485098 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
60485128 TGTATATGCT
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.30
43 37 0.37
44 31 0.31
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:60495993 original size:39 final size:39
Alignment explanation
Indices: 60495939--60496087 Score: 217
Period size: 39 Copynumber: 3.8 Consensus size: 39
60495929 CAGTGATGTT
* **
60495939 TATCCGGACTTAGGGTCCGCAAACTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* **
60495978 TATCCGGACTTAGGGTCTTCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
60496017 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
60496056 TAACCGGACTTAAGGTCCGCAGGCTACGTGCT
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCT
60496088 AGAAATATGT
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:60496128 original size:78 final size:78
Alignment explanation
Indices: 60495939--60496135 Score: 184
Period size: 78 Copynumber: 2.5 Consensus size: 78
60495929 CAGTGATGTT
** * ** * * * **
60495939 TATCCGGACTTAGGGTCCGCAAACTATGTGCTGGAATTATATCCGGACTTAGGGTCTTCAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
* * *
60496004 TGTGCTGGAATTA
66 CGTGCTAGAAATA
* *
60496017 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
60496082 CGTGCTAGAAATA
66 CGTGCTAGAAATA
* * *
60496095 TGTCCGTG-C-TAAATTCCAGCAGGCT-TCGAGCTGGTATTATA
1 TATCCG-GACTTAAAGTCCA-CAGGCTAT-GAGCTGGAATTATA
60496136 CCGCGTTTAA
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
77 8 0.08
78 91 0.91
79 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
CGTGCTAGAAATA
Found at i:60503792 original size:39 final size:39
Alignment explanation
Indices: 60503738--60503890 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
60503728 CAGTGATGTT
* * *
60503738 TATCCGGACTTAGGGTCCGCAAGTTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
60503777 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
60503816 TATCTGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
60503855 TAACCGGACTTAAGGTTCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
60503891 ATATGTCTGG
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:60503915 original size:39 final size:39
Alignment explanation
Indices: 60503738--60503934 Score: 198
Period size: 39 Copynumber: 5.1 Consensus size: 39
60503728 CAGTGATGTT
* * * * *
60503738 TATCCGGACTTAGGGTCCGCAAGTTATGTGCTGGAATTA
1 TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * *
60503777 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
60503816 TATCTGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * *
60503855 TAACCGGACTTAAGGTTCGCAGGCTACGTGCTGGAAATA
1 TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * * *
60503894 TGTCTGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTATTA
1 TATCTGGACTTAAGGT-CCGCAGGCTACGTGCTGGAATTA
60503933 TA
1 TA
60503935 CCGGGTTTAA
Statistics
Matches: 135, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
38 5 0.04
39 130 0.96
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:60503918 original size:78 final size:78
Alignment explanation
Indices: 60503762--60503910 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 78
60503752 GTCCGCAAGT
* * * *
60503762 TATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTT
1 TATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCTGGACTT
*
60503827 AAGGTCCACAGGC
66 AAAGTCCACAGGC
* * *
60503840 TATGTGCTGGAATTATAACCGGACTTAAGGTTCGCAGGCTACGTGCTGGAAATATGTCTGGGC-T
1 TATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCTGGACTT
60503904 AAAGTCC
66 AAAGTCC
60503911 CGCAGGCTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 7 0.11
78 56 0.89
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (78 bp):
TATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCTGGACTT
AAAGTCCACAGGC
Found at i:60509390 original size:29 final size:29
Alignment explanation
Indices: 60509357--60509430 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60509347 GTGACGAGAT
60509357 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
60509386 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60509415 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60509431 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60509446 original size:29 final size:28
Alignment explanation
Indices: 60509414--60509488 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
60509404 CTGGAAATAT
* *
60509414 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
60509443 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
60509471 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
60509489 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:60509457 original size:58 final size:57
Alignment explanation
Indices: 60509357--60509488 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
60509347 GTGACGAGAT
* * * * * *
60509357 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
60509415 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
60509472 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
60509489 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:60516588 original size:29 final size:29
Alignment explanation
Indices: 60516555--60516628 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60516545 GTGACGAGAT
60516555 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
60516584 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60516613 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60516629 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60516644 original size:29 final size:29
Alignment explanation
Indices: 60516612--60516687 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
60516602 CTGGAAATAT
* *
60516612 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
60516641 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
60516670 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
60516688 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:60521366 original size:20 final size:20
Alignment explanation
Indices: 60521318--60521358 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
60521308 TATTGGTCCG
*
60521318 TAAGCCCATTGGGCCCAGTT
1 TAAGCCCATTGGGCCCAATT
60521338 TAAGCCCATTGGGCCCAATT
1 TAAGCCCATTGGGCCCAATT
60521358 T
1 T
60521359 TGGCCCATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (20 bp):
TAAGCCCATTGGGCCCAATT
Found at i:60529565 original size:15 final size:15
Alignment explanation
Indices: 60529545--60529586 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
60529535 TATTAAAGAT
60529545 ATGTTTTAG-ATTAAC
1 ATGTTTT-GTATTAAC
60529560 ATGTTTTGTATTAAC
1 ATGTTTTGTATTAAC
60529575 ATGTTTTGTATT
1 ATGTTTTGTATT
60529587 GGAATTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 1 0.04
15 25 0.96
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.55
Consensus pattern (15 bp):
ATGTTTTGTATTAAC
Found at i:60550941 original size:80 final size:80
Alignment explanation
Indices: 60550857--60551005 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60550847 TATGGTAACC
* * * *
60550857 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60550921 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60550937 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60551002 CCGG
66 CCGG
60551006 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60550947 original size:40 final size:38
Alignment explanation
Indices: 60550898--60551005 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60550888 ATCACGATTT
*
60550898 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60550938 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60550978 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60551006 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60553989 original size:19 final size:19
Alignment explanation
Indices: 60553967--60554009 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
60553957 AAGGCCAATA
* *
60553967 ACACGGCCCATGTGGGCCC
1 ACACGACCCATATGGGCCC
60553986 ACACGACCCATATGGGCCC
1 ACACGACCCATATGGGCCC
60554005 ACACG
1 ACACG
60554010 CCTGTGTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.09
Consensus pattern (19 bp):
ACACGACCCATATGGGCCC
Found at i:60574386 original size:55 final size:55
Alignment explanation
Indices: 60574299--60574423 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
60574289 GTTAATTTAA
* * * ** *
60574299 CAGGTTCGACCACGGGTGTTCCACACGAGCGTGTCGAATGCCCGTGTTGTTTTGG
1 CAGGCTCGACCATGGGTCTTCCACACGAGCGTGTCGAACACCCATGTTGTTTTGG
* * * *
60574354 CAGGCTCGACCATGGTTCTTCCGCACGGGCGTGTCGTACACCCATGTTGTTTTGG
1 CAGGCTCGACCATGGGTCTTCCACACGAGCGTGTCGAACACCCATGTTGTTTTGG
*
60574409 CAGGCTCGATCATGG
1 CAGGCTCGACCATGG
