Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 22 of 444
Found at i:5962383 original size:3 final size:3
Alignment explanation
Indices: 5962375--5962421 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
5962365 CGCAATTCTC
5962375 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
5962422 CTTTCCTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:5964864 original size:218 final size:218
Alignment explanation
Indices: 5964486--5965359 Score: 1741
Period size: 218 Copynumber: 4.0 Consensus size: 218
5964476 GATAACTCTA
5964486 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5964551 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5964616 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5964681 ATATAAAAATAAATTGATGTATT
196 ATATAAAAATAAATTGATGTATT
5964704 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5964769 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5964834 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5964899 ATATAAAAATAAATTGATGTATT
196 ATATAAAAATAAATTGATGTATT
5964922 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTAT-GGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5964986 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5965051 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5965116 ATATAAAAATAAATTGATGTATT
196 ATATAAAAATAAATTGATGTATT
5965139 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5965204 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5965269 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5965334 ATATAAAAATAAATTGATGTATT
196 ATATAAAAATAAATTGATGTATT
5965357 TAT
1 TAT
5965360 TTATTTAAAT
Statistics
Matches: 655, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
217 217 0.33
218 438 0.67
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (218 bp):
TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
ATATAAAAATAAATTGATGTATT
Found at i:5965335 original size:435 final size:436
Alignment explanation
Indices: 5964486--5965359 Score: 1741
Period size: 435 Copynumber: 2.0 Consensus size: 436
5964476 GATAACTCTA
5964486 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5964551 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5964616 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5964681 ATATAAAAATAAATTGATGTATTTATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGA
196 ATATAAAAATAAATTGATGTATTTATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGA
5964746 TAAATACCAAAACTATACATGAATTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTG
261 TAAATACCAAAACTATACATGAATTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTG
5964811 ATCTAATTCTTGTAAATTATTAATACAATTATTGATATAACATCATTTTATGTTATATATTTCAT
326 ATCTAATTCTTGTAAATTATTAATACAATTATTGATATAACATCATTTTATGTTATATATTTCAT
5964876 ATATGAATAATTATATTTACCCAATATAAAAATAAATTGATGTATT
391 ATATGAATAATTATATTTACCCAATATAAAAATAAATTGATGTATT
5964922 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTAT-GGATAAATACCAAAACTATACATGAA
1 TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
5964986 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
66 TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
5965051 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
131 TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
5965116 ATATAAAAATAAATTGATGTATTTATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGA
196 ATATAAAAATAAATTGATGTATTTATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGA
5965181 TAAATACCAAAACTATACATGAATTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTG
261 TAAATACCAAAACTATACATGAATTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTG
5965246 ATCTAATTCTTGTAAATTATTAATACAATTATTGATATAACATCATTTTATGTTATATATTTCAT
326 ATCTAATTCTTGTAAATTATTAATACAATTATTGATATAACATCATTTTATGTTATATATTTCAT
5965311 ATATGAATAATTATATTTACCCAATATAAAAATAAATTGATGTATT
391 ATATGAATAATTATATTTACCCAATATAAAAATAAATTGATGTATT
5965357 TAT
1 TAT
5965360 TTATTTAAAT
Statistics
Matches: 438, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
435 400 0.91
436 38 0.09
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (436 bp):
TATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGATAAATACCAAAACTATACATGAA
TTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTGATCTAATTCTTGTAAATTATTAA
TACAATTATTGATATAACATCATTTTATGTTATATATTTCATATATGAATAATTATATTTACCCA
ATATAAAAATAAATTGATGTATTTATATGATATAGGTAAAAAGTTTATGTAATAAATTTATGGGA
TAAATACCAAAACTATACATGAATTATGGTTTAATGTGCAATTATATACATGAAATTTTGATTTG
ATCTAATTCTTGTAAATTATTAATACAATTATTGATATAACATCATTTTATGTTATATATTTCAT
ATATGAATAATTATATTTACCCAATATAAAAATAAATTGATGTATT
Found at i:5965419 original size:31 final size:31
Alignment explanation
Indices: 5965384--5965458 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 31
5965374 ATGATTAAAT
* *
5965384 CAAAATTAAAGTTTTAAGTATATATTTGAAC
1 CAAAATTAAAGTTTCAAGTATATAATTGAAC
* * * * *
5965415 CAAAATTAGAGTATCACGTGTATAATTGCAC
1 CAAAATTAAAGTTTCAAGTATATAATTGAAC
5965446 C-AAATTAAAGTTT
1 CAAAATTAAAGTTT
5965459 ATGCGTTACA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 10 0.29
31 25 0.71
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (31 bp):
CAAAATTAAAGTTTCAAGTATATAATTGAAC
Found at i:5967603 original size:43 final size:46
Alignment explanation
Indices: 5967523--5967628 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 46
5967513 TTTTTTTTTC
*
5967523 TTTCCTTTTTTCTTTATTTCTCTCCCTGTTCTGTTCGTGCCCTTC-T
1 TTTCC-TTTTTCTTTATTTCTCTCCCTATTCTGTTCGTGCCCTTCTT
*
5967569 TTTCCTTTTTCTTT-TTT-TTTCCCTATTCTGTTCGTGCCCTTCTT
1 TTTCCTTTTTCTTTATTTCTCTCCCTATTCTGTTCGTGCCCTTCTT
5967613 TTTCCTTTTTCTTTAT
1 TTTCCTTTTTCTTTAT
5967629 GTTTTATTTC
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
43 23 0.41
44 18 0.32
45 10 0.18
46 5 0.09
ACGTcount: A:0.03, C:0.27, G:0.07, T:0.63
Consensus pattern (46 bp):
TTTCCTTTTTCTTTATTTCTCTCCCTATTCTGTTCGTGCCCTTCTT
Found at i:5967699 original size:18 final size:20
Alignment explanation
Indices: 5967669--5967710 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
5967659 ATATTATATC
* *
5967669 ATTATTATTATTATATTTTTA
1 ATTATAATTATTAT-TTCTTA
5967690 ATTATAATTATTATTTCTTA
1 ATTATAATTATTATTTCTTA
5967710 A
1 A
5967711 ATCTTAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATAATTATTATTTCTTA
Found at i:5969341 original size:67 final size:67
Alignment explanation
Indices: 5969233--5969368 Score: 263
Period size: 67 Copynumber: 2.0 Consensus size: 67
5969223 CATACCTGGC
*
5969233 CACTAATACAGTTCTCGTAAATCACGGTACATCTTCGTTCCTCCAGGATGTAATGCAAAAGAACT
1 CACTAATACAGTTCTCGTAAATCACGATACATCTTCGTTCCTCCAGGATGTAATGCAAAAGAACT
5969298 AT
66 AT
5969300 CACTAATACAGTTCTCGTAAATCACGATACATCTTCGTTCCTCCAGGATGTAATGCAAAAGAACT
1 CACTAATACAGTTCTCGTAAATCACGATACATCTTCGTTCCTCCAGGATGTAATGCAAAAGAACT
5969365 AT
66 AT
5969367 CA
1 CA
5969369 TGTACTTCTC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (67 bp):
CACTAATACAGTTCTCGTAAATCACGATACATCTTCGTTCCTCCAGGATGTAATGCAAAAGAACT
AT
Found at i:5975010 original size:14 final size:15
Alignment explanation
Indices: 5974974--5975010 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
5974964 TTTCTTTTAT
*
5974974 TTATTATAACTATTA
1 TTATTATATCTATTA
5974989 -TATTATATC-ATTA
1 TTATTATATCTATTA
5975002 TTATTATAT
1 TTATTATAT
5975011 TTTTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATATCTATTA
Found at i:5975201 original size:20 final size:20
Alignment explanation
Indices: 5975164--5975201 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5975154 TGTAGAATTG
* *
5975164 ATTTTTTATTTTTTATAATA
1 ATTTTTTATTTATAATAATA
5975184 ATTTTTTATTTATAATAA
1 ATTTTTTATTTATAATAA
5975202 CTATAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
ATTTTTTATTTATAATAATA
Found at i:5976005 original size:18 final size:17
Alignment explanation
Indices: 5975974--5976007 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
5975964 AGATAAGATG
5975974 TGTTAGAGTAGTTAGTT
1 TGTTAGAGTAGTTAGTT
*
5975991 TGTTATGAGTTGTTAGT
1 TGTTA-GAGTAGTTAGT
5976008 CTGGTGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (17 bp):
TGTTAGAGTAGTTAGTT
Found at i:5980894 original size:18 final size:17
Alignment explanation
Indices: 5980863--5980896 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
5980853 GATGGATGCA
5980863 TGTTAGAGTAGTTAGTT
1 TGTTAGAGTAGTTAGTT
*
5980880 TGTTATGAGTTGTTAGT
1 TGTTA-GAGTAGTTAGT
5980897 CTGGTGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (17 bp):
TGTTAGAGTAGTTAGTT
Found at i:5982134 original size:2 final size:2
Alignment explanation
Indices: 5982127--5982164 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
5982117 GTAAGCAAGC
5982127 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5982165 GCTGCTGCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5987542 original size:31 final size:29
Alignment explanation
Indices: 5987507--5987576 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
5987497 ATACCAAAAC
5987507 TATACATGAA-TTATGGTTTAATGTGCAATTA
1 TATACATGAACTT-T-GTTT-ATGTGCAATTA
* *
5987538 TATACATGAACTTTGTTTTTGTGCAATTT
1 TATACATGAACTTTGTTTATGTGCAATTA
5987567 TATACATGAA
1 TATACATGAA
5987577 ATTTTGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 19 0.53
30 4 0.11
31 11 0.31
32 2 0.06
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (29 bp):
