Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 226 of 444
Found at i:63595679 original size:93 final size:93
Alignment explanation
Indices: 63595518--63595689 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63595508 GGATGGTTGA
* *
63595518 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63595583 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63595611 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63595676 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63595690 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63598515 original size:13 final size:13
Alignment explanation
Indices: 63598497--63598522 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63598487 TAGCACCTCG
63598497 AACAGGTCAAGGT
1 AACAGGTCAAGGT
63598510 AACAGGTCAAGGT
1 AACAGGTCAAGGT
63598523 TCCCTATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (13 bp):
AACAGGTCAAGGT
Found at i:63599426 original size:49 final size:50
Alignment explanation
Indices: 63599372--63599469 Score: 153
Period size: 51 Copynumber: 2.0 Consensus size: 50
63599362 GTTATTCTAG
* *
63599372 TTTAATTAATTAAGTTG-TTTTAATTGTCTTTAGTTGTTTAAATAATTAT
1 TTTAATTAATTAAGTTGTTTTTAATTGTCTTTAGCTGCTTAAATAATTAT
*
63599421 TTTAATTAATTAAGTTGTTTTTTAATTTTCTTTAGCTGCTTAAATAATT
1 TTTAATTAATTAAGTTG-TTTTTAATTGTCTTTAGCTGCTTAAATAATT
63599470 TCAGCAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 17 0.39
51 27 0.61
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (50 bp):
TTTAATTAATTAAGTTGTTTTTAATTGTCTTTAGCTGCTTAAATAATTAT
Found at i:63599479 original size:51 final size:49
Alignment explanation
Indices: 63599375--63599481 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 49
63599365 ATTCTAGTTT
* * ***
63599375 AATTAATTAAGTTGTTTTAATTGTCTTTAGTTGTTTAAATAATTATTTT
1 AATTAATTAAGTTGTTTTAATTGTCTTTAGCTGCTTAAATAATTATAGC
*
63599424 AATTAATTAAGTTGTTTTTTAATTTTCTTTAGCTGCTTAAATAATT-TCAGC
1 AATTAATTAAGTTG--TTTTAATTGTCTTTAGCTGCTTAAATAATTAT-AGC
63599475 AATTAAT
1 AATTAAT
63599482 ATGTTCCAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 14 0.29
50 1 0.02
51 34 0.69
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (49 bp):
AATTAATTAAGTTGTTTTAATTGTCTTTAGCTGCTTAAATAATTATAGC
Found at i:63606550 original size:40 final size:39
Alignment explanation
Indices: 63606505--63606634 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63606495 CGGAATATAA
63606505 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63606545 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63606585 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63606625 CCGGATATAA
1 CCGGATATAA
63606635 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63606649 original size:40 final size:40
Alignment explanation
Indices: 63606521--63606672 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63606511 ATAACCATGT
* * *
63606521 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63606561 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63606601 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63606641 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63606673 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63606655 original size:80 final size:80
Alignment explanation
Indices: 63606521--63606670 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63606511 ATAACCATGT
*
63606521 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63606585 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63606601 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63606664 CCCGGAT
64 CCCGGAT
63606671 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63608945 original size:40 final size:40
Alignment explanation
Indices: 63608818--63608947 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63608808 ATGCTGGAAA
* * *
63608818 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63608858 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63608898 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63608938 TTATATCCGG
1 TTATATCCGG
63608948 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63616862 original size:40 final size:40
Alignment explanation
Indices: 63616777--63616927 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
63616767 AATTGAATGA
* * * **
63616777 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
63616817 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
63616858 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
63616897 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63616928 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:63616941 original size:40 final size:40
Alignment explanation
Indices: 63616814--63616943 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63616804 ATGCTGGAAA
* * *
63616814 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63616854 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63616894 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63616934 TTATATCCGG
1 TTATATCCGG
63616944 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63622872 original size:46 final size:46
Alignment explanation
Indices: 63622805--63622933 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
63622795 TGTAACCCGC
* * * *
63622805 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63622851 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63622897 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63622934 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63622952 original size:46 final size:45
Alignment explanation
Indices: 63622813--63622952 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
63622803 GCCCATAAGC
* ** * *
63622813 GAACTCGGACTCAACTCAACGAGCTCGGCCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
63622859 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
63622905 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
63622951 GA
1 GA
63622953 CATGTAACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:63627886 original size:40 final size:40
Alignment explanation
Indices: 63627827--63628034 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
63627817 CAATTGAATG
* * * *
63627827 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
63627867 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
63627907 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63627947 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63627987 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63628027 ATATCCGG
1 ATATCCGG
63628035 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63627965 original size:80 final size:80
Alignment explanation
Indices: 63627828--63628034 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
63627818 AATTGAATGA
* * ** * * *
63627828 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CA
*
63627893 -TTGTGCTAGT-G-AC
65 TTTGTGCAAGTCGTAC
* * *
63627906 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
63627971 ATTTGTGCAAGTCGTTC
64 ATTTGTGCAAGTCGTAC
* *
63627988 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63628035 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 103 0.94
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGTAC
Found at i:63635889 original size:40 final size:40
Alignment explanation
Indices: 63635830--63636036 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63635820 CAATTGAATG
* * * *
63635830 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
63635870 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63635909 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63635949 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63635989 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63636029 ATATCCGG