60574424 CTATATTGCA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.14, C:0.27, G:0.31, T:0.27
Consensus pattern (55 bp):
CAGGCTCGACCATGGGTCTTCCACACGAGCGTGTCGAACACCCATGTTGTTTTGG
Found at i:60581381 original size:43 final size:44
Alignment explanation
Indices: 60581334--60581454 Score: 106
Period size: 43 Copynumber: 2.8 Consensus size: 44
60581324 CATGTAACTC
* *
60581334 AATATCGATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCA
1 AATATCGATGCCTATGTCCCAGACAAGGTCTTACACGCAAATCA
* ** * * *
60581377 AATAT-GATG-TTGATGTCCCAGGTATGGTCTTATACGCAAATCT
1 AATATCGATGCCT-ATGTCCCAGACAAGGTCTTACACGCAAATCA
* * *
60581420 CA-ATCGAGGCCTGTGTCCCAGACAAGGTCTTACAC
1 AATATCGATGCCTATGTCCCAGACAAGGTCTTACAC
60581455 AATGTCACAG
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (44 bp):
AATATCGATGCCTATGTCCCAGACAAGGTCTTACACGCAAATCA
Found at i:60582917 original size:27 final size:27
Alignment explanation
Indices: 60582894--60583017 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
60582884 CAATTTACAG
60582894 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
60582921 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
60582948 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
60582975 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
60583002 AATTACTAAAATACCC
1 AATTACCAAAATACCC
60583018 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:60582936 original size:54 final size:53
Alignment explanation
Indices: 60582878--60583017 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
60582868 ATTATCGTTT
60582878 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
60582932 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
60582986 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
60583018 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:60583030 original size:27 final size:27
Alignment explanation
Indices: 60583000--60583061 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60582990 CATGGTTTGA
60583000 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
60583027 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
60583054 AAAATTAC
1 AAAATTAC
60583062 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:60583030 original size:54 final size:54
Alignment explanation
Indices: 60582894--60583044 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
60582884 CAATTTACAG
* ** * * *
60582894 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
60582948 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
60583002 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
60583045 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:60583046 original size:81 final size:81
Alignment explanation
Indices: 60582894--60583046 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
60582884 CAATTTACAG
* **
60582894 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
60582959 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
60582975 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
60583038 AATACCCTT
64 AATACCCTT
60583047 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:60590457 original size:37 final size:37
Alignment explanation
Indices: 60590415--60590495 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
60590405 CGGGGTTTTA
* *
60590415 ACCCGGATAAAATCCCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCCCCACACGTAGTCATCGGGTCTT
* *
60590452 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCCCCACACGTAGTCATCGGGTCTT
60590489 ACCCGGA
1 ACCCGGA
60590496 ATATATTTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.20
Consensus pattern (37 bp):
ACCCGGACAAAATCCCCACACGTAGTCATCGGGTCTT
Found at i:60590769 original size:48 final size:48
Alignment explanation
Indices: 60590654--60590779 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
60590644 TATTGCACAA
* ** *
60590654 TAGCCATTCGGCTTTACCAAATATACATCCCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
60590702 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
60590750 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
60590780 ATTTACCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:60595813 original size:46 final size:46
Alignment explanation
Indices: 60595638--60595813 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
60595628 TGTAACCCGC
* * *
60595638 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
60595684 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
60595730 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60595777 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60595814 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.63
47 29 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60595816 original size:93 final size:93
Alignment explanation
Indices: 60595646--60595816 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
60595636 GCCCATAAGT
* *
60595646 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60595711 TGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* *
60595739 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
60595804 CGAGTTCGGATGC
66 CGAGCTCAGATGC
60595817 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:60598239 original size:15 final size:15
Alignment explanation
Indices: 60598215--60598262 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
60598205 AGGAAACCGA
60598215 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
60598230 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
60598244 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
60598260 ATA
1 ATA
60598263 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:60601364 original size:93 final size:92
Alignment explanation
Indices: 60601206--60601375 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
60601196 GCCCATAAGT
* *
60601206 GAACTCGGACTCAACTCAACAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
60601271 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
60601298 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAC-AGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60601363 CGAGTTCGGATGC
65 CGAGCTCGGATGC
60601376 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 20 0.27
93 53 0.73
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60601365 original size:46 final size:46
Alignment explanation
Indices: 60601198--60601372 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
60601188 TGTAACCCGC
* *
60601198 CCATAAGTGAACTCGGACTCAACTCAAC-AGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60601243 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
60601289 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60601336 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60601373 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 28 0.25
46 41 0.37
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60601391 original size:46 final size:46
Alignment explanation
Indices: 60601203--60601391 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
60601193 CCCGCCCATA
** * *
60601203 AGTGAACTCGGACTCAACTCAAC-AGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T
60601247 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * *
60601297 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
60601341 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
60601387 AGTGA
1 AGTGA
60601392 CATGTCACTT
Statistics
Matches: 115, Mismatches: 13, Indels: 31
0.72 0.08 0.19
Matches are distributed among these distances:
44 9 0.08
45 24 0.21
46 41 0.36
47 30 0.26
49 4 0.03
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:60601831 original size:30 final size:29
Alignment explanation
Indices: 60601797--60601854 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
60601787 CCAAAATCAT
60601797 ATTTTGGAAAAATTACAATTTTGCCCCTAA
1 ATTTT-GAAAAATTACAATTTTGCCCCTAA
* * * *
60601827 ATTTTGCATATTTACACTTTTGCCCCTA
1 ATTTTGAAAAATTACAATTTTGCCCCTA
60601855 GGCTCGGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (29 bp):
ATTTTGAAAAATTACAATTTTGCCCCTAA
Found at i:60604952 original size:34 final size:33
Alignment explanation
Indices: 60604914--60604985 Score: 108
Period size: 34 Copynumber: 2.2 Consensus size: 33
60604904 TCGATCGCAA
*
60604914 TATCAGTGTGGGCCTTAGCCTAATGCAGTAATAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGT-ATAG
* *
60604948 TATCAGTGTGGGCCTTAGCCCACTTCAGTATAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGTATAG
60604981 TATCA
1 TATCA
60604986 AAGATGTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 9 0.26
34 26 0.74
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (33 bp):
TATCAGTGTGGGCCTTAGCCCAATGCAGTATAG
Found at i:60608950 original size:28 final size:28
