Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 218 of 444
Found at i:61228532 original size:40 final size:41
Alignment explanation
Indices: 61228471--61228558 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 41
61228461 GTTTAATAAG
* *
61228471 AAATAAAGTCCATCAAATCAATAATTAACTAAGATGAGTTT
1 AAATAAAGTCCAGCAAATCAATAATTAACTAACATGAGTTT
* * *
61228512 -AATAAAGTCTAGCAACTCAATTATTAACTAACATGAGTTT
1 AAATAAAGTCCAGCAAATCAATAATTAACTAACATGAGTTT
61228552 AAATAAA
1 AAATAAA
61228559 TTAGAGTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 35 0.85
41 6 0.15
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (41 bp):
AAATAAAGTCCAGCAAATCAATAATTAACTAACATGAGTTT
Found at i:61231454 original size:24 final size:24
Alignment explanation
Indices: 61231420--61231476 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
61231410 ACTTCCTCAC
* *
61231420 TTTTTCCTTTCTTTTTTTCAAT-T
1 TTTTTTCTTTCTCTTTTTCAATCT
*
61231443 TTCTTTTCTTTCTCTTTTTCCATCT
1 TT-TTTTCTTTCTCTTTTTCAATCT
61231468 TTTTTTCTT
1 TTTTTTCTT
61231477 GTACTATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 24 0.83
25 3 0.10
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTTCTTTCTCTTTTTCAATCT
Found at i:61234206 original size:40 final size:40
Alignment explanation
Indices: 61234098--61234207 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
61234088 ATTGAATGAT
* * * * *
61234098 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
61234138 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
61234178 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
61234208 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:61234222 original size:40 final size:39
Alignment explanation
Indices: 61234098--61234246 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 39
61234088 ATTGAATGAT
* * * * * * *
61234098 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
61234138 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
61234178 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
61234218 ATCCGGGTTAAG-TCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
61234247 GGGTTACCAT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 15 0.16
40 70 0.77
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:61241101 original size:24 final size:25
Alignment explanation
Indices: 61241069--61241120 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
61241059 GTAAAATAGG
61241069 TAAAATAAATAAAGGATAATTT-GC
1 TAAAATAAATAAAGGATAATTTGGC
61241093 TAAAATAAATAAAGGATAATTTGGC
1 TAAAATAAATAAAGGATAATTTGGC
61241118 TAA
1 TAA
61241121 GACTGAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.54, C:0.04, G:0.13, T:0.29
Consensus pattern (25 bp):
TAAAATAAATAAAGGATAATTTGGC
Found at i:61241748 original size:24 final size:24
Alignment explanation
Indices: 61241721--61241794 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
61241711 GGAAGCTGAA
*
61241721 TTTAAAGGATATATAATGCTCTTC
1 TTTAAAGGATGTATAATGCTCTTC
*
61241745 TTTAAATGATGTA-ACA-GCTC--C
1 TTTAAAGGATGTATA-ATGCTCTTC
61241766 TTT-AAGTGATGTATAATGCTCTTC
1 TTTAAAG-GATGTATAATGCTCTTC
61241790 TTTAA
1 TTTAA
61241795 GTAATGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
20 2 0.05
21 11 0.28
22 5 0.12
23 5 0.12
24 16 0.40
25 1 0.03
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (24 bp):
TTTAAAGGATGTATAATGCTCTTC
Found at i:61241795 original size:24 final size:24
Alignment explanation
Indices: 61241732--61241802 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
61241722 TTAAAGGATA
*
61241732 TATAATGCTCTTCTTTAAATGATG
1 TATAATGCTCTTCTTTAAGTGATG
61241756 TA-ACA-GCTC--CTTTAAGTGATG
1 TATA-ATGCTCTTCTTTAAGTGATG
*
61241777 TATAATGCTCTTCTTTAAGTAATG
1 TATAATGCTCTTCTTTAAGTGATG
61241801 TA
1 TA
61241803 ACAGCCACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 14 0.35
22 5 0.12
23 5 0.12
24 16 0.40
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (24 bp):
TATAATGCTCTTCTTTAAGTGATG
Found at i:61249780 original size:29 final size:29
Alignment explanation
Indices: 61249748--61249820 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
61249738 TGAAAAGTAT
* * *
61249748 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
61249777 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
61249806 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
61249821 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:61257703 original size:29 final size:29
Alignment explanation
Indices: 61257671--61257743 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
61257661 TGAAAAGTAT
* * *
61257671 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
61257700 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
61257729 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
61257744 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:61270098 original size:28 final size:28
Alignment explanation
Indices: 61270066--61270120 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
61270056 CGTAGATCAC
61270066 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
61270094 GAAATTACCCCTAAAGAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
61270121 CGATATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:61274364 original size:28 final size:28
Alignment explanation
Indices: 61274331--61274399 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
61274321 GCGTAGATCA
61274331 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
61274359 TGAAATTACTCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
61274387 CGATA-TACCCCTA
1 CGAAATTACCCCTA
61274400 GAGTTTTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:61276762 original size:40 final size:41
Alignment explanation
Indices: 61276701--61276788 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 41
61276691 AGTTTAATAA
61276701 AAATAAAGTCCAAAAAATCAATAATTAACTAAGATGAGTTT
1 AAATAAAGTCCAAAAAATCAATAATTAACTAAGATGAGTTT
** * * *
61276742 -AATAAAGTCCAGTAACTCAATTATTAACTAAGATTAGTTT
1 AAATAAAGTCCAAAAAATCAATAATTAACTAAGATGAGTTT
61276782 AAATAAA
1 AAATAAA
61276789 TTAAAGTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 35 0.85
41 6 0.15
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (41 bp):
AAATAAAGTCCAAAAAATCAATAATTAACTAAGATGAGTTT
Found at i:61280985 original size:22 final size:22
Alignment explanation
Indices: 61280957--61281020 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
61280947 GCAAATACGT
*
61280957 TTGGCACATAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * *
61280979 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
61281001 TTGGCACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
61281021 GAATAATTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:61282415 original size:28 final size:28
Alignment explanation
Indices: 61282369--61282437 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
61282359 TTTAAAACCC
*
61282369 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61282396 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61282424 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
61282438 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:61284088 original size:20 final size:20
Alignment explanation
Indices: 61284065--61284102 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61284055 CACATCCAAA
*
61284065 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
61284085 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
61284103 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:61290419 original size:28 final size:28
Alignment explanation
Indices: 61290373--61290441 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
61290363 TTTAAAACCC
*
61290373 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61290400 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
61290428 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
61290442 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:61292744 original size:29 final size:29
Alignment explanation
Indices: 61292711--61292842 Score: 126
Period size: 29 Copynumber: 4.6 Consensus size: 29
61292701 GTGACGAGAT
61292711 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
61292740 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
* ** * ***
61292769 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* * *
61292798 TGGCACTATGTGTGCGAGCT-TAAATCACA
1 TGGCACTAAGTGTGCGAGCTGGAAAT-ATA
61292827 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61292843 CAATCGAGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 2 0.02
29 82 0.96
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:61296062 original size:39 final size:39
Alignment explanation
Indices: 61296019--61296113 Score: 129
Period size: 39 Copynumber: 2.4 Consensus size: 39
61296009 ACCAGCTCGA
* **
61296019 AGCCTGCGGGA-CTTTAGCCCGGATGTAATTCCAGCATAT
1 AGCCTGC-GGACCTTAAGCCCGGACATAATTCCAGCATAT
*
61296058 AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
1 AGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCATAT
*
61296097 AGCCTGTGGACCTTAAG
1 AGCCTGCGGACCTTAAG
61296114 TCCTGATATA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 3 0.06
39 47 0.94
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCATAT
Found at i:61296114 original size:39 final size:39
Alignment explanation
Indices: 61296044--61296126 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
61296034 AGCCCGGATG
61296044 TAATTCCAGCATATAGCCTGCGGACCTTAAGTCCGGACA
1 TAATTCCAGCATATAGCCTGCGGACCTTAAGTCCGGACA
* * *
61296083 TAATTCCAGCATATAGCCTGTGGACCTTAAGTCCTGATA
1 TAATTCCAGCATATAGCCTGCGGACCTTAAGTCCGGACA
61296122 TAATT
1 TAATT
61296127 TATCACTGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (39 bp):
TAATTCCAGCATATAGCCTGCGGACCTTAAGTCCGGACA
Found at i:61298478 original size:41 final size:41
Alignment explanation
Indices: 61298416--61298538 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
61298406 TAAAAGCCAC
* *
61298416 CGGTAGATCCACGGTCGTCAAGCAACCATGTGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGTGATCCTCAAT
* *
61298457 CGGTGGATCCACGATCATCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGTGATCCTCAAT
* *
61298498 CGGTGGATCCACGGTTGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGTGATCCTCAAT
61298539 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGTGATCCTCAAT
Found at i:61298823 original size:18 final size:18
Alignment explanation
Indices: 61298796--61298832 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
61298786 TTGGTAAATC
61298796 TACAAACCAAGGGTATTT
1 TACAAACCAAGGGTATTT
* *
61298814 TACAAGCCAATGGTATTT
1 TACAAACCAAGGGTATTT
61298832 T
1 T
61298833 TGTAATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (18 bp):
TACAAACCAAGGGTATTT
Found at i:61298923 original size:54 final size:54
Alignment explanation
Indices: 61298825--61299140 Score: 287
