Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 224 of 444
Found at i:62956232 original size:27 final size:27
Alignment explanation
Indices: 62956202--62956254 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
62956192 ATTTAATTGA
62956202 GGTGCATTAGTTCATTGCTAGTGCTTG
1 GGTGCATTAGTTCATTGCTAGTGCTTG
*
62956229 GGTGCATTAGTTCATTTCTAGTGCTT
1 GGTGCATTAGTTCATTGCTAGTGCTT
62956255 AGGCATTGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.43
Consensus pattern (27 bp):
GGTGCATTAGTTCATTGCTAGTGCTTG
Found at i:62962716 original size:13 final size:13
Alignment explanation
Indices: 62962698--62962728 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
62962688 GATTGTGTGA
62962698 AAATTTCGTGATG
1 AAATTTCGTGATG
62962711 AAATTTCGTGATG
1 AAATTTCGTGATG
62962724 AAATT
1 AAATT
62962729 CTATGCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (13 bp):
AAATTTCGTGATG
Found at i:62973967 original size:23 final size:21
Alignment explanation
Indices: 62973939--62974010 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 21
62973929 CTTGTAATAC
62973939 TTATTATATTATTATTATAGATT
1 TTATTATATTATT-TTATA-ATT
*
62973962 TTATTATA-TATTTTATATTAT
1 TTATTATATTATTTTATAAT-T
*
62973983 TTATTATATGATTTGTATATATT
1 TTATTATATTATTT-TATA-ATT
62974006 TTATT
1 TTATT
62974011 TGTAAATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 8 0.19
23 18 0.43
24 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTATTATATTATTTTATAATT
Found at i:62973981 original size:32 final size:32
Alignment explanation
Indices: 62973942--62974009 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 32
62973932 GTAATACTTA
*
62973942 TTATATTA-TTATTATA-GATTTTATTATATATT
1 TTATATTATTTATTATATGA-TTT-GTATATATT
62973974 TTATATTATTTATTATATGATTTGTATATATT
1 TTATATTATTTATTATATGATTTGTATATATT
62974006 TTAT
1 TTAT
62974010 TTGTAAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 20 0.61
33 11 0.33
34 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (32 bp):
TTATATTATTTATTATATGATTTGTATATATT
Found at i:62973985 original size:21 final size:20
Alignment explanation
Indices: 62973939--62974006 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 20
62973929 CTTGTAATAC
*
62973939 TTATTATATTATTATTATAGATT
1 TTATTATA-TATT-TTATATA-T
62973962 TTATTATATATTTTATATTAT
1 TTATTATATATTTTATA-TAT
62973983 TTATTATATGATTTGTATATAT
1 TTATTATAT-ATTT-TATATAT
62974005 TT
1 TT
62974007 TATTTGTAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
21 15 0.37
22 14 0.34
23 12 0.29
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
TTATTATATATTTTATATAT
Found at i:62973989 original size:12 final size:12
Alignment explanation
Indices: 62973939--62973996 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
62973929 CTTGTAATAC
62973939 TTATTATATTA-
1 TTATTATATTAT
*
62973950 TTATTATA-GATT
1 TTATTATATTA-T
62973962 TTATTATA-TA-
1 TTATTATATTAT
62973972 TT-TTATATTAT
1 TTATTATATTAT
*
62973983 TTATTATATGAT
1 TTATTATATTAT
62973995 TT
1 TT
62973997 GTATATATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
9 5 0.13
10 5 0.13
11 10 0.26
12 19 0.49
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (12 bp):
TTATTATATTAT
Found at i:62981636 original size:29 final size:29
Alignment explanation
Indices: 62981596--62981669 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
62981586 GTTGAGAGAT
*
62981596 TGGCAC-AGAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTA-AGTGTGCGAG-TTGAAAGTACA
* *
62981625 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
62981654 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62981670 CGGCTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 5 0.12
29 34 0.85
30 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:62989495 original size:29 final size:29
Alignment explanation
Indices: 62989462--62989564 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62989452 GTTGAGAGAT
*
62989462 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
62989491 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
62989520 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
62989549 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62989565 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:62993045 original size:47 final size:47
Alignment explanation
Indices: 62992981--62993150 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
62992971 GCTGCGAATG
62992981 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
62993028 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--ACGC-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
* *
62993075 -CCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
62993121 TTCGAGCTTGTTGAGTTGAGTCCGAGTTCG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
62993151 CTTATGGGCA
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 27 0.26
47 53 0.52
48 5 0.05
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:62993091 original size:93 final size:93
Alignment explanation
Indices: 62992932--62993157 Score: 337
Period size: 93 Copynumber: 2.4 Consensus size: 93
62992922 GGATATTTGA
* * * * * *
62992932 GCATCCAAGCTCGTTGAGTTGAAG-CCGAGTTCACTTATGGCTGCGAATGTCCGAGCTCGTTGAG
1 GCATCCGAGCTCGTTGAGTTG-AGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
62992996 TTGAGTCCGAGTTCGTGAGATGTAACTAG
65 TTGAGTCCGAGTTCGTGAGATGTAACTAG
*
62993025 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
62993090 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
62993118 GCATTCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62993158 GCAGGTTACA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.02
93 118 0.98
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62993096 original size:46 final size:46
Alignment explanation
Indices: 62992939--62993102 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
62992929 TGAGCATCCA
* * * *
62992939 AGCTCGTTGAGTTGAAG-CCGAGTTCACTTATGGCTGCGAATGTCCG
1 AGCTCGTTGAGTTG-AGTCCGAGTTCACTTATGGATGCAAACGCCCG
* * * *
62992985 AGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC--CCG
*
62993032 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
* *
62993078 AACTCGTTGAGTTGAGTCTGAGTTC
1 AGCTCGTTGAGTTGAGTCCGAGTTC
62993103 GTGAGATGTA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
43 4 0.04
45 6 0.06
46 49 0.51
47 27 0.28
48 5 0.05
50 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
Found at i:62996427 original size:26 final size:27
Alignment explanation
Indices: 62996398--62996450 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
62996388 AACAGCTAAT
*
62996398 AATT-TGTTCTAAACTAGACACATTAA
1 AATTATGTCCTAAACTAGACACATTAA
*
62996424 AATTATGTCCTAAACTAGACATATTAA
1 AATTATGTCCTAAACTAGACACATTAA
62996451 TATTGTAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (27 bp):
AATTATGTCCTAAACTAGACACATTAA
Found at i:62997177 original size:14 final size:11
Alignment explanation
Indices: 62997146--62997176 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
62997136 TTAGCTGATT
62997146 CCTTCTTCTAC
1 CCTTCTTCTAC
62997157 CCTTCTTCTAC
1 CCTTCTTCTAC
62997168 CCTTCTTCT
1 CCTTCTTCT
62997177 TTAATTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.45, G:0.00, T:0.48
Consensus pattern (11 bp):
CCTTCTTCTAC
Found at i:62997675 original size:16 final size:16
Alignment explanation
Indices: 62997654--62997699 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
62997644 GTAGATTAGC
*
62997654 AAAAGCCGAAATGTCA
1 AAAAGCCGAAATGCCA
*
62997670 AAAAGCCAAAATGCCA
1 AAAAGCCGAAATGCCA
62997686 AAAAGCCGAAATGC
1 AAAAGCCGAAATGC
62997700 GGAAAAGTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.52, C:0.22, G:0.17, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:63000845 original size:48 final size:48
Alignment explanation
Indices: 63000724--63000904 Score: 158
Period size: 48 Copynumber: 3.9 Consensus size: 48
63000714 TACACAGTAA
* * * **
63000724 GATGCCAATGCCATATCCCAGATTTGGTCTTACATGGGATCATAGGTC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATC
* ** * * **
63000772 GAAG-C--TG--ATAGGCCAGCTATGGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACG-GGATCAAATATC
*
63000815 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCAAATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATC
* * * *
63000863 GATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATCA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCA
63000905 CACATAACCC
Statistics
Matches: 104, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 27 0.26
44 2 0.02
45 2 0.02
46 2 0.02
47 2 0.02
48 69 0.66
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATC
Found at i:63008723 original size:48 final size:48
Alignment explanation
Indices: 63008671--63008811 Score: 210
Period size: 48 Copynumber: 2.9 Consensus size: 48
63008661 ACGATGTCTC
* * * *
63008671 ATATCGATGCTAATGCCATATCCCATATATGGTCTTACATGGGATCAA
1 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAA
* * *
63008719 ATATCGATGCCAATGCCATGTCACAAACATGGTCTTACATGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAA
*
63008767 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
1 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT
63008812 TACACATAAC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAA
Found at i:63012618 original size:46 final size:46
Alignment explanation
Indices: 63012551--63012720 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
63012541 TGTAACCCGC
* * *
63012551 CCATAAGCGAACTCGAACTCAACTCAATGAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * * *
63012597 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * *
63012647 -C-TCA-TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
63012690 CCATAAGTGAACTCGGACTCAATTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
63012721 TTTGGATGCC
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 53 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:63012718 original size:93 final size:93
Alignment explanation
Indices: 63012559--63012730 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
63012549 GCCCATAAGC
** * * *
63012559 GAACTCGAACTCAACTCAATGAGCTCGGGCATTTGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63012624 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* *
63012652 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
63012717 CGAGTTTGGATGCC
66 CGAGTTCGGATGCC
63012731 CAAATATCTG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:63020907 original size:30 final size:30
Alignment explanation
Indices: 63020852--63020982 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
63020842 ATAGTGAATC
*
63020852 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
63020881 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
63020911 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
63020939 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
63020969 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63020983 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:63020962 original size:58 final size:58
Alignment explanation
Indices: 63020851--63020982 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
63020841 TATAGTGAAT
* * * * *
63020851 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
63020910 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
63020968 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63020983 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:63025001 original size:47 final size:48
Alignment explanation
Indices: 63024649--63025011 Score: 213
Period size: 47 Copynumber: 7.7 Consensus size: 48
63024639 TCACTTGTGC
* * * *
63024649 GCTAATGTAAGA-CATGTCTGGGACAT-GTATCG-GTTAGATTATGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GATGA-GATGA
* * *
63024695 GCCATTGTAAGACCATGTCTGGGACATGGCATCGAGATTGA-GACGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATGA-GATGA
* * * * *
63024743 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCATGACATAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAGATGA
* * * * *
63024789 GCTAGTGTAAGA-CATGTCTCGGACAT-ACAT-TAGC-T-ACGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATGAGATGA
* * * * *
63024833 G-TCAGTGTAAGAGCATGTCTGGGATATGGCATCGAATGGATATGTGA-GA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTG--ATGAGATGA
* * * * * **
63024882 GCTAGTGTAAGACCATGTTTGGAACATTGCATCGGCCTCGATTTCGAT-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGAGATGA
* *
63024931 GTTAGTGTAAGACCAT-ACATGGGACATGGCATCGACTTGATG-GATGA
1 GCTAGTGTAAGACCATGTC-TGGGACATGGCATCGACTTGATGAGATGA
*
63024978 GCTAGTATAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
63025012 GCATTACACC
Statistics
Matches: 243, Mismatches: 52, Indels: 43
0.72 0.15 0.13
Matches are distributed among these distances:
43 1 0.00
44 15 0.06
45 16 0.07
46 54 0.22
47 60 0.25
48 27 0.11
49 60 0.25
50 10 0.04
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAGATGA
Found at i:63026948 original size:33 final size:34
Alignment explanation
Indices: 63026861--63026958 Score: 110
Period size: 34 Copynumber: 2.9 Consensus size: 34
63026851 GTTTCAGTTA
* *
63026861 GGGCCTTAGCCCATTTCAGTAACAGTAGCAGTCT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTCG
* * * *
63026895 GGGCTTGAGCCCATTTCAGTAATAGTATCAGT-G
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTCG
* *
63026928 GGGCCTAAGCCCATTACAGTACCAGTA-CAGT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAGT
63026959 AAGCAATCAA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
32 4 0.07
33 22 0.41
34 28 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTCG
Found at i:63037139 original size:25 final size:25
Alignment explanation
Indices: 63037086--63037139 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
63037076 GTATTTAATT
* *
63037086 TGTCTTAGTTGCTGCATATTTAAGT
1 TGTCTTAGTTGCTGCATATTAAAGA
63037111 TGTCTTAGTTCAGCTG-A-ATTAAAGA
1 TGTCTTAGTT--GCTGCATATTAAAGA
63037136 TGTC
1 TGTC
63037140 CCAAACTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 20 0.80
26 1 0.04
27 4 0.16
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (25 bp):
TGTCTTAGTTGCTGCATATTAAAGA
Found at i:63039695 original size:13 final size:13
Alignment explanation
Indices: 63039677--63039709 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
63039667 ATAAAAATGA
63039677 AACATTCCATAAT
1 AACATTCCATAAT
63039690 AACATTCCATAAT
1 AACATTCCATAAT
63039703 AACATTC
1 AACATTC
63039710 GTTTGCCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (13 bp):
AACATTCCATAAT
Found at i:63046695 original size:41 final size:41
Alignment explanation
Indices: 63046650--63046767 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63046640 TGAAAGATAA
63046650 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63046691 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63046721 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63046762 ATGTAG
1 ATGTAG
63046768 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63046706 original size:71 final size:71
Alignment explanation
Indices: 63046618--63046781 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63046608 GAGATGTATC
63046618 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63046683 AGGACA
66 AGGACA
63046689 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63046754 AGGACA
66 AGGACA
63046760 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63046782 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63054270 original size:41 final size:41
Alignment explanation
Indices: 63054225--63054342 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63054215 TGAAAGATAA
63054225 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63054266 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63054296 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63054337 ATGTAG
1 ATGTAG
63054343 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63054281 original size:71 final size:71
Alignment explanation
Indices: 63054193--63054356 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63054183 GAGATGTATC
63054193 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63054258 AGGACA
66 AGGACA
63054264 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63054329 AGGACA
66 AGGACA
63054335 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63054357 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63059502 original size:2 final size:2
Alignment explanation
Indices: 63059495--63059529 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
63059485 TTGTGCAAAT
63059495 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
63059530 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:63062038 original size:47 final size:47
Alignment explanation
Indices: 63061987--63062181 Score: 198
Period size: 47 Copynumber: 4.1 Consensus size: 47
63061977 TCCGTAAAAT
* * *
63061987 ACCATAGT-TGGGCTATGGCATCGGTGTGATATGAGCTTCTGTATAAG
1 ACCATA-TCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTGTAAG
* *
63062034 ACCATATCTGGGATATGGCATCGGTATGATATGTGCTTCTATGTAAG
1 ACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTGTAAG
** * *
63062081 ACCATATCTGGGATATGGCATCACTGTGATATGTG-ATCCGTGTAAG
1 ACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTGTAAG
** * * * *
63062127 ACCATGGCTGGGCTATGGCTTCGATGTGTGATATGTGAC-TATGTGCAAG
1 ACCATATCTGGGATATGGCATCG--GTGTGATATGTG-CTTCTGTGTAAG
63062176 ACCATA
1 ACCATA
63062182 GTTTTACTAT
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
46 27 0.22
47 72 0.59
48 11 0.09
49 12 0.10
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (47 bp):
ACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTGTAAG
Found at i:63067037 original size:47 final size:47
Alignment explanation
Indices: 63066960--63067169 Score: 190
Period size: 47 Copynumber: 4.4 Consensus size: 47
63066950 TGGTCTTACC
* * * * * *
63066960 ATGGCAACA-TGTAATATGTGATTTCTGTATAAGACCATAGCTAGGCT
1 ATGGCATCAGTGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGAT
* * *
63067007 ATGGCATCGGTGTGATATGAGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
* ** * *
63067054 ATGGCATCAGTATGATATGTGCTTCTATGTAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
* * * * *
63067101 ATGGCATCAATGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGTT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
* *
63067147 ATGGCTTCGGTGTTTGATATGTG
1 ATGGCATCAGTG--TGATATGTG
63067170 ACTATGTGCA
Statistics
Matches: 134, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
46 28 0.21
47 88 0.66
48 18 0.13
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
Found at i:63067175 original size:93 final size:93
Alignment explanation
Indices: 63066989--63067188 Score: 206
Period size: 93 Copynumber: 2.1 Consensus size: 93
63066979 GATTTCTGTA
* ** * *
63066989 TAAGACCATAGCTAGGCTATGGCATCGGTGTGATATGAGCTTCCGTATAAGACCATATCTGGGAT
1 TAAGACCATAGCTAGGATATGGCATCAATGTGATATGAGCATCCGTATAAGACCATAGCTGGGAT
*
63067054 ATGGCATCAGTATGATATGTGCTTCTATG
66 ATGGCATCAGTATGATATGTGC-ACTATG
* * * * * *
63067083 TAAGACCATATCTGGGATATGGCATCAATGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGTT
1 TAAGACCATAGCTAGGATATGGCATCAATGTGATATGAGCATCCGTATAAGACCATAGCTGGGAT