Alignment explanation
Indices: 60608919--60608990 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
60608909 TCGATATTTT
* *
60608919 GCACACTAAGTGTCATTCTTAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
60608947 GCACGCTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
60608975 GTACACTAAGTACCAT
1 GCACACTAAGTGCCAT
60608991 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:60614167 original size:53 final size:54
Alignment explanation
Indices: 60614110--60614414 Score: 352
Period size: 55 Copynumber: 5.6 Consensus size: 54
60614100 AACTTACCAT
* * *
60614110 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCA-CTAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AA
* *
60614163 TGCCATGCCTTAGA-ATGGTCTTACATGAGA-CATTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTT-GACATGGTCTTACATGATATC-CTTGCCTTATAG-AACTCATCAA
* * * *
60614218 TCCCATGTCATGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* **
60614271 TGCCATGCCTTGGCATGGTCTTACATGGCA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
60614326 TGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
60614380 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
60614415 ATCTTACCAA
Statistics
Matches: 211, Mismatches: 30, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
52 3 0.01
53 74 0.35
54 47 0.22
55 83 0.39
56 4 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:60614307 original size:108 final size:108
Alignment explanation
Indices: 60614112--60614407 Score: 450
Period size: 108 Copynumber: 2.7 Consensus size: 108
60614102 CTTACCATTG
* * * * *
60614112 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTAGA
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
60614177 ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
66 ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
*
60614220 CCATGTCATGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
* *
60614285 ATGGTCTTACATG-GCACCTTTGCCTTATAGTAACTCATCAATG
66 ATGGTCTTACATGAG-ACATTTGCCTTATAGTAACTCATCAATC
* * * * *
60614328 TCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAATGCCATGCCTTGG
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
60614393 CATGGTCTTACATGA
65 CATGGTCTTACATGA
60614408 TATCCTTATC
Statistics
Matches: 171, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
107 1 0.01
108 135 0.79
109 35 0.20
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (108 bp):
CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
Found at i:60614509 original size:47 final size:47
Alignment explanation
Indices: 60614393--60614514 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
60614383 CATGCCTTGG
*
60614393 CATGGTCTTACA-TGATATCCTTATCTTACCAAATGACATGTTCCAAA
1 CATGGTCTTACATTG-TATCCTTGTCTTACCAAATGACATGTTCCAAA
* *
60614440 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATTGTATCCTTGTCTTACCAAATGACATGTTCCAAA
* *
60614487 CCTGGTCTTACATTGTACCCTTGTCTTA
1 CATGGTCTTACATTGTATCCTTGTCTTA
60614515 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATTGTATCCTTGTCTTACCAAATGACATGTTCCAAA
Found at i:60624429 original size:46 final size:47
Alignment explanation
Indices: 60624327--60624517 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
60624317 TTAGGATTTT
60624327 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
60624374 ATGTGATGAATGTGAGCATGCATATATGTGATAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60624420 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
60624467 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60624512 ATGTGA
1 ATGTGA
60624518 AATATATATA
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
45 25 0.19
46 45 0.34
47 63 0.47
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60624429 original size:93 final size:92
Alignment explanation
Indices: 60624327--60624517 Score: 294
Period size: 93 Copynumber: 2.1 Consensus size: 92
60624317 TTAGGATTTT
* *
60624327 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
60624392 TGCATATATGTGAT-AAGCCGAATGGCCA
66 TGC--ATATGTGATAAAGCCGAATGGCCA
* * *
60624420 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
* *
60624485 TGCATATGTGGTAAAGCCGAATGGTCA
66 TGCATATGTGATAAAGCCGAATGGCCA
60624512 ATGTGA
1 ATGTGA
60624518 AATATATATA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
91 8 0.09
92 19 0.21
93 63 0.70
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (92 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATGTGATAAAGCCGAATGGCCA
Found at i:60624549 original size:50 final size:50
Alignment explanation
Indices: 60624476--60624622 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
60624466 AATGTGGTGA
*
60624476 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
60624525 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
60624575 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
60624623 GTAGGCGATG
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 7 0.08
50 86 0.92
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:60624880 original size:37 final size:37
Alignment explanation
Indices: 60624772--60624880 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
60624762 GGAAATATAT
*
60624772 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
60624809 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
60624846 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
60624881 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:60626454 original size:40 final size:40
Alignment explanation
Indices: 60626136--60626442 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
60626126 GAGAATTGAG
60626136 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60626176 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60626216 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
60626256 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60626296 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
60626335 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
60626374 AGTGATATATCC--GCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
60626411 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
60626443 ATCATGCTGG
Statistics
Matches: 251, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
37 32 0.13
39 71 0.28
40 148 0.59
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:60630652 original size:46 final size:47
Alignment explanation
Indices: 60630599--60630788 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
60630589 TTAGGATTTT
*
60630599 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCC-AATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* *
60630645 ATGTGATGAATGTGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * *
60630692 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * *
60630739 ATGTG-TGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
60630783 ATGTGA
1 ATGTGA
60630789 AATATATATA
Statistics
Matches: 130, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
44 25 0.19
46 48 0.37
47 57 0.44
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
Found at i:60630701 original size:93 final size:91
Alignment explanation
Indices: 60630599--60630788 Score: 301
Period size: 93 Copynumber: 2.1 Consensus size: 91
60630589 TTAGGATTTT
* *
60630599 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG-TGAATATGAACA
60630663 TGCATATATGTGGTAAAGCCGAATGGCCA
65 TGC--ATATGTGGTAAAGCCGAATGGCCA
* *
60630692 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGTGAATATGAACAT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGTGAATATGAACAT
*
60630757 GCATATGTGGTAAAGCCGAATGGTCA
66 GCATATGTGGTAAAGCCGAATGGCCA
60630783 ATGTGA
1 ATGTGA
60630789 AATATATATA
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
91 29 0.32
93 49 0.54
94 13 0.14
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (91 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGTGAATATGAACAT
GCATATGTGGTAAAGCCGAATGGCCA
Found at i:60630705 original size:47 final size:47
Alignment explanation
Indices: 60630599--60630880 Score: 281
Period size: 50 Copynumber: 6.0 Consensus size: 47
60630589 TTAGGATTTT
* * * *
60630599 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCC-AATGGCCA
1 ATGTGATGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
*
60630645 ATGTGATGAATGTGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
* * * *
60630692 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
* *
60630739 ATGTG-TGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
* * *
60630783 ATGTGAAATATATATATGAGATATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTG--AT-GA-ATATGAG-CATGCATATATGTGGTAAAGCCGAATGGCCA
* **