Period size: 54 Copynumber: 5.8 Consensus size: 54
61298815 ACAAGCCAAT
* ** * ** *
61298825 GGTATTTTTGTAATTTTTGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGG
1 GGTATTTCTGTAATTTTACAAA-TCAAGGGTATTTCGGTAATTTTACAAATCAGG
*
61298880 GGTATTTCTGTAATTTTCCAAATCAAGGGTATTTCGGTAATTTT-CTAAATCAGG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTAC-AAATCAGG
* * * * * *
61298934 GGTATTTCTGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAGT-TGAA
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAG-G
* ** * * * *
61298988 GGTATTTCAGTAATTTTACAGGTCGAGGATATTTCGGTAATTTCACAAATCAAG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAGG
* * * * * * *
61299042 AGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAGG
* ** *
61299096 GGTATTT-TGGAAATTTTACAAATTGAGGGTATTTTGGTAATTTTA
1 GGTATTTCT-GTAATTTTACAAATCAAGGGTATTTCGGTAATTTTA
61299141 TAAACCAATG
Statistics
Matches: 216, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.00
54 195 0.90
55 20 0.09
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAGG
Found at i:61298964 original size:81 final size:81
Alignment explanation
Indices: 61298825--61299139 Score: 264
Period size: 81 Copynumber: 3.9 Consensus size: 81
61298815 ACAAGCCAAT
** ** * ** * *
61298825 GGTATTTTTGTAATTTTTGAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT-TAGGGGTATTTCT
1 GGTATTTCGGTAATTTTACAAA-TCAGGGGTATTTCTGTAATTTTACAAATCGA-GGGTATTTCA
61298889 GTAATTTTCCAAATCAAG
64 GTAATTTTCCAAATCAAG
*
61298907 GGTATTTCGGTAATTTT-CTAAATCAGGGGTATTTCTGTAATTTTACAAGTCGAGGGTATTTCAG
1 GGTATTTCGGTAATTTTAC-AAATCAGGGGTATTTCTGTAATTTTACAAATCGAGGGTATTTCAG
* * *
61298971 TAATTTTACAAGTTGAA-
65 TAATTTTCCAA-ATCAAG
* ** * * * * *
61298988 GGTATTTCAGTAATTTTACAGGTC-GAGGATATTTCGGTAATTTCACAAATCAAGAGTATTTCAG
1 GGTATTTCGGTAATTTTACAAATCAG-GGGTATTTCTGTAATTTTACAAATCGAGGGTATTTCAG
* *
61299052 TAA-TTTCACAAATTAGG
65 TAATTTTC-CAAATCAAG
* * * * **
61299069 GGTATTTTGGTAATTTTACAAACCAGGGGTATTT-TGGAAATTTTACAAATTGAGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTCT-GTAATTTTACAAATCGAGGGTATTTCAG
61299133 TAATTTT
65 TAATTTT
61299140 ATAAACCAAT
Statistics
Matches: 184, Mismatches: 39, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
80 6 0.03
81 151 0.82
82 27 0.15
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTCTGTAATTTTACAAATCGAGGGTATTTCAGT
AATTTTCCAAATCAAG
Found at i:61298978 original size:27 final size:27
Alignment explanation
Indices: 61298851--61299140 Score: 239
Period size: 27 Copynumber: 10.7 Consensus size: 27
61298841 TTGAAAGTCA
* ** *
61298851 AGGGTATTTCTGTAATTTTGTAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61298877 AGGGGTATTTCTGTAATTTTCCAAATCA
1 A-GGGTATTTCGGTAATTTTACAAATCG
61298905 AGGGTATTTCGGTAATTTT-CTAAATC-
1 AGGGTATTTCGGTAATTTTAC-AAATCG
* *
61298931 AGGGGTATTTCTGTAATTTTACAAGTCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
61298959 AGGGTATTTCAGTAATTTTACAAGTTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * **
61298986 AAGGTATTTCAGTAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
61299013 AGGATATTTCGGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
61299040 AGAGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
61299066 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
61299093 AGGGGTATTTTGGAAATTTTACAAATTG
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
61299121 AGGGTATTTTGGTAATTTTA
1 AGGGTATTTCGGTAATTTTA
61299141 TAAACCAATG
Statistics
Matches: 224, Mismatches: 31, Indels: 17
0.82 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 216 0.96
28 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:61299153 original size:27 final size:27
Alignment explanation
Indices: 61298810--61299164 Score: 180
Period size: 27 Copynumber: 13.1 Consensus size: 27
61298800 AACCAAGGGT
* * *
61298810 ATTTTACAAGCCAATGGTATTTTTGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
** *
61298837 ATTTTTGAAAGTCAAGGGTATTTCT-GTA
1 ATTTTACAAA-CCAAGGGTATTT-TGGTA
** ** *
61298865 ATTTTGTAAATTAGGGGTATTTCT-GTA
1 ATTTTACAAACCAAGGGTATTT-TGGTA
* * *
61298892 ATTTTCCAAATCAAGGGTATTTCGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* *
61298919 ATTTT-CTAAATCAGGGGTATTTCT-GTA
1 ATTTTAC-AAACCAAGGGTATTT-TGGTA
** * **
61298946 ATTTTACAAGTCGAGGGTATTTCAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*** **
61298973 ATTTTACAAGTTGAA-GGTATTTCAGTA
1 ATTTTACAA-ACCAAGGGTATTTTGGTA
*** * * *
61299000 ATTTTACAGGTCGAGGATATTTCGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * * **
61299027 ATTTCACAAATCAAGAGTATTTCAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* ** *
61299054 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* *
61299081 ATTTTACAAACCAGGGGTATTTTGGAA
1 ATTTTACAAACCAAGGGTATTTTGGTA
***
61299108 ATTTTACAAATTGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
61299135 ATTTTATAAACCAATGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
61299162 ATT
1 ATT
61299165 CTTCCCTACA
Statistics
Matches: 263, Mismatches: 56, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 3 0.01
27 235 0.89
28 24 0.09
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:61299292 original size:9 final size:8
Alignment explanation
Indices: 61299262--61299292 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
61299252 TTTATCCACT
61299262 TGGGCCCA
1 TGGGCCCA
61299270 TGGGCCCA
1 TGGGCCCA
61299278 TGGGCCCA
1 TGGGCCCA
61299286 TTGGGCC
1 -TGGGCC
61299293 TACATGGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.10, C:0.35, G:0.39, T:0.16
Consensus pattern (8 bp):
TGGGCCCA
Found at i:61303332 original size:18 final size:18
Alignment explanation
Indices: 61303307--61303356 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
61303297 TAACAGTCGA
61303307 AGTAATCAGTGCAGTAACC
1 AGTAATCAGTGCAGTAA-C
* *
61303326 A-TGATCAATGCAGTAAC
1 AGTAATCAGTGCAGTAAC
61303343 AGTAATCAGTGCAG
1 AGTAATCAGTGCAG
61303357 AATGCAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 2 0.08
18 23 0.88
19 1 0.04
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (18 bp):
AGTAATCAGTGCAGTAAC
Found at i:61303799 original size:27 final size:27
Alignment explanation
Indices: 61303749--61303868 Score: 118
Period size: 27 Copynumber: 4.4 Consensus size: 27
61303739 ATAGAGCAAA
*
61303749 TCAGTCATTTTACCTTACTA-GGGTATT
1 TCAGTCATTTTACCCTAC-AGGGGTATT
* *
61303776 ACAGTCATTTGACCCTACAGGGGTATT
1 TCAGTCATTTTACCCTACAGGGGTATT
** *
61303803 TCAGTCATTCCACCCTA-TGGGAGTATT
1 TCAGTCATTTTACCCTACAGGG-GTATT
* * *
61303830 TCGGTCATTTTACCCTATAAGGGTATT
1 TCAGTCATTTTACCCTACAGGGGTATT
*
61303857 TCCGTCATTTTA
1 TCAGTCATTTTA
61303869 TCACATAAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.05
27 71 0.92
28 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (27 bp):
TCAGTCATTTTACCCTACAGGGGTATT
Found at i:61303876 original size:27 final size:27
Alignment explanation
Indices: 61303825--61303879 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
61303815 CCCTATGGGA
* *
61303825 GTATTTCGGTCATTTTACCCTATAAGG
1 GTATTTCCGTCATTTTACACTATAAGG
61303852 GTATTTCCGTCATTTTATCAC-ATAAGG
1 GTATTTCCGTCATTTTA-CACTATAAGG
61303879 G
1 G
61303880 AAAAATTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (27 bp):
GTATTTCCGTCATTTTACACTATAAGG
Found at i:61303891 original size:27 final size:27
Alignment explanation
Indices: 61303859--61304007 Score: 181
Period size: 27 Copynumber: 5.5 Consensus size: 27
61303849 AGGGTATTTC
*
61303859 CGTCATTTTATCACATAAGGGAAAAAT
1 CGTCATTTTATCACATAAGGGCAAAAT
** *
61303886 TTTCATTTTATCACATGAGGGCAAAAT
1 CGTCATTTTATCACATAAGGGCAAAAT
* * *** * *
61303913 CATAATTTTATCATGGAATGGTAAAAT
1 CGTCATTTTATCACATAAGGGCAAAAT
*
61303940 CGTCATTTTATCACATGAGGGCAAAAT
1 CGTCATTTTATCACATAAGGGCAAAAT
61303967 CGTCATTTTATCACATAAGGGCAAAAT
1 CGTCATTTTATCACATAAGGGCAAAAT
*
61303994 CGACATTTTATCAC
1 CGTCATTTTATCAC
61304008 TACATAAGGG
Statistics
Matches: 99, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (27 bp):
CGTCATTTTATCACATAAGGGCAAAAT
Found at i:61304015 original size:30 final size:27
Alignment explanation
Indices: 61303862--61304037 Score: 156
Period size: 27 Copynumber: 6.4 Consensus size: 27
61303852 GTATTTCCGT
* ***
61303862 CATTTTATCACATAAGGGAAAAATTTT
1 CATTTTATCACATAAGGGCAAAATCGA
*
61303889 CATTTTATCACATGAGGGCAAAATC-A
1 CATTTTATCACATAAGGGCAAAATCGA
* *** * * *
61303915 TAATTTTATCATGGAATGGTAAAATCGT
1 -CATTTTATCACATAAGGGCAAAATCGA
* *
61303943 CATTTTATCACATGAGGGCAAAATCGT
1 CATTTTATCACATAAGGGCAAAATCGA
61303970 CATTTTATCACATAAGGGCAAAATCGA
1 CATTTTATCACATAAGGGCAAAATCGA
* **
61303997 CATTTTATCACTACATAAGGGAAAAATTAA
1 CATTTTAT--C-ACATAAGGGCAAAATCGA
61304027 CATTTTATCAC
1 CATTTTATCAC
61304038 TTGAGGGTTC
Statistics
Matches: 120, Mismatches: 24, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
27 95 0.79
28 1 0.01
29 1 0.01
30 23 0.19
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (27 bp):
CATTTTATCACATAAGGGCAAAATCGA
Found at i:61304038 original size:30 final size:30
Alignment explanation
Indices: 61303979--61304038 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
61303969 TCATTTTATC
* *
61303979 ACATAAGGGCAAAATCGACATTTTATCACT
1 ACATAAGGGAAAAATCAACATTTTATCACT
*
61304009 ACATAAGGGAAAAATTAACATTTTATCACT
1 ACATAAGGGAAAAATCAACATTTTATCACT
61304039 TGAGGGTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (30 bp):
ACATAAGGGAAAAATCAACATTTTATCACT
Found at i:61305509 original size:12 final size:11
Alignment explanation
Indices: 61305472--61305509 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
61305462 TAAACCCATG
61305472 ACTTCCCAGAC
1 ACTTCCCAGAC
61305483 ACTTCCCAGAC
1 ACTTCCCAGAC
61305494 ACTTCCCAGCAC
1 ACTTCCCAG-AC
61305506 ACTT
1 ACTT
61305510 AACCACTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 20 0.77
12 6 0.23
ACGTcount: A:0.26, C:0.45, G:0.08, T:0.21
Consensus pattern (11 bp):
ACTTCCCAGAC
Found at i:61309156 original size:29 final size:29
Alignment explanation
Indices: 61309122--61309224 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
61309112 TAATCAGCCG
** *
61309122 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
61309151 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
61309180 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
61309209 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61309225 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:61314477 original size:40 final size:40
Alignment explanation
Indices: 61314394--61314585 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
61314384 TTGAATGATG
* * * *
61314394 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * *
61314434 TCCGGACTATGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
61314474 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
61314513 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** *
61314554 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