1 ATATCCGG
63636037 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 34 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63636009 original size:80 final size:77
Alignment explanation
Indices: 63635831--63636036 Score: 241
Period size: 79 Copynumber: 2.6 Consensus size: 77
63635821 AATTGAATGA
* * ** * * *
63635831 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
*
63635896 TGTGCTAGTGAC
66 TGTGCAAGTGAC
* * *
63635908 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
63635973 ATTTGTGCAAGTCGTTC
64 A-TTGTGCAAGT-G-AC
* *
63635990 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63636037 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 53 0.49
80 52 0.48
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (77 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TGTGCAAGTGAC
Found at i:63642376 original size:48 final size:48
Alignment explanation
Indices: 63642302--63642678 Score: 632
Period size: 48 Copynumber: 7.9 Consensus size: 48
63642292 TATACATGTG
* * *
63642302 TGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAGATATTTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
63642350 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
63642398 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
63642446 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
63642494 TGTGGTAGAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
63642542 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
63642590 TGTGGTAAAACCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
63642638 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
63642679 GTTTGTATAT
Statistics
Matches: 314, Mismatches: 11, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
48 313 1.00
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:63644219 original size:40 final size:40
Alignment explanation
Indices: 63644174--63644604 Score: 736
Period size: 40 Copynumber: 10.8 Consensus size: 40
63644164 TATATAGCCA
* * *
63644174 GGCTAAGTCCTGAAAAGCATTCGTGCTGGTGTTATGTCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
*
63644214 GGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
63644254 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
*
63644294 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
63644334 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
*
63644374 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCA
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
*
63644414 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* * *
63644454 GGCTAAGTCTCAAAGAGAATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
*
63644494 GGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
63644534 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* * *
63644574 GGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
63644605 ATGTGCATTC
Statistics
Matches: 369, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 369 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
Found at i:63648138 original size:48 final size:48
Alignment explanation
Indices: 63648064--63648440 Score: 623
Period size: 48 Copynumber: 7.9 Consensus size: 48
63648054 TATACATGTG
* * *
63648064 TGTGGTAAATCCGAATGACTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
63648112 TGTGGTAAAGCCGAATGGCTATTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
63648160 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
63648208 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
63648256 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
63648304 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
63648352 TGTGGTAAAACCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
63648400 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
63648441 GTTTGTATAT
Statistics
Matches: 311, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 1 0.00
48 309 0.99
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:63654183 original size:28 final size:28
Alignment explanation
Indices: 63654138--63654199 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
63654128 TCAGTAATAG
* *
63654138 TTCAGTTTCAGTTAGGGCCTAAGCTCAT
1 TTCAGTATCAGTTAGGGCCTAAGCCCAT
* *
63654166 TTCAGTATCAGTGT-GGGCTTTAGCCCAT
1 TTCAGTATCAGT-TAGGGCCTAAGCCCAT
63654194 TTCAGT
1 TTCAGT
63654200 GACAGTAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (28 bp):
TTCAGTATCAGTTAGGGCCTAAGCCCAT
Found at i:63664327 original size:30 final size:30
Alignment explanation
Indices: 63664291--63664350 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
63664281 ATAACTAAAA
63664291 ACTCATAGT-GTCCGTACCTCGTTCTGATTG
1 ACTCATAGTGGT-CGTACCTCGTTCTGATTG
*
63664321 ACTCATAGTGGTCGTACCTCGTTTTGATTG
1 ACTCATAGTGGTCGTACCTCGTTCTGATTG
63664351 TAGTTTTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (30 bp):
ACTCATAGTGGTCGTACCTCGTTCTGATTG
Found at i:63668970 original size:3 final size:3
Alignment explanation
Indices: 63668957--63668988 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
63668947 AATTCGGATG
*
63668957 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63668989 TCGTATGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:63675357 original size:42 final size:42
Alignment explanation
Indices: 63675274--63675417 Score: 139
Period size: 43 Copynumber: 3.4 Consensus size: 42
63675264 GTCCCAAATG
* * * *
63675274 TGGTCTTACATGTAATCAAATATTGATGCC-ACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAGTA-CGATGCCAAC-GTCCCAGACA
63675317 TGGTCTTACACGAAATCAAGTACGATGCCAACGTCCCAGACA
1 TGGTCTTACACGAAATCAAGTACGATGCCAACGTCCCAGACA
* * * * *
63675359 TGGTCTTACTCATAAACCATAAGT-CGATGACAACGTCCCAGACG
1 TGGTCTTACAC-GAAATC--AAGTACGATGCCAACGTCCCAGACA
*
63675403 TGATCTTACACGAAA
1 TGGTCTTACACGAAA
63675418 ACACATATCG
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.31
43 28 0.33
44 27 0.32
45 4 0.05
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAGTACGATGCCAACGTCCCAGACA
Found at i:63677972 original size:39 final size:39
Alignment explanation
Indices: 63677918--63678030 Score: 199
Period size: 39 Copynumber: 2.9 Consensus size: 39
63677908 AATGTTCGAG
63677918 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* **
63677957 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGTGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
63677996 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAA
63678031 ATATATTATG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
Found at i:63686208 original size:40 final size:40
Alignment explanation
Indices: 63686086--63686233 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 40
63686076 TGAATGATAC
* * * *
63686086 CCGGGCTAAGTCTCGAAGGCATTTATGCGAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* * *
63686126 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* ** *
63686166 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* * * *
63686206 CCGAGTTAAGACACGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
63686234 TTGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:63688338 original size:16 final size:15
Alignment explanation
Indices: 63688314--63688343 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63688304 AACTGTTTTA
63688314 TTACAAATTTCACTC
1 TTACAAATTTCACTC
63688329 TTACATAATTTCACT
1 TTACA-AATTTCACT
63688344 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:63691783 original size:15 final size:15
Alignment explanation
Indices: 63691764--63691808 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
63691754 AACTAGGATT
*