* * *
63067147 ATGGCTTCGGTGTTTGATATGTG-ACTATG
66 ATGGCATC--AGTATGATATGTGCACTATG
63067176 TGCAAGACCATAG
1 T--AAGACCATAG
63067189 TTTTACTATG
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
93 33 0.38
94 33 0.38
95 20 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (93 bp):
TAAGACCATAGCTAGGATATGGCATCAATGTGATATGAGCATCCGTATAAGACCATAGCTGGGAT
ATGGCATCAGTATGATATGTGCACTATG
Found at i:63070025 original size:46 final size:46
Alignment explanation
Indices: 63069892--63070025 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 46
63069882 ATATGCACAT
* * * * * *
63069892 CTCATACATATCTCACATTAGCCATTTGGCTTTACCACACATCCAT
1 CTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATCCAA
* * * *
63069938 CTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATCTAA
1 CTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATCCAA
* *
63069984 CTCATACACATTTCGCATTAGCCATTCGACCTTACCACATAT
1 CTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
63070026 GTACATGTTC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATCCAA
Found at i:63070057 original size:47 final size:47
Alignment explanation
Indices: 63069999--63070495 Score: 809
Period size: 47 Copynumber: 10.6 Consensus size: 47
63069989 ACACATTTCG
* * *
63069999 CATTAGCCATTCGACCTTA-C-CACATATGTACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACG--CATGTTCACATTCATCA
* * *
63070046 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
63070093 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
63070140 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
63070187 CATTGGCCATTCGGCCTTATCCCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
63070234 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* **
63070281 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCATGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
63070328 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
63070375 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
63070422 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
63070469 CATTGGTCATTCGGCCTTATCACACAT
1 CATTGGCCATTCGGCCTTATCACACAT
63070496 GTATCATTTT
Statistics
Matches: 434, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 426 0.98
48 1 0.00
49 7 0.02
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:63070189 original size:23 final size:23
Alignment explanation
Indices: 63070162--63070236 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
63070152 GGCCTTATCG
63070162 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
63070185 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
63070207 CCCACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
63070232 CACAT
1 CACAT
63070237 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:63076206 original size:43 final size:42
Alignment explanation
Indices: 63076128--63076241 Score: 99
Period size: 43 Copynumber: 2.7 Consensus size: 42
63076118 AACATATACA
***
63076128 ATGCCAAC-GTCCCAGAC-GTGGTTTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACAG-GGTTTTACACAAAATCAAACA-CG
* *
63076171 ATGCCACTGTCCCAGACAGGGTTTTACACAAAATCAGATACG
1 ATGCCACTGTCCCAGACAGGGTTTTACACAAAATCAAACACG
* * *
63076213 ATGTCGA-TGTCCCAGACATGGTCTTACAC
1 ATG-CCACTGTCCCAGACAGGGTTTTACAC
63076242 GTAAAACAGA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.45
43 32 0.53
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAGGGTTTTACACAAAATCAAACACG
Found at i:63077979 original size:53 final size:53
Alignment explanation
Indices: 63077897--63078105 Score: 208
Period size: 53 Copynumber: 3.9 Consensus size: 53
63077887 TTTTCTTTTT
* * ** * *
63077897 TGAACTTACCATTGCCATGTATTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* *
63077950 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATTG-GA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACA-TGATATCC-TTGCCTTA
* *
63078003 TAGTAACTCATCAATGCCATGTCC-TGACATGGTCTTACATGATTTCCTTGCCTTA
1 T-G-AACTCACCAATGCCATG-CCTTGACATGGTCTTACATGATATCCTTGCCTTA
* * * * *
63078058 CAGAACTTATCAATGCCATGCCTTGGCATGGTCCTACATGATATCCTT
1 -TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
63078106 ATCTTAACAA
Statistics
Matches: 131, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 43 0.33
54 43 0.33
55 39 0.30
56 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:63078034 original size:55 final size:54
Alignment explanation
Indices: 63077909--63078096 Score: 199
Period size: 55 Copynumber: 3.5 Consensus size: 54
63077899 AACTTACCAT
** * *
63077909 TGCCATGTATTGACATGGTCTTAC-GTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATTGG-ATCCTTGCCTTATAGAACTCATCAA
*
63077962 TGCCATGCCTTGGCATGGTCTTACATTGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATTGGATCC-TTGCCTTATAG-AACTCATCAA
* *
63078017 TGCCATGTCC-TGACATGGTCTTACA-T-GATTTCCTTGCCTTACAGAACTTATCAA
1 TGCCATG-CCTTGACATGGTCTTACATTGGA--TCCTTGCCTTATAGAACTCATCAA
* *
63078071 TGCCATGCCTTGGCATGGTCCTACAT
1 TGCCATGCCTTGACATGGTCTTACAT
63078097 GATATCCTTA
Statistics
Matches: 115, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 34 0.30
55 40 0.35
56 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATTGGATCCTTGCCTTATAGAACTCATCAA
Found at i:63078143 original size:47 final size:47
Alignment explanation
Indices: 63078084--63078205 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
63078074 CATGCCTTGG
* * * **
63078084 CATGGTCCTACATGATATCCTTATCTTAACAAATGCCATGTTTTAAA
1 CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATGTTCCAAA
*
63078131 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATGTTCCAAA
63078178 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
63078206 GTTCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATGTTCCAAA
Found at i:63086924 original size:15 final size:16
Alignment explanation
Indices: 63086892--63086940 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 16
63086882 TGGAGAGATC
63086892 AAAAGAAAATGAGAAAAAG
1 AAAA-AAAATG-G-AAAAG
*
63086911 AAAAAGAAT-GAAAAG
1 AAAAAAAATGGAAAAG
63086926 AAAAAAAATGGAAAA
1 AAAAAAAATGGAAAA
63086941 AGTAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 13 0.48
16 6 0.22
18 4 0.15
19 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (16 bp):
AAAAAAAATGGAAAAG
Found at i:63099057 original size:37 final size:37
Alignment explanation
Indices: 63098999--63099078 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
63098989 ACCCTCTTTG
*
63098999 AAAG-TAAGCCACCACTGGTAAGCCTCGTCTCTCAGC
1 AAAGATAAGCCACCACTAGTAAGCCTCGTCTCTCAGC
*
63099035 AAAGATAAGCCACCATTAGTAAGCCTCGTCTCTCAGC
1 AAAGATAAGCCACCACTAGTAAGCCTCGTCTCTCAGC
63099072 AAAGATA
1 AAAGATA
63099079 CTGCACCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 4 0.10
37 37 0.90
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (37 bp):
AAAGATAAGCCACCACTAGTAAGCCTCGTCTCTCAGC
Found at i:63108476 original size:29 final size:29
Alignment explanation
Indices: 63108444--63108577 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
63108434 ATACCCTCCG
** * *
63108444 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
63108473 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63108502 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
63108531 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63108560 AGCACGCACA-TTAGTGCC
1 AGCTCGCACACTTAGTGCC
63108578 GATCTCGTCA
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
28 8 0.09
29 83 0.90
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:63116455 original size:29 final size:29
Alignment explanation
Indices: 63116423--63116557 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
63116413 ATACCCTCCG
** * *
63116423 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
63116452 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63116481 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
63116510 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63116539 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
63116558 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:63116490 original size:58 final size:58
Alignment explanation
Indices: 63116369--63116558 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
63116359 TACTCGATTT
* * * *** *
63116369 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
63116427 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
63116485 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
63116543 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
63116559 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:63119804 original size:40 final size:40
Alignment explanation
Indices: 63119745--63119949 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
63119735 AATGTGAATG
* * * *
63119745 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
63119785 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGA--
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63119822 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63119862 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63119902 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63119942 ATATCCGG
1 ATATCCGG
63119950 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
37 23 0.16
38 8 0.06
39 10 0.07
40 99 0.71
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63119880 original size:77 final size:80
Alignment explanation
Indices: 63119746--63119949 Score: 252
Period size: 77 Copynumber: 2.6 Consensus size: 80
63119736 ATGTGAATGA
* * ** * * *
63119746 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA-