61314586 CGTTATATCC
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
39 34 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:61314534 original size:79 final size:81
Alignment explanation
Indices: 61314394--61314585 Score: 223
Period size: 79 Copynumber: 2.4 Consensus size: 81
61314384 TTGAATGATG
* * * *
61314394 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTATGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
61314458 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
61314474 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
61314537 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** * *
61314554 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
61314586 CGTTATATCC
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 39 0.41
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:61314609 original size:79 final size:79
Alignment explanation
Indices: 61314446--61314611 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
61314436 CGGACTATGA
* * *
61314446 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTCGAGCGAGTCACTA
* *
61314511 AACCCGGGTTAAGT
66 AACCCGGGATAAAT
* * ** **
61314525 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-CCCGAAGGCATTCGAGCGAGTCAC
* *
61314589 TATATCC-GGATAAAT
64 TAAACCCGGGATAAAT
61314604 TCCGAAGG
1 TCCGAAGG
61314612 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTCGAGCGAGTCACTA
AACCCGGGATAAAT
Found at i:61316918 original size:46 final size:46
Alignment explanation
Indices: 61316868--61317043 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61316858 TGGTTGAGCA
61316868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61316914 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61316959 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61317007 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61317044 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61317024 original size:93 final size:93
Alignment explanation
Indices: 61316865--61317036 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61316855 GGATGGTTGA
* *
61316865 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61316930 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61316958 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61317023 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61317037 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61324028 original size:46 final size:46
Alignment explanation
Indices: 61323978--61324153 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61323968 TGGTTGAGCA
61323978 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61324024 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61324069 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61324117 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61324154 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61324134 original size:93 final size:93
Alignment explanation
Indices: 61323975--61324146 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61323965 GGATGGTTGA
* *
61323975 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61324040 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61324068 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61324133 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61324147 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61331966 original size:39 final size:39
Alignment explanation
Indices: 61331867--61332057 Score: 181
Period size: 40 Copynumber: 4.8 Consensus size: 39
61331857 TGAATGATGT
* * * *
61331867 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
61331907 CCGGACTAAGAT-CCGAAGGCATTCGTGAGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
61331946 TCCGGGGTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
61331985 CCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** *
61332026 CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
61332058 CGTTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.27
40 83 0.67
41 8 0.06
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:61338584 original size:71 final size:71
Alignment explanation
Indices: 61338495--61338658 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
61338485 CGATTTGTCT
*
61338495 CGTAACTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61338560 CTTTCA
66 CTTTCA
61338566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61338631 CTTTCA
66 CTTTCA
61338637 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61338659 ATACATCTCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61340756 original size:29 final size:29
Alignment explanation
Indices: 61340722--61340824 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
61340712 TAATCAGCCG
** *
61340722 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
61340751 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
61340780 CGCGCACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
61340809 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61340825 ATCTCTCAAC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 3 0.04
29 64 0.96
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:61342841 original size:23 final size:22
Alignment explanation
Indices: 61342766--61342841 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
61342756 CTAATGAACA
* *
61342766 GTAAGCTCTATTGAGCTAAAATG
1 GTAAGCTCTATCGAGCTGAAA-G
*
61342789 GTATGCTCTATCGAGCTGAATA-
1 GTAAGCTCTATCGAGCTGAA-AG
61342811 GTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-CGAGCTGAAA-G
61342834 GTAAGCTC
1 GTAAGCTC
61342842 CAATAAGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 3 0.07
22 16 0.36
23 25 0.56
24 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (22 bp):
GTAAGCTCTATCGAGCTGAAAG
Found at i:61347217 original size:24 final size:24
Alignment explanation
Indices: 61347190--61347251 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
61347180 TGGAGTTTCT
61347190 CGATATGGTTCTTTGTA-AACTTCC
1 CGATATGGTTCTTTG-AGAACTTCC
*
61347214 CGATAAGGTTCTTTGAGAACTTCC
1 CGATATGGTTCTTTGAGAACTTCC
* *
61347238 TGATTATGGCTCTT
1 CGA-TATGGTTCTT
61347252 ATAAGCTACA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.03
24 23 0.72
25 8 0.25
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (24 bp):
CGATATGGTTCTTTGAGAACTTCC
Found at i:61349423 original size:77 final size:79
Alignment explanation
Indices: 61349335--61349482 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 79
61349325 ATCACGATTT
* *
61349335 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTTGCA-C-GAA-TGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAA-TTGCAGCAGAATTGCCTTCGGGGCTTAGCC
61349397 CGGATATAGCTACTA
65 CGGATATAGCTACTA
* * * * *
61349412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCAGCATAATTGTCTTCGGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCCC
61349477 GGATAT
66 GGATAT
61349483 CATTCAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
76 4 0.07
77 32 0.52
78 2 0.03
79 23 0.38
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCCC
GGATATAGCTACTA
Found at i:61349478 original size:39 final size:40
Alignment explanation
Indices: 61349303--61349482 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
61349293 CCGCACCAAG
* * * * * * * *
61349303 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
*
61349343 GCCTTCGGGTCTTAGCCCGGATA-AA--ACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
61349380 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
61349420 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
61349459 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
61349483 CATTCAATTT
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
37 31 0.26
38 3 0.03
39 32 0.27
40 54 0.45
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:61357500 original size:40 final size:40
Alignment explanation
Indices: 61357268--61357487 Score: 342
Period size: 39 Copynumber: 5.6 Consensus size: 40
61357258 CCAGCATGAT
* * *
61357268 TGCTCTTCGGGAC-TAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
61357307 TGCTCTTCGGAACTTAGT-CGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
61357346 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* **
61357385 TGCTC-CCATAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
61357424 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
61357464 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
61357488 TAACCACAAG
Statistics
Matches: 167, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
38 27 0.16
39 72 0.43
40 68 0.41
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:61357550 original size:118 final size:116
Alignment explanation
Indices: 61357284--61357600 Score: 302
Period size: 118 Copynumber: 2.7 Consensus size: 116
61357274 TCGGGACTAG
* * *
61357284 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGT-CGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * * * * *
61357348 CTCCTCGGAACTTAGTCCGGATACATCACTAGCAGAATGCTCCCATAACTTAG
66 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACAAT-CTCCCATAACTTAA
* * *
61357401 TCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * **
61357466 CTCTTCGGAACTTAGCCGGATATAACCACAAGCACAAT-TGCCTTGGGTCTTAA
66 CTCTTCGGAACTTAGCCGGATA-AACCACAAGCACAATCTCCCAT--AACTTAA
* * ** * * **
61357519 CCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAA
1 CCCGGATACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGA
*
61357582 ATGC-CTTCGGGACTTAGCC
63 ATGCTCTTCGGAACTTAGCC
61357601 CGGGTATCAT
Statistics
Matches: 169, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
116 4 0.02
117 46 0.27
118 93 0.55
119 25 0.15
120 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (116 bp):
CCCGGATACAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
CTCTTCGGAACTTAGCCGGATAAACCACAAGCACAATCTCCCATAACTTAA
Found at i:61357584 original size:40 final size:39
Alignment explanation
Indices: 61357272--61357603 Score: 237
Period size: 40 Copynumber: 8.5 Consensus size: 39
61357262 CATGATTGCT
** *
61357272 CTTCGGGAC-TAGCCCGGATGCATCACTAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* * * *
61357310 TCTTCGGAACTTAG-TCGGATACATCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* * * * *
61357349 TCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAATG-
1 -CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* *** * * *
61357387 CTCCCATAACTTAGTCCGGATACATCACTAGCACGAATGC
1 CT-TCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* * * *
61357427 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* * * *
61357467 TCTTCGGAACTTAG-CCGGATATAACCACAAGCACAATTGC
1 -CTTCGGGACTTAGCCCGGATAT-ATCACTAGCACAAATGC
* * * *
61357507 CTT-GGGTCTTAACCCGGGTATAACAACTCA-CACAAATGC
1 CTTCGGGACTTAGCCCGGATATATC-ACT-AGCACAAATGC