60630833 ATGTGAAATATATATATGAG-ATATATATATGTGGTAAAGCCGAATGGC
1 ATGTG--AT-GA-ATATGAGCATGCATATATGTGGTAAAGCCGAATGGC
60630881 TAGTGTGAAA
Statistics
Matches: 209, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
44 25 0.12
46 48 0.23
47 58 0.28
48 3 0.01
49 6 0.03
50 69 0.33
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
Found at i:60630807 original size:44 final size:43
Alignment explanation
Indices: 60630611--60630843 Score: 198
Period size: 47 Copynumber: 5.0 Consensus size: 43
60630601 GTGATGAATG
* * *
60630611 TGAACATGCATATATGTGATAAGGCC-AATGGCCAATGTGATGAATG
1 TGAACATGC--ATATGTGGTAAAGCCGAATGGCCAATGTGA--AATA
* *
60630657 TGAGCATGCATATATGTGGTAAAGCCGAATGGCCAATGTGATGAATG
1 TGAACATGC--ATATGTGGTAAAGCCGAATGGCCAATGTGA--AATA
* * *
60630704 TGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGTGAATA
1 TGAACATGCATATGTG-G-TAAAGCCGAATGGCCAATGTG-AAATA
*
60630750 TGAACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATA
1 TGAACATGCATATGTGGTAAAGCCGAATGGCCAATGTG----A-A-ATA
* *
60630799 TGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATA
1 TGA-ACATGCATATGTGGTAAAGCCGAATGGCCAATGTGAAATA
60630843 T
1 T
60630844 ATATATGAGA
Statistics
Matches: 166, Mismatches: 11, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
44 23 0.14
45 9 0.05
46 43 0.26
47 50 0.30
48 1 0.01
49 6 0.04
50 34 0.20
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (43 bp):
TGAACATGCATATGTGGTAAAGCCGAATGGCCAATGTGAAATA
Found at i:60646389 original size:39 final size:40
Alignment explanation
Indices: 60646289--60646479 Score: 185
Period size: 39 Copynumber: 4.8 Consensus size: 40
60646279 TCGAATGATG
* * *
60646289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
60646329 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60646369 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
60646408 CCCGGGTTAAGTCCCGAAGGCATTCG-GCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
60646448 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
60646480 CGTTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 63 0.51
40 54 0.44
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60646429 original size:79 final size:81
Alignment explanation
Indices: 60646289--60646472 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
60646279 TCGAATGATG
* * *
60646289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
60646353 CGTGCGAGTTAATA-AA
66 CG-GCGAGTCAATATAA
* **
60646369 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
60646431 TCGGCGAGTCACTATAA
65 TCGGCGAGTCAATATAA
**
60646448 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60646473 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 18 0.20
79 54 0.60
80 18 0.20
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGGCGAGTCAATATAA
Found at i:60649488 original size:21 final size:22
Alignment explanation
Indices: 60649448--60649489 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
60649438 ACTTAAATAG
**
60649448 TCACACGGGTGTGTTGCCCCTC
1 TCACACGGACGTGTTGCCCCTC
60649470 TCACACGGACGTG-TGCCCCT
1 TCACACGGACGTGTTGCCCCT
60649490 GTGTTAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.38, G:0.26, T:0.24
Consensus pattern (22 bp):
TCACACGGACGTGTTGCCCCTC
Found at i:60662431 original size:43 final size:43
Alignment explanation
Indices: 60662278--60662432 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
60662268 GAATTAAGAA
* * ** * *
60662278 ATCCGAGCTCATTGAGTGGTCTGAGTTTGTGATATATGTGAGA
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATACATGTGAGC
* * * * *
60662321 ATCCGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AGC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATACATGTGAGC
* * * * * *
60662363 ATCTGAGATCATTGAGTGGTTCGAGTTCATTATGCATGTGAGC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATACATGTGAGC
*
60662406 ATCCGAGCTCGTTGAATGGTCCGAGTT
1 ATCCGAGCTCGTTGAGTGGTCCGAGTT
60662433 AATAATGGAT
Statistics
Matches: 88, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 30 0.34
43 58 0.66
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATACATGTGAGC
Found at i:60664419 original size:41 final size:44
Alignment explanation
Indices: 60664374--60664512 Score: 142
Period size: 45 Copynumber: 3.2 Consensus size: 44
60664364 AAAAAAAAAA
60664374 CCCGAAT-ACAT-TCACAGGCATT-TCA-CCTGCTAGGCTCGAGG
1 CCCGAATAACATCTCACAGGCATTAT-AGCCTGCTAGGCTCGAGG
* * *
60664415 CCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGG
1 CCCGAATAACATCTCACAGGCATTATAGCCTGCTAGGCTC-GAGG
** * * * *
60664460 CCTAAATAATATCTCACAGACATTATAGCCTGCTAAGCTCAAAGG
1 CCCGAATAACATCTCACAGGCATTATAGCCTGCTAGGCTC-GAGG
60664505 CCCGAATA
1 CCCGAATA
60664513 GTACTGTACA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
41 7 0.08
42 3 0.04
43 11 0.13
44 13 0.16
45 49 0.59
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (44 bp):
CCCGAATAACATCTCACAGGCATTATAGCCTGCTAGGCTCGAGG
Found at i:60664450 original size:44 final size:45
Alignment explanation
Indices: 60664399--60664512 Score: 167
Period size: 45 Copynumber: 2.6 Consensus size: 45
60664389 AGGCATTTCA
* * *
60664399 CCTGCTAGGCTC-GAGGCCCGAATAATATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACAGACATTATAG
**
60664443 CCTGCTAGGCTCAAAGGCCTAAATAATATCTCACAGACATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACAGACATTATAG
*
60664488 CCTGCTAAGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCAAAGGCCCGAATA
60664513 GTACTGTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
44 12 0.20
45 49 0.80
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACAGACATTATAG
Found at i:60670621 original size:47 final size:46
Alignment explanation
Indices: 60670453--60670623 Score: 177
Period size: 47 Copynumber: 3.7 Consensus size: 46
60670443 TTATTTGTGT
* * * * *
60670453 GCCAGTGTAAGACATGCCTGAGACATTCATCGGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * *
60670499 GCCAGTGTAAGACCATG-CTTGGGACATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTC-TGGGACAT-GCATCGGCCTCGAGATGAGA
* *
60670547 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGAATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-ATG-AGA
60670594 GCCAGTGTAAGACATGTCTGGGACATGCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCAT
60670624 TAGCTACAAG
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 25 0.24
47 54 0.52
48 24 0.23
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:60672304 original size:93 final size:93
Alignment explanation
Indices: 60672192--60672362 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60672182 GCCCATAAGT
* *
60672192 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60672257 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60672285 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60672350 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60672363 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60672378 original size:46 final size:46
Alignment explanation
Indices: 60672184--60672364 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
60672174 TGTAACCCGC
* * *
60672184 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60672230 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60672280 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
60672323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
60672365 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60674779 original size:30 final size:30
Alignment explanation
Indices: 60674735--60674823 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
60674725 CAAAGATAAC
60674735 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
60674764 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
60674794 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
60674824 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:60674783 original size:15 final size:15
Alignment explanation
Indices: 60674735--60674814 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
60674725 CAAAGATAAC
*
60674735 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
60674749 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
60674764 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
60674779 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
60674794 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
60674809 AAGAAA
1 AAGAAA
60674815 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:60674823 original size:15 final size:15
Alignment explanation
Indices: 60674746--60674823 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
60674736 AGAAAACCGA
60674746 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
60674761 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