63691764 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
* *
63691779 GAGAAATCCAAAATA
1 AAGAAATCCAAGATA
63691794 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
63691809 CAATATCATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.58, C:0.13, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:63691956 original size:2 final size:2
Alignment explanation
Indices: 63691949--63691973 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63691939 TGTACCTTCC
63691949 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
63691974 TAAACAGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63695808 original size:56 final size:56
Alignment explanation
Indices: 63695731--63695857 Score: 227
Period size: 56 Copynumber: 2.3 Consensus size: 56
63695721 ATAGGTCTGA
*
63695731 GAGCTTGTGTAGCCCCATTGAGAGACATGTAATTATGTGGTACACGCTAGGTCCAG
1 GAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGGTACACGCTAGGTCCAG
**
63695787 GAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGGTACACGCTAGGTCTGG
1 GAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGGTACACGCTAGGTCCAG
63695843 GAGCTTATGTAGCCC
1 GAGCTTATGTAGCCC
63695858 TGTTAAGAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (56 bp):
GAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGGTACACGCTAGGTCCAG
Found at i:63695906 original size:56 final size:54
Alignment explanation
Indices: 63695763--63695923 Score: 160
Period size: 56 Copynumber: 2.9 Consensus size: 54
63695753 AGACATGTAA
* * ** * * **
63695763 TTATGTGGTACACGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGACATGTAA
1 TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGC--GTGG
* *
63695819 TTATGTGGTACACGCTAGGTCTGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
1 TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
* * * *
63695873 TTATGTGATACATGCTAGGTCCGGGTGCTCTTATGTAGCCTTGTTGAGAGG
1 TTATGTGATACACGCTAGGTCCGGGAG--CTTATGTAGCCCTGTTAAGAGG
63695924 AGTGCTATGT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 25 0.28
56 64 0.72
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (54 bp):
TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
Found at i:63699317 original size:50 final size:50
Alignment explanation
Indices: 63699195--63699483 Score: 265
Period size: 50 Copynumber: 5.7 Consensus size: 50
63699185 AACTGAAGCT
* * * *
63699195 ATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
63699244 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * ** *
63699294 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACC
* * * * * * * **
63699345 ACCCGGTACGCATAGAAGCTTGCACTTAGTACTATACATGCAACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
** * * * *
63699395 ATCTGGTACATGTAGTATCCTGCATTTTGTACTACACACGTGATCTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
* *** *
63699447 ATTTTAAACACATAGTAGCCTGCACATAGTACTACAC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACAC
63699484 TTGTGTTTTC
Statistics
Matches: 186, Mismatches: 50, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
49 40 0.22
50 79 0.42
51 36 0.19
52 31 0.17
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:63699397 original size:101 final size:100
Alignment explanation
Indices: 63699195--63699483 Score: 294
Period size: 101 Copynumber: 2.9 Consensus size: 100
63699185 AACTGAAGCT
* * * * * * *
63699195 ATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGA-CCAACAATCCGGTACACGTAG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAACAACCCGGTACACATAG
* **
63699259 TAGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AAGCCTGCACTTAGTACTACACACGCAACCTAACC
* * *
63699294 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTACCCGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AAACAACCCGGTACACATA
* * *
63699359 GAAGCTTGCACTTAGTACTATACATGCAACCTAACC
65 GAAGCCTGCACTTAGTACTACACACGCAACCTAACC
* * * * * ***
63699395 ATCTGGTACATGTAGTATCCTGCATTTTGTACTACACACGTGATCTAA-AACCATTTTAAACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAACAACC-CGGT--ACACA
* *
63699459 TAGTAGCCTGCACATAGTACTACAC
63 TAGAAGCCTGCACTTAGTACTACAC
63699484 TTGTGTTTTC
Statistics
Matches: 154, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
99 41 0.27
100 4 0.03
101 84 0.55
102 25 0.16
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (100 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAACAACCCGGTACACATAG
AAGCCTGCACTTAGTACTACACACGCAACCTAACC
Found at i:63700266 original size:33 final size:33
Alignment explanation
Indices: 63700219--63700311 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 33
63700209 CATGGCTAGC
* * *
63700219 CTATGGCATTCTGATGAGAAGATCATAGTTGGG
1 CTATGGCATCCTGATGAGAAGACCATAGCTGGG
* * *
63700252 CTATGGTATCCTGATTATAAGACCATAGCTGGG
1 CTATGGCATCCTGATGAGAAGACCATAGCTGGG
* * * *
63700285 GTATGGCATTCTGCTGATAAGACCATA
1 CTATGGCATCCTGATGAGAAGACCATA
63700312 ACCCGGTTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (33 bp):
CTATGGCATCCTGATGAGAAGACCATAGCTGGG
Found at i:63704543 original size:39 final size:39
Alignment explanation
Indices: 63704496--63704577 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
63704486 GTTTTCACAT
* *
63704496 TTAAAGAGCTTGAATACAAGCATTTTTGTTATGTTTTAG
1 TTAAAGAGCTTGAATACAAGCATTTATGTTATGGTTTAG
63704535 TTAAAGAGCTTGAATACAAGCATTTATGTTATGGTTTAG
1 TTAAAGAGCTTGAATACAAGCATTTATGTTATGGTTTAG
63704574 TTAA
1 TTAA
63704578 GTTTTCACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.41
Consensus pattern (39 bp):
TTAAAGAGCTTGAATACAAGCATTTATGTTATGGTTTAG
Found at i:63706119 original size:26 final size:24
Alignment explanation
Indices: 63706081--63706165 Score: 73
Period size: 26 Copynumber: 3.4 Consensus size: 24
63706071 TGGCTATCCA
*
63706081 GAGC-TCCTGATTAAAGGCTCTTCGT
1 GAGCTTCCTAATTAAA-GCTCTT-GT
*
63706106 GAGCTTCCTAATTAAAAGTTCTTTGT
1 GAGCTTCCTAATT-AAAGCTC-TTGT
* * * *
63706132 GAACTTTCTAATTATAGCTCTTAT
1 GAGCTTCCTAATTAAAGCTCTTGT
63706156 GAGCTTCCTA
1 GAGCTTCCTA
63706166 TTATATACCC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
24 11 0.23
25 9 0.19
26 23 0.48
27 5 0.10
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (24 bp):
GAGCTTCCTAATTAAAGCTCTTGT
Found at i:63708245 original size:40 final size:40
Alignment explanation
Indices: 63708183--63708398 Score: 287
Period size: 40 Copynumber: 5.4 Consensus size: 40
63708173 AAACCAAGTA
* * *
63708183 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
63708222 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63708262 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63708302 CCTTCGGGACTTAGCCCAGA-ATTAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
63708342 CCTTCGGGACTTAGCTCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63708382 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
63708399 CGTTATCATC
Statistics
Matches: 160, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.09
40 146 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63714010 original size:39 final size:39
Alignment explanation
Indices: 63713966--63714276 Score: 491
Period size: 39 Copynumber: 8.0 Consensus size: 39
63713956 ATTATATTAT
* *
63713966 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
63714005 CAGCACGAAGCCTGCGGGACTTTGGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
63714044 CAGCACGAAGCC-GCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
63714082 CAGCACGAAGCCTGCGAGACTTTAGTCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
63714121 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
63714160 CAGCACGAAGCCTGCGGGACTTTAGCCCGAATATATTT-
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
63714198 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