* *
61357546 CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATA-TCACTAGCACAAATGC
61357586 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
61357604 GTATCATTCA
Statistics
Matches: 251, Mismatches: 29, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
37 1 0.00
38 35 0.14
39 85 0.34
40 127 0.51
41 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
Found at i:61359644 original size:49 final size:49
Alignment explanation
Indices: 61359575--61359935 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
61359565 TTTACCACAT
*
61359575 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
61359624 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
61359673 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
61359722 ATATACATATACTTTCACATTCATCCCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
61359771 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
61359820 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
61359869 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
61359918 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
61359936 GAATCTTGAT
Statistics
Matches: 295, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 295 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:61365759 original size:40 final size:40
Alignment explanation
Indices: 61365714--61365881 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
61365704 CGGAATACAA
* *
61365714 CCGGATATAACCACACGTACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
61365754 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
61365794 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
61365834 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
61365874 CCGGATAT
1 CCGGATAT
61365882 CATTCAATTG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 107 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:61365854 original size:80 final size:80
Alignment explanation
Indices: 61365714--61365881 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
61365704 CGGAATACAA
* * * *
61365714 CCGGATATAACCACACGTACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
61365779 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
61365794 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
61365857 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
61365874 CCGGATAT
1 CCGGATAT
61365882 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:61379283 original size:27 final size:27
Alignment explanation
Indices: 61379253--61379331 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
61379243 CTCAACGAGT
61379253 TCGGATGCCTACTTACATCTCACAAAC
1 TCGGATGCCTACTTACATCTCACAAAC
* **
61379280 TCGGA---CT-C--A-A-CTCAACGAGT
1 TCGGATGCCTACTTACATCTC-ACAAAC
61379300 TCGGATGCCTACTTACATCTCACAAAC
1 TCGGATGCCTACTTACATCTCACAAAC
61379327 TCGGA
1 TCGGA
61379332 CTCAACTCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 18
0.61 0.10 0.30
Matches are distributed among these distances:
19 3 0.08
20 9 0.24
21 1 0.03
23 3 0.08
24 3 0.08
26 1 0.03
27 14 0.38
28 3 0.08
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (27 bp):
TCGGATGCCTACTTACATCTCACAAAC
Found at i:61379293 original size:47 final size:47
Alignment explanation
Indices: 61379230--61379349 Score: 240
Period size: 47 Copynumber: 2.6 Consensus size: 47
61379220 TCCATAAATG
61379230 AACTCGGACTCAACTCAACGAGTTCGGATGCCTACTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTACTTACATCTCACA
61379277 AACTCGGACTCAACTCAACGAGTTCGGATGCCTACTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTACTTACATCTCACA
61379324 AACTCGGACTCAACTCAACGAGTTCG
1 AACTCGGACTCAACTCAACGAGTTCG
61379350 AACATTTGCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.23
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTACTTACATCTCACA
Found at i:61382710 original size:27 final size:27
Alignment explanation
Indices: 61382674--61382837 Score: 129
Period size: 27 Copynumber: 6.1 Consensus size: 27
61382664 ATATCCTCAG
*
61382674 TTGTAAAATTA-CCAAAGTACCCTCGGT
1 TTGTAAAATTATCCAAA-TACCCTCGAT
* * *
61382701 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCCAAATACCCTCGAT
*
61382728 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTATCCAAATACCCTCGA-T
* ** * *
61382755 TTGCAAAATTATTGAAATACCCTCAAC
1 TTGTAAAATTATCCAAATACCCTCGAT
*
61382782 ATGTAAAATTAT-CAAAGTACCCTCGAT
1 TTGTAAAATTATCCAAA-TACCCTCGAT
** **
61382809 TTACAAAATTA-CCATTTTACCCTCGAT
1 TTGTAAAATTATCCA-AATACCCTCGAT
61382836 TT
1 TT
61382838 ACAGAATTAC
Statistics
Matches: 111, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.04
27 101 0.91
28 6 0.05
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTATCCAAATACCCTCGAT
Found at i:61382763 original size:54 final size:52
Alignment explanation
Indices: 61382662--61382821 Score: 169
Period size: 54 Copynumber: 3.0 Consensus size: 52
61382652 CAAATTAATG
* * *
61382662 AAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCC
1 AAATATCCTCACTTGTAAAATTATCAAAGTACCCTC-GTTTACAAAATTACCC
* * ***
61382715 AAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTCAGTTTGCAAAATTATTG
1 AAATATCCTC-ACTTGTAAAATTATC-AAAGTACCCTC-GTTTACAAAATTACCC
* *
61382769 AAATACCCTCAACATGTAAAATTATCAAAGTACCCTCGATTTACAAAATTACC
1 AAATATCCTC-ACTTGTAAAATTATCAAAGTACCCTCG-TTTACAAAATTACC
61382822 ATTTTACCCT
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
53 14 0.16
54 71 0.81
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (52 bp):
AAATATCCTCACTTGTAAAATTATCAAAGTACCCTCGTTTACAAAATTACCC
Found at i:61382838 original size:27 final size:27
Alignment explanation
Indices: 61382799--61382971 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
61382789 ATTATCAAAG
*
61382799 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
61382826 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
61382853 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
61382880 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
61382907 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
61382934 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
61382961 TACCCTCGATT
1 TACCCTCGATT
61382972 GTGAAATTAC
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:61382846 original size:81 final size:81
Alignment explanation
Indices: 61382745--61382929 Score: 185
Period size: 81 Copynumber: 2.3 Consensus size: 81
61382735 ATTATCGAAA
* * *
61382745 TACCCTC-AGTTTGCAAAATTATTGAAATACCCTCAACATGTAAAATTA-TCAAAGTACCCTCGA
1 TACCCTCGA-TTTACAAAATTACTGAAATACCCTCAACATATAAAATTACT-AAAGTACCCTCGA
61382808 TTTACAAAATTACCATTT
64 TTTACAAAATTACCATTT
* *** * ** ***
61382826 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCAACATATAAAATTACTAAAGTACCCTCGATT
* * *
61382891 TACAGAGTTACTATTT
66 TACAAAATTACCATTT
*
61382907 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAAAATTACT
61382930 ATTTTACCCT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
81 82 0.98
82 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCAACATATAAAATTACTAAAGTACCCTCGATT
TACAAAATTACCATTT
Found at i:61382993 original size:27 final size:26
Alignment explanation
Indices: 61382963--61383045 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
61382953 TACCGTTTTA
*
61382963 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
61382990 CCCT-ATAGGGTAGAATTACCAAAACAC
1 CCCTGATTGTG-A-AATTACCAAAATAC
* *
61383017 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
61383044 CC
1 CC
61383046 TTGTAGGGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 35 0.81
28 1 0.02
29 2 0.05
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:61383062 original size:27 final size:27
Alignment explanation
Indices: 61382984--61383385 Score: 488
Period size: 27 Copynumber: 15.0 Consensus size: 27
61382974 GAAATTACTA
* *
61382984 AAATACCCCTATAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* ** * *
61383011 AAACACCCCTAGT-TTGTAAAATTACCA
1 AAATACCCCT-GTAGGGTAGAATTACCG
* * **
61383038 AAATACCCTTGTAGGGTAGATTTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383065 AAATA-CCCTAGTAAGGTAGAATTACCG
1 AAATACCCCT-GTAGGGTAGAATTACCG
*
61383092 -AATACCTCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383118 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
61383145 AAATACCTCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383172 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383199 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383226 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383253 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
61383280 CAATACCCCTATGGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
61383307 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61383334 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
61383361 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
61383386 ATTTTGCCCC
Statistics
Matches: 320, Mismatches: 50, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
26 41 0.13
27 278 0.87
28 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:61383664 original size:27 final size:26
Alignment explanation
Indices: 61383626--61383677 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
61383616 CTCGCTGCAA
*
61383626 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
61383653 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
61383678 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:61383715 original size:67 final size:67
Alignment explanation
Indices: 61383607--61383827 Score: 424
Period size: 67 Copynumber: 3.3 Consensus size: 67
61383597 GAGGAAGCGT
61383607 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
61383672 TA
66 TA
61383674 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
61383739 TA
66 TA
* *
61383741 TTTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTTTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
61383806 TA
66 TA
61383808 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
61383828 TTCTGTGGTG
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 151 1.00
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:61383939 original size:6 final size:6
Alignment explanation
Indices: 61383930--61384107 Score: 159
Period size: 6 Copynumber: 28.8 Consensus size: 6
61383920 TTGCATTCAC
* *
61383930 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
61383980 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
61384029 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
61384079 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
61384108 AGTTATGATA
Statistics
Matches: 141, Mismatches: 16, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.06
6 112 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:61383961 original size:25 final size:25
Alignment explanation
Indices: 61383933--61383997 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