60674775 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
60674790 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
60674806 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
60674821 ATA
1 ATA
60674824 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:60677868 original size:93 final size:93
Alignment explanation
Indices: 60677756--60677926 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60677746 GCCCATAAGT
* *
60677756 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60677821 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60677849 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60677914 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60677927 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60677942 original size:46 final size:46
Alignment explanation
Indices: 60677748--60677928 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
60677738 TGTAACCCGC
* * *
60677748 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60677794 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60677844 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
60677887 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
60677929 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60682389 original size:29 final size:29
Alignment explanation
Indices: 60682347--60682405 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
60682337 AAAGGATTAT
60682347 GAGCTGATCATTGACTATCACCCGGGAAA
1 GAGCTGATCATTGACTATCACCCGGGAAA
60682376 GAGCTGATCATTGACTATCACCCGGGAAA
1 GAGCTGATCATTGACTATCACCCGGGAAA
60682405 G
1 G
60682406 GCGAATTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (29 bp):
GAGCTGATCATTGACTATCACCCGGGAAA
Found at i:60685678 original size:28 final size:28
Alignment explanation
Indices: 60685609--60685709 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60685599 GACAAGATTG
* * * *
60685609 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
60685639 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
60685667 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
60685696 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60685710 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60690811 original size:33 final size:32
Alignment explanation
Indices: 60690752--60690815 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
60690742 ACGGAGTCAC
* *
60690752 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
60690784 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
60690816 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:60695185 original size:26 final size:27
Alignment explanation
Indices: 60695156--60695214 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
60695146 ATACATCTCA
*
60695156 TAGGGG-ATAACAGTCATTTTATGAAC
1 TAGGGGCATAACAGTCATTTTATCAAC
*
60695182 TAGGGGCATAATAGTCATTTTATCAAC
1 TAGGGGCATAACAGTCATTTTATCAAC
60695209 TAGGGG
1 TAGGGG
60695215 GTCCAGGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 6 0.20
27 24 0.80
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (27 bp):
TAGGGGCATAACAGTCATTTTATCAAC
Found at i:60697649 original size:28 final size:28
Alignment explanation
Indices: 60697584--60697680 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 28
60697574 CATGAGATTG
* * *
60697584 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
60697613 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
60697641 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
60697669 GCACTAAGTGTG
1 GCACTAAGTGTG
60697681 TGGGCTTATT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.70
29 17 0.28
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:60699968 original size:28 final size:26
Alignment explanation
Indices: 60699895--60699968 Score: 62
Period size: 28 Copynumber: 2.7 Consensus size: 26
60699885 AATAACATAA
* *
60699895 CAAAGCTACTAATAACAATAAACGTGG
1 CAAAGCCACTAAT-ACAGTAAACGTGG
*
60699922 CAAAGCCACCAGAGT--AGTAATTACGTGG
1 CAAAGCCACTA-A-TACAGTAA--ACGTGG
60699950 CAAAGCCACTAATACAGTA
1 CAAAGCCACTAATACAGTA
60699969 CTTCCTCCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
26 5 0.14
27 10 0.27
28 21 0.57
29 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (26 bp):
CAAAGCCACTAATACAGTAAACGTGG
Found at i:60706346 original size:93 final size:93
Alignment explanation
Indices: 60706233--60706403 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
60706223 GCCCATAAGT
* *
60706233 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60706298 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
60706326 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60706391 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60706404 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60706419 original size:46 final size:46
Alignment explanation
Indices: 60706225--60706405 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
60706215 TGTAACCCGC
* * * *
60706225 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60706271 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60706321 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
60706364 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
60706406 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60711202 original size:29 final size:28
Alignment explanation
Indices: 60711147--60711221 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 28
60711137 ATGCTTTTGG
*
60711147 CCCACTAGGCCCAATCTCATTCATATGA
1 CCCACTAGGCCCAATCACATTCATATGA
* *
60711175 CCCATTAGGCCCAAATCACA-TCTATATGG
1 CCCACTAGGCCC-AATCACATTC-ATATGA
60711204 CCCACTAGGCCCAATCAC
1 CCCACTAGGCCCAATCAC
60711222 TTTTATAGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.29, C:0.37, G:0.12, T:0.21
Consensus pattern (28 bp):
CCCACTAGGCCCAATCACATTCATATGA
Found at i:60711228 original size:28 final size:28
Alignment explanation
Indices: 60711144--60711228 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
60711134 TACATGCTTT
* *
60711144 TGGCCCACTAGGCCCAATCTCATTCATA
1 TGGCCCACTAGGCCCAATCACATTTATA
* * *
60711172 TGACCCATTAGGCCCAAATCACATCTATA
1 TGGCCCACTAGGCCC-AATCACATTTATA
*
60711201 TGGCCCACTAGGCCCAATCACTTTTATA
1 TGGCCCACTAGGCCCAATCACATTTATA
60711229 GTCATGCTCA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.26
Consensus pattern (28 bp):
TGGCCCACTAGGCCCAATCACATTTATA
Found at i:60711463 original size:16 final size:16
Alignment explanation
Indices: 60711442--60711474 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60711432 GCCAAACTTC
*
60711442 CAGCTTTTCGGTATTT
1 CAGCTTTTCGGCATTT
60711458 CAGCTTTTCGGCATTT
1 CAGCTTTTCGGCATTT
60711474 C
1 C
60711475 GGGATTTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.18, T:0.45
Consensus pattern (16 bp):
CAGCTTTTCGGCATTT
Found at i:60717138 original size:14 final size:16
Alignment explanation
Indices: 60717121--60717152 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60717111 AATTTTTATA
60717121 TTTATTT-T-TAAATT
1 TTTATTTATATAAATT
60717135 TTTATTTATATAAATT
1 TTTATTTATATAAATT
60717151 TT
1 TT
60717153 GAATTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 1 0.06
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATTTATATAAATT
Found at i:60717645 original size:7 final size:7
Alignment explanation
Indices: 60717633--60717664 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
60717623 TAAAGAATTT
60717633 TTTTATC
1 TTTTATC
60717640 TTTTATC
1 TTTTATC
60717647 TTTTATC
1 TTTTATC
60717654 TTTTAT-
1 TTTTATC
60717660 TTTTA
1 TTTTA
60717665 GATATGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTATC
Found at i:60718220 original size:21 final size:22
Alignment explanation
Indices: 60718166--60718229 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
60718156 GACTTTTGAT
* *
60718166 CCAATAATTATAATT-TATCAAC
1 CCAATAAATATTATTCTATC-AC
**
60718188 CCAATATTTATT-TTCTATCAC
1 CCAATAAATATTATTCTATCAC
*
60718209 CCAATAAATATTATTCAATCA
1 CCAATAAATATTATTCTATCA
60718230 ATTAATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (22 bp):
CCAATAAATATTATTCTATCAC
Found at i:60727438 original size:46 final size:47
Alignment explanation
Indices: 60727203--60727557 Score: 207
Period size: 46 Copynumber: 7.5 Consensus size: 47
60727193 AGTCGATGTA
* * * ** * *
60727203 ATGTCCCAAACATGGTCTTACACTGACTATTGAAATCGAGGCCGACGTC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTACATATCGAGGCCGATG-C
* * *
60727252 ATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-TGTCGATGCC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATAT-CGAGGCCGATG-C
* * ** *
60727302 ATGTTCGAGACATGGTCTTACACTAAAAC-CT-C-TATACGTA--CTGATGCC
1 ATGTCCCAGACAT-GTCTTACACT--GGCTCTACATAT-CG-AGGCCGATG-C
* * * *