63714237 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACAGTTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA-TTTC
63714277 AGTGTCTTGC
Statistics
Matches: 251, Mismatches: 18, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
38 73 0.29
39 174 0.69
40 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:63714094 original size:77 final size:78
Alignment explanation
Indices: 63713966--63714276 Score: 491
Period size: 77 Copynumber: 4.0 Consensus size: 78
63713956 ATTATATTAT
* * *
63713966 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
63714031 CTGGATACATTTC
66 CCGGATACATTTC
* * *
63714044 CAGCACGAAGCC-GCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGAGACTTTAGT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
63714108 CTGGATACATTTC
66 CCGGATACATTTC
* *
63714121 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
* *
63714186 CCGAATATATTT-
66 CCGGATACATTTC
63714198 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
63714263 CCGGATACAGTTTC
66 CCGGATACA-TTTC
63714277 AGTGTCTTGC
Statistics
Matches: 214, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
77 142 0.66
78 72 0.34
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (78 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CCGGATACATTTC
Found at i:63714129 original size:116 final size:116
Alignment explanation
Indices: 63713965--63714276 Score: 500
Period size: 116 Copynumber: 2.7 Consensus size: 116
63713955 AATTATATTA
* *
63713965 TCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGG
1 TCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGG
* * *
63714030 CCTGGATACATTTCCAGCACGAAGCC-GCGGGACTTTGGCCCGGATACATT
66 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATT
* * *
63714080 TCCAGCACGAAGCCTGCGAGACTTTAGTCTGGATACATTTCCAGCACGAAGCCTGCGGGACTTTG
1 T-CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTG
* *
63714145 GCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATATATT
65 GCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATT
*
63714197 TCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG
1 TCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGG
63714262 CCCGGATACAGTTTC
66 CCCGGATACA-TTTC
63714277 AGTGTCTTGC
Statistics
Matches: 179, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
115 1 0.01
116 152 0.85
117 26 0.15
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (116 bp):
TCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGG
CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATT
Found at i:63717350 original size:47 final size:47
Alignment explanation
Indices: 63717284--63717730 Score: 745
Period size: 47 Copynumber: 9.4 Consensus size: 47
63717274 TATCACAGTT
* * * *
63717284 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
* *
63717331 ATATACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
63717378 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
63717425 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
63717472 ATACACTTTCACATTCATCACATT-GCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
63717520 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
63717567 ATACACTTTCACATTCATCACATTGGCCCTTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
63717614 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
63717663 ATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
63717712 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
63717731 GTAACAAAAT
Statistics
Matches: 383, Mismatches: 11, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 18 0.05
47 246 0.64
48 30 0.08
49 89 0.23
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:63717586 original size:25 final size:25
Alignment explanation
Indices: 63717558--63717636 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
63717548 ATTCGGCCTT
63717558 ATCACATACATACACTTTCACATTC
1 ATCACATACATACACTTTCACATTC
* * * *
63717583 ATCACAT---TGGC-CCTTCGGCCTT-
1 ATCACATACAT-ACACTTTC-ACATTC
63717605 ATCACATACATACACTTTCACATTC
1 ATCACATACATACACTTTCACATTC
63717630 ATCACAT
1 ATCACAT
63717637 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 12 0.31
23 4 0.10
24 4 0.10
25 19 0.49
ACGTcount: A:0.30, C:0.33, G:0.05, T:0.32
Consensus pattern (25 bp):
ATCACATACATACACTTTCACATTC
Found at i:63717591 original size:189 final size:190
Alignment explanation
Indices: 63717284--63717730 Score: 776
Period size: 189 Copynumber: 2.4 Consensus size: 190
63717274 TATCACAGTT
* * *
63717284 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTG-CCATTCGGCCTTATCACATATACATACACTTTCACATT
63717346 CATCACATTGGCCATTCAGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
64 CATCACATTGGCCATTCAGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
63717411 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATAC
129 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATAC
63717472 ATACACTTTCACATTCATCACATTGCCATTCGGCCTTATCACATATACATACACTTTCACATTCA
1 ATACACTTTCACATTCATCACATTGCCATTCGGCCTTATCACATATACATACACTTTCACATTCA
* *
63717537 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCCTTCGGC
66 TCACATTGGCCATTCAGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
63717602 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
131 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATAC
*
63717663 ATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATT-GCCATTCGGCCTTATCACATATACATACACTTTCACATTC
63717728 ATC
65 ATC
63717731 GTAACAAAAT
Statistics
Matches: 247, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
187 14 0.06
188 21 0.09
189 142 0.57
191 28 0.11
192 42 0.17
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.33
Consensus pattern (190 bp):
ATACACTTTCACATTCATCACATTGCCATTCGGCCTTATCACATATACATACACTTTCACATTCA
TCACATTGGCCATTCAGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATAC
Found at i:63724432 original size:39 final size:39
Alignment explanation
Indices: 63724388--63724620 Score: 376
Period size: 39 Copynumber: 6.0 Consensus size: 39
63724378 ATTATATTAT
* *
63724388 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
63724427 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* **
63724466 CAGCACGAAGCTTGCGGGACTTTAGTACGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
63724505 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
63724544 CAGCACGAAGCCTGTGGGACTTTAGCTCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
63724583 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63724621 TCAGTGTCTT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 176 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:63727715 original size:51 final size:52
Alignment explanation
Indices: 63727640--63727741 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 52
63727630 GGGAAAACTC
63727640 ATGATTTCGACAATTGAGAGCATTTTTGGTAAAACCAATCATAAAACTTTTT
1 ATGATTTCGACAATTGAGAGCATTTTTGGTAAAACCAATCATAAAACTTTTT
* * * *
63727692 ATGATTTTGGCAA-TGATAGCATTTTTGGTAAAACCAGTCATAAAACTTTT
1 ATGATTTCGACAATTGAGAGCATTTTTGGTAAAACCAATCATAAAACTTTT
63727742 CCCTTCTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 35 0.76
52 11 0.24
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (52 bp):
ATGATTTCGACAATTGAGAGCATTTTTGGTAAAACCAATCATAAAACTTTTT
Found at i:63732781 original size:40 final size:40
Alignment explanation
Indices: 63732728--63732936 Score: 237
Period size: 40 Copynumber: 5.2 Consensus size: 40
63732718 CCTTCGGAGT
* * ** *
63732728 TTAA-CCGGATATAGTTACTCGTTCAAATGCCTTCAGGAC
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
* **
63732767 ATGGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAC
63732807 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
63732847 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATC
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-C
** * * *
63732887 TTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGAC
1 TTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAC
*
63732927 TTAGCCCGGA
1 TTAACCCGGA
63732937 CATCATTCGA
Statistics
Matches: 147, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 129 0.88
41 13 0.09
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:63735441 original size:27 final size:26
Alignment explanation
Indices: 63735411--63735472 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 26
63735401 TTTAAAACCC
63735411 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTC-T
*
63735438 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGGTAATTTTGCTCT
63735465 TAGGGGTA
1 TAGGGGTA
63735473 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.45
28 17 0.52
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTTGCTCT
Found at i:63735475 original size:27 final size:28
Alignment explanation
Indices: 63735411--63735478 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
63735401 TTTAAAACCC
*
63735411 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63735438 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63735465 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
63735479 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:63736142 original size:27 final size:27
Alignment explanation
Indices: 63736111--63736271 Score: 214
Period size: 27 Copynumber: 6.0 Consensus size: 27
63736101 TTCTACCCTA
*
63736111 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63736138 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
63736165 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
63736192 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63736219 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
63736246 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
63736272 TTGAAGGTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:63736181 original size:54 final size:54
Alignment explanation
Indices: 63736114--63736264 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
63736104 TACCCTACAA
* *
63736114 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
63736168 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
63736222 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
63736265 CTATAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:63736288 original size:27 final size:27
Alignment explanation
Indices: 63736257--63736507 Score: 312
Period size: 27 Copynumber: 9.3 Consensus size: 27
63736247 AAGGGTATTT
* * *
63736257 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAACTGAGGGTAAAA
*
63736284 CGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAACTGAGGGTAAAA
* *
63736311 CGGTAATTCTATAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACT-GAGGGTAAAA
*
63736338 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAACTGAGGGTAAAA
*
63736365 TGGTAATTCTGTAAA-TCGAGGATAAAA
1 TGGTAATTCTGTAAACT-GAGGGTAAAA
*
63736392 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAACTGAGGGTAAAA
**
63736419 CAGTAATTCTGTAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACT-GAGGGTAAAA
**
63736446 CAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAACTGAGGGTAAAA
*
63736473 TGGTAATTCTGTAAA-TCAAGGGTAAAA
1 TGGTAATTCTGTAAACT-GAGGGTAAAA
63736500 TGGTAATT
1 TGGTAATT
63736508 TTACAAGTCA
Statistics
Matches: 201, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
26 4 0.02
27 194 0.97
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TGGTAATTCTGTAAACTGAGGGTAAAA
Found at i:63736290 original size:81 final size:81
Alignment explanation
Indices: 63736122--63736291 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
63736112 AAGGGTATTT
* * * *
63736122 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
***
63736187 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
63736203 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTA
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
**
63736268 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
63736284 CGGTAATT
1 CGGTAATT
63736292 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
TAAACCAAGGGTAAAA
Found at i:63736299 original size:54 final size:54
Alignment explanation
Indices: 63736257--63736507 Score: 362
Period size: 54 Copynumber: 4.6 Consensus size: 54
63736247 AAGGGTATTT
* * **
63736257 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* * *
63736311 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
63736365 TGGTAATTCTGTAAATCG-AGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAAGG-TAAAATAGTAATTCTGTAAACTGAGGGTAAAA
** * *
63736419 CAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
63736473 TGGTAATTCTGTAAATC-AAGGGTAAAATGGTAATT
1 TGGTAATTCTGTAAATCGAA-GGTAAAATAGTAATT
63736508 TTACAAGTCA
Statistics
Matches: 177, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.02
54 172 0.97
55 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:63739582 original size:27 final size:26
Alignment explanation
Indices: 63739552--63739613 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 26
63739542 TTTAAAACCC
*
63739552 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCAGTAATTTTGCTC-T
*
63739579 TAGGGGTAATTTCAGTAATTTTGCTCT
1 TAGGGGT-ATATCAGTAATTTTGCTCT
63739606 TAGGGGTA
1 TAGGGGTA
63739614 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.47
28 16 0.50
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCAGTAATTTTGCTCT
Found at i:63739616 original size:27 final size:28
Alignment explanation
Indices: 63739552--63739618 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
63739542 TTTAAAACCC
* *
63739552 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
63739579 TAGGGGTAATTTCAGTAATTTTGCTC-T
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
63739606 TAGGGGTAATTTC
1 TAGGGGTAATTTC
63739619 GTGATCTACG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.21, C:0.10, G:0.25, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCAGTAATTTTGCTCTT
Found at i:63740285 original size:27 final size:27
Alignment explanation
Indices: 63740254--63740414 Score: 205
Period size: 27 Copynumber: 6.0 Consensus size: 27
63740244 TTCTACCCTA
*
63740254 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63740281 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
63740308 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63740335 CAACGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63740362 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
63740389 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
63740415 TTGAAGGTAA
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:63740324 original size:54 final size:54
Alignment explanation
Indices: 63740257--63740407 Score: 239
Period size: 54 Copynumber: 2.8 Consensus size: 54
63740247 TACCCTACAA
* *
63740257 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
63740311 GGGTATTTTGGTAATTTTGTAAACCAACGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
63740365 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
63740408 CTATAAATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:63740431 original size:27 final size:27
Alignment explanation
Indices: 63740400--63740648 Score: 309
Period size: 27 Copynumber: 9.2 Consensus size: 27
63740390 AAGGGTATTT
* *
63740400 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
63740427 CGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* * *