TATACATGAACTTTGTTTATGTGCAATTA
Found at i:5987909 original size:2 final size:2
Alignment explanation
Indices: 5987902--5987928 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5987892 TGAAATGATA
5987902 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
5987929 ATAAGTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5988219 original size:5 final size:5
Alignment explanation
Indices: 5988209--5988236 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
5988199 GAATATTATG
5988209 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
5988237 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:5988603 original size:29 final size:29
Alignment explanation
Indices: 5988570--5988645 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
5988560 TGACATGAAT
* *
5988570 TCTCAATGAACAAGTTCTTCATCGCAAAC
1 TCTCAACGAACAAGTTCTTCATCACAAAC
5988599 TCTCAACGAACAAGTTCTTCATCACAAAC
1 TCTCAACGAACAAGTTCTTCATCACAAAC
5988628 TCTCAACGAACAAGTTCT
1 TCTCAACGAACAAGTTCT
5988646 CCACCTCTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.36, C:0.29, G:0.09, T:0.26
Consensus pattern (29 bp):
TCTCAACGAACAAGTTCTTCATCACAAAC
Found at i:5995640 original size:5 final size:5
Alignment explanation
Indices: 5995630--5995662 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
5995620 CCAATTTGTA
5995630 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
5995663 GAACATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:5996675 original size:43 final size:43
Alignment explanation
Indices: 5996610--5996838 Score: 341
Period size: 43 Copynumber: 5.3 Consensus size: 43
5996600 TTAAAAAAAT
*
5996610 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCACACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
5996653 GCCACTAAAGGTCATGACCTTTAGCAGCGCTTTTACCACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
5996696 GCCGCTAAATGTCATGACCTTTAGCGGCACTTTTCCCACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
5996739 GCCGCTAAATGTCATGACCTTTAGCGGCTCTTTTCCCACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * ***
5996782 GCCGCTAATGGTCATGACCTTTAGAGGCGCAAATCCCACAAAC
1 GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
5996825 GCCGCTAAAGGTCA
1 GCCGCTAAAGGTCA
5996839 CAAAATTTTA
Statistics
Matches: 168, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 168 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:5997116 original size:19 final size:18
Alignment explanation
Indices: 5997092--5997146 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
5997082 TTAAGTTATT
5997092 AAATATTAAAATAAAAATA
1 AAATA-TAAAATAAAAATA
* *
5997111 AAATATAGAATCAAAACTA
1 AAATATAAAAT-AAAAATA
5997130 AAATA-AATAATAAAAAT
1 AAATATAA-AATAAAAAT
5997147 TAGATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (18 bp):
AAATATAAAATAAAAATA
Found at i:5997421 original size:23 final size:23
Alignment explanation
Indices: 5997385--5997633 Score: 240
Period size: 23 Copynumber: 10.9 Consensus size: 23
5997375 AAACAGATGC
* *
5997385 CAATTTACAACATTTAAGCACTT
1 CAATTTACAGCATTTAAACACTT
*
5997408 CAATTTATAGCATTTAAACACTT
1 CAATTTACAGCATTTAAACACTT
*
5997431 CAATTTGCAGCACTTT-AACA-TCT
1 CAATTTACAGCA-TTTAAACACT-T
* *
5997454 CAATTAACAACATTTATATA-AC-T
1 CAATTTACAGCATTTA-A-ACACTT
* *
5997477 CAA-TTACAGCAATAAAACA-TCT
1 CAATTTACAGCATTTAAACACT-T
* **
5997499 CAATTTCCAGCAACTAAACACTT
1 CAATTTACAGCATTTAAACACTT
* * *
5997522 CAATTTGCAGTACTTAAACACTT
1 CAATTTACAGCATTTAAACACTT
* * *
5997545 CAATATACAACATTTAAACACTG
1 CAATTTACAGCATTTAAACACTT
*
5997568 CAATTTACAACATTTAAACACTT
1 CAATTTACAGCATTTAAACACTT
5997591 CAATTTACAGCATTTAAACACTT
1 CAATTTACAGCATTTAAACACTT
*
5997614 CAATTTGCAGCATTTAAACA
1 CAATTTACAGCATTTAAACA
5997634 ACAGCATCCA
Statistics
Matches: 186, Mismatches: 29, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.01
21 2 0.01
22 16 0.09
23 160 0.86
24 6 0.03
25 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (23 bp):
CAATTTACAGCATTTAAACACTT
Found at i:5998075 original size:7 final size:7
Alignment explanation
Indices: 5998060--5998090 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
5998050 AAGTTTAGGA
*
5998060 GTTAGGG
1 GTTATGG
5998067 GTTATGG
1 GTTATGG
5998074 GTTATGG
1 GTTATGG
5998081 GTTATGG
1 GTTATGG
5998088 GTT
1 GTT
5998091 CAGGGTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (7 bp):
GTTATGG
Found at i:5998082 original size:14 final size:14
Alignment explanation
Indices: 5998060--5998095 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
5998050 AAGTTTAGGA
5998060 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
*
5998074 GTTATGGGTTATGG
1 GTTAGGGGTTATGG
5998088 GTTCAGGG
1 GTT-AGGG
5998096 TTAATATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.14, C:0.03, G:0.47, T:0.36
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:5998125 original size:16 final size:16
Alignment explanation
Indices: 5998104--5998145 Score: 77
Period size: 15 Copynumber: 2.7 Consensus size: 16
5998094 GGTTAATATC
5998104 AACCCCTAAAACCTTA
1 AACCCCTAAAACCTTA
5998120 AACCCCT-AAACCTTA
1 AACCCCTAAAACCTTA
5998135 AACCCCTAAAA
1 AACCCCTAAAA
5998146 AATCATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (16 bp):
AACCCCTAAAACCTTA
Found at i:5998194 original size:48 final size:45
Alignment explanation
Indices: 5998123--5998247 Score: 126
Period size: 48 Copynumber: 2.7 Consensus size: 45
5998113 AACCTTAAAC
* * *
5998123 CCCTAAACCTTAAACCCCTAAAAAATCATAGACACTAGTCTATATAA
1 CCCTAAACCTTAAACCCCAAAAAAATCATAAACACTAATC--TATAA
* * *
5998170 TCCCTAAACCCCTAAA-CCCAAAAAAACCCTAAACACTAATCTATAA
1 -CCCTAAA-CCTTAAACCCCAAAAAAATCATAAACACTAATCTATAA
*
5998216 CGCCTAAACCTTAAATCCCAAAAAACATCATA
1 C-CCTAAACCTTAAACCCCAAAAAA-ATCATA
5998248 TGGATGTTGA
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
45 7 0.11
46 20 0.31
47 4 0.06
48 27 0.42
49 6 0.09
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.20
Consensus pattern (45 bp):
CCCTAAACCTTAAACCCCAAAAAAATCATAAACACTAATCTATAA
Found at i:5998826 original size:19 final size:20
Alignment explanation
Indices: 5998791--5998834 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
5998781 TTAGATTTAA
*
5998791 AAAAATATTGATAAATAAAT
1 AAAAACATTGATAAATAAAT
5998811 AAAAACATTGAT-AATAAAT
1 AAAAACATTGATAAATAAAT
5998830 AAAAA
1 AAAAA
5998835 TAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAAACATTGATAAATAAAT
Found at i:5998842 original size:11 final size:11
Alignment explanation
Indices: 5998826--5998850 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5998816 CATTGATAAT
5998826 AAATAAAAATA
1 AAATAAAAATA
5998837 AAATAAAAATA
1 AAATAAAAATA
5998848 AAA
1 AAA
5998851 ATGTATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:5999115 original size:6 final size:6
Alignment explanation
Indices: 5999073--5999115 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
5999063 ACCCATACGA
* * *
5999073 TCCCTT CCCCTT CCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
5999116 GGTTTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (6 bp):
TCCCTT
Found at i:5999115 original size:12 final size:12
Alignment explanation
Indices: 5999073--5999114 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
5999063 ACCCATACGA
5999073 TCCCTTCCCCTT
1 TCCCTTCCCCTT
*
5999085 CCCCTTCCCCTT
1 TCCCTTCCCCTT
*
5999097 TCCCTTTCCCTT
1 TCCCTTCCCCTT
5999109 TCCCTT
1 TCCCTT
5999115 TGGTTTTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (12 bp):
TCCCTTCCCCTT
Found at i:6001554 original size:13 final size:13
Alignment explanation
Indices: 6001511--6001554 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
6001501 GTTTATCTAC
*
6001511 AATATTTAAATTT
1 AATATTTAAAATT
*
6001524 AAAATTTAAAATT
1 AATATTTAAAATT
*
6001537 TATATTTAAAATT
1 AATATTTAAAATT
6001550 AATAT
1 AATAT
6001555 AATTTAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATATTTAAAATT
Found at i:6001615 original size:22 final size:21
Alignment explanation
Indices: 6001576--6001616 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
6001566 TTTACATAAT
*
6001576 ATTATTTAACTAATATATTTA
1 ATTATTTAACTAAAATATTTA
*
6001597 ATTATTTTAATTAAAATATT
1 ATTA-TTTAACTAAAATATT
6001617 GAAGTCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATTTAACTAAAATATTTA
Found at i:6004403 original size:19 final size:21
Alignment explanation
Indices: 6004375--6004422 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
6004365 TTATTATTTA
6004375 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
6004395 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
6004415 TTTTAGTT
1 TTTTAGTT
6004423 ACAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:6004627 original size:43 final size:43
Alignment explanation
Indices: 6004566--6004670 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
6004556 TTTTCATTTA
*
6004566 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAGGAC
1 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGAC
*
6004609 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGAC
1 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGAC
*
6004652 ATGACTTTTAGTGGCGTTT
1 ATGACTTTTAGCGGCGTTT
6004671 TTTTAAATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (43 bp):
ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGAC
Found at i:6004777 original size:31 final size:33
Alignment explanation
Indices: 6004718--6004778 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
6004708 ATAGAGGCGT
* *
6004718 TTTTTGCGGCGCTTGTGAAAGCGTCGCTAATAG
1 TTTTAGCGGCGCTTGTGAAAGCGCCGCTAATAG
*
6004751 TTTTAGCGGCGCTT-T-TAAGCGCCGCTAA
1 TTTTAGCGGCGCTTGTGAAAGCGCCGCTAA
6004779 AGGCCAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 11 0.44
32 1 0.04
33 13 0.52
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (33 bp):
TTTTAGCGGCGCTTGTGAAAGCGCCGCTAATAG
Found at i:6004891 original size:21 final size:22
Alignment explanation
Indices: 6004865--6004923 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
6004855 GTTTTAAGAA
*
6004865 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
6004886 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
6004908 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
6004924 GATTTATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:6004958 original size:24 final size:26
Alignment explanation
Indices: 6004909--6004958 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
6004899 TGTTTTTATG
*
6004909 TTTTTAAATATATTTGATTTATTAAA
1 TTTTTAAATATATTTGATTTAATAAA
*
6004935 TTTTTAAAT-T-TTTTATTTAATAAA
1 TTTTTAAATATATTTGATTTAATAAA
6004959 ATAAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 12 0.55
25 1 0.05
26 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTTAAATATATTTGATTTAATAAA
Found at i:6004960 original size:25 final size:26
Alignment explanation
Indices: 6004909--6004960 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
6004899 TGTTTTTATG
*
6004909 TTTTTAAATATATTTGATTTATTAAA
1 TTTTTAAATATATTTGATTTATAAAA
*
6004935 TTTTTAAAT-T-TTTTATTTAATAAAA
1 TTTTTAAATATATTTGATTT-ATAAAA
6004960 T
1 T
6004961 AAGAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 7 0.30
25 7 0.30
26 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTTAAATATATTTGATTTATAAAA
Found at i:6005509 original size:3 final size:3
Alignment explanation
Indices: 6005501--6005620 Score: 222
Period size: 3 Copynumber: 40.0 Consensus size: 3
6005491 AACTTTAGGT
*
6005501 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6005549 GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6005597 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
6005621 GGAGGAGGAG
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 113 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6007444 original size:2 final size:2
Alignment explanation
Indices: 6007437--6007467 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6007427 GTAAGCAAGC
6007437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6007468 CATGCTGCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6010335 original size:3 final size:3
Alignment explanation
Indices: 6010327--6010370 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
6010317 AGAATTGAAG
6010327 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
6010371 TATTATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6010375 original size:3 final size:3
Alignment explanation
Indices: 6010369--6010399 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
6010359 AATAATAATA
6010369 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
6010400 GAGAATGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:6013499 original size:3 final size:3
Alignment explanation
Indices: 6013491--6013528 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6013481 GAGTGGCACG
6013491 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6013529 CTTTAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6015374 original size:26 final size:24
Alignment explanation
Indices: 6015328--6015400 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 24
6015318 AATAATAAGC
*
6015328 ATAACATATAAAAATACATACATGAA
1 ATAATATATAAAAA-ACATACAT-AA
6015354 ATACTATATATAAAAAA-ATACATAA
1 ATA--ATATATAAAAAACATACATAA
* *
6015379 CTAATA-ATAAAAAATATACATA
1 ATAATATATAAAAAACATACATA
6015401 CAACGACATA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
22 8 0.19
23 10 0.24
25 4 0.10
26 9 0.21
27 1 0.02
28 10 0.24
ACGTcount: A:0.63, C:0.10, G:0.01, T:0.26
Consensus pattern (24 bp):
ATAATATATAAAAAACATACATAA
Found at i:6015505 original size:23 final size:27
Alignment explanation
Indices: 6015454--6015511 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
6015444 TAACATTAAA
6015454 AATATATATAATAATATATACAAATAT
1 AATATATATAATAATATATACAAATAT
6015481 AATATATAT-AT-ATATATTA-AAATAAT
1 AATATATATAATAATATA-TACAAAT-AT
6015507 AATAT
1 AATAT
6015512 GAAAAAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
25 9 0.31
26 11 0.38
27 9 0.31
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
AATATATATAATAATATATACAAATAT
Found at i:6016246 original size:24 final size:22
Alignment explanation
Indices: 6016219--6016274 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
6016209 CATTTGTATC
6016219 AGGGGGAGAGAAAAAAAGGAGAG
1 AGGGGGAGAGAAAAAAA-GAGAG
* *
6016242 AAGGGGAGAGGGAAGAAAAGAGAG
1 -AGGGG-GAGAGAAAAAAAGAGAG
6016266 A-GGGGAGAG
1 AGGGGGAGAG
6016275 GAGGGAGCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 3 0.11
23 1 0.04
24 10 0.36
25 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (22 bp):
AGGGGGAGAGAAAAAAAGAGAG
Found at i:6016275 original size:23 final size:25
Alignment explanation
Indices: 6016219--6016275 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
6016209 CATTTGTATC
*
6016219 AGGGG-GAGAGAAAAAAAGGAGAGA
1 AGGGGAGAGGGAAAAAAAGGAGAGA
*
6016243 AGGGGAGAGGGAAGAAAA-GAGAG-
1 AGGGGAGAGGGAAAAAAAGGAGAGA
6016266 AGGGGAGAGG
1 AGGGGAGAGG
6016276 AGGGAGCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 10 0.33
24 10 0.33
25 10 0.33
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (25 bp):
AGGGGAGAGGGAAAAAAAGGAGAGA
Found at i:6016656 original size:20 final size:21
Alignment explanation
Indices: 6016633--6016681 Score: 55
Period size: 25 Copynumber: 2.2 Consensus size: 21
6016623 TTTATGGTAC
6016633 AAAT-TGATAATAGGTTAGGT
1 AAATATGATAATAGGTTAGGT
6016653 AAATGTTCATGATAATAGGTTAGGT
1 AAA---T-ATGATAATAGGTTAGGT
6016678 AAAT
1 AAAT
6016682 GTTCCATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
20 3 0.12
22 1 0.04
23 1 0.04
25 19 0.79
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (21 bp):
AAATATGATAATAGGTTAGGT
Found at i:6016699 original size:26 final size:26
Alignment explanation
Indices: 6016637--6016745 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6016627 TGGTACAAAT
6016637 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6016662 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6016688 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6016714 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
6016740 TGATAA
1 TGATAA
6016746 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:6018255 original size:26 final size:26
Alignment explanation
Indices: 6018226--6018278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6018216 TTTACAGTTT
6018226 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
6018252 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
6018278 T
1 T
6018279 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:6022437 original size:20 final size:21
Alignment explanation
Indices: 6022414--6022462 Score: 55
Period size: 25 Copynumber: 2.2 Consensus size: 21
6022404 TTTATGGTAC
6022414 AAAT-TGATAATAGGTTAGGT
1 AAATATGATAATAGGTTAGGT
6022434 AAATGTTCATGATAATAGGTTAGGT
1 AAA---T-ATGATAATAGGTTAGGT
6022459 AAAT
1 AAAT
6022463 GTTCCATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
20 3 0.12
22 1 0.04
23 1 0.04
25 19 0.79
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (21 bp):
AAATATGATAATAGGTTAGGT
Found at i:6022480 original size:26 final size:26
Alignment explanation
Indices: 6022418--6022526 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6022408 TGGTACAAAT
6022418 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6022443 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6022469 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6022495 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
6022521 TGATAA
1 TGATAA
6022527 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:6024037 original size:26 final size:26
Alignment explanation
Indices: 6024008--6024060 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6023998 TTTACAGTTT
6024008 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
6024034 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
6024060 T
1 T
6024061 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:6026251 original size:23 final size:24
Alignment explanation
Indices: 6026225--6026285 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
6026215 AGCCCCCCCT
6026225 AAAAAACCTAACCC-AAAAAAAAA
1 AAAAAACCTAACCCTAAAAAAAAA
6026248 AAAAAACCTAACCCTAAAAAAAAA
1 AAAAAACCTAACCCTAAAAAAAAA
6026272 AAAAAACCTAACCC
1 AAAAAACCTAACCC
6026286 CCCCAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 14 0.38
24 23 0.62
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.07
Consensus pattern (24 bp):
AAAAAACCTAACCCTAAAAAAAAA
Found at i:6037366 original size:71 final size:71
Alignment explanation