60727350 AGGTTCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTACATATCG-AGGCCGATGC
60727395 ATGTCCCAGACATGTCTTACACTGGCT-TACATATCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCCGATGC
* * * * **
60727441 ATGTGCCAGACATGTCTTACACTAGCTCT-CATCTCAATACCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCCGATG-C
* * *
60727488 ATGTCCTAGACATTGTCTTACACTGGCTCTCACA-AT-GTGGCTGATGC
1 ATGTCCCAGACA-TGTCTTACACTGGCTCT-ACATATCGAGGCCGATGC
60727535 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
60727558 AGCACACAAA
Statistics
Matches: 245, Mismatches: 42, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.04
45 20 0.08
46 70 0.29
47 24 0.10
48 54 0.22
49 28 0.11
50 33 0.13
51 4 0.02
52 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCCGATGC
Found at i:60727534 original size:94 final size:92
Alignment explanation
Indices: 60727355--60727565 Score: 270
Period size: 94 Copynumber: 2.3 Consensus size: 92
60727345 ATGCCAGGTT
*
60727355 CCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
1 CCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACT
*
60727418 GGCTTACATATCGAGGCCGATGCATGTG
65 GGCTTACATATCGAGGCCGATGCATGTC
* * *
60727446 CCAGACATGTCTTACACTAGCTCTCATCTCAATA-CCGATGCCATGTCCTAGACATTGTCTTACA
1 CCAGACATGTCTTACACTAGCACACATCTC-ATAGCCGATG-CATGTCCCAGACA-TGTCTTACA
* *
60727510 CTGGCTCTCACA-AT-GTGGCTGATGCATGTC
63 CTGGCT-T-ACATATCGAGGCCGATGCATGTC
60727540 CCAGACATGTCTTACACTAGCACACA
1 CCAGACATGTCTTACACTAGCACACA
60727566 AATAACCTAA
Statistics
Matches: 104, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
90 10 0.10
91 9 0.09
92 13 0.12
93 14 0.13
94 52 0.50
95 3 0.03
96 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
CCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTG
GCTTACATATCGAGGCCGATGCATGTC
Found at i:60736739 original size:13 final size:13
Alignment explanation
Indices: 60736721--60736745 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60736711 AATTGATATC
60736721 TGTGAAAATTTTG
1 TGTGAAAATTTTG
60736734 TGTGAAAATTTT
1 TGTGAAAATTTT
60736746 ATCGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:60736853 original size:19 final size:19
Alignment explanation
Indices: 60736824--60736860 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
60736814 ATAAGGTTAA
60736824 AAAGGTAATT-AATAAAAT
1 AAAGGTAATTAAATAAAAT
60736842 AAAGGTTAATTAAATAAAA
1 AAAGG-TAATTAAATAAAA
60736861 CCAAAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (19 bp):
AAAGGTAATTAAATAAAAT
Found at i:60742425 original size:10 final size:10
Alignment explanation
Indices: 60742410--60742438 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
60742400 GCCAAGGTCG
60742410 TTTTGGGCCA
1 TTTTGGGCCA
60742420 TTTTGGGCCA
1 TTTTGGGCCA
60742430 TTTTGGGCC
1 TTTTGGGCC
60742439 GAACTGGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.07, C:0.21, G:0.31, T:0.41
Consensus pattern (10 bp):
TTTTGGGCCA
Found at i:60742747 original size:27 final size:27
Alignment explanation
Indices: 60742706--60742785 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
60742696 CTCAAATCGA
60742706 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
60742733 TAAAATAACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
60742760 TAAGATGATTGTTTTGCCCTTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
60742786 ATGTATGCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:60744192 original size:48 final size:48
Alignment explanation
Indices: 60744135--60744359 Score: 306
Period size: 48 Copynumber: 4.7 Consensus size: 48
60744125 AATGTGTGCT
*
60744135 AGTGTAAGACTATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
60744183 GGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * *
60744231 AATGTAAGACCATGTTGGGAGCATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * ** * *
60744279 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * *
60744327 AGTGTAAGACCATGTCTGGGACATGGAATCGGC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
60744360 CTCGACATGT
Statistics
Matches: 158, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
Found at i:60744293 original size:25 final size:24
Alignment explanation
Indices: 60744169--60744293 Score: 55
Period size: 25 Copynumber: 5.2 Consensus size: 24
60744159 GGCATCGGCA
*
60744169 ATGTTATGAGAGCCGGTGTAAGACC
1 ATGTTATGAGAGCC-ATGTAAGACC
* * * *
60744194 ATGTT-TG-GA-ACATGGCATCGACA
1 ATGTTATGAGAGCCAT-GTA-AGACC
60744217 ATGTTATGAGAGCCAATGTAAGACC
1 ATGTTATGAGAGCC-ATGTAAGACC
* * * * *
60744242 ATG-T-TGGGAG-CATGGCATCGGCA
1 ATGTTATGAGAGCCAT-GTA-AGACC
60744265 ATGTTATGAGAGCCAGTGTAAGACC
1 ATGTTATGAGAGCCA-TGTAAGACC
60744290 ATGT
1 ATGT
60744294 CTGGGACATG
Statistics
Matches: 69, Mismatches: 19, Indels: 24
0.62 0.17 0.21
Matches are distributed among these distances:
21 3 0.04
22 6 0.09
23 20 0.29
24 6 0.09
25 24 0.35
26 7 0.10
27 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (24 bp):
ATGTTATGAGAGCCATGTAAGACC
Found at i:60744303 original size:96 final size:95
Alignment explanation
Indices: 60744137--60744405 Score: 315
Period size: 96 Copynumber: 2.8 Consensus size: 95
60744127 TGTGTGCTAG
* * * *
60744137 TGTAAGACTATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCGGTGTAAGACCATGTTTGG
1 TGTAAGACCATG-TTGGGACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
* ** *
60744202 AACATGGCATCGACAATGTTATGAGAGCCAA
65 GACATGGCATCGACAATGAGACGAGAGCCAA
60744233 TGTAAGACCATGTTGGGAGCATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTTGGGA-CATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
60744298 GACATGGCATCGGCATTGAGACGAGAGCTAG
65 GACATGGCATCGACAATGAGACGAGAGCCAA
* * ** * * * *
60744329 TGTAAGACCATGTCTGGGACATGGAATCGGC-CTCGACATGTGAGACATTGTAAGACCATGTCTA
1 TGTAAGACCATGT-TGGGACATGGCATCGGCAAT-GTTATGAGAGCCAGTGTAAGACCATGTCTG
60744393 GGACATGGCATCG
64 GGACATGGCATCG
60744406 GTAATTTACC
Statistics
Matches: 150, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
95 6 0.04
96 139 0.93
97 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (95 bp):
TGTAAGACCATGTTGGGACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACAATGAGACGAGAGCCAA
Found at i:60744381 original size:48 final size:46
Alignment explanation
Indices: 60744135--60744406 Score: 249
Period size: 48 Copynumber: 5.7 Consensus size: 46
60744125 AATGTGTGCT
* * * **
60744135 AGTGTAAGACTATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGACATGAGAG-C
* * * * **
60744183 GGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGACATGAGAG-C
* **
60744231 AATGTAAGACCATGT-TGGGAGCATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGGC-ATGACATGAGAG-C
* *
60744279 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGACATGAGAGC
* * *
60744326 TAGTGTAAGACCATGTCTGGGACATGGAATCGGCCTCGACATGTGAGAC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GACATGAGAG-C
* *
60744375 ATTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
60744407 TAATTTACCC
Statistics
Matches: 199, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
47 7 0.04
48 186 0.93
49 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGACATGAGAGC
Found at i:60744400 original size:144 final size:144
Alignment explanation
Indices: 60744135--60744406 Score: 332
Period size: 144 Copynumber: 1.9 Consensus size: 144
60744125 AATGTGTGCT
* * ** * * *
60744135 AGTGTAAGACTATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCGGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGACGAGAGCCAGTGTAAGACCATGTCT
* ** * *
60744200 GGAACATGGCATCGACAATGTTATGAGAGCCAATGTAAGACCATGTTGGGAGCATGGCATCGGCA
66 GGAACATGGAATCGACAATGACATGAGAGACAATGTAAGACCATGTTAGGAGCATGGCATCGGCA
60744265 ATGTTATGAGAGCC
131 ATGTTATGAGAGCC
* * *
60744279 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGACGAGAGCCAGTGTAAGACCATGTCT
* * * * *
60744344 GGGACATGGAATCGGC-CTCGACATGTGAGACATTGTAAGACCATGTCTAGGA-CATGGCATCGG
66 GGAACATGGAATCGACAAT-GACATGAGAGACAATGTAAGACCATGT-TAGGAGCATGGCATCGG
60744407 TAATTTACCC
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 1 0.01
144 101 0.95
145 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGACGAGAGCCAGTGTAAGACCATGTCT
GGAACATGGAATCGACAATGACATGAGAGACAATGTAAGACCATGTTAGGAGCATGGCATCGGCA
ATGTTATGAGAGCC
Found at i:60749460 original size:30 final size:30
Alignment explanation
Indices: 60749424--60749488 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
60749414 ACAGGGGACT
*
60749424 CACGGTCGTGTCACGTGGCCATGTGTGACA
1 CACGGTCGTGTCACGTGGCCATGTGTCACA
* **
60749454 CACGGTCGTGTCGCGTGGCTGTGTGTCACA
1 CACGGTCGTGTCACGTGGCCATGTGTCACA
60749484 CACGG
1 CACGG
60749489 CGGAGACACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (30 bp):
CACGGTCGTGTCACGTGGCCATGTGTCACA
Found at i:60761967 original size:45 final size:45
Alignment explanation