61383923 CATTCACATT
*
61383933 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
61383958 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
61383983 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
61383998 ATTCTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:61384006 original size:62 final size:62
Alignment explanation
Indices: 61383931--61384096 Score: 305
Period size: 62 Copynumber: 2.7 Consensus size: 62
61383921 TGCATTCACA
61383931 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
61383993 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * *
61384055 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
61384097 ATTCTGATTC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 101 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:61384025 original size:25 final size:25
Alignment explanation
Indices: 61383995--61384059 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
61383985 GATTCTGGTT
*
61383995 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
61384020 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
61384045 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
61384060 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:61384061 original size:37 final size:37
Alignment explanation
Indices: 61383931--61384112 Score: 143
Period size: 37 Copynumber: 4.5 Consensus size: 37
61383921 TGCATTCACA
* *
61383931 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
*
61383968 TTCTGTTACCTAATTCTGATTCTGGTT--CTGATTCTGATTCTGTTA
1 TTCTG-------ATTCTGATTCT-GTTACCTAATTCTGATTCTG--A
*
61384013 CCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 --T--T-CTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
* * *
61384055 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
61384092 TTCTGATTCTGATTCTAGTTA
1 TTCTGATTCTGATTCT-GTTA
61384113 TGATAATATT
Statistics
Matches: 118, Mismatches: 9, Indels: 35
0.73 0.06 0.22
Matches are distributed among these distances:
37 51 0.43
38 4 0.03
40 1 0.01
42 3 0.03
43 25 0.21
44 25 0.21
45 4 0.03
47 1 0.01
49 1 0.01
50 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
TTCTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
Found at i:61386096 original size:26 final size:26
Alignment explanation
Indices: 61386067--61386218 Score: 96
Period size: 27 Copynumber: 5.7 Consensus size: 26
61386057 TTAGTTTACC
*
61386067 AAATTACTGAAATATCCTCAGTTGTA
1 AAATTACTGAAATACCCTCAGTTGTA
* * *
61386093 AAATTAC-CAAAGTACCCTCGGTTTATA
1 AAATTACTGAAA-TACCCTCAG-TTGTA
** * *
61386120 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTC-AGTTGTA
*
61386147 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAG-TTGTA
* **
61386174 AAA-TATTGAAATACCCTCGACATGTA
1 AAATTACTGAAATACCCTC-AGTTGTA
*
61386200 AAATTA-TCAAAGTACCCTC
1 AAATTACTGAAA-TACCCTC
61386219 GATTTACAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
25 3 0.03
26 38 0.38
27 54 0.55
28 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATTACTGAAATACCCTCAGTTGTA
Found at i:61386125 original size:27 final size:27
Alignment explanation
Indices: 61386088--61386250 Score: 129
Period size: 27 Copynumber: 6.1 Consensus size: 27
61386078 ATATCCTCAG
*
61386088 TTGTAAAATTA-CCAAAGTACCCTCGGT
1 TTGTAAAATTATCCAAA-TACCCTCGAT
* * *
61386115 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCCAAATACCCTCGAT
*
61386142 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTATCCAAATACCCTCGA-T
* ** *
61386169 TTGCAAAA-TATTGAAATACCCTCGAC
1 TTGTAAAATTATCCAAATACCCTCGAT
*
61386195 ATGTAAAATTAT-CAAAGTACCCTCGAT
1 TTGTAAAATTATCCAAA-TACCCTCGAT
** **
61386222 TTACAAAATTA-CCATTTTACCCTCGAT
1 TTGTAAAATTATCCA-AATACCCTCGAT
61386249 TT
1 TT
61386251 ACAGAATTAC
Statistics
Matches: 110, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 24 0.22
27 81 0.74
28 5 0.05
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTATCCAAATACCCTCGAT
Found at i:61386229 original size:53 final size:53
Alignment explanation
Indices: 61386089--61386230 Score: 153
Period size: 53 Copynumber: 2.7 Consensus size: 53
61386079 TATCCTCAGT
* * * * **
61386089 TGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCCAAATATCCTCGATT
1 TGTAAAATTATCAAAGTACCCTCGATTTACAAAA-TACCCAAATACCCTCGACA
* ***
61386143 TGTAAAATTATCGAAA-TACCCTC-AGTTTGCAAAATATTGAAATACCCTCGACA
1 TGTAAAATTATC-AAAGTACCCTCGA-TTTACAAAATACCCAAATACCCTCGACA
61386196 TGTAAAATTATCAAAGTACCCTCGATTTACAAAAT
1 TGTAAAATTATCAAAGTACCCTCGATTTACAAAAT
61386231 TACCATTTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
52 3 0.04
53 41 0.56
54 26 0.36
55 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (53 bp):
TGTAAAATTATCAAAGTACCCTCGATTTACAAAATACCCAAATACCCTCGACA
Found at i:61386251 original size:27 final size:27
Alignment explanation
Indices: 61386212--61386384 Score: 265
Period size: 27 Copynumber: 6.4 Consensus size: 27
61386202 ATTATCAAAG
*
61386212 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
61386239 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
61386266 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
61386293 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
61386320 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
61386347 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
61386374 TACCCTCGATT
1 TACCCTCGATT
61386385 GTGAAATTAC
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:61386421 original size:27 final size:27
Alignment explanation
Indices: 61386389--61386771 Score: 414
Period size: 27 Copynumber: 14.3 Consensus size: 27
61386379 TCGATTGTGA
* * *
61386389 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
61386416 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
61386443 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
61386470 ATTTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * *
61386497 AATTACCG-AACACCTCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
61386523 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
61386550 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
61386577 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
61386604 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61386631 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
61386658 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61386685 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
61386712 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
61386739 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
61386765 AATTACC
1 AATTACC
61386772 ATTTTGCCCC
Statistics
Matches: 296, Mismatches: 55, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
26 39 0.13
27 256 0.86
28 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:61386501 original size:134 final size:134
Alignment explanation
Indices: 61386385--61386743 Score: 413
Period size: 134 Copynumber: 2.7 Consensus size: 134
61386375 ACCCTCGATT
* **
61386385 GTGA-AATTACTGAAATACCCTTATAGGGTAGAATTACCAAAACACCCCTAGT-TTGTAAAATTA
1 GTGAGAATTACCGAAATACCCTTATAGGGTAGAATTACCAAAACACCCCT-GTAGGGTAAAATTA
* * *
61386448 CCAAAATACCCTTGTAGGGTAGATTTA-CTAAAATA-CCCTAGTAAGGTAGAATTACCGAACACC
65 CCAAAATACCCCTATAGGGTAGAATTATC-AAAATACCCCT-GTAAGGTAGAATTACCGAACACC
61386511 TCTGTAG
128 TCTGTAG
* * * * *
61386518 GTTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAAAATTAT
1 GTGAGAATTACCGAAATACCCTTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTAC
* * * * *
61386583 CGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCC
66 CAAAATACCCCTATAGGGTAGAATTATCAAAATACCCCTGTAAGGTAGAATTACCG-AACACCTC
61386648 TGTAG
130 TGTAG
* * * * * *
61386653 G-GTAGAATTATCGCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA
1 GTG-AGAATTACCGAAATACCCTTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTA
* * *
61386717 CTAAAATACCCCTGTAGGGTGGAATTA
65 CCAAAATACCCCTATAGGGTAGAATTA
61386744 CCGAGATACC
Statistics
Matches: 191, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
133 5 0.03
134 93 0.49
135 93 0.49
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (134 bp):
GTGAGAATTACCGAAATACCCTTATAGGGTAGAATTACCAAAACACCCCTGTAGGGTAAAATTAC
CAAAATACCCCTATAGGGTAGAATTATCAAAATACCCCTGTAAGGTAGAATTACCGAACACCTCT
GTAG
Found at i:61386994 original size:27 final size:26
Alignment explanation
Indices: 61386962--61387013 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
61386952 TCTGTTGCAA
* *
61386962 TCTGGTGGCTTTGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
61386989 TCTGGTGACTTCGGCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
61387014 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:61387065 original size:67 final size:67
Alignment explanation
Indices: 61386957--61387096 Score: 244
Period size: 67 Copynumber: 2.1 Consensus size: 67
61386947 ACATATCTGT
* *
61386957 TGCAATCTGGTGGCTTTGCCACATATATCTGTTCTGGTGACTTCGGCACAATATCTGGCAGCCTC
1 TGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCAGCACAATATCTGGCAGCCTC
61387022 GC
66 GC
* *
61387024 TGCAATCTGGTGGCTTCGCCACATATATCTGTTTTGGTGACTTCATCACAATATCTGGCAGCCTC
1 TGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCAGCACAATATCTGGCAGCCTC
61387089 GC
66 GC
61387091 TGCAAT
1 TGCAAT
61387097 TTCTGTGGTG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.32
Consensus pattern (67 bp):
TGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCAGCACAATATCTGGCAGCCTC
GC
Found at i:61387208 original size:6 final size:6
Alignment explanation
Indices: 61387199--61387380 Score: 160
Period size: 6 Copynumber: 29.8 Consensus size: 6
61387189 TTGCATTCAC
* *
61387199 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG A-TCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
61387248 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTCCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
61387296 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
61387346 ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
61387381 AGTTATGATA
Statistics
Matches: 143, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
5 12 0.08
6 114 0.80
7 11 0.08
8 6 0.04
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:61387302 original size:61 final size:61
Alignment explanation
Indices: 61387200--61387389 Score: 287
Period size: 61 Copynumber: 3.1 Consensus size: 61
61387190 TGCATTCACA
61387200 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGA-TCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTT-CCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
61387261 TTCTGATTCTGATTCTGTTCCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTCCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * *
61387322 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTGATT--CTAATTCTGATTCTAG
1 TTCTGATTCTGATTCTGT-TCCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTGG
*
61387383 TTATGAT
1 TTCTGAT
61387390 AATGTTTCTT
Statistics
Matches: 121, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
60 17 0.14
61 81 0.67
62 21 0.17
63 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (61 bp):
TTCTGATTCTGATTCTGTTCCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:61387313 original size:37 final size:37
Alignment explanation
Indices: 61387200--61387375 Score: 156
Period size: 37 Copynumber: 4.5 Consensus size: 37
61387190 TGCATTCACA
*
61387200 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATTCTGATTCTGA
* *
61387237 TCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCTG-TTCCTGA
1 ----TT--CTGATTCTGATTCT-G-T-T-A-CCTGATTCTGATT-CTGA
* * *
61387285 TACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATTCTGATTCTGA
* *
61387322 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATTCTGATTCTGA
*
61387359 TTCTGATTCTAATTCTG
1 TTCTGATTCTGATTCTG
61387376 ATTCTAGTTA
Statistics
Matches: 111, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
37 58 0.52
38 3 0.03
39 1 0.01
40 1 0.01
41 3 0.03
42 13 0.12
43 13 0.12
44 2 0.02
45 1 0.01
46 1 0.01
47 3 0.03
48 12 0.11
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
TTCTGATTCTGATTCTGTTACCTGATTCTGATTCTGA
Found at i:61393190 original size:46 final size:46
Alignment explanation
Indices: 61393024--61393196 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
61393014 AACCCGCCCC
* * * * * *
61393024 TAAGTGAACTAGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
61393070 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CA
* ** *
61393121 -CA---AACTCATACTCCACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
61393163 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61393197 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 54 0.55
47 25 0.25
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:61400949 original size:18 final size:17
Alignment explanation
Indices: 61400924--61400957 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
61400914 ATTAAACTAA
61400924 TTAACTAAATGAAAATT
1 TTAACTAAATGAAAATT
*
61400941 TTAACCTAAATGCAAAT
1 TTAA-CTAAATGAAAAT
61400958 GAGATGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (17 bp):
TTAACTAAATGAAAATT
Found at i:61408443 original size:40 final size:40
Alignment explanation
Indices: 61408389--61408484 Score: 147
Period size: 41 Copynumber: 2.4 Consensus size: 40
61408379 CGTTCCAAAA
* * **
61408389 AAAATGCCGGTAAAACCAGAGCATTAGTGGCGCTTTAGGT
1 AAAACGCCGCTAAAACCAGAGCATTAACGGCGCTTTAGGT
61408429 AAAACGCCGCTAAAAACCAGAGCATTAACGGCGCTTTAGGT
1 AAAACGCCGCT-AAAACCAGAGCATTAACGGCGCTTTAGGT
61408470 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
61408485 ACCCCATAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 13 0.25
41 38 0.75
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (40 bp):
AAAACGCCGCTAAAACCAGAGCATTAACGGCGCTTTAGGT
Found at i:61408455 original size:41 final size:41
Alignment explanation
Indices: 61408400--61408487 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
61408390 AAATGCCGGT
**
61408400 AAAACCAGAGCATTAGTGGCGCTTTAGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAACGGCGCTTTAGGTAAAACGCCGCTA
61408441 AAAACCAGAGCATTAACGGCGCTTTAGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAACGGCGCTTTAGGTAAAACGCCGCTA
61408482 AAAACC
1 AAAACC
61408488 CCATAACCCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (41 bp):
AAAACCAGAGCATTAACGGCGCTTTAGGTAAAACGCCGCTA
Found at i:61408666 original size:14 final size:15
Alignment explanation
Indices: 61408649--61408682 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
61408639 ATCATTATAT
61408649 TTTAAGGAT-TATGG
1 TTTAAGGATATATGG
61408663 TTTAA-GATATATGG
1 TTTAAGGATATATGG
61408677 TTTAAG
1 TTTAAG
61408683 CAGGTTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (15 bp):
TTTAAGGATATATGG
Found at i:61409563 original size:15 final size:15
Alignment explanation
Indices: 61409543--61409574 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
61409533 TTTATTTTAG
*
61409543 AAGATAAATGTATAT
1 AAGATAAATATATAT
61409558 AAGATAAATATATAT
1 AAGATAAATATATAT
61409573 AA
1 AA
61409575 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:61410250 original size:199 final size:199
Alignment explanation
Indices: 61409901--61410313 Score: 754
Period size: 199 Copynumber: 2.1 Consensus size: 199
61409891 GTTTATACAT
61409901 AAAACGCCGCAAAAGATAGAAAATAGCGACGTTTTTTTAGAAAACGCCACAAAATTTCATTATAC
1 AAAACGCCGCAAAAGATAGAAAATAGCGACGTTTTTTTAGAAAACGCCACAAAATTTCATTATAC
*
61409966 ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGTGTTTCTATAATAAAC
66 ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
*
61410031 GCCACAACGTGTATTAGAACGGCGTCGTTTTATTGTGTACATAAAATAGGTATTAGTGGCGCTTT
131 GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTACATAAAATAGGTATTAGTGGCGCTTT
*
61410096 GCTG
196 GCTA
* * * *
61410100 AAAATGCCACAAAAGATAGAAAATAGCGGCGTTTTTTTTGAAAACGCCACAAAATTTCATTATAC
1 AAAACGCCGCAAAAGATAGAAAATAGCGACGTTTTTTTAGAAAACGCCACAAAATTTCATTATAC
61410165 ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
66 ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
*
61410230 GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTATATAAAATAGGTATTAGTGGCGCTTT
131 GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTACATAAAATAGGTATTAGTGGCGCTTT
61410295 GCTA
196 GCTA
61410299 AAAACGCCGCAAAAG
1 AAAACGCCGCAAAAG
61410314 GTCTTATTAG
Statistics
Matches: 204, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
199 204 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (199 bp):
AAAACGCCGCAAAAGATAGAAAATAGCGACGTTTTTTTAGAAAACGCCACAAAATTTCATTATAC
ATTACAGTAAAACGGCGTCGTTTCCTCAGAATAGTAGTGGCTTTAGCGGCGTTTCTATAATAAAC
GCCACAACGCGTATTAGAACGGCGTCGTTTTATTGTGTACATAAAATAGGTATTAGTGGCGCTTT
GCTA
Found at i:61412740 original size:134 final size:133
Alignment explanation
Indices: 61412555--61412804 Score: 437
Period size: 134 Copynumber: 1.9 Consensus size: 133
61412545 TGATTCCATC
*
61412555 TTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
1 TTGGTTATTCAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
61412620 ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACATTTTATATAATAAAATTGTTAT
66 ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACATTTTATATAATAAAATTGTTAT
61412685 ATT
131 ATT
* *
61412688 TTGGTTATTCAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCGAACTTATGTGTTTAGTGTG
1 TTGGTTATTCAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTG
* **
61412753 GACTTAGATTGATTTAATAGTTTATTGCTGTCTTGTTGCTCATGTTTTATAT
65 GACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACATTTTATAT
61412805 TGTTGAATTC
Statistics
Matches: 110, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
133 26 0.24
134 84 0.76
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (133 bp):
TTGGTTATTCAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTGTGG
ACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACATTTTATATAATAAAATTGTTAT
ATT
Found at i:61416024 original size:362 final size:363
Alignment explanation
Indices: 61414458--61416068 Score: 3149
Period size: 363 Copynumber: 4.4 Consensus size: 363
61414448 TGTCCATTAT
*
61414458 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
61414523 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
61414588 -ACAACGCCACGTATGATGAATCTTAAAAAATT-AAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
61414651 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
61414716 GATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
61414780 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
61414818 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
61414883 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
61414948 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
61415013 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
61415078 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
61415143 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
61415181 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
61415246 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
61415311 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
61415376 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
61415441 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
61415506 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
61415544 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
61415609 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGATGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
61415674 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
61415739 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
196 GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
61415804 GATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
261 GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
* *
61415868 TTTAAATTTCTTTAAAAGTTATAACTATTTTTTATCAA
326 TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
61415906 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
61415971 AGGCTAGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
61416036 AACAACGCCACGTATGATGAATCTTAAAAAATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATT
61416069 CAAATGTTTC
Statistics
Matches: 1242, Mismatches: 6, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
360 129 0.10
361 32 0.03
362 357 0.29
363 724 0.58
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (363 bp):
AATTACATCAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
AACAACGCCACGTATGATGAATCTTAAAAAATTAAAAAAGAATTGAAAAAAGTTCTATCGCTATT
GAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTT
GATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATT
TTTAAATTTCTTTAAAAGTTATACCTACTTTTTATCAA
Found at i:61416157 original size:15 final size:15
Alignment explanation
Indices: 61416113--61416168 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
61416103 ACAAATATGT
61416113 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
61416129 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
61416142 ATATTATTTAATTAA
1 ATATTATTTAATTAA
61416157 ATATTATTTAAT
1 ATATTATTTAAT
61416169 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:61416285 original size:9 final size:9
Alignment explanation
Indices: 61416273--61416497 Score: 150
Period size: 9 Copynumber: 24.6 Consensus size: 9
61416263 TATTTGATAT
*
61416273 CATAATTTA
1 CATAACTTA
61416282 CATAACTTA
1 CATAACTTA
* *
61416291 TATAACATA
1 CATAACTTA
*
61416300 TATAACTTA
1 CATAACTTA
61416309 CATAACTTA
1 CATAACTTA
* *
61416318 TATAACCTA
1 CATAACTTA
61416327 CATAACTTA
1 CATAACTTA
*
61416336 TATAACTTA
1 CATAACTTA
*
61416345 TATAACTTA
1 CATAACTTA
* *
61416354 GATAA-ATA
1 CATAACTTA
*
61416362 TATAACTTA
1 CATAACTTA
61416371 CATAACTTA
1 CATAACTTA