63740454 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
63740481 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
63740508 TGGTAATTCTGTAAATCGAGGATAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
63740535 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
** *
63740562 CAGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
** *
63740589 CAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
63740616 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
63740643 TGGTAA
1 TGGTAA
63740649 GTTTACAAGT
Statistics
Matches: 192, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 192 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TGGTAATTCTGTAAATTGAGGGTAAAA
Found at i:63740433 original size:81 final size:81
Alignment explanation
Indices: 63740265--63740434 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
63740255 AAGGGTATTT
* * * *
63740265 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
***
63740330 TAAACCAACGGTATTT
66 TAAACCAACGGTAAAA
** * * * * *
63740346 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTA
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
**
63740411 TAAATTGAA-GGTAAAA
66 TAAA-CCAACGGTAAAA
63740427 CGGTAATT
1 CGGTAATT
63740435 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
TAAACCAACGGTAAAA
Found at i:63740664 original size:54 final size:54
Alignment explanation
Indices: 63740400--63740648 Score: 390
Period size: 54 Copynumber: 4.6 Consensus size: 54
63740390 AAGGGTATTT
* * **
63740400 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
63740454 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
63740508 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
** * *
63740562 CAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
63740616 TGGTAATTCTATAAATCGAGGGTAAAATGGTAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAA
63740649 GTTTACAAGT
Statistics
Matches: 178, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 178 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:63740664 original size:81 final size:81
Alignment explanation
Indices: 63740402--63740648 Score: 347
Period size: 81 Copynumber: 3.0 Consensus size: 81
63740392 GGGTATTTTG
* * * *
63740402 GTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATA
63740467 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATA
* * * *
63740483 GTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTCTG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTCTA
*
63740546 TAAA-CTGAGGGTAAAACA
64 TAAATC-GAGGGTAAAATA
*
63740564 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATA
*
63740629 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATA
63740645 GTAA
1 GTAA
63740649 GTTTACAAGT
Statistics
Matches: 144, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
80 2 0.01
81 139 0.97
82 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATA
AATCGAGGGTAAAATA
Found at i:63747765 original size:40 final size:40
Alignment explanation
Indices: 63747682--63747834 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
63747672 TCGAATGATG
* *
63747682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
63747722 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
63747762 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
63747803 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63747835 CGTTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:63750726 original size:31 final size:30
Alignment explanation
Indices: 63750685--63750747 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
63750675 CCTTTTCATA
*
63750685 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCA-AACACTGGGCCGAAGCCT
**
63750716 TTTCAAATTTCAATTACTGGGCCGAAGCCT
1 TTTCAAATTTCAAACACTGGGCCGAAGCCT
63750746 TT
1 TT
63750748 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (30 bp):
TTTCAAATTTCAAACACTGGGCCGAAGCCT
Found at i:63751017 original size:23 final size:23
Alignment explanation
Indices: 63750937--63751055 Score: 159
Period size: 23 Copynumber: 5.0 Consensus size: 23
63750927 TGCTTTATCA
*
63750937 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
63750961 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
63750985 CAATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
63751009 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
63751032 TATAATTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
63751055 T
1 T
63751056 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 45 0.52
24 29 0.34
25 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:63751130 original size:20 final size:20
Alignment explanation
Indices: 63751105--63751165 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
63751095 TTATGATTAC
63751105 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63751125 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
63751145 GTCATGTGTATCTCATACAT
1 ATCATGTGCATATCATACAT
63751165 A
1 A
63751166 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63751240 original size:25 final size:25
Alignment explanation
Indices: 63751208--63751255 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63751198 ATACATAAAC
* * *
63751208 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63751233 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63751256 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63752521 original size:27 final size:27
Alignment explanation
Indices: 63752491--63752686 Score: 216
Period size: 27 Copynumber: 7.3 Consensus size: 27
63752481 AGGGTATTTT
* *
63752491 AGTAATTTTGTAAATCGAGGATAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
63752518 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
63752545 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
63752572 AGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
63752599 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
63752626 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
63752653 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
*
63752680 GGTAATT
1 AGTAATT
63752687 TTACAAATTG
Statistics
Matches: 147, Mismatches: 19, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 145 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:63752665 original size:81 final size:81
Alignment explanation
Indices: 63752490--63752686 Score: 247
Period size: 81 Copynumber: 2.4 Consensus size: 81
63752480 AAGGGTATTT
* * * * *
63752490 TAGTAATTTTGTAAATCGAGGATAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAGAGTAATTATA
63752555 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* *
63752571 TAG-AAATACTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTA
1 TAGTAATTA-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA-GAGTAATTA
* *
63752634 TGTAAATCGGGGGTAAAA
64 TATAAATCGAGGGTAAAA
* *
63752652 TGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATT
1 TAGTAATTATGTAAATCGA-GGGTAAAACGGTAATT
63752687 TTACAAATTG
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
80 4 0.04
81 91 0.91
82 5 0.05
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.28
Consensus pattern (81 bp):
TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAGAGTAATTATA
TAAATCGAGGGTAAAA
Found at i:63754678 original size:40 final size:40
Alignment explanation
Indices: 63754595--63754747 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
63754585 TCGAATGATG
* *
63754595 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
63754635 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
63754675 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