Indices: 60761903--60762071 Score: 259
Period size: 45 Copynumber: 3.8 Consensus size: 45
60761893 ACACAATTCG
*
60761903 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTTA
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTTA
* **
60761948 GGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTATTCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTTA
* *
60761993 GGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGATACTA-TTC
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTTA
*
60762037 GGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
60762072 AAGGATATCG
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
44 7 0.06
45 106 0.94
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTTA
Found at i:60762051 original size:90 final size:87
Alignment explanation
Indices: 60761898--60762113 Score: 283
Period size: 90 Copynumber: 2.4 Consensus size: 87
60761888 GTACAACACA
60761898 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTTAGGCCTTTGAGCCTAG
1 ATTCGGGCCTTTGAGCCTAGCAGGCTA-AATGCCGGTGAGACACTATTTAGGCCTTTGAGCCTAG
* *
60761963 CAGGCTATAATGCTGGTGAGATACT
65 CAGGCTATAATGCCGGTGA-A-ACG
* * *
60761988 ATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGATACTA-TTCGGGCTTTCGAGCCTA
1 ATTCGGGCCTTTGAGCCTAGCAGGCTA-AATGCCGGTGAGACACTATTTAGGCCTTT-GAGCCTA
*
60762052 GCAGGCTATAATGCCGGTGAAAGG
64 GCAGGCTATAATGCCGGTGAAACG
* * *
60762076 ATATCGGGTC-TCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AT-TCGGGCCTTTGAGCCTAGCAGGCTAAATGCCGGTGA
60762114 TTGAATTCGG
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
87 11 0.10
88 18 0.16
89 15 0.13
90 70 0.61
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (87 bp):
ATTCGGGCCTTTGAGCCTAGCAGGCTAAATGCCGGTGAGACACTATTTAGGCCTTTGAGCCTAGC
AGGCTATAATGCCGGTGAAACG
Found at i:60765820 original size:27 final size:26
Alignment explanation
Indices: 60765743--60765884 Score: 113
Period size: 27 Copynumber: 5.3 Consensus size: 26
60765733 TGTAGGGTAG
* **
60765743 AATTACCAAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
* *
60765770 AATTACCAAAAAACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAATTTGTAA
*
60765797 AATTACCAAAATACCTCTAATTTGTGA
1 AATTACCAAAATACC-CTAATTTGTAA
*** *
60765824 AATTATTGAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
* * **
60765851 AATTACCAAAGTACCCCCAATTTACAA
1 AATTACCAAAATA-CCCTAATTTGTAA
60765878 AATTACC
1 AATTACC
60765885 GTTTTACCCT
Statistics
Matches: 90, Mismatches: 21, Indels: 8
0.76 0.18 0.07
Matches are distributed among these distances:
26 4 0.04
27 79 0.88
28 7 0.08
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:60765892 original size:27 final size:27
Alignment explanation
Indices: 60765870--60766163 Score: 363
Period size: 27 Copynumber: 10.9 Consensus size: 27
60765860 AGTACCCCCA
* *
60765870 ATTTACAAAATTACCGTTTTACCCTCA
1 ATTTACAAAATTACCATTTTACCCTCG
* * *
60765897 ATTTATAGAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
60765924 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* *
60765951 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* * *** *
60765978 ATTTATAGAATTATTGTTTTGCCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
60766005 ATTTACAAAATTATCATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* *
60766032 ATTTACAAAATTACTATTTTATCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* * *
60766059 ATTTACAGAGTTACCGTTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* * ** *
60766086 ATTTATAGAATTACTGTTTTACCCTCA
1 ATTTACAAAATTACCATTTTACCCTCG
60766113 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
60766140 ATTTATAAAATTACCATTTTACCC
1 ATTTACAAAATTACCATTTTACCC
60766164 CTAGGGTGTT
Statistics
Matches: 230, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 230 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
ATTTACAAAATTACCATTTTACCCTCG
Found at i:60765893 original size:54 final size:54
Alignment explanation
Indices: 60765835--60765949 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
60765825 ATTATTGAAA
* *
60765835 TACCCTCAACTTGTAAAATTACCAAAGTACCCCCAATTTACAAAATTACCGTTT
1 TACCCTCAACTTATAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATTT
* * * *** * *
60765889 TACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAACTTATAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATTT
60765943 TACCCTC
1 TACCCTC
60765950 GATTTACAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (54 bp):
TACCCTCAACTTATAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATTT
Found at i:60765909 original size:81 final size:82
Alignment explanation
Indices: 60765824--60766152 Score: 198
Period size: 81 Copynumber: 4.1 Consensus size: 82
60765814 TAATTTGTGA
** *
60765824 AATTATTGA-AATACCCTCAACTTGTAAAATTACCAAAGTACCCCCAATTTACAAAATTACCGTT
1 AATTATTGATAATACCCTCAACTTACAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATT
60765888 TTACCCTCAATTTATAG
66 TTACCCTCAATTTATAG
* ** * * *** * * * *
60765905 AATTACT-ATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATT
1 AATTATTGATAATACCCTCAACTTACAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATT
*
60765969 TTACCCTCGATTTATAG
66 TTACCCTCAATTTATAG
** * * * * *** * * *
60765986 AATTATTG-TTTTGCCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACTATT
1 AATTATTGATAATACCCTCAACTTACAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATT
* * *
60766050 TTATCCTCGATTTACAG
66 TTACCCTCAATTTATAG
* ** ** * * * * ***** *
60766067 AGTTACCG-TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCATT
1 AATTATTGATAATACCCTCAACTTACAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATT
* *
60766131 TTACCCTCGATTTATAA
66 TTACCCTCAATTTATAG
60766148 AATTA
1 AATTA
60766153 CCATTTTACC
Statistics
Matches: 209, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 208 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (82 bp):
AATTATTGATAATACCCTCAACTTACAAAATTACCAAAGTACCCCCAATTTACAAAATTACCATT
TTACCCTCAATTTATAG
Found at i:60766443 original size:27 final size:26
Alignment explanation
Indices: 60766399--60766450 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
60766389 CTCGCTGCAA
60766399 TCTGGTGACCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60766426 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60766451 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60766701 original size:6 final size:6
Alignment explanation
Indices: 60766670--60766803 Score: 121
Period size: 6 Copynumber: 21.8 Consensus size: 6
60766660 TTGCATTCAC
* *
60766670 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
60766719 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG ATTCT-
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
60766767 ATCACCTG ATTCTG ATTCTA ATTCTC ATTTTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
60766804 AGTTCTAATA
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
5 5 0.05
6 87 0.84
7 8 0.08
8 4 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60766705 original size:31 final size:31
Alignment explanation
Indices: 60766670--60766748 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
60766660 TTGCATTCAC
* *
60766670 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
60766701 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
60766732 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
60766749 AATTCTGATT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:60766803 original size:49 final size:49
Alignment explanation
Indices: 60766698--60766803 Score: 167
Period size: 49 Copynumber: 2.2 Consensus size: 49
60766688 TTACCTGATA
* * *
60766698 CTGATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTGATTCTGATTCTAATTCTCATT
*
60766747 CTAATTCTGATTCTGATTCTATCACCTGATTCTGATTCTAATTCTCATT
1 CTGATTCTGATTCTGATTCTATCACCTGATTCTGATTCTAATTCTCATT
*
60766796 TTGATTCT
1 CTGATTCT
60766804 AGTTCTAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (49 bp):
CTGATTCTGATTCTGATTCTATCACCTGATTCTGATTCTAATTCTCATT
Found at i:60777533 original size:21 final size:21
Alignment explanation
Indices: 60777505--60777552 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
60777495 TCAACTTAGA
* * *
60777505 GCGGAGGCAGCAGCGAGGTAG
1 GCGGAGGCAACAACGAGGGAG
*
60777526 GTGGAGGCAACAACGAGGGAG
1 GCGGAGGCAACAACGAGGGAG
60777547 GCGGAG
1 GCGGAG
60777553 CAGAACAGGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.52, T:0.04
Consensus pattern (21 bp):
GCGGAGGCAACAACGAGGGAG
Found at i:60777905 original size:43 final size:43
Alignment explanation
Indices: 60777844--60778170 Score: 429
Period size: 43 Copynumber: 7.6 Consensus size: 43
60777834 AAAAGTACAT
* *
60777844 GTCTCTAGCGACGTTTTTTATAAAAGAGCCGCTAAAGGTCCTG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* * * * * * *