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
*
63119810 TTGTGCTAGT-GAAC
66 TTGTGCAAGTCGAAC
* * *
63119824 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
**
63119888 TTGTGCAAGTCGTTC
66 TTGTGCAAGTCGAAC
* *
63119903 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63119950 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 53 0.50
78 9 0.08
79 2 0.02
80 43 0.40
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGAAC
Found at i:63127817 original size:40 final size:40
Alignment explanation
Indices: 63127758--63128004 Score: 266
Period size: 40 Copynumber: 6.2 Consensus size: 40
63127748 CAATTGAATG
* * * **
63127758 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTT
* * *
63127798 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TT
* *
63127838 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTT
* * * *
63127877 AAATCCGGGCTAAGACCTGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTT
* * * *
63127917 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTT
* * *
63127957 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTTGTT
63127997 ATATCCGG
1 ATATCCGG
63128005 TTGTATTCCG
Statistics
Matches: 177, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 34 0.19
40 143 0.81
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTT
Found at i:63127988 original size:80 final size:79
Alignment explanation
Indices: 63127760--63127988 Score: 266
Period size: 79 Copynumber: 2.9 Consensus size: 79
63127750 ATTGAATGAT
* * * *
63127760 ATCCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAA-TACCCGAAGGCATTTGTGC-AGTAGTTATATCCGGGCTAAGACCCGAAGGC-A
* *
63127824 TT-GTGCTAGTGACTAC
63 TTCGTGCGAGTGACTAA
* * * * *
63127840 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAAATCCGGGCTAAGACCTGAAGGCATTC
1 ATCCGGGCTAATACCCGAAGGCATTTGTGCAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTC
*
63127905 GTGCGAGTTG-TTAA
66 GTGCGAG-TGACTAA
* *
63127919 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAATACCCGAAGGCATTTGTGC-AGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
63127984 CGTGC
65 CGTGC
63127989 ATGTGGTTAT
Statistics
Matches: 127, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
78 3 0.02
79 62 0.49
80 62 0.49
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAATACCCGAAGGCATTTGTGCAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTC
GTGCGAGTGACTAA
Found at i:63136362 original size:40 final size:39
Alignment explanation
Indices: 63136313--63136518 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
63136303 TCTTCGGAAT
* *
63136313 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
63136352 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
63136391 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
63136431 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
63136471 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
63136510 TTAGCCCGG
1 TTAGCCCGG
63136519 GTATCATTCA
Statistics
Matches: 144, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 47 0.33
40 94 0.65
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:63136518 original size:79 final size:78
Alignment explanation
Indices: 63136313--63136518 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 78
63136303 TCTTCGGAAT
* * * * *** *
63136313 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
63136377 AAATGCCTTCGGTC
65 AAATGCCTTCGGTC
* *
63136391 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
*
63136456 GAATGCCTTCGGGTC
65 AAATGCCTTC-GGTC
* *
63136471 TTAGCCCGGATATAATCACTAGCATAAATGCCTTC-GGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
63136519 GTATCATTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
78 5 0.05
79 69 0.63
80 34 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGTC
Found at i:63138741 original size:45 final size:45
Alignment explanation
Indices: 63138656--63138817 Score: 204
Period size: 45 Copynumber: 3.6 Consensus size: 45
63138646 CTGGCATTTC
* * *
63138656 GCCTGCTAGGATCGAA-GCCCG-ATA-TCATTTCACCGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGTATTATA
* *
63138699 GCGTGCTAGGCTCAAAGGCCCGAATAGTATCTCACTGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGTATTATA
* * * *
63138744 ACCTGTTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGTATTATA
*
63138789 GCCTGCTAGGCTCAAAGGCCCAAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
63138818 CCGTACAATA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 13 0.13
44 5 0.05
45 83 0.81
46 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGTATTATA
Found at i:63142681 original size:27 final size:27
Alignment explanation
Indices: 63142577--63142699 Score: 93
Period size: 27 Copynumber: 4.6 Consensus size: 27
63142567 ATAAATACCT
* *
63142577 CACATAGGGGCAAAACAGTCAATTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** ****
63142604 CATGTAAGGGCGTTTCAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * * *
63142631 CAAATAGGGGGAAAACTGTTATTTTTC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
63142658 CACATAAGGGCAAAACAGTCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
63142685 CTCATAAGGGAAAAA
1 CACATAAGGGCAAAA
63142700 TAGACATTCT
Statistics
Matches: 68, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:63154930 original size:29 final size:27
Alignment explanation
Indices: 63154896--63154998 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
63154886 TACTCGATCA
*
63154896 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
63154925 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
63154954 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
63154983 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
63154999 ATCTTGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:63157043 original size:49 final size:49
Alignment explanation
Indices: 63156941--63157109 Score: 150
Period size: 49 Copynumber: 3.5 Consensus size: 49
63156931 GACGAGTGCT
* * * * *
63156941 AGTGTAAGA-ATGTCTGGGGCAT-GCATC-GACCTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGA-CTCGATAAATGA-AAGCC
* *
63156988 AGTGTAAGACCTGTCTGGGACATGGCATCAATAC-CGATAAATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-AGACTCGATAAATGAAAGCC
* * * * * *
63157037 AGTGTAAGACCTGTTTGGGACATAGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGACTCGATAAATGAAAGCC
*
63157086 AGTGTAAGATCTGTCTGGGACATG
1 AGTGTAAGACCTGTCTGGGACATG
63157110 ACATTGATTC
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
47 9 0.09
48 12 0.12
49 74 0.76
50 2 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGACTCGATAAATGAAAGCC
Found at i:63161077 original size:43 final size:43
Alignment explanation
Indices: 63160935--63161104 Score: 134
Period size: 43 Copynumber: 4.0 Consensus size: 43
63160925 TATCGTACAG
* * * * * *
63160935 TGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATGTCGA
1 TGCCAACATCCCAGACATGGTCTTACACGAAATCACATATCGA
* *
63160978 TGCC-ACTATCCCAGATA-GGATCTTACACG-AATCACAGT-TACGT
1 TGCCAAC-ATCCCAGACATGG-TCTTACACGAAATCACA-TAT-CGA
* *** *
63161021 TGCCGATGCCCCAGACATGGTCTTACTCGAAATCACATATCGA
1 TGCCAACATCCCAGACATGGTCTTACACGAAATCACATATCGA
*
63161064 TGCCAACATCCCAGACCTGGTCTTACACGAGAA-CACATATC
1 TGCCAACATCCCAGACATGGTCTTACACGA-AATCACATATC
63161105 AAAAATCCTA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 12 0.12
43 75 0.75
44 13 0.13
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
TGCCAACATCCCAGACATGGTCTTACACGAAATCACATATCGA
Found at i:63161743 original size:30 final size:30
Alignment explanation
Indices: 63161707--63161766 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
63161697 TGTAAAAACA
63161707 GCAGTTGAATGAAAAGCCGGTTTATCAATC
1 GCAGTTGAATGAAAAGCCGGTTTATCAATC
63161737 GCAGTTGAATGAAAAGCCGGTTTATCAATC
1 GCAGTTGAATGAAAAGCCGGTTTATCAATC
63161767 TTTAGGCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (30 bp):
GCAGTTGAATGAAAAGCCGGTTTATCAATC
Found at i:63165343 original size:39 final size:40
Alignment explanation
Indices: 63165254--63165431 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
63165244 GACTCGCTCA
* ** ** *
63165254 AATGCCTTCGTGACGAAGCCCGG-TTATAGCGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACG
* *
63165294 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * *
63165333 AATGCCTTCGGG-CTTAGCCCGAATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * * *
63165372 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACG
*
63165412 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
63165432 TGGACATCAT
Statistics
Matches: 110, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
38 23 0.21
39 21 0.19
40 57 0.52
41 9 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
Found at i:63165378 original size:78 final size:80
Alignment explanation
Indices: 63165285--63165431 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 80
63165275 GGTTATAGCG
* * * *
63165285 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
63165347 TAGCCCGAATTTATTA
65 TAGCCCGAATTTATTA
** *
63165363 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
63165428 AGCC
66 AGCC
63165432 TGGACATCAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
77 3 0.05
78 34 0.58
79 15 0.25
80 7 0.12
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGAATTTATTA
Found at i:63170237 original size:40 final size:40
Alignment explanation
Indices: 63170193--63170280 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
63170183 GTTCAAAACA
* * ***
63170193 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * *
63170233 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