63754716 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63754748 CGTTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:63757551 original size:27 final size:26
Alignment explanation
Indices: 63757507--63757557 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63757497 CTTGCTGCAA
*
63757507 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
63757534 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
63757558 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:63771708 original size:25 final size:25
Alignment explanation
Indices: 63771680--63771760 Score: 69
Period size: 25 Copynumber: 3.4 Consensus size: 25
63771670 CTAATGGCCG
63771680 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
63771705 ATGTGATG-AGGCCTAAG-G-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
63771727 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
63771752 ATGTGATGA
1 ATGTGATGA
63771761 GGCCTAAGGG
Statistics
Matches: 37, Mismatches: 16, Indels: 6
0.63 0.27 0.10
Matches are distributed among these distances:
22 8 0.22
23 6 0.16
24 6 0.16
25 17 0.46
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:63771737 original size:47 final size:47
Alignment explanation
Indices: 63771608--63771837 Score: 374
Period size: 47 Copynumber: 4.9 Consensus size: 47
63771598 ATGAGATTTA
* *
63771608 TATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
63771655 TATGTATAT-ATG-TGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63771700 TATATATGTGATGAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63771747 TATATATGTGATGAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63771794 TATAAATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA
63771838 TATATGTGTG
Statistics
Matches: 170, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 38 0.22
46 5 0.03
47 127 0.75
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:63771910 original size:48 final size:48
Alignment explanation
Indices: 63771848--63771980 Score: 185
Period size: 48 Copynumber: 2.7 Consensus size: 48
63771838 TATATGTGTG
*
63771848 ATGTGTATAGGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGAT
1 ATGTGTAT--GTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGAT
* * ** *
63771898 ATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGGT
1 ATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGAT
*
63771946 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAA
63771981 TGTTGTAACA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
48 68 0.89
50 8 0.11
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGAT
Found at i:63772075 original size:37 final size:36
Alignment explanation
Indices: 63772020--63772106 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
63772010 AACTTGGAAA
63772020 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
63772058 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
63772095 TATGTCCGGGTA
1 TATGTCCGGGTA
63772107 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:63774585 original size:48 final size:47
Alignment explanation
Indices: 63774514--63774781 Score: 227
Period size: 48 Copynumber: 5.6 Consensus size: 47
63774504 ATTGAAATAC
* * * *
63774514 GTGTAAGAACATGTTTGGGACATGGCATCAGCGTTGATATCTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATATCTGAGCTA
* * *
63774562 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGATATCTGAGCTA
* * *** * *
63774610 GGGTAAGACCATGTCTGGGACATGGCATTGGCCACAT-TACGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATAT-C-TGAGCTA
* * * * *
63774658 CTGTAAGACCATGCCTGGGACATGGCATCGGCAATGAGA-CAAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATATC-TGAGCTA
* * * *
63774706 GTGTAAGACCATGTTTGGGACATGGCATCGAC-TGCAACATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCTTG--ATATCTGAGCTA
*
63774754 GTGTAAGACCATGTTTGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
63774782 TGACATTTTA
Statistics
Matches: 180, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
46 3 0.02
47 2 0.01
48 174 0.97
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATCTGAGCTA
Found at i:63774759 original size:96 final size:96
Alignment explanation
Indices: 63774514--63774781 Score: 263
Period size: 96 Copynumber: 2.8 Consensus size: 96
63774504 ATTGAAATAC
* * *
63774514 GTGTAAGAACATGTTTGGGACATGGCATC-AGCGTTG--ATATCTGTGCTAGTGTAAGACCATGT
1 GTGTAAGACCATGTTTGGGACATGGCATCGA-C--TGCAATATGTGAGCTAGTGTAAGACCATGT
*** * *** *
63774576 CTGGGACATGGCATCGGTGTTGATATGTGTGCTA
63 CTGGGACATGGCATCGGCAATGAGACAAGAGCTA
* * * * ** * * * * * *
63774610 GGGTAAGACCATGTCTGGGACATGGCATTGGCCACATTACGAGAGCCACTGTAAGACCATGCCTG
1 GTGTAAGACCATGTTTGGGACATGGCATCGACTGCAATATGTGAGCTAGTGTAAGACCATGTCTG
63774675 GGACATGGCATCGGCAATGAGACAAGAGCTA
66 GGACATGGCATCGGCAATGAGACAAGAGCTA
* *
63774706 GTGTAAGACCATGTTTGGGACATGGCATCGACTGCAACATGTGAGCTAGTGTAAGACCATGTTTG
1 GTGTAAGACCATGTTTGGGACATGGCATCGACTGCAATATGTGAGCTAGTGTAAGACCATGTCTG
63774771 GGACATGGCAT
66 GGACATGGCAT
63774782 TGACATTTTA
Statistics
Matches: 132, Mismatches: 37, Indels: 6
0.75 0.21 0.03
Matches are distributed among these distances:
96 132 1.00
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (96 bp):
GTGTAAGACCATGTTTGGGACATGGCATCGACTGCAATATGTGAGCTAGTGTAAGACCATGTCTG
GGACATGGCATCGGCAATGAGACAAGAGCTA
Found at i:63775573 original size:15 final size:15
Alignment explanation
Indices: 63775553--63775582 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63775543 GTATAGTACC
*
63775553 GTATTTTGGATATTT
1 GTATTTCGGATATTT
63775568 GTATTTCGGATATTT
1 GTATTTCGGATATTT
63775583 CCTATCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (15 bp):
GTATTTCGGATATTT
Found at i:63781359 original size:40 final size:40
Alignment explanation
Indices: 63781315--63781411 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
63781305 CAGCTAAATG
* * *
63781315 TGGCATTTAGTATGCGGTTCGAGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATGTA
* *
63781355 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATGTA
*
63781395 CGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
63781412 GATATTGAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATGTA
Found at i:63781446 original size:28 final size:29
Alignment explanation
Indices: 63781396--63781508 Score: 128
Period size: 28 Copynumber: 4.0 Consensus size: 29
63781386 GGCTATGTAC
* *
63781396 GGCACTTAGTGTGC-GAGATATTGAGTAT
1 GGCACTTAGTGTACGGAGACATTGAGTAT
*
63781424 GGCACTTAGTGTACGGA-ACATTGAGAAT
1 GGCACTTAGTGTACGGAGACATTGAGTAT
**
63781452 GGCACTTAGTGT--GTGAGATGTTGAGTAT
1 GGCACTTAGTGTACG-GAGACATTGAGTAT
*
63781480 GGCACTTAGTGTACGG-GACATTGAATAT
1 GGCACTTAGTGTACGGAGACATTGAGTAT
63781508 G
1 G
63781509 CAGCAGTATT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
26 1 0.01
27 2 0.03
28 64 0.90
29 3 0.04
30 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.32, T:0.30
Consensus pattern (29 bp):
GGCACTTAGTGTACGGAGACATTGAGTAT
Found at i:63781482 original size:56 final size:56
Alignment explanation
Indices: 63781396--63781503 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 56
63781386 GGCTATGTAC
63781396 GGCACTTAGTGTGCGAGATATTGAGTATGGCACTTAGTGTACGGAACATTGAGAAT
1 GGCACTTAGTGTGCGAGATATTGAGTATGGCACTTAGTGTACGGAACATTGAGAAT
* * *
63781452 GGCACTTAGTGTGTGAGATGTTGAGTATGGCACTTAGTGTACGGGACATTGA
1 GGCACTTAGTGTGCGAGATATTGAGTATGGCACTTAGTGTACGGAACATTGA
63781504 ATATGCAGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (56 bp):
GGCACTTAGTGTGCGAGATATTGAGTATGGCACTTAGTGTACGGAACATTGAGAAT
Found at i:63795494 original size:40 final size:40
Alignment explanation
Indices: 63795477--63795642 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
63795467 CACAATTGCT
*
63795477 TTCGGGTCTTAACCCGGATATAACAACTCGCACGAATGCC