Indices: 6037225--6037390 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
6037215 GAGTTAAGCC
* ** * *
6037225 TTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCCACGC
*
6037290 TGAGGTA
65 CGAGGTA
*
6037297 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCCACGC
6037361 CGAGGTA
65 CGAGGTA
*
6037368 TTTTCAATTTTTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
6037391 ACGTTGTTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
70 8 0.09
71 41 0.48
72 32 0.38
73 4 0.05
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCCACGCC
GAGGTA
Found at i:6037494 original size:140 final size:140
Alignment explanation
Indices: 6037324--6037950 Score: 1080
Period size: 140 Copynumber: 4.5 Consensus size: 140
6037314 TTAATTTCAA
* *
6037324 CTCATATTGCGAGA-GTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTTTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
6037388 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
6037453 TCAAAATCAG
131 TCAAAATCAG
* * *
6037463 CTCATATTGTGAGAGGTGAGTTGAGCTTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
6037528 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
6037593 TCAAAATCAG
131 TCAAAATCAG
* *
6037603 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGTTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
6037668 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
6037733 TCGAAATCAG
131 TCAAAATCAG
*
6037743 CTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
6037808 TTT-CTGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
66 TTTAC-GTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
6037872 TTCAAAATCAG
130 TTCAAAATCAG
*
6037883 CTCATATTACGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
6037947 TCAA
62 TCAA
6037951 AAAAAAAATT
Statistics
Matches: 463, Mismatches: 19, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
139 15 0.03
140 419 0.90
142 23 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:6037666 original size:13 final size:13
Alignment explanation
Indices: 6037648--6037681 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6037638 TGTTGAGGTA
*
6037648 TTTTCAATTTCTG
1 TTTTCAATTTATG
6037661 TTTTCAATTTATG
1 TTTTCAATTTATG
6037674 TTGTTCAA
1 TT-TTCAA
6037682 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:6037806 original size:13 final size:13
Alignment explanation
Indices: 6037788--6037821 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
6037778 CGCTGAGGTA
6037788 TTTTCAATTTCTG
1 TTTTCAATTTCTG
6037801 TTTTCAATTTCTG
1 TTTTCAATTTCTG
6037814 TTGTTCAA
1 TT-TTCAA
6037822 GAATCAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:6038068 original size:72 final size:72
Alignment explanation
Indices: 6037955--6038095 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
6037945 TTTCAAAAAA
6037955 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
6038020 TGTTTTC
66 TGTTTTC
6038027 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
6038092 TGTT
66 TGTT
6038096 CAAAATGAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:6038106 original size:49 final size:49
Alignment explanation
Indices: 6038049--6038144 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
6038039 ATATTGCGAG
*
6038049 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
6038098 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
6038145 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:6038191 original size:121 final size:121
Alignment explanation
Indices: 6037977--6038216 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
6037967 ATATTGCGAG
*
6037977 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
6038042 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
6038098 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * * *
6038163 TTGTGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
6038217 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:6038258 original size:78 final size:75
Alignment explanation
Indices: 6038101--6038734 Score: 539
Period size: 78 Copynumber: 8.1 Consensus size: 75
6038091 CTGTTCAAAA
* * *
6038101 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTCATA
1 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
* **
6038163 TTGTGAGAAA
66 TTGCGAGAGG
*
6038173 TTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTC
1 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAACTC
* **
6038238 ATATTGTGAGAAA
63 ATATTGCGAGAGG
*
6038251 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
6038316 TTGCGAGAGG
66 TTGCGAGAGG
* * * *
6038326 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACT-AGT
1 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCA-T
6038389 ATTGCGAGAGG
65 ATTGCGAGAGG
** ** * * * *
6038400 TGAGTTGAGCCTTGGC-TCACGCGCTGAGCTATTTTCAATTTTTGTCTTTAAAAAAAATCAACTC
1 TGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
6038464 ATATTGCGAGAGG
63 ATATTGCGAGAGG
** * * *
6038477 TGAGTTGAG-CTTTAGATCATACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAAC
1 TGAGTTGAGCCTCAAGA-CAT--GCTGAGGTA--TTTTCAATTTCTGTTTTTCAAAAAAATCAAC
* *
6038541 TCACATTGCGAGATG
61 TCATATTGCGAGAGG
* ** **
6038556 TGAGTTAAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAGATTTTGTTTTCA
1 TGAGTTGAGCCTCAAG--ACATGCT-GAGGTATTTTCAATTTCTGTTTTTCA-A----------A
* *
6038620 AAAATCAACTCATATTGCAAGAAG
52 AAAATCAACTCATATTGCGAGAGG
** * *
6038644 TGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCA
1 TGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAATTTCTG---TTTTTCAAAAAAA-TCA
6038708 ACTCATATTGCGAGAGG
59 ACTCATATTGCGAGAGG
6038725 TGAGTTGAGC
1 TGAGTTGAGC
6038735 TTTTTAATTT
Statistics
Matches: 464, Mismatches: 57, Indels: 73
0.78 0.10 0.12
Matches are distributed among these distances:
72 39 0.08
73 6 0.01
74 41 0.09
75 65 0.14
76 23 0.05
77 60 0.13
78 73 0.16
79 54 0.12
80 8 0.02
81 31 0.07
82 1 0.00
88 52 0.11
89 2 0.00
90 1 0.00
91 8 0.02
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (75 bp):
TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
TTGCGAGAGG
Found at i:6038485 original size:77 final size:77
Alignment explanation
Indices: 6038117--6038946 Score: 501
Period size: 88 Copynumber: 10.4 Consensus size: 77
6038107 GAGCCTCAAG
* * * * ** *
6038117 ACACGCTGAGGTAATTTCAATTTCTG-TTTT--CAAAATTCAACTCATATTGTGAGAAATTAGTT
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
**
6038179 GAGCC-T--CAAG
66 GAGCCTTGGC-TC
* * **
6038189 ACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGA
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTT---AAAAAAAATCAACTCATATTGCGAGAGGTGA
**
6038254 GTTGAGCC-T--CAAG
63 GTTGAGCCTTGGC-TC
* * *
6038267 ACATGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
6038332 GAGCCTCAGG---
66 GAGCCT-TGGCTC
* * *
6038342 ACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACT-AGTATTGCGAGAGGTGAGT
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCA-TATTGCGAGAGGTGAGT
6038405 TGAGCCTTGGCTC
65 TGAGCCTTGGCTC
* * * *
6038418 ACGCGCTGAGCTATTTTCAATTTTTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
6038483 GAGCTTTAGATC
66 GAGCCTTGGCTC
* * * * * * *
6038495 ATACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAG
1 ACACGCTGAGGTA--TTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAG
* * *
6038560 TTAAGCCTCGGGTC
64 TTGAGCCTTGGCTC
* ** *
6038574 ACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAGATTTTGTTTTCAAAAATCAACTCATATTGC
1 ACACGCT-GAGGTATTTTCAATTTCTGTTTTT-A-A---------AAAAAATCAACTCATATTGC
* *
6038638 AAGAAGTGAGTTGAGCCTTGGCTC
54 GAGAGGTGAGTTGAGCCTTGGCTC
** * *
6038662 ACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTG
1 ACACGCTGAGGTATTTTCAATTTCTG---TTTTT-AAAAAAAATCAACTCATATTGCGAGAGGTG
* ***
6038727 AGTTGAGCTTTTTAATTTC
62 AGTTGAGC--CTT-GGCTC
* * * * * *
6038746 TGCGAAGTTGAGTTGAGTCTTTTAATTTCTGTTTTT--CAAAAATCAACTCATATTGCGAGAGGT
1 -AC-ACGCTGAGGT-A-T-TTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGT
* *
6038809 GAGTTGAACCTTCAG-TC
61 GAGTTGAGCCTT-GGCTC
** **
6038826 ACA-TATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGC
1 ACACGCT-GAGGTATTTTCAATTTCTG--TTT----TTAA-----AAAAAATCAACTCATATTGC
6038890 GAGAGGTGAGTTGAGCCTTGGCTC
54 GAGAGGTGAGTTGAGCCTTGGCTC
** *
6038914 ACGTGCTGAGCTATTTTCAATTTCTGTTTTTAA
1 ACACGCTGAGGTATTTTCAATTTCTGTTTTTAA
6038947 TGTCTGTTTT
Statistics
Matches: 604, Mismatches: 96, Indels: 106
0.75 0.12 0.13
Matches are distributed among these distances:
72 24 0.04
73 7 0.01
74 41 0.07
75 67 0.11
76 23 0.04
77 70 0.12
78 76 0.13
79 63 0.10
80 2 0.00
81 37 0.06
82 4 0.01
83 35 0.06
84 2 0.00
85 1 0.00
86 14 0.02
87 2 0.00
88 115 0.19
89 13 0.02
90 1 0.00
91 7 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (77 bp):
ACACGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTTGGCTC
Found at i:6038759 original size:29 final size:30
Alignment explanation
Indices: 6038716--6038776 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
6038706 CAACTCATAT
6038716 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
6038746 TGCGA-AGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
6038775 TG
1 TG
6038777 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:6038846 original size:252 final size:246
Alignment explanation
Indices: 6038374--6038944 Score: 743
Period size: 252 Copynumber: 2.3 Consensus size: 246
6038364 TCTGTTGTCA
*
6038374 AAAAAATCAACT-AGTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
* *
6038438 -TT-T-TTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCATACA
65 TTTCTGTTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCATACA
* *
6038500 CTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTAAG
130 CTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTAAG
* * * **
6038565 CCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTTTGTTTTC
194 CCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAG-TTAAG-TTTC
* *
6038619 -AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
6038683 TTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTC-
66 TTCTGTTTTTTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTTAGA--TCA
* * * * * *
6038746 TGCGAAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGT
126 TAC--A-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGT
6038809 GAGTTGAA-CCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
186 GAGTT-AAGCC-TCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
6038870 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
6038935 TTCTGTTTTT
66 TTCTGTTTTT
6038945 AATGTCTGTT
Statistics
Matches: 287, Mismatches: 21, Indels: 29
0.85 0.06 0.09
Matches are distributed among these distances:
244 58 0.20
245 3 0.01
246 1 0.00
247 6 0.02
248 37 0.13
249 1 0.00
250 6 0.02
251 6 0.02
252 140 0.49
253 11 0.04
254 13 0.05
255 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (246 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCATACAC
TGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAGCC
TCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
Found at i:6039672 original size:27 final size:28
Alignment explanation
Indices: 6039597--6039675 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
6039587 TTAAGCCCCC
6039597 AAAAAAACCTAA-CCCAAAAAAAAAAGA
1 AAAAAAACCTAACCCCAAAAAAAAAAGA
*
6039624 AAAAAAACCTAACCCTAAAAAAAAAA-A
1 AAAAAAACCTAACCCCAAAAAAAAAAGA
* **
6039651 AGAAAAACCTAACCCCCCAAAAAAA
1 AAAAAAACCTAACCCCAAAAAAAAA
6039676 CTAAGAAACC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 34 0.74
28 12 0.26
ACGTcount: A:0.70, C:0.23, G:0.03, T:0.05
Consensus pattern (28 bp):
AAAAAAACCTAACCCCAAAAAAAAAAGA
Found at i:6039675 original size:30 final size:27
Alignment explanation
Indices: 6039597--6039665 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
6039587 TTAAGCCCCC
6039597 AAAAAAACCTAACCCAAAAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAAAAAGA
6039624 AAAAAAACCTAACCCTAAAAAAAAAA-A
1 AAAAAAACCTAACCC-AAAAAAAAAAGA
*
6039651 AGAAAAACCTAACCC
1 AAAAAAACCTAACCC
6039666 CCCAAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 30 0.75
28 10 0.25
ACGTcount: A:0.70, C:0.22, G:0.03, T:0.06
Consensus pattern (27 bp):
AAAAAAACCTAACCCAAAAAAAAAAGA
Found at i:6046851 original size:23 final size:25
Alignment explanation
Indices: 6046809--6046864 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 25
6046799 ACAATAATAT
6046809 TAATATAATAAATGTAATAGTGAT-AA
1 TAATATAATAAATG-AATAGT-ATGAA
6046835 TAATATAAT-AATG-ATAGTATGAA
1 TAATATAATAAATGAATAGTATGAA
6046858 TAATATA
1 TAATATA
6046865 TACAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.07
23 14 0.48
25 4 0.14
26 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.36
Consensus pattern (25 bp):
TAATATAATAAATGAATAGTATGAA
Found at i:6046891 original size:11 final size:11
Alignment explanation
Indices: 6046802--6046897 Score: 61
Period size: 11 Copynumber: 8.1 Consensus size: 11
6046792 AAAACACACA
*
6046802 ATAATATTAAT
1 ATAATAATAAT
6046813 ATAATAAATGTAAT
1 ATAAT-AA--TAAT
*
6046827 AGTGATAATAAT
1 A-TAATAATAAT
6046839 ATAATAATGATAGT
1 ATAATAAT-A-A-T
6046853 ATGAATAAT-AT
1 AT-AATAATAAT
* *
6046864 ATACA-AAAAAA
1 ATA-ATAATAAT
6046875 ATAATAATAAT
1 ATAATAATAAT
6046886 ATAATAATAAT
1 ATAATAATAAT
6046897 A
1 A
6046898 ACAATATTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
10 4 0.06
11 35 0.52
12 8 0.12
13 1 0.01
14 10 0.15
15 9 0.13
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:6046911 original size:17 final size:16
Alignment explanation
Indices: 6046872--6046911 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6046862 ATATACAAAA
*
6046872 AAAATAATAATAATAT
1 AAAATAATAACAATAT
6046888 AATAATAATAACAATATT
1 AA-AATAATAACAATA-T
6046906 AAAATA
1 AAAATA
6046912 CAAAAGCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 16 0.76
18 3 0.14
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATAATAACAATAT
Found at i:6046972 original size:2 final size:2
Alignment explanation
Indices: 6046965--6047000 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6046955 AAAACATTGC
6046965 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6047001 CACGTACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6047018 original size:17 final size:18
Alignment explanation
Indices: 6046996--6047033 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
6046986 ATATATATAT
6046996 ATATACACGT-ACATAA-A
1 ATATACAC-TAACATAATA
6047013 ATATACACTAACATAATA
1 ATATACACTAACATAATA
6047031 ATA
1 ATA
6047034 ATTATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 14 0.74
18 4 0.21
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (18 bp):
ATATACACTAACATAATA
Found at i:6047033 original size:3 final size:3
Alignment explanation
Indices: 6047025--6047076 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
6047015 ATACACTAAC
* ** *
6047025 ATA ATA ATA ATT ATA ATA ATA ATA GCA ATA ATA ATA ATTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
6047071 ATA ATA
1 ATA ATA
6047077 TATACACAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 38 0.95
4 2 0.05
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6047144 original size:22 final size:22
Alignment explanation
Indices: 6047099--6047151 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
6047089 GGTATTTAAA
***
6047099 AAAATAATTTTTTTTAATTTTTT
1 AAAATAA-TTTTTTTAAAAATTT
6047122 AAAATAATTTTTTTAAAAATTT
1 AAAATAATTTTTTTAAAAATTT
*
6047144 AAATTAAT
1 AAAATAAT
6047152 GTCGCTTGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
AAAATAATTTTTTTAAAAATTT
Found at i:6048515 original size:26 final size:26
Alignment explanation
Indices: 6048453--6048587 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
6048443 TGATACAAAT
*
6048453 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
6048478 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6048504 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6048530 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6048556 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6048582 TGATAA
1 TGATAA
6048588 GAATTTCATG
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 21 0.20
26 85 0.80
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6054327 original size:26 final size:25
Alignment explanation
Indices: 6054265--6054398 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 25
6054255 TGATACAAAT
*
6054265 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
*
6054290 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
6054316 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
6054341 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
6054367 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
6054393 TGATAA
1 TGATAA
6054399 GAATTTCATG
Statistics
Matches: 106, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
25 46 0.43
26 60 0.57
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:6054328 original size:51 final size:51
Alignment explanation
Indices: 6054265--6054398 Score: 232
Period size: 51 Copynumber: 2.6 Consensus size: 51
6054255 TGATACAAAT
*
6054265 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
* *
6054316 TGATAATGGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
6054367 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATGGGTTAGGTAAATG-TTCATGATAA
6054399 GAATTTCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 69 0.87
52 10 0.13
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:6057857 original size:3 final size:3
Alignment explanation
Indices: 6057849--6057874 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6057839 GAGTGACACG
6057849 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
6057875 CATTCTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:6058379 original size:3 final size:3
Alignment explanation
Indices: 6058371--6058398 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6058361 GCATTAATTG
6058371 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6058399 TTGTTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:6062522 original size:28 final size:28
Alignment explanation
Indices: 6062482--6062537 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
6062472 TCCATCCCCA
*
6062482 TTGTCTATTGAAATCGCTTTGAATAATC
1 TTGTCCATTGAAATCGCTTTGAATAATC
6062510 TTGTCCATTGAAATCGCTTTGAATAATC
1 TTGTCCATTGAAATCGCTTTGAATAATC
6062538 CTCCTTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (28 bp):
TTGTCCATTGAAATCGCTTTGAATAATC
Found at i:6064214 original size:26 final size:26
Alignment explanation