63170273 CCTTCGGG
1 CCTTCGGG
63170281 CTTAGCCTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
Found at i:63171708 original size:40 final size:40
Alignment explanation
Indices: 63171663--63171789 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 40
63171653 CGGAATATAA
63171663 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63171703 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63171743 CCGGATGTAGCCTCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
63171783 CCGGATA
1 CCGGATA
63171790 AAATTTCCAG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63171813 original size:80 final size:79
Alignment explanation
Indices: 63171679--63171827 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 79
63171669 ATAACCACGT
* * *
63171679 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTCGCACGAACGCCTTCGGG-CTTAGCC
63171744 CGGATGTAGCCTCTA
65 CGGATGTAGCCTCTA
* ** ** *
63171759 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCATTAACGTCTTCGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTC-GCACGAACGCCTTCGGGCTTAGCC
63171823 CGGAT
65 CGGAT
63171828 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 13 0.22
80 46 0.78
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGACTCGCACGAACGCCTTCGGGCTTAGCCC
GGATGTAGCCTCTA
Found at i:63173754 original size:71 final size:71
Alignment explanation
Indices: 63173666--63173828 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
63173656 CGATTTGTCT
*
63173666 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGATACATTTAT
63173731 CTTTCA
66 CTTTCA
63173737 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGATACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGATACATTTAT
63173802 CTTTCA
66 CTTTCA
63173808 -GTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63173829 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 21 0.23
71 70 0.77
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGATACATTTAT
CTTTCA
Found at i:63180733 original size:40 final size:39
Alignment explanation
Indices: 63180689--63180829 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 39
63180679 GTTCAAAACA
* ** * *
63180689 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TATCATAACTCGCACAATTG
* *
63180729 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGG-TATCATAACTCGCACAATTG
*
63180769 CCTTCGGG-CTTAGCCCGGTATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTATCATAACTCGCACAATTG
63180807 CCTTC-GG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGG-TATCA
63180830 CTCGAACATT
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
37 12 0.13
38 28 0.31
39 9 0.10
40 40 0.45
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGTATCATAACTCGCACAATTG
Found at i:63180800 original size:38 final size:39
Alignment explanation
Indices: 63180719--63180830 Score: 165
Period size: 38 Copynumber: 2.9 Consensus size: 39
63180709 TATGGTAACC
* *
63180719 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
63180759 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
63180797 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
63180831 TCGAACATTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 12 0.18
38 28 0.42
39 9 0.14
40 17 0.26
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:63181716 original size:48 final size:48
Alignment explanation
Indices: 63181661--63181837 Score: 327
Period size: 48 Copynumber: 3.7 Consensus size: 48
63181651 GGCTGTCACA
63181661 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
* *
63181709 GTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATGTGTGATAT
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
63181757 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
*
63181805 GTATGTGTGGTAAAGCCGAATGGCTAATGTGAA
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAA
63181838 TGTTGTAACA
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 124 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.32
Consensus pattern (48 bp):
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGT
Found at i:63181931 original size:37 final size:37
Alignment explanation
Indices: 63181877--63181967 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
63181867 AACTTGGAAA
*
63181877 TATGTTCCGGGTGAGACCCGAGGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGAGGACTACGTGTGGAGAT
*
63181915 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGAGGACTACGTGTGGAGAT
63181952 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
63181968 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGAGGACTACGTGTGGAGAT
Found at i:63183917 original size:40 final size:39
Alignment explanation
Indices: 63183871--63184087 Score: 204
Period size: 40 Copynumber: 5.5 Consensus size: 39
63183861 TGAATGATAC
*
63183871 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-ATATAT
* * *
63183911 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATATAT
* * * * *
63183951 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GATATAT
* * * *
63183991 CC-GGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCG-AAGGCATTTGTGCTAGTGATATAT
* * * *
63184030 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGATATAT
*
63184070 CCGGGCTAGGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63184088 AGCAATCATG
Statistics
Matches: 148, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
39 20 0.14
40 125 0.84
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATAT
Found at i:63187736 original size:22 final size:22
Alignment explanation
Indices: 63187708--63187783 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
63187698 GAGATGTATT
63187708 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* * *
63187730 ATGTGATGAATG--TGAAAGTGCATA
1 ATGTGAT-AAGGCCT-AATG-GC-CA
63187754 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
63187777 ATGTGAT
1 ATGTGAT
63187784 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
21 1 0.02
22 17 0.41
23 6 0.15
24 6 0.15
25 10 0.24
26 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:63187761 original size:47 final size:47
Alignment explanation
Indices: 63187702--63187888 Score: 297
Period size: 47 Copynumber: 4.0 Consensus size: 47
63187692 ATGTAGGAGA
63187702 TGTAT-TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
63187748 TGCATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
63187795 AGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
63187842 TGTATATATATGTGATAAGGCCT-ATGGCCGATGTGATGAATGTGAAA
1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
63187889 CATATGTGTG
Statistics
Matches: 131, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 4 0.03
47 85 0.65
48 23 0.18
49 19 0.15
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:63187932 original size:48 final size:48
Alignment explanation
Indices: 63187880--63188128 Score: 444
Period size: 48 Copynumber: 5.2 Consensus size: 48
63187870 CGATGTGATG
* *
63187880 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
63187928 AATGTGAAATATATGTGTGATGTGTATATTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATA-TGTGGTAAAGCCGAATGGCT
*
63187977 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
*
63188025 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
*
63188073 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
63188121 AATGTGAA
1 AATGTGAA
63188129 TGTTGTAACA
Statistics
Matches: 193, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 145 0.75
49 48 0.25
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
Found at i:63187932 original size:96 final size:94
Alignment explanation
Indices: 63187844--63188128 Score: 324
Period size: 96 Copynumber: 3.0 Consensus size: 94
63187834 TGTGAAGGTG
** *
63187844 TATATATATGTGATAAG-GCCTATGGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTAT
1 TATATATATGTGATAAGTG-CTAAAGCCGAATG-GAT-AATGTGAAATATATGTGTGATATGTAT
63187907 ATGTGGTAAAGCCGAATGGCTAATGTGAAATA
63 ATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* * * * * *
63187939 TATGTGTGATGTGTATATTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGTGTAT
1 TATATAT-ATGTG-ATA-AGTGCTAAAGCCGAATGGATAATGTGAAATATATGTGTGATATGTAT
*
63188004 ATGTGGTAAAGCCGAAGGGCTAATGTGAAATA
63 ATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* * * * *
63188036 TATGTGTGATATGT-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATGTGTAT
1 TA--TAT-ATATGTGATAAGTGCTAAAGCCGAATGGATAATGTGAAATATATGTGTGATATGTAT
*
63188100 GTGTGGTAAAGCCGAATGGCTAATGTGAA
63 ATGTGGTAAAGCCGAATGGCTAATGTGAA
63188129 TGTTGTAACA
Statistics
Matches: 169, Mismatches: 13, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
95 5 0.03
96 79 0.47
97 64 0.38
98 9 0.05
99 11 0.07
100 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.33
Consensus pattern (94 bp):
TATATATATGTGATAAGTGCTAAAGCCGAATGGATAATGTGAAATATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAATA
Found at i:63188222 original size:36 final size:37
Alignment explanation
Indices: 63188168--63188257 Score: 155
Period size: 36 Copynumber: 2.4 Consensus size: 37
63188158 AACTTGGAAA
*
63188168 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
63188206 TATGTCCGGG-AAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
63188242 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
63188258 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
36 35 0.70
37 11 0.22
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:63196680 original size:38 final size:40
Alignment explanation
Indices: 63196570--63196750 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