1 TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
63795517 TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
1 TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
63795557 TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
1 TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
* **
63795597 TTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCC
1 TTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGCC
63795637 TTCGGG
1 TTCGGG
63795643 ACTGTGACAG
Statistics
Matches: 121, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 120 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCC
Found at i:63795573 original size:80 final size:80
Alignment explanation
Indices: 63795446--63795642 Score: 290
Period size: 80 Copynumber: 2.5 Consensus size: 80
63795436 TCTTCGGAAT
* * * * *
63795446 TTAG-CCGGATATAACCGCAAGCACAATTGCTTTCGGGTCTTAACCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCAC
63795510 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
63795525 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCA
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCA
63795589 CGAATGCCTTCGGGTC
65 CGAATGCCTTCGGGTC
*
63795605 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGG
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGG
63795643 ACTGTGACAG
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 5 0.05
80 99 0.94
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:63797305 original size:40 final size:40
Alignment explanation
Indices: 63797246--63797493 Score: 257
Period size: 40 Copynumber: 6.2 Consensus size: 40
63797236 CAATTGAATG
* * * * **
63797246 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * *
63797286 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
* *
63797326 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * *
63797366 AAATCTGGGCTAAGACCTGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * *
63797406 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * *
63797446 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTTGTT
63797486 ATATCCGG
1 ATATCCGG
63797494 TCGTATTCCG
Statistics
Matches: 176, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 173 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:63807777 original size:70 final size:71
Alignment explanation
Indices: 63807694--63807856 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
63807684 CGATTTGTCT
63807694 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63807758 CTTTCA
66 CTTTCA
*
63807764 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63807829 CTTTCA
66 CTTTCA
63807835 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63807857 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63807894 original size:71 final size:70
Alignment explanation
Indices: 63807694--63807890 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
63807684 CGATTTGTCT
* * * *
63807694 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
63807758 CTTTCA
65 CTTTCA
* * * *
63807764 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
63807829 CTTTCA
65 CTTTCA
* *
63807835 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
63807891 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63816601 original size:40 final size:39
Alignment explanation
Indices: 63816490--63816603 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
63816480 TTAATCACGT
* * *
63816490 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
63816530 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
63816570 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
63816604 TTTCCAGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:63820719 original size:30 final size:30
Alignment explanation
Indices: 63820674--63820731 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
63820664 CACGGCCATG
*
63820674 ACACATGGGCATGTGG-TCTACCCGTGTGTC
1 ACACACGGGCATGTGGATC-ACCCGTGTGTC
*
63820704 ACACACGGGCGTGTGGATCACCCGTGTG
1 ACACACGGGCATGTGGATCACCCGTGTG
63820732 GAAGTGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (30 bp):
ACACACGGGCATGTGGATCACCCGTGTGTC
Found at i:63822754 original size:11 final size:11
Alignment explanation
Indices: 63822740--63822765 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63822730 TGCCAAAATA
63822740 AAAATAAAAAG
1 AAAATAAAAAG
63822751 AAAATAAAAAG
1 AAAATAAAAAG
63822762 AAAA
1 AAAA
63822766 GCAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAATAAAAAG
Found at i:63824575 original size:23 final size:26
Alignment explanation
Indices: 63824549--63824604 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 26
63824539 TGGAGGGAAG
*
63824549 AGAAAAGGAAGAGAGGAGAAAAAAG-AA
1 AGAAAAGG-AGAGA-GAAAAAAAAGAAA
63824576 AGAAAAGGAGAGAGAAAAAAAAGAAA
1 AGAAAAGGAGAGAGAAAAAAAAGAAA
63824602 AGA
1 AGA
63824605 GAAAAAAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.33
26 10 0.37
27 8 0.30
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (26 bp):
AGAAAAGGAGAGAGAAAAAAAAGAAA
Found at i:63824597 original size:16 final size:16
Alignment explanation
Indices: 63824572--63824617 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
63824562 AGGAGAAAAA
*
63824572 AGAAAGAAAAGGAGAG
1 AGAAAAAAAAGGAGAG
* *
63824588 AGAAAAAAAAGAAAAG
1 AGAAAAAAAAGGAGAG
63824604 AG-AAAAAAAGGAGA
1 AGAAAAAAAAGGAGA
63824618 AAGGAGAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 10 0.40
16 15 0.60
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AGAAAAAAAAGGAGAG
Found at i:63824604 original size:26 final size:27
Alignment explanation
Indices: 63824549--63824601 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 27
63824539 TGGAGGGAAG
*
63824549 AGAAAAGGAAGAGAGGAGAAAAAAGAA
1 AGAAAAGGAAGAGAGGAAAAAAAAGAA
63824576 AGAAAAGG-AGAGA-GAAAAAAAAGAA
1 AGAAAAGGAAGAGAGGAAAAAAAAGAA
63824601 A
1 A
63824602 AGAGAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 12 0.48
26 5 0.20
27 8 0.32
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (27 bp):
AGAAAAGGAAGAGAGGAAAAAAAAGAA
Found at i:63824612 original size:18 final size:18
Alignment explanation
Indices: 63824564--63824626 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
63824554 AGGAAGAGAG
*
63824564 GAGAAAAAAGAAAGAAAA
1 GAGAAAAAAAAAAGAAAA
63824582 GGAGAGAGAAAAAAAAGAAAA
1 -GAGA-A-AAAAAAAAGAAAA
** *
63824603 GAGAAAAAAAGGAGAAAG
1 GAGAAAAAAAAAAGAAAA
63824621 GAGAAA
1 GAGAAA
63824627 GGGGAAAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
18 16 0.42
19 5 0.13
20 5 0.13
21 12 0.32
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
GAGAAAAAAAAAAGAAAA
Found at i:63825602 original size:42 final size:42
Alignment explanation
Indices: 63825556--63825644 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
63825546 CGGTTCCAAG
* *
63825556 CATGCCCCTGTCTCCA-TCTCGTGGGTGTTACACGACCTAGGA
1 CATGCCCCTGTCTCCATTCT-GTAGGTGTCACACGACCTAGGA
* * *
63825598 CATGCCCGTGTCTCCATTCTGTAGGTGTCACAGGGCCTAGGA
1 CATGCCCCTGTCTCCATTCTGTAGGTGTCACACGACCTAGGA
63825640 CATGC
1 CATGC
63825645 TCGTGGGTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.17, C:0.31, G:0.26, T:0.26
Consensus pattern (42 bp):
CATGCCCCTGTCTCCATTCTGTAGGTGTCACACGACCTAGGA
Found at i:63828441 original size:22 final size:22
Alignment explanation
Indices: 63828415--63828458 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63828405 TAGCATCTAG
*
63828415 GAGTTTAATTACCTCAGCTTTA
1 GAGTTTAATTACCTCAACTTTA
63828437 GAGTTTAATTACCTCAACTTTA
1 GAGTTTAATTACCTCAACTTTA
63828459 ACAACTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (22 bp):
GAGTTTAATTACCTCAACTTTA
Found at i:63830511 original size:13 final size:13
Alignment explanation
Indices: 63