61416380 CATAATGCTTA
1 CATAA--CTTA
* *
61416391 AATATATTTATA
1 CATA-A-CT-TA
*
61416403 TCATAATTTA
1 -CATAACTTA
61416413 CATAACTTA
1 CATAACTTA
61416422 CATAACTTA
1 CATAACTTA
*
61416431 TATAACTTA
1 CATAACTTA
* *
61416440 GATAA-ATA
1 CATAACTTA
* *
61416448 TATAATTTA
1 CATAACTTA
*
61416457 CATAA-ATA
1 CATAACTTA
* * *
61416465 TATATCATA
1 CATAACTTA
*
61416474 TCATAAATTA
1 -CATAACTTA
61416484 CATAACTTA
1 CATAACTTA
61416493 CATAA
1 CATAA
61416498 TACTTAAATA
Statistics
Matches: 173, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
8 17 0.10
9 132 0.76
10 7 0.04
11 10 0.06
12 4 0.02
13 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:61416295 original size:18 final size:18
Alignment explanation
Indices: 61416273--61416497 Score: 168
Period size: 18 Copynumber: 12.3 Consensus size: 18
61416263 TATTTGATAT
* *
61416273 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
61416291 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
61416309 CATAACTTATATAACCTA
1 CATAACTTATATAACTTA
61416327 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
61416345 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
61416362 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
61416380 CATAATGCTTAAATATATTTATA
1 CATAA--CTT--ATATAACT-TA
* *
61416403 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
61416422 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
61416440 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
61416457 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
61416474 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
61416493 CATAA
1 CATAA
61416498 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
17 38 0.23
18 94 0.57
19 10 0.06
20 8 0.05
22 7 0.04
23 2 0.01
24 5 0.03
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:61416444 original size:27 final size:27
Alignment explanation
Indices: 61416273--61416444 Score: 166
Period size: 27 Copynumber: 6.2 Consensus size: 27
61416263 TATTTGATAT
* *
61416273 CATAATTTACATAACTTATATAACATA
1 CATAACTTACATAACTTATATAACTTA
* *
61416300 TATAACTTACATAACTTATATAACCTA
1 CATAACTTACATAACTTATATAACTTA
*
61416327 CATAACTTATATAACTTATATAACTTA
1 CATAACTTACATAACTTATATAACTTA
* * * *
61416354 GATAA-ATATATAACTTACATAACTTA
1 CATAACTTACATAACTTATATAACTTA
* * *
61416380 CATAATGCTTAAATATATTTATATCATAATTTA
1 CATAA--CTTACATA-A-CT-TAT-ATAACTTA
61416413 CATAACTTACATAACTTATATAACTTA
1 CATAACTTACATAACTTATATAACTTA
*
61416440 GATAA
1 CATAA
61416445 ATATATAATT
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
26 23 0.19
27 63 0.53
28 3 0.03
29 6 0.05
30 2 0.02
31 8 0.07
32 2 0.02
33 12 0.10
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (27 bp):
CATAACTTACATAACTTATATAACTTA
Found at i:61416485 original size:113 final size:114
Alignment explanation
Indices: 61416301--61416521 Score: 304
Period size: 113 Copynumber: 1.9 Consensus size: 114
61416291 TATAACATAT
* * *
61416301 ATAACTTACATAACTTATATAACCTACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
61416366 ACTTACATAACTTACATAATGCTTAAATATAT-TTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
61416414 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATA-AATAT-A
61416477 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
61416522 CATAACTAGT
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
111 5 0.05
112 18 0.19
113 62 0.66
114 9 0.10
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACCTACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:61422589 original size:37 final size:37
Alignment explanation
Indices: 61422539--61422691 Score: 186
Period size: 37 Copynumber: 4.0 Consensus size: 37
61422529 TTCTCCCAAC
61422539 AAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTA
1 AAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTA
61422576 AAACGCCGCTAAAAGCC-TGAACCTTTTAGCGGCGCTTTCACTA
1 AAACGCCGCTAAAAGCCTTG-ACC-TTTAGCGGCG--TT---TA
61422619 CAAACGCCGCTAAAAGCCTTGACCTTTAGC-GCGTTTA
1 -AAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTA
* *
61422656 AAAAGCCCGCTAAAAGCCCTGACC-TTAGCGGCGTTT
1 AAACG-CCGCTAAAAGCCTTGACCTTTAGCGGCGTTT
61422692 TTTTCCAATA
Statistics
Matches: 103, Mismatches: 2, Indels: 22
0.81 0.02 0.17
Matches are distributed among these distances:
36 11 0.11
37 45 0.44
38 10 0.10
40 4 0.04
42 3 0.03
43 8 0.08
44 20 0.19
45 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (37 bp):
AAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTA
Found at i:61422632 original size:81 final size:82
Alignment explanation
Indices: 61422516--61422688 Score: 266
Period size: 81 Copynumber: 2.1 Consensus size: 82
61422506 TAAAAGGTTA
* *
61422516 CTTTTAGCGGCGCTTCTCCCAACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTAAAACG
1 CTTTTAGCGGCGCTTCTCACAACAAACGCCGCTAAAAGCCTTGACCTTTAGC-GCGTTTAAAAAG
61422581 -CCGCTAAAAG-CCTGAAC
65 CCCGCTAAAAGCCCTG-AC
*
61422598 CTTTTAGCGGCGCTT-TCACTACAAACGCCGCTAAAAGCCTTGACCTTTAGCGCGTTTAAAAAGC
1 CTTTTAGCGGCGCTTCTCACAACAAACGCCGCTAAAAGCCTTGACCTTTAGCGCGTTTAAAAAGC
61422662 CCGCTAAAAGCCCTGAC
66 CCGCTAAAAGCCCTGAC
61422679 C--TTAGCGGCG
1 CTTTTAGCGGCG
61422689 TTTTTTTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
79 9 0.10
80 11 0.13
81 47 0.55
82 19 0.22
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (82 bp):
CTTTTAGCGGCGCTTCTCACAACAAACGCCGCTAAAAGCCTTGACCTTTAGCGCGTTTAAAAAGC
CCGCTAAAAGCCCTGAC
Found at i:61422644 original size:44 final size:42
Alignment explanation
Indices: 61422500--61422688 Score: 174
Period size: 37 Copynumber: 4.7 Consensus size: 42
61422490 TAGTGAAAAG
* * *
61422500 CGCCGCTAAAAG-GTT-ACTTTTAGCGGCGCTTCTCCCAACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT-T-CCTACAAA
61422542 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG--TT--TA-AAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCTACAAA
61422579 CGCCGCTAAAAGCC-TGAACCTTTTAGCGGCGCTTTCACTACAAA
1 CGCCGCTAAAAGCCTTG-ACC-TTTAGCGGCGCTTTC-CTACAAA
61422623 CGCCGCTAAAAGCCTTGACCTTTAGC-GCG--TT--TA-AAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCTACAAA
* *
61422659 AGCCCGCTAAAAGCCCTGACC-TTAGCGGCG
1 CG-CCGCTAAAAGCCTTGACCTTTAGCGGCG
61422689 TTTTTTTCCA
Statistics
Matches: 129, Mismatches: 5, Indels: 31
0.78 0.03 0.19
Matches are distributed among these distances:
36 11 0.09
37 42 0.33
38 11 0.09
40 4 0.03
41 1 0.01
42 16 0.12
43 10 0.08
44 32 0.25
45 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (42 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCTACAAA
Found at i:61422809 original size:43 final size:43
Alignment explanation
Indices: 61422761--61422922 Score: 220
Period size: 43 Copynumber: 3.8 Consensus size: 43
61422751 CTCCCACAAA
*
61422761 CGCCGCTAAAAGCCTTGACCTTTAACGGCGTTTGTGGGAAAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAG
* ****
61422804 CGCCGCTAAAAGCCTTAACCTTTAGCGGCGCTTT-CACTACAAA-
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG-TTTGTGGGA-AAAG
*
61422847 CGCCGCTAAAAGCATTGACCTTTAGCGGCGTTTGTGGGAAAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAG
*
61422890 CGCCGCTAAAAGCCCTGACCTTTAGCGGCGTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTT
61422923 TTTTTTCCAA
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 6 0.06
43 89 0.88
44 6 0.06
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTGTGGGAAAAG
Found at i:61422883 original size:86 final size:86
Alignment explanation
Indices: 61422738--61422919 Score: 303
Period size: 86 Copynumber: 2.1 Consensus size: 86
61422728 GGTTAAGGCT
*
61422738 TTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAACGGCGTTTGTGGGAAAA
1 TTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCATTGACCTTTAACGGCGTTTGTGGGAAAA
*
61422803 GCGCCGCTAAAAGCCTTAACC
66 GCGCCGCTAAAAGCCCTAACC
* *
61422824 TTTAGCGGCGCTT-TCACTACAAACGCCGCTAAAAGCATTGACCTTTAGCGGCGTTTGTGGGAAA
1 TTTAGCGGCGCTTCTC-CCACAAACGCCGCTAAAAGCATTGACCTTTAACGGCGTTTGTGGGAAA
*
61422888 AGCGCCGCTAAAAGCCCTGACC
65 AGCGCCGCTAAAAGCCCTAACC
61422910 TTTAGCGGCG
1 TTTAGCGGCG
61422920 TTTTTTTTTC
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 2 0.02
86 88 0.98
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (86 bp):
TTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCATTGACCTTTAACGGCGTTTGTGGGAAAA
GCGCCGCTAAAAGCCCTAACC
Found at i:61423393 original size:31 final size:32
Alignment explanation
Indices: 61423358--61423425 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 32
61423348 GTATTCCAAG
61423358 GGAATAT-CGAGGAAAGTCCCATTGAACCTTA
1 GGAATATACGAGGAAAGTCCCATTGAACCTTA
*
61423389 GGAATATGAACGAGGAAAGTCCCGTTGAACCTTA
1 GGAATAT--ACGAGGAAAGTCCCATTGAACCTTA
61423423 GGA
1 GGA
61423426 GTAGATTCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 7 0.21
34 26 0.79
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (32 bp):
GGAATATACGAGGAAAGTCCCATTGAACCTTA
Found at i:61423507 original size:46 final size:46
Alignment explanation
Indices: 61423449--61423614 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
61423439 TTTGGGCATT
61423449 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * * * *
61423495 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACATC
* * * **
61423542 CGAACTCGTTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGCC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
*
61423588 CGAGCTCATTGAGTTGAGTCCGAGTTC
1 CGAACTCATTGAGTTGAGTCCGAGTTC
61423615 GCTTGTGGGC
Statistics
Matches: 96, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 53 0.55
47 31 0.32
48 2 0.02
50 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (46 bp):
CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:61423554 original size:93 final size:93
Alignment explanation
Indices: 61423443--61423615 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
61423433 CAGATATTTG
* * * * *
61423443 GGCATTCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
61423508 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
61423536 GGCATCCGAACTCGTTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
61423601 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
61423616 CTTGTGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61428347 original size:19 final size:19
Alignment explanation
Indices: 61428323--61428372 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
61428313 GGTATAGAGC
61428323 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
61428342 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
*
61428361 ACACGTCCGTGT
1 ACACGCCCGTGT
61428373 CCCGAACCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:61430027 original size:46 final size:46
Alignment explanation
Indices: 61429957--61430130 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
61429947 TGTAACCCGC
* *
61429957 CCATAAGTGAACTCAGACTTAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