63196560 GACTCGCTCA
** ** *
63196570 AATGCCTTCGGGACGAAGCCCGG-TTATAGCGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACG
*
63196610 AATGCCTTCGGGACTTAACCCGG-TTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* *
63196648 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * * *
63196687 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACG
*
63196727 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63196751 CATCATTCGA
Statistics
Matches: 117, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
37 9 0.08
38 27 0.23
39 19 0.16
40 55 0.47
41 7 0.06
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
Found at i:63196683 original size:77 final size:80
Alignment explanation
Indices: 63196601--63196750 Score: 209
Period size: 77 Copynumber: 1.9 Consensus size: 80
63196591 GGTTATAGCG
* * *
63196601 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGG-TTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
63196662 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
63196678 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
63196743 AGCCCGGA
66 AGCCCGGA
63196751 CATCATTCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
76 3 0.05
77 25 0.40
78 9 0.14
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:63200414 original size:39 final size:40
Alignment explanation
Indices: 63200236--63200418 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
63200226 CCGCACCAAG
* * * * * * * *
63200236 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
63200276 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
63200316 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
63200356 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
63200395 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63200419 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:63207531 original size:40 final size:40
Alignment explanation
Indices: 63207486--63207653 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63207476 CGGAATATAA
63207486 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63207526 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63207566 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
63207606 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63207646 CCGGATAT
1 CCGGATAT
63207654 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63211827 original size:56 final size:56
Alignment explanation
Indices: 63211738--63211871 Score: 232
Period size: 56 Copynumber: 2.4 Consensus size: 56
63211728 GCATCGATTC
*
63211738 ATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATATGACTCCGATAT
1 ATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATATGACTCCGATAT
* *
63211794 ATGTGTGCGAGTAAGACCATGTTTTATATGTTGGCATCGATATGTGACTCCGATAT
1 ATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATATGACTCCGATAT
*
63211850 ATGTGTGCGAGTATGACCATGT
1 ATGTGTGCGAGTAAGACCATGT
63211872 CTGGAAGAAT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (56 bp):
ATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATATGACTCCGATAT
Found at i:63222282 original size:40 final size:40
Alignment explanation
Indices: 63222216--63222382 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63222206 AAATTGAATG
* * *
63222216 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63222255 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63222295 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63222335 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63222375 ATATCCGG
1 ATATCCGG
63222383 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63230302 original size:40 final size:40
Alignment explanation
Indices: 63230236--63230402 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63230226 AAATTGAATG
* * *
63230236 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63230275 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63230315 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63230355 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63230395 ATATCCGG
1 ATATCCGG
63230403 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63237373 original size:46 final size:46
Alignment explanation
Indices: 63237305--63237441 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
63237295 TATATACACA
* * * *
63237305 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
63237351 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
63237397 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCAAATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
63237442 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:63237486 original size:22 final size:22
Alignment explanation
Indices: 63237458--63237533 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
63237448 TTCCAAGTAC
63237458 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
63237480 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
63237504 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
63237527 ATCACAT
1 ATCACAT
63237534 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:63237489 original size:47 final size:47
Alignment explanation
Indices: 63237457--63237793 Score: 530
Period size: 47 Copynumber: 7.2 Consensus size: 47
63237447 CTTCCAAGTA
*
63237457 CATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
63237504 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
* *
63237551 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACCTT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
* *
63237598 CATCACATTGGCCATTCGACCTTATCTCATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
* *
63237645 CATCACATTTGCCATTTGGCCTTATCACATATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
* * *
63237692 CATCACATTGGCCATTCGTCCTTGTCACACATATGCATGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
* * * * **
63237739 CATCACATTGGTCATTCGGTCTTATCCCATATATACACATTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
63237786 CATCACAT
1 CATCACAT
63237794 AAAATCCTAA
Statistics
Matches: 265, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 265 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
Found at i:63241791 original size:40 final size:40
Alignment explanation
Indices: 63241738--63242093 Score: 460
Period size: 40 Copynumber: 8.9 Consensus size: 40
63241728 GAATACACAT
* *
63241738 CACCAACATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
63241778 CACCAGTACGAATGCTCTTTGGGATTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * ** *
63241818 CTCCAGCACGAATGCTCTTCGAGACTTAGATCGGATATAC
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63241858 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
63241898 CACCAGCACGTATACTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * ** *
63241938 CTCCAGCATGAATGCTCTTCAAGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63241978 CACCAGCACGTATGCTCTTCTGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63242018 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
63242058 CACCAGCACGTATGCTCTTTGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
63242094 CATATATAAC
Statistics
Matches: 274, Mismatches: 42, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 274 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:63243589 original size:2 final size:2
Alignment explanation
Indices: 63243582--63243614 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
63243572 TTTGGCCACA
63243582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63243615 CACATCTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63256504 original size:40 final size:40
Alignment explanation
Indices: 63256377--63256506 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63256367 ATGCTGGAAA
* * *
63256377 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63256417 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63256457 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63256497 TTATATCCGG
1 TTATATCCGG
63256507 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63259070 original size:40 final size:40
Alignment explanation
Indices: 63259025--63259191 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63259015 CGGAATATAA
63259025 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63259065 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63259105 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63259145 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63259184 CCGGATAT
1 CCGGATAT
63259192 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63259175 original size:80 final size:79
Alignment explanation
Indices: 63259025--63259191 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
63259015 CGGAATATAA
* *
63259025 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
63259090 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
63259105 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
63259167 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
63259184 CCGGATAT
1 CCGGATAT
63259192 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:63260040 original size:17 final size:19
Alignment explanation
Indices: 63260017--63260062 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63260007 AAGAAGCATG
63260017 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63260035 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63260053 AATCATGCTC
1 AATCATGCTC
63260063 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63266890 original size:41 final size:41
Alignment explanation