60777887 GTCTCTAGTGGCGATTTTTAAAAAAGCGCCACTAAAAGTACAG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* * *
60777930 GTATTTAGCGGCGTTTTTTTATAAAAGCGCCGCTAAAGGGCCTG
1 GTCTCTAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* * *
60777974 GTCTCTAGCGGCATTTTTTATAAAATCGCCGCTAAAGGTCTTG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* *
60778017 GTCTCTAGCGGAGTTTTTTATAGAAGCGCCGCTAAAGGTCCTG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
*
60778060 GTCTTTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* * * *
60778103 GTCTTTAGCGGTGTTTTTTATAAAAGCGTCGCTAAATGTCCTG
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
* *
60778146 GTCTTTAGCGGCGTTTTTTCTAAAA
1 GTCTCTAGCGGCGTTTTTTATAAAA
60778171 AACACCGCTA
Statistics
Matches: 245, Mismatches: 38, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
43 212 0.87
44 33 0.13
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTG
Found at i:60778136 original size:129 final size:130
Alignment explanation
Indices: 60777844--60778164 Score: 446
Period size: 130 Copynumber: 2.5 Consensus size: 130
60777834 AAAAGTACAT
* * * *
60777844 GTCTCTAGCGACGTTTTTTATAAAAGAGCCGCTAAAGGTCCTGGTCTCTAGTGGCGATTTTTAAA
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTCTAGCGGCGTTTTTTAAA
60777909 AAAGCGCCACTAAAAGTACAGGTATTTAGCGGCGTTTTTTTATAAAAGCGCCGCTAAAGGGCCTG
66 AAAGCGCCACTAAAAGTACAGGTATTTAGCGGCGTTTTTTTATAAAAGCGCCGCTAAAGGGCCTG
* * * * *
60777974 GTCTCTAGCGGCATTTTTTATAAAATCGCCGCTAAAGGTCTTGGTCTCTAGCGGAGTTTTTTATA
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTCTAGCGGCGTTTTTTAAA
* * * * * * *
60778039 GAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAGGTCCTG
66 AAAGCGCCACTAAAAGTACAGGTATTTAGCGGCGTTTTTTTATAAAAGCGCCGCTAAAGGGCCTG
* * * * *
60778103 GTCTTTAGCGGTGTTTTTTATAAAAGCGTCGCTAAATGTCCTGGTCTTTAGCGGCGTTTTTT
1 GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTCTAGCGGCGTTTTTT
60778165 CTAAAAAACA
Statistics
Matches: 166, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
129 82 0.49
130 84 0.51
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (130 bp):
GTCTCTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTCTAGCGGCGTTTTTTAAA
AAAGCGCCACTAAAAGTACAGGTATTTAGCGGCGTTTTTTTATAAAAGCGCCGCTAAAGGGCCTG
Found at i:60781098 original size:43 final size:42
Alignment explanation
Indices: 60781000--60781120 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
60780990 TAGGGTTGCT
* *
60781000 GAGATTACGTTTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * * *
60781042 GAGGCTT-CGTGTAAGACCATACCTGGGCTATTGGCGTCGATAC
1 GA-GATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
*
60781085 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
60781121 TGGTACAGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:60782205 original size:3 final size:3
Alignment explanation
Indices: 60782197--60782237 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
60782187 TTGTTGGATA
60782197 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
60782238 AGCTAAATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:60783169 original size:27 final size:27
Alignment explanation
Indices: 60783128--60783327 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
60783118 TGGATAAATT
* *
60783128 GTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60783155 GTAGAATTACCGAAATACACCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
60783182 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60783209 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
60783236 ATAGAATTACCGAAATACACTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60783263 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
60783290 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60783317 GTAAAATTACC
1 GTAGAATTACC
60783328 ATTTTGCCCC
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:60788456 original size:17 final size:17
Alignment explanation
Indices: 60788415--60788457 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
60788405 AGCAAAAGTT
*
60788415 AGATTCTAATAGTTAGA
1 AGATTCAAATAGTTAGA
*
60788432 AGAATCAAATAGTTATGA
1 AGATTCAAATAGTTA-GA
60788450 A-ATTCAAA
1 AGATTCAAA
60788458 ACTTAAGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 19 0.86
18 3 0.14
ACGTcount: A:0.49, C:0.07, G:0.14, T:0.30
Consensus pattern (17 bp):
AGATTCAAATAGTTAGA
Found at i:60788604 original size:18 final size:18
Alignment explanation
Indices: 60788567--60788605 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
60788557 TTGGAAATCA
*
60788567 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
60788585 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
60788603 AAA
1 AAA
60788606 ATCATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:60794333 original size:46 final size:46
Alignment explanation
Indices: 60794278--60794458 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
60794268 TAGGATGGTT
60794278 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
60794324 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
60794370 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
60794417 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60794459 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:60794439 original size:93 final size:93
Alignment explanation
Indices: 60794280--60794450 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60794270 GGATGGTTGA
* *
60794280 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60794345 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60794373 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60794438 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60794451 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60797445 original size:15 final size:15
Alignment explanation
Indices: 60797406--60797484 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
60797396 GTATCTTGGG
*
60797406 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60797421 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60797436 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
60797450 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60797465 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60797479 TTTCTT
1 TTTCTT
60797485 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60797469 original size:29 final size:29
Alignment explanation
Indices: 60797397--60797483 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
60797387 CATAGTATCG
* * * *
60797397 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
60797427 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
60797456 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
60797484 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:60799915 original size:46 final size:46
Alignment explanation
Indices: 60799860--60800040 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
60799850 TAGGATGGTT
60799860 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
60799906 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
60799952 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
60799999 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60800041 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:60800021 original size:93 final size:93
Alignment explanation
Indices: 60799862--60800032 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60799852 GGATGGTTGA
* *
60799862 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60799927 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60799955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60800020 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60800033 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60804321 original size:20 final size:20
Alignment explanation
Indices: 60804296--60804333 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60804286 GTTTATTCGC
*
60804296 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
60804316 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
60804334 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:60806008 original size:26 final size:28
Alignment explanation
Indices: 60805960--60806041 Score: 150
Period size: 26 Copynumber: 3.0 Consensus size: 28
60805950 GCGTAGATCA
60805960 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60805988 CGAAA-TACCCCT-AAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60806014 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60806042 GATATACCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 19 0.37
27 14 0.27
28 19 0.37
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Done.