Indices: 6064177--6064260 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
6064167 TGATACAAAT
* *
6064177 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6064203 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6064229 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6064255 TGATAA
1 TGATAA
6064261 GAATTTGATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6069072 original size:2 final size:2
Alignment explanation
Indices: 6069065--6069101 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6069055 GTAATCAAAC
6069065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6069102 CATGCTGTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6071645 original size:29 final size:30
Alignment explanation
Indices: 6071603--6071661 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
6071593 TATGGTTTAA
6071603 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* * *
6071632 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
6071662 GATCCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:6073963 original size:3 final size:3
Alignment explanation
Indices: 6073955--6074012 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
6073945 AACTTTAGGT
6073955 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6074003 ATA ATA ATA A
1 ATA ATA ATA A
6074013 AGAAGAAGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6074021 original size:6 final size:6
Alignment explanation
Indices: 6074016--6074107 Score: 85
Period size: 6 Copynumber: 15.3 Consensus size: 6
6074006 ATAATAAAGA
* * * *
6074016 AGAAGA AGAAGA AGGAGG AGAATG AGAAGG AGAAGG AGAAGG AGAAGG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG
* * * * * * *
6074064 AGAAGC AAAAAG AGAAGC AGAAGC AGAAGC AGAAGG AGGAGG AG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AG
6074108 GAGGTCCAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 72 1.00
ACGTcount: A:0.52, C:0.04, G:0.42, T:0.01
Consensus pattern (6 bp):
AGAAGG
Found at i:6074215 original size:21 final size:21
Alignment explanation
Indices: 6074189--6074255 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
6074179 AATAAGGAGA
* *
6074189 AGGAGAAGGAGAATGAGAAGC
1 AGGAGAAGAAGAAGGAGAAGC
*
6074210 AGGAGAAGAAGAAGGAGAA-A
1 AGGAGAAGAAGAAGGAGAAGC
* * * *
6074230 AGAATAAGTAGAAGGAGAAGA
1 AGGAGAAGAAGAAGGAGAAGC
6074251 AGGAG
1 AGGAG
6074256 GAGGAGGTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 16 0.43
21 21 0.57
ACGTcount: A:0.54, C:0.01, G:0.40, T:0.04
Consensus pattern (21 bp):
AGGAGAAGAAGAAGGAGAAGC
Found at i:6074242 original size:14 final size:14
Alignment explanation
Indices: 6074192--6074255 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 14
6074182 AAGGAGAAGG
*
6074192 AGAAGGAGAATGAGA
1 AGAAGGAGAA-AAGA
*
6074207 AGCAGGAG--AAGA
1 AGAAGGAGAAAAGA
6074219 AGAAGGAGAAAAGA
1 AGAAGGAGAAAAGA
* * *
6074233 ATAAGTAGAAGGAGA
1 AGAAGGAGAA-AAGA
6074248 AGAAGGAG
1 AGAAGGAG
6074256 GAGGAGGTCC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
12 10 0.26
14 12 0.32
15 16 0.42
ACGTcount: A:0.55, C:0.02, G:0.39, T:0.05
Consensus pattern (14 bp):
AGAAGGAGAAAAGA
Found at i:6074306 original size:151 final size:152
Alignment explanation
Indices: 6074031--6074311 Score: 420
Period size: 151 Copynumber: 1.9 Consensus size: 152
6074021 AAGAAGAAGG
* * * * *
6074031 AGGAGAATGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGCAAAAAGAGAAGCAGAAGCAGAAGCAG
1 AGGAGAAGGAGAAGGAGAAGGAGAAGCAGAAGAAGAAGCAAAAAGAAAAGAAGAAGCAGAAGCAG
* *
6074096 AAGGAGGAGGAGGAGGTCCAAAAGGCTTCCTTGGGCAAGAAATATCTTTATTATCCTTTTCTTTT
66 AAGAAGGAGGAGGAGGTCCAAAAGGCTCCCTTGGGCAAGAAATATCTTTATTATCCTTTTCTTTT
6074161 CTTTTTCATAATAATAATAATA
131 CTTTTTCATAATAATAATAATA
* * ** * * *
6074183 AGGAGAAGGAGAAGGAGAATGAGAAGCAGGAGAAGAAG-AAGGAGAAAAGAATAAGTAGAAGGAG
1 AGGAGAAGGAGAAGGAGAAGGAGAAGCAGAAGAAGAAGCAAAAAGAAAAGAAGAAGCAGAAGCAG
*
6074247 AAGAAGGAGGAGGAGGTCCAAAAGGCTCCCTTGGGCAGGAAATATCTTTATTATCCTTTTCTTTT
66 AAGAAGGAGGAGGAGGTCCAAAAGGCTCCCTTGGGCAAGAAATATCTTTATTATCCTTTTCTTTT
6074312 TCATAATAAT
Statistics
Matches: 114, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
151 81 0.71
152 33 0.29
ACGTcount: A:0.41, C:0.10, G:0.30, T:0.20
Consensus pattern (152 bp):
AGGAGAAGGAGAAGGAGAAGGAGAAGCAGAAGAAGAAGCAAAAAGAAAAGAAGAAGCAGAAGCAG
AAGAAGGAGGAGGAGGTCCAAAAGGCTCCCTTGGGCAAGAAATATCTTTATTATCCTTTTCTTTT
CTTTTTCATAATAATAATAATA
Found at i:6074638 original size:2 final size:2
Alignment explanation
Indices: 6074631--6074659 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6074621 TTATGTTTAA
6074631 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6074660 AAACCAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6076866 original size:32 final size:33
Alignment explanation
Indices: 6076783--6077001 Score: 124
Period size: 33 Copynumber: 6.7 Consensus size: 33
6076773 GTACATTCCT
** *
6076783 TTTTCAAGTAGTACACATGAAGTGTACATACCC
1 TTTTCAAGTAGTACACACAAAGTGTACATAACC
* * *
6076816 TTTTCAATTTGTACACACAAAGTGCACATAACC
1 TTTTCAAGTAGTACACACAAAGTGTACATAACC
* * * **
6076849 TTTTCAAGT-GTACACACATAGTGTTCCTTTCC
1 TTTTCAAGTAGTACACACAAAGTGTACATAACC
* * * * *
6076881 TTTTCAAGTGGTATACACAAAGTATACCCT-TCC
1 TTTTCAAGTAGTACACACAAAGTGTA-CATAACC
* * * * **
6076914 TTTTTATA-TGGTATACACAAAGTATACCCAACC
1 TTTTCA-AGTAGTACACACAAAGTGTACATAACC
* * * *
6076947 TTTCCAAGT-GCACACACATAGTGTACATAGCC
1 TTTTCAAGTAGTACACACAAAGTGTACATAACC
* *
6076979 TTTTCATA-TGGTATACACAAAGT
1 TTTTCA-AGTAGTACACACAAAGT
6077002 ATACCTTTCC
Statistics
Matches: 146, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
32 51 0.35
33 91 0.62
34 4 0.03
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (33 bp):
TTTTCAAGTAGTACACACAAAGTGTACATAACC
Found at i:6076916 original size:98 final size:99
Alignment explanation
Indices: 6076814--6077017 Score: 252
Period size: 98 Copynumber: 2.1 Consensus size: 99
6076804 GTGTACATAC
* * * * * * * *
6076814 CCTTTTCAAT-TTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACACACATAGTGTTCCTT
1 CCTTTTCAATATGGTACACACAAAGTACACACAACCTTTCCAAGTGCACACACATAGTGTACATA
*
6076878 TCCTTTTCA-AGTGGTATACACAAAGTATACCCTT
66 GCCTTTTCATA-TGGTATACACAAAGTATACCCTT
* * * *
6076912 CCTTTT-TATATGGTATACACAAAGTATACCCAACCTTTCCAAGTGCACACACATAGTGTACATA
1 CCTTTTCAATATGGTACACACAAAGTACACACAACCTTTCCAAGTGCACACACATAGTGTACATA
*
6076976 GCCTTTTCATATGGTATACACAAAGTATACCTTT
66 GCCTTTTCATATGGTATACACAAAGTATACCCTT
6077010 CCTTTTCA
1 CCTTTTCA
6077018 TATTCGATAG
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
97 2 0.02
98 85 0.97
99 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (99 bp):
CCTTTTCAATATGGTACACACAAAGTACACACAACCTTTCCAAGTGCACACACATAGTGTACATA
GCCTTTTCATATGGTATACACAAAGTATACCCTT
Found at i:6077014 original size:33 final size:33
Alignment explanation
Indices: 6076874--6077020 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 33
6076864 ACATAGTGTT
6076874 CCTTTCCTTTTCA-AGTGGTATACACAAAGTATA
1 CCTTTCCTTTTCATA-TGGTATACACAAAGTATA
* *
6076907 CCCTTCCTTTTTATATGGTATACACAAAGTATA
1 CCTTTCCTTTTCATATGGTATACACAAAGTATA
*** * * * * *
6076940 CCCAACCTTTCCA-A-GTGCACACACATAGTGTA
1 CCTTTCCTTTTCATATG-GTATACACAAAGTATA
* **
6076972 CATAGCCTTTTCATATGGTATACACAAAGTATA
1 CCTTTCCTTTTCATATGGTATACACAAAGTATA
6077005 CCTTTCCTTTTCATAT
1 CCTTTCCTTTTCATAT
6077021 TCGATAGCCG
Statistics
Matches: 89, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
31 1 0.01
32 22 0.25
33 64 0.72
34 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.35
Consensus pattern (33 bp):
CCTTTCCTTTTCATATGGTATACACAAAGTATA
Found at i:6077751 original size:20 final size:22
Alignment explanation
Indices: 6077709--6077756 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
6077699 TGTAAAAGTG
*
6077709 ATTTATCTATCAATAATCTTTC
1 ATTTATCTATCAATAAACTTTC
6077731 ATTT-TCTATCAA-AAACTTTC
1 ATTTATCTATCAATAAACTTTC
6077751 AATTTA
1 -ATTTA
6077757 CAGCATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATCTATCAATAAACTTTC
Found at i:6084148 original size:14 final size:14
Alignment explanation
Indices: 6084131--6084163 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6084121 ATATTATATT
6084131 AATTAAATAAAGTA
1 AATTAAATAAAGTA
*
6084145 AATTAAATAAATTA
1 AATTAAATAAAGTA
6084159 AATTA
1 AATTA
6084164 TGACAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AATTAAATAAAGTA
Found at i:6084501 original size:21 final size:21
Alignment explanation
Indices: 6084461--6084506 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
6084451 ATGTTGAATT
6084461 AATTGATGAATTAAAGGTTA-
1 AATTGATGAATTAAAGGTTAG
*
6084481 AATTGATAGAATTTCAA-GTTAG
1 AATTGAT-GAA-TTAAAGGTTAG
6084503 AATT
1 AATT
6084507 AGGTAAAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.32
21 7 0.32
22 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.37
Consensus pattern (21 bp):
AATTGATGAATTAAAGGTTAG
Found at i:6085218 original size:40 final size:41
Alignment explanation
Indices: 6085162--6085277 Score: 146
Period size: 40 Copynumber: 2.9 Consensus size: 41
6085152 CCTTCTCGAG
6085162 AATTAAAAGTGAATAGGATTTATTCCTGATTCACTA-AAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTAGAAAGA
* *
6085203 AATTAAAGTGAATAGGATTTATTCTTGATTCACTAGAAATA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAAGA
* * * * *
6085244 TATT-AATTGGATTGGATTTGTTCCTGATTCACTA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTA
6085278 TGGTAACTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 55 0.83
41 11 0.17
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (41 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAAGA
Found at i:6090335 original size:55 final size:50
Alignment explanation
Indices: 6090194--6090380 Score: 223
Period size: 50 Copynumber: 3.7 Consensus size: 50
6090184 CGATAACTTC
* *
6090194 GATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 GATCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
*
6090244 GATCGCGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTTA
1 GATCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * **
6090294 GGTCACGTGTGTTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-
1 GAT--C--GCG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* *
6090348 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GATCGCGTGTGTAGTACTAAGTGCAGGCTACTA
6090381 TGCGTACCAG
Statistics
Matches: 120, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
49 26 0.22
50 50 0.42
52 2 0.02
54 5 0.04
55 37 0.31
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
GATCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
Found at i:6093990 original size:41 final size:41
Alignment explanation
Indices: 6093912--6093990 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
6093902 GACTTATCTA
* *
6093912 ACACGGCCATACCACACGCCCGTGTCTAGCCCGTGTGGCTC
1 ACACGGCCATACCACACGCCCGTGTCAAGCCCATGTGGCTC
*
6093953 ACACGGCCAT-CAGACACGCCCGTGTCCAAG-CCATGTGG
1 ACACGGCCATAC-CACACGCCCGTGT-CAAGCCCATGTGG
6093991 AAATAGGGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 1 0.03
41 29 0.88
42 3 0.09
ACGTcount: A:0.20, C:0.39, G:0.25, T:0.15
Consensus pattern (41 bp):
ACACGGCCATACCACACGCCCGTGTCAAGCCCATGTGGCTC
Found at i:6101146 original size:52 final size:52
Alignment explanation
Indices: 6101084--6101188 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
6101074 AAAAGGATAA
6101084 TGGTGTGACTGAGAATATGATGAAAAGAAGAAACACCGAAGCTGTTGTGGTT
1 TGGTGTGACTGAGAATATGATGAAAAGAAGAAACACCGAAGCTGTTGTGGTT
6101136 TGGTGTGACTGAGAATATGATGAAAAGAAGAAACACCGAAGCTGTTGTGGTT
1 TGGTGTGACTGAGAATATGATGAAAAGAAGAAACACCGAAGCTGTTGTGGTT
6101188 T
1 T
6101189 TCATGGTTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (52 bp):
TGGTGTGACTGAGAATATGATGAAAAGAAGAAACACCGAAGCTGTTGTGGTT
Found at i:6101406 original size:19 final size:19
Alignment explanation
Indices: 6101382--6101421 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
6101372 TAAATGAATG
6101382 TCGAAAATTGGAAATAAAT
1 TCGAAAATTGGAAATAAAT
6101401 TCGAAAATTGGAAATAAAT
1 TCGAAAATTGGAAATAAAT
6101420 TC
1 TC
6101422 AATCAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.28
Consensus pattern (19 bp):
TCGAAAATTGGAAATAAAT
Found at i:6103418 original size:3 final size:3
Alignment explanation
Indices: 6103405--6103495 Score: 68
Period size: 3 Copynumber: 30.3 Consensus size: 3
6103395 GAGGGCATAT
6103405 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
6103449 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A-A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6103492 ATA A
1 ATA A
6103496 AGCTCTCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
2 11 0.15
3 50 0.69
4 9 0.12
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6103449 original size:21 final size:18
Alignment explanation
Indices: 6103410--6103494 Score: 77
Period size: 18 Copynumber: 4.7 Consensus size: 18
6103400 CATATATAAT
*
6103410 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
6103428 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
6103449 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
6103467 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
6103484 ATAATAA-AATA
1 ATAATAATAATA
6103495 AAGCTCTCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.07
17 8 0.14
18 24 0.41
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:6103478 original size:27 final size:27
Alignment explanation
Indices: 6103405--6103491 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
6103395 GAGGGCATAT
* *
6103405 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
6103431 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
6103455 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
6103482 A-AATAATAAA
1 ATAAT-ATAAA
6103492 ATAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:6103822 original size:25 final size:26
Alignment explanation
Indices: 6103790--6103841 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6103780 AAAAACTAGC
*
6103790 CTTTCC-AAGAAACAAAAACAAC-CTT
1 CTTTCCAAAAAAACAAAAA-AACACTT
6103815 CTTTCCAAAAAAACAAAAAAACACTT
1 CTTTCCAAAAAAACAAAAAAACACTT
6103841 C
1 C
6103842 CAAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAACACTT
Found at i:6103846 original size:21 final size:22
Alignment explanation
Indices: 6103817--6103857 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
6103807 ACAACCTTCT
6103817 TTCCAAAAAAACAAAAAAACAC
1 TTCCAAAAAAACAAAAAAACAC
*
6103839 TTCC-AAAAAATAAAAAAAC
1 TTCCAAAAAAACAAAAAAAC
6103858 CTCCTCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.68, C:0.20, G:0.00, T:0.12
Consensus pattern (22 bp):
TTCCAAAAAAACAAAAAAACAC
Found at i:6104644 original size:176 final size:176
Alignment explanation
Indices: 6104347--6105276 Score: 970
Period size: 176 Copynumber: 5.3 Consensus size: 176
6104337 GATATCCGCT
* * *
6104347 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
* * * * *
6104412 AAGCACAGGGATGCCAAATTTGATGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCAAATCT
66 AAGCACAGGGATGCCAAATCTGATATTTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCT
6104477 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* *
6104523 ATCTTTGATCTGCTTCACTGTAAGCACGGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
*
6104588 AAGCACAGGGATGCCAAATCTGTTATCTTT-GATTTGTTCCCTATAAGCACAGGGATGCCAAATC
66 AAGCACAGGGATGCCAAATCTGATAT-TTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATC
6104652 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
130 TGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* *
6104699 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTTCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
* * * * *
6104764 AAGTACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGC
66 AAGCACAGGGATGCCAAATCTGATATTTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAAT-C
** * * * * * * **
6104827 TGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCT
130 TGATGTTTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCATG--CTGAA
* * * * * * * * * *
6104876 ATCTTCGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTGT-TTTCAACTTGTTCCCTA
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTT-GATTTGTTCCCTA
* * * * * * * *
6104939 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA
65 TAAGCACAGGGATGCCAAAT-CTGATATTTTCGATTTG-TTCCCTATAAGCACAGGGATGCCAAA
* * * * * * **
6105002 TCTGCTATCTTCGATTTGTTCCCTATAAGCACAAGGATGCCAAAT-CTGCT
128 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * ** * *
6105052 GT-TTTCAACTTG-TTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCAC
1 ATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CTGCTATCTTTGATTTG-TTCCC
* * * * * *
6105113 TGTAAGCATAGGAATGTCAGATCTGCTATTTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAA
63 TATAAGCACAGGGATGCCAAATCTGATATTTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAA
* *
6105178 TCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTGAA
128 TCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
*
6105227 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
6105277 CGGTCTGCTC
Statistics
Matches: 622, Mismatches: 105, Indels: 53
0.80 0.13 0.07
Matches are distributed among these distances:
174 9 0.01
175 44 0.07
176 510 0.82
177 51 0.08
178 8 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (176 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATATTTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCT
GATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:6104679 original size:132 final size:132
Alignment explanation
Indices: 6104568--6105278 Score: 1253
Period size: 132 Copynumber: 5.4 Consensus size: 132
6104558 CAGATCTGTT
* * * * * * * *
6104568 ATCTTTGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
6104632 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
6104697 AA
131 AA
*
6104699 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTTCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
6104764 AAGTACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
6104829 AA
131 AA
*
6104831 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
6104896 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
6104961 AA
131 AA
*
6104963 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
6105028 AAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
6105093 AA
131 AA
* *
6105095 ATCTTTGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATTTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
6105160 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
6105225 AA
131 AA
*
6105227 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
6105279 GTCTGCTCCT
Statistics
Matches: 556, Mismatches: 23, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 11 0.02
132 545 0.98
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:6105416 original size:68 final size:68
Alignment explanation
Indices: 6105331--6105519 Score: 263
Period size: 68 Copynumber: 2.8 Consensus size: 68
6105321 TCTTCTTTCA
* * * ** * *
6105331 CTGAAACTTCTAGGAGATCTGCTGTGACTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAAGAAGAAAAGAT
*
6105396 -TT
66 CCT
* *
6105398 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAAGAAGAAAAGA
6105463 TCCT
65 TCCT
*
6105467 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCAGCTCCAATGCCATTTCA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCA
6105520 GGGAAAAAGA
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
68 106 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAAGAAGAAAAGAT
CCT
Found at i:6105692 original size:45 final size:45
Alignment explanation
Indices: 6105601--6105838 Score: 238
Period size: 45 Copynumber: 5.4 Consensus size: 45
6105591 CTATTTCCCA
* *
6105601 ACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * *
6105644 ACTGGTTAGGGGGTTAAAATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* * * * *
6105689 ACTGCTTAGGGGTTTAAGGTTTGTAAA--TTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* ** * * *
6105732 ACTGCTTAGGGGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCT
*
6105776 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
* *
6105821 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGGGTTAAG
6105839 GCTTGTGAAT
Statistics
Matches: 158, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 54 0.34
44 28 0.18
45 72 0.46
46 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (45 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
Found at i:6105693 original size:88 final size:87
Alignment explanation
Indices: 6105534--6105837 Score: 288
Period size: 88 Copynumber: 3.4 Consensus size: 87
6105524 AAAAGAAATT
* * * ** * * * *
6105534 TGTAATTTCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCC
1 TGTAAATT-CAGCCTGTTACCCTACTGCTTAGGGGGTTAAAACCCATAATCTTCGACCTGTTACC
*
6105599 CAACTGCTTAAGGGGTTAAGATC
65 CTACTGCTTAAGGGGTTAAGATC
* * ****
6105622 TGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAAATTTGTAAATCTTC-AGCCTGTTAC
1 TGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAACCCAT-AATCTTCGA-CCTGTTAC
* *
6105686 CCTACTGCTT-AGGGGTTTAAGGTT
64 CCTACTGCTTAAGGGG-TTAAGATC
* * * * * *
6105710 TGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCC
1 TGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAACCCATAATCTTCGACCTGTTACCC
*
6105775 TACTGCTTAGGGGGTTAAGATC
66 TACTGCTTAAGGGGTTAAGATC
* * *
6105797 TGTAAATCTTCAGTCTGTTACCCTATTGCTTAGGGGCTTAA
1 TGTAAA--TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA
6105838 GGCTTGTGAA
Statistics
Matches: 171, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
87 68 0.40
88 75 0.44
89 28 0.16
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (87 bp):
TGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAACCCATAATCTTCGACCTGTTACCC
TACTGCTTAAGGGGTTAAGATC
Found at i:6106008 original size:66 final size:66
Alignment explanation
Indices: 6105902--6106028 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
6105892 TCTATGCTTA
*
6105902 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
6105967 G
66 G
*
6105968 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
6106029 TATATGAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:6107173 original size:1 final size:1
Alignment explanation
Indices: 6107169--6107214 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
6107159 TTTTTTAGAA
* * * *
6107169 TTTTTTTTTTTTTTTTTGTGTTTTTGTGTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6107215 GCCTTTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:6110046 original size:19 final size:20
Alignment explanation
Indices: 6110022--6110068 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
6110012 AGTGAAAGTT
6110022 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
6110041 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
6110061 -AATGCAAA
1 TAATGCAAA
6110069 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:6112776 original size:3 final size:3
Alignment explanation
Indices: 6112763--6112853 Score: 68
Period size: 3 Copynumber: 30.3 Consensus size: 3
6112753 GAGGGCATAT
6112763 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
6112807 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A-A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6112850 ATA A
1 ATA A
6112854 AGCTCTCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
2 11 0.15
3 50 0.69
4 9 0.12
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6112807 original size:21 final size:18
Alignment explanation
Indices: 6112768--6112852 Score: 77
Period size: 18 Copynumber: 4.7 Consensus size: 18
6112758 CATATATAAT
*
6112768 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
6112786 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
6112807 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
6112825 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
6112842 ATAATAA-AATA
1 ATAATAATAATA
6112853 AAGCTCTCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.07
17 8 0.14
18 24 0.41
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:6112836 original size:27 final size:27
Alignment explanation
Indices: 6112763--6112849 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
6112753 GAGGGCATAT
* *
6112763 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
6112789 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
6112813 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
6112840 A-AATAATAAA
1 ATAAT-ATAAA
6112850 ATAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:6113179 original size:25 final size:26
Alignment explanation
Indices: 6113147--6113198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6113137 AAAAACTAGC
*
6113147 CTTTCC-AAGAAACAAAAACAAC-CTT
1 CTTTCCAAAAAAACAAAAA-AACACTT
6113172 CTTTCCAAAAAAACAAAAAAACACTT
1 CTTTCCAAAAAAACAAAAAAACACTT
6113198 C
1 C
6113199 CAAAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAACACTT
Found at i:6113221 original size:21 final size:22
Alignment explanation
Indices: 6113175--6113269 Score: 86
Period size: 21 Copynumber: 4.4 Consensus size: 22
6113165 CAACCTTCTT
* * *
6113175 TCCAAAAAAACAAAAAAACACT
1 TCCAAAAAAACAAAAAACCTCC
6113197 TCCAAAAAAA-AAAAAACCTCC
1 TCCAAAAAAACAAAAAACCTCC
* * *
6113218 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAA-AAACAAAAAACCTCC
* *
6113241 TCC-AAAAAACCAAAAACCCCC
1 TCCAAAAAAACAAAAAACCTCC
*
6113262 TCCTAAAA
1 TCCAAAAA
6113270 CAAAGTCTTG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
21 28 0.47
22 20 0.33
23 12 0.20
ACGTcount: A:0.57, C:0.32, G:0.01, T:0.11
Consensus pattern (22 bp):
TCCAAAAAAACAAAAAACCTCC
Found at i:6124883 original size:33 final size:32
Alignment explanation
Indices: 6124841--6124905 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
6124831 TAAGTGGAGT
* *
6124841 TTGAGTTTGATGTGTTGTTACTTTTTTGGTTG
1 TTGAGTTTGATGGGCTGTTACTTTTTTGGTTG
*
6124873 TTGATGTTTGATGGGCTGTTATTTTTTTGGTTG
1 TTGA-GTTTGATGGGCTGTTACTTTTTTGGTTG
6124906 ATGGTTATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.09, C:0.03, G:0.29, T:0.58
Consensus pattern (32 bp):
TTGAGTTTGATGGGCTGTTACTTTTTTGGTTG
Found at i:6138511 original size:52 final size:52
Alignment explanation
Indices: 6138428--6138586 Score: 155
Period size: 52 Copynumber: 3.1 Consensus size: 52
6138418 CAGATCACAT
* **
6138428 ATCATACCGATGCCATATCCCAAATATGGTCTTATACGGAATCACATTATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-CACATTATCAC
* * *
6138481 ATCACACCGATG-CATAGCCCAGCTATGGTCTTATGCGGGAACGCGA--ATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAACAC-ATTATCAC
** * * *
6138532 ATTGTACCGATGCCATAGCTCGGCTATGGTCTTATACAGAA-ACATATATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAACACAT-TATCAC
6138584 ATC
1 ATC
6138587 TTTTCTGTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 17 0.20
52 50 0.59
53 16 0.19
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (52 bp):
ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAACACATTATCAC
Found at i:6144549 original size:20 final size:20
Alignment explanation
Indices: 6144515--6144564 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
6144505 TTTTGTTTGA
*
6144515 TATTTTGAA-TTTTAAAATT
1 TATTTTGAATTTTTAAAAAT
*
6144534 TATTTTAAATTTTTAAAAAT
1 TATTTTGAATTTTTAAAAAT
6144554 TATTTTGAATT
1 TATTTTGAATT
6144565 ATTTTGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TATTTTGAATTTTTAAAAAT
Found at i:6152707 original size:15 final size:15
Alignment explanation
Indices: 6152687--6152734 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
6152677 TAACATTATT
6152687 TATTATCATATTTAC
1 TATTATCATATTTAC
*
6152702 TATTATTAT-TATTAC
1 TATTATCATAT-TTAC
6152717 TATTA-C-TA-TTAC
1 TATTATCATATTTAC
6152729 TATTAT
1 TATTAT
6152735 ATTTAGCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 9 0.32
13 1 0.04
14 1 0.04
15 17 0.61
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTATCATATTTAC
Done.