Indices: 63266845--63266962 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63266835 TGAAAGATAA
63266845 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63266886 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63266916 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63266957 ATGTAG
1 ATGTAG
63266963 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63266901 original size:71 final size:71
Alignment explanation
Indices: 63266813--63266976 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63266803 GAGATGTATC
63266813 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63266878 AGGACA
66 AGGACA
63266884 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63266949 AGGACA
66 AGGACA
63266955 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63266977 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63273974 original size:41 final size:41
Alignment explanation
Indices: 63273929--63274046 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63273919 TGAAAGATAA
63273929 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63273970 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63274000 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63274041 ATGTAG
1 ATGTAG
63274047 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63273985 original size:71 final size:71
Alignment explanation
Indices: 63273897--63274060 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63273887 GAGATGTATC
63273897 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63273962 AGGACA
66 AGGACA
63273968 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63274033 AGGACA
66 AGGACA
63274039 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63274061 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63277592 original size:40 final size:40
Alignment explanation
Indices: 63277465--63277594 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
63277455 ATGCTGGAAA
* * *
63277465 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63277505 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
63277545 TTCTATCCGGGCTAAGACCCAAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63277585 TTATATCCGG
1 TTATATCCGG
63277595 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63277831 original size:120 final size:120
Alignment explanation
Indices: 63277689--63277919 Score: 444
Period size: 120 Copynumber: 1.9 Consensus size: 120
63277679 AAGGTACGTT
*
63277689 CGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTCGTGGCTACATCCGG
1 CGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGG
63277754 GCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCAGGCTAAGCCCCGAAGA
66 GCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCAGGCTAAGCCCCGAAGA
63277809 CGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGG
1 CGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGG
*
63277874 GCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAG
66 GCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCAGGCTAAG
63277920 ACCCAAAGGC
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (120 bp):
CGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGG
GCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCAGGCTAAGCCCCGAAGA
Found at i:63277951 original size:40 final size:40
Alignment explanation
Indices: 63277703--63277953 Score: 209
Period size: 40 Copynumber: 6.3 Consensus size: 40
63277693 AATGCTGGAA
* * **
63277703 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTCGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
63277743 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
* * * * * ** **
63277783 ATTCTATCCAGGCTAAGCCCCGAAGACGTTAATGCTG-GAA
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTG
* * *
63277823 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
63277863 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
* *
63277903 ATTCTATCCGGGCTAAGACCCAAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
63277943 GTTATATCCGG
1 ATTATATCCGG
63277954 TTATATTCCG
Statistics
Matches: 158, Mismatches: 50, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
39 1 0.01
40 156 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:63287086 original size:20 final size:20
Alignment explanation
Indices: 63287061--63287101 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
63287051 AGAAACAATT
*
63287061 AAAATAG-ATAATTAAGATAA
1 AAAATAGAACAATTAA-ATAA
63287081 AAAATAGAACAATTAAATAA
1 AAAATAGAACAATTAAATAA
63287101 A
1 A
63287102 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAATAGAACAATTAAATAA
Found at i:63291250 original size:24 final size:24
Alignment explanation
Indices: 63291218--63291304 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
63291208 AATCTCAAAT
63291218 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
63291242 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
*
63291266 GCACTATGTGTGCTATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
63291290 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
63291305 ACATAATAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:63291270 original size:48 final size:48
Alignment explanation
Indices: 63291218--63291326 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
63291208 AATCTCAAAT
** *
63291218 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
*
63291266 GCACTATGTGTGCTATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
63291314 GCACTATGTGTGC
1 GCACTATGTGTGC
63291327 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:63294786 original size:40 final size:39
Alignment explanation
Indices: 63294723--63294808 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
63294713 TAACGACTTA
**
63294723 TCGGCTAAAATGACACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
* * * *
63294762 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCT
63294802 TCGGCTA
1 TCGGCTA
63294809 TATTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
Found at i:63300502 original size:16 final size:16
Alignment explanation
Indices: 63300481--63300514 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
63300471 TTGGATTGAG
63300481 AAAATTAATTAATTAA
1 AAAATTAATTAATTAA
63300497 AAAATTAATTAATTAA
1 AAAATTAATTAATTAA
63300513 AA
1 AA
63300515 TTAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTAATTAATTAA
Found at i:63300527 original size:14 final size:13
Alignment explanation
Indices: 63300487--63300527 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
63300477 TGAGAAAATT
63300487 AATTAATTAA-AA
1 AATTAATTAATAA
63300499 AATTAATTAATTAA
1 AATTAATTAA-TAA
63300513 AATTAATTTAATAA
1 AATTAA-TTAATAA
63300527 A
1 A
63300528 TAATGTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 10 0.38
14 12 0.46
15 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATTAATTAATAA
Found at i:63303641 original size:8 final size:8
Alignment explanation
Indices: 63303620--63303648 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
63303610 GGGCCGAAAG
63303620 CGGGCCAA
1 CGGGCCAA
63303628 -GGGCCAA
1 CGGGCCAA
63303635 CGGGCCAA
1 CGGGCCAA
63303643 CGGGCC
1 CGGGCC
63303649 CACTTTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.21, C:0.38, G:0.41, T:0.00
Consensus pattern (8 bp):
CGGGCCAA
Found at i:63303926 original size:2 final size:2
Alignment explanation
Indices: 63303919--63303954 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
63303909 GCCTCGCCAC
63303919 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63303955 GTTCTGGTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63309126 original size:40 final size:40
Alignment explanation
Indices: 63309071--63309298 Score: 331
Period size: 40 Copynumber: 5.8 Consensus size: 40
63309061 CGGATGATAA
* *
63309071 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
63309111 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
*
63309151 CGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
63309191 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
* * **
63309231 C--ACTAAGTCTCGAAGGCATTTGTGCGAACTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
63309269 CGGGCTAAGTCCCGAA-GCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63309299 AGCTATATCC
Statistics
Matches: 172, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 34 0.20
39 13 0.08
40 125 0.73
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:63309207 original size:80 final size:79
Alignment explanation
Indices: 63309074--63309324 Score: 350
Period size: 80 Copynumber: 3.2 Consensus size: 79
63309064 ATGATAACGG
* *
63309074 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
63309139 AGTTACTA-ATTCCGA
66 AGTTACTATA-TCC-A
63309154 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
63309219 AGTTACTATATCCA
66 AGTTACTATATCCA
* ** *
63309233 -CTAAGTCTCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAA-GCATTTGAGC
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
63309295 GAG-TAGCTATATCCG
65 GAGTTA-CTATATCCA
* *
63309310 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
63309325 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
76 2 0.01
77 22 0.14
78 57 0.36
79 1 0.01
80 74 0.47
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGTTACTATATCCA
Found at i:63311562 original size:40 final size:40
Alignment explanation
Indices: 63311517--63311683 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
63311507 CGGAATATAA
63311517 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63311557 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63311597 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