61430003 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * ** *
61430053 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
61430096 CCATTAGTGAACTCGGACTCAACTCAACGAGCTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG
61430131 AATGCCCAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.57
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:61430077 original size:93 final size:93
Alignment explanation
Indices: 61429965--61430136 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
61429955 GCCCATAAGT
* ** *
61429965 GAACTCAGACTTAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61430030 CAAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCGAATGCCTAGTTACATCTCAC
* * * *
61430058 GAACTCGGACTCAACTCAACGAGTTTGAACATTCGCATCCATTAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61430123 CGAGCTCGAATGCC
66 CAAGCTCGAATGCC
61430137 CAAATATTTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGAATGCCTAGTTACATCTCAC
Found at i:61430151 original size:46 final size:46
Alignment explanation
Indices: 61430008--61430151 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 46
61429998 CGCATCCATA
* * * *
61430008 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCCA--TACATTTC
* * * * * *
61430056 A-CGAACTCGGACTCAACTCAACGAGTTTGAACATTCGCATCCA-TT-
1 AGTGAACTCGGACTCAACTCAACGAGCTCG-A-ATGCCCATACATTTC
* *
61430101 AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCCAAATATTTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCCATACATTTC
61430147 AGTGA
1 AGTGA
61430152 CATGTCACTT
Statistics
Matches: 73, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
44 6 0.08
45 4 0.05
46 31 0.42
47 27 0.37
48 1 0.01
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCCATACATTTC
Found at i:61434765 original size:93 final size:93
Alignment explanation
Indices: 61434658--61434828 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
61434648 GCCCATAAGT
* *
61434658 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61434723 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
61434751 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61434816 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61434829 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:61434825 original size:46 final size:46
Alignment explanation
Indices: 61434650--61434825 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
61434640 TGTAACCCGC
* * * *
61434650 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
61434696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
61434746 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
61434789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61434826 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 64 0.59
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:61435282 original size:30 final size:30
Alignment explanation
Indices: 61435248--61435307 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
61435238 ATTTAATACG
61435248 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
61435278 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
61435308 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:61442390 original size:46 final size:46
Alignment explanation
Indices: 61442220--61442394 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
61442210 TGTAACCCGC
* * * * *
61442220 CCAT-AGTGAACTCGGACTCAACTCAACCAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
61442265 CCATAACTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * * *
61442315 --TTCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
61442358 CCATAAGTGAACTCGGACTCAACTCAAGGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61442395 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 21, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 6 0.06
46 54 0.53
47 27 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:61442390 original size:93 final size:93
Alignment explanation
Indices: 61442227--61442397 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
61442217 CGCCCATAGT
* *
61442227 GAACTCGGACTCAACTCAACCAGCTCGGGCGTTCGCATCCATAACTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
*
61442292 TGAGTTCGGATGCCTAGTTACATTTCAC
66 GGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
61442320 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
61442385 GGAGTTCGGATGC
66 GGAGTTCGGATGC
61442398 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
GGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:61442854 original size:30 final size:30
Alignment explanation
Indices: 61442820--61442879 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
61442810 ATTTAATACG
61442820 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
61442850 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
61442880 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:61446338 original size:45 final size:46
Alignment explanation
Indices: 61446300--61446401 Score: 138
Period size: 45 Copynumber: 2.3 Consensus size: 46
61446290 CTTTCAGCTG
*
61446300 TGGTCTTACTCTG-TAGAATCGTGATGCCATAACATCTTTCA-ATCA
1 TGGTCTTACTC-GATAGAATCATGATGCCATAACATCTTTCAGATCA
**
61446345 TGGTCTTACTCGATAGAATCATGATGCCATAATGTCTTTCAG-TCA
1 TGGTCTTACTCGATAGAATCATGATGCCATAACATCTTTCAGATCA
*
61446390 TGGTTTTACTCG
1 TGGTCTTACTCG
61446402 TTTCTGGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (46 bp):
TGGTCTTACTCGATAGAATCATGATGCCATAACATCTTTCAGATCA
Found at i:61446467 original size:46 final size:47
Alignment explanation
Indices: 61446402--61446495 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 47
61446392 GTTTTACTCG
* * *
61446402 TTTCTGGTATGGTGCCATAGTGTTTTTCAACTATGGTCTTATTTATT
1 TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
*
61446449 TTTC-GGTATAGTGTCATAGTGTCTTTCAACTATGGTCTTAATTATT
1 TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
61446495 T
1 T
61446496 CTTTCAAGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 39 0.91
47 4 0.09
ACGTcount: A:0.19, C:0.13, G:0.18, T:0.50
Consensus pattern (47 bp):
TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
Found at i:61448232 original size:40 final size:42
Alignment explanation
Indices: 61448167--61448260 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 42
61448157 ACTATGTTTG
** *
61448167 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATA-A-A
1 GCACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATA
**
61448207 GCACTTAGTGTGCAAATC-AGAATAGCTTTGGATATATATATA
1 GCACTTAGTGTGCAAATCGAG-ATAGCTTCAGATATATATATA
61448249 GCACTTAGTGTG
1 GCACTTAGTGTG
61448261 TGAGACTGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 30 0.65
41 1 0.02
42 13 0.28
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (42 bp):
GCACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATA
Found at i:61448325 original size:40 final size:41
Alignment explanation
Indices: 61448249--61448341 Score: 152
Period size: 40 Copynumber: 2.3 Consensus size: 41
61448239 TATATATATA
*
61448249 GCACTTAGTGTGTGAGACTGTGATAGCTTCATCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCAGCTATGAAAG
*
61448290 GCACTTAGTGTGTGAGACT-TGATAGCTTCGGCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCAGCTATGAAAG
*
61448330 CCACTTAGTGTG
1 GCACTTAGTGTG
61448342 CAAGATTACA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 30 0.61
41 19 0.39
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGTGAGACTGTGATAGCTTCAGCTATGAAAG
Found at i:61458341 original size:49 final size:48
Alignment explanation
Indices: 61458187--61458356 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 48
61458177 AGATACCGAC
* *
61458187 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * * * **
61458235 GACATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGACCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * *
61458284 G-CAGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAA
1 GCCA-TGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG-GTCGAT
61458333 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
61458357 ATGACACACA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.16
48 17 0.17
49 63 0.64
50 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAGGTCGAT
Found at i:61458424 original size:141 final size:145
Alignment explanation
Indices: 61458187--61458455 Score: 334
Period size: 141 Copynumber: 1.9 Consensus size: 145
61458177 AGATACCGAC
* * * * *
61458187 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGACATGTCCCAGATAGG
1 GCCATGTCCCAGACATGGTCTTACAATGACTAGCACAACAAAGTCAACGACATGTCCCAGATAGG
* * * * * *
61458252 TCTTACACTGACTTTCATATATCGAGACCGATGCAGTGTCCTAGATAGGTCTTACACTGGCTCTC
66 TCTTACACCGACTTTCATATATCAAGACCGATGCA-TGTCCCAAACAGGTCTTACACTAGCTCTC
61458317 ATCTATCAGTGTCGAA
130 ATCTATCAGTGTCGAA
*
61458333 GCCATGTCCCAGACA-GGTCTTACAATGAC-A-CACAAC-AAG-CAACGCCATGTCCCAGATAGG
1 GCCATGTCCCAGACATGGTCTTACAATGACTAGCACAACAAAGTCAACGACATGTCCCAGATAGG
* * * *
61458393 TCTTACACCGGCTTGT-ATATCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT
66 TCTTACACCGACTT-TCATATATCAAGACCGATGCATGTCCCAAACAGGTCTTACACTAGCTCT
61458456 TATAATGTGG
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
140 23 0.22
141 46 0.43
142 4 0.04
143 5 0.05
144 1 0.01
145 12 0.11
146 15 0.14
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (145 bp):
GCCATGTCCCAGACATGGTCTTACAATGACTAGCACAACAAAGTCAACGACATGTCCCAGATAGG
TCTTACACCGACTTTCATATATCAAGACCGATGCATGTCCCAAACAGGTCTTACACTAGCTCTCA
TCTATCAGTGTCGAA
Found at i:61459112 original size:109 final size:108
Alignment explanation
Indices: 61458980--61459194 Score: 403
Period size: 109 Copynumber: 2.0 Consensus size: 108
61458970 CAAAAACCTA
61458980 GACATTCTATTTATGACGTCATCATCCATCTAGAGGCACACGGCCAAGGCACACGCTCGTGTGCA
1 GACATTCTATTTATGACGTCATCATCCATCTAGAGGCACACGGCCAAGGCACACGCTCGTGTGCA
*
61459045 AGGCTGTGTCCTCCACTCGGTTGAGACCACACGGCGGTGTCTCT
66 AGGCTGTGTCCTCCACTCGGTTGA-ACCACACGGCCGTGTCTCT
*
61459089 GACATTCTATTTATGACGTCATCATCCATCTAGAGGTACACGGCCAAGGCACACGCTCGTGTGCA
1 GACATTCTATTTATGACGTCATCATCCATCTAGAGGCACACGGCCAAGGCACACGCTCGTGTGCA
61459154 AGGCTGTGTCCTCCACTCGGTTGAACCACACGGCCGTGTCT
66 AGGCTGTGTCCTCCACTCGGTTGAACCACACGGCCGTGTCT
61459195 TTGCTCGTAT
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
108 16 0.15
109 88 0.85
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (108 bp):
GACATTCTATTTATGACGTCATCATCCATCTAGAGGCACACGGCCAAGGCACACGCTCGTGTGCA
AGGCTGTGTCCTCCACTCGGTTGAACCACACGGCCGTGTCTCT
Found at i:61462194 original size:20 final size:20
Alignment explanation
Indices: 61462169--61462207 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
61462159 ACAATTTCAA
61462169 TTATTTTAC-ACATTTACAAC
1 TTATTTTACAAC-TTTACAAC
61462189 TTATTTTACAACTTTACAA
1 TTATTTTACAACTTTACAA
61462208 AATAGCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTTACAACTTTACAAC
Done.