63311637 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
63311676 CCGGATAT
1 CCGGATAT
63311684 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63319428 original size:40 final size:40
Alignment explanation
Indices: 63319383--63319512 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63319373 CGGAATATAA
63319383 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63319423 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63319463 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
63319503 CCGGATATAA
1 CCGGATATAA
63319513 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63319533 original size:80 final size:80
Alignment explanation
Indices: 63319399--63319548 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
63319389 ATAACCACGT
* * *
63319399 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
63319464 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
63319479 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
63319543 CCGGAT
65 CCGGAT
63319549 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:63322369 original size:40 final size:40
Alignment explanation
Indices: 63322284--63322434 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63322274 AATTGAATGA
* * *
63322284 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63322324 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63322365 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63322404 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63322435 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63322448 original size:40 final size:40
Alignment explanation
Indices: 63322321--63322450 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63322311 ATGCTGGAAA
* * * *
63322321 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
63322361 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
63322401 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
63322441 TTATATCCGG
1 TTATATCCGG
63322451 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:63325448 original size:15 final size:15
Alignment explanation
Indices: 63325428--63325496 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
63325418 GTATCTTGGG
63325428 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
63325443 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
63325458 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
63325473 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
63325488 TTTCTTTAT
1 TTTCTTTAT
63325497 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:63325497 original size:30 final size:30
Alignment explanation
Indices: 63325419--63325498 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
63325409 CATAGTATCG
* * *
63325419 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
63325449 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
63325479 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
63325499 AGTTTTCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:63327941 original size:46 final size:46
Alignment explanation
Indices: 63327891--63328066 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
63327881 TGTTTGGGCA
*
63327891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
63327937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
63327984 TCCGAGA-TCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
63328030 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63328067 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 25, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
46 67 0.67
47 32 0.32
48 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63328046 original size:93 final size:93
Alignment explanation
Indices: 63327887--63328058 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
63327877 AGGATGTTTG
* * *
63327887 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
63327952 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
63327980 GGCATCCGAGA-TCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGA-ACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGA
*
63328044 GTTGAGTTCGAGTTC
65 GTTGAGTCCGAGTTC
63328059 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63331935 original size:46 final size:46
Alignment explanation
Indices: 63331774--63332041 Score: 242
Period size: 46 Copynumber: 5.7 Consensus size: 46
63331764 AGGGTATAAT
* * * * *
63331774 GCCGATGCCATGTCCCAGACATGGTATTACATTGGCTCTCACATATCCG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCT-CGAG
* * *
63331824 GCCGTTGCATGTCCCAGACATGTCTTACACTAG--CACATGTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCG-AG
*
63331868 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * * * *
63331914 GCCGACGGATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * *
63331960 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
63332008 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
63332042 ACACACACAT
Statistics
Matches: 181, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
43 2 0.01
44 35 0.19
45 1 0.01
46 63 0.35
47 26 0.14
48 33 0.18
49 15 0.08
50 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:63332021 original size:94 final size:95
Alignment explanation
Indices: 63331770--63332044 Score: 345
Period size: 94 Copynumber: 2.9 Consensus size: 95
63331760 ACATAGGGTA
* * * *
63331770 TAATGCCGATGCCATGTCCCAGACATGGTATTACATTGGCTCTCACATATCCGT-GCCGTTGCAT
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-CGTGGCCGATGCAT
63331834 GTCCCAGACATGTCTTACACTAGCACATGTCG
64 GTCCCAGACATGTCTTACACTAGCACATGTCG
* * * *
63331866 T-A-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGACGGATG
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATCGTGGCCGATGCATG
*
63331925 TCCCAGACATGTCTTACACTAGCTC-TCGTC-
65 TCCCAGACATGTCTTACACTAGCACAT-GTCG
*
63331955 TCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATG
1 T-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATG
63332019 TCCCAGACATGTCTTACACTAGCACA
65 TCCCAGACATGTCTTACACTAGCACA
63332045 CACACATCGC
Statistics
Matches: 153, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
89 4 0.03
90 36 0.24
91 2 0.01
92 21 0.14
93 27 0.18
94 59 0.39
95 3 0.02
96 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (95 bp):
TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATGT
CCCAGACATGTCTTACACTAGCACATGTCG
Found at i:63346703 original size:70 final size:70
Alignment explanation
Indices: 63346590--63346747 Score: 208
Period size: 70 Copynumber: 2.3 Consensus size: 70
63346580 GTCGAATACC
* * * * * **
63346590 CGATGTTTTGCGCACTAAGTGCCATCGTATAGCCGAAGCTATTATAATTCCGCACACTAAGTGTG
1 CGATGTTTCGCACACTAAATGCCATCGCATAGCCGAAGCTATTATAATTCCACACACTAAGTGCC
63346655 TTACT
66 TTACT
* *
63346660 CGATGTTTCGCACACTAAATGCCATCGCATAGCCGAAGTTATTATAATTCTACACACTAAGTGCC
1 CGATGTTTCGCACACTAAATGCCATCGCATAGCCGAAGCTATTATAATTCCACACACTAAGTGCC
63346725 TTACT
66 TTACT
** *
63346730 TAATGTTTCCCACACTAA
1 CGATGTTTCGCACACTAA
63346748 GTGTTATATA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (70 bp):
CGATGTTTCGCACACTAAATGCCATCGCATAGCCGAAGCTATTATAATTCCACACACTAAGTGCC
TTACT
Found at i:63350472 original size:40 final size:40
Alignment explanation
Indices: 63350300--63350465 Score: 289
Period size: 40 Copynumber: 4.2 Consensus size: 40
63350290 AACCCAAGTA
* *
63350300 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63350339 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63350379 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63350419 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63350459 CCTTCGG
1 CCTTCGG
63350466 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 13 0.11
40 109 0.89
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63361223 original size:156 final size:156
Alignment explanation
Indices: 63360928--63361213 Score: 396
Period size: 156 Copynumber: 1.8 Consensus size: 156
63360918 AGGCGGGATT
*
63360928 ATTTCTGTGACAGCCCTAATGTGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGTCA
1 ATTTCTGTGACAGCCCTAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCA
** * *
63360993 TAAAAATAATTAACTGTCATATTTGATGCTTATTATATGTATATATGCATGTGTGAAAATTTCAT
66 TAAAAATAATTAAAAGTCATATTTGATGCTTATGATATGTATAAATGCATGTGTGAAAATTTCAT
63361058 ATTTGAATTTTGTTAATTGTAGGTGA
131 ATTTGAATTTTGTTAATTGTAGGTGA
* * * * *
63361084 ATTTTTGTGACATCCCTAATTTGACCCTAGTCGGAAAGTGGTTTCGGGACCACTAAACCGAGTCT
1 ATTTCTGTGACAGCCCTAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCA
* * * * * *
63361149 TATAAGTAATTAAAAGTTATATTCT-ATGTTTATGATGT-TAGTAAATGCATGTGTGAAAGTTTC
66 TAAAAATAATTAAAAGTCATATT-TGATGCTTATGATATGTA-TAAATGCATGTGTGAAAATTTC
63361212 AT
129 AT
63361214 GCATTAATTT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
155 2 0.02
156 109 0.97
157 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (156 bp):
ATTTCTGTGACAGCCCTAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCA
TAAAAATAATTAAAAGTCATATTTGATGCTTATGATATGTATAAATGCATGTGTGAAAATTTCAT
ATTTGAATTTTGTTAATTGTAGGTGA
Found at i:63362672 original size:28 final size:28
Alignment explanation
Indices: 63362603--63362703 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63362593 GACAAGATTG
* * * *
63362603 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63362633 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63362661 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63362690 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63362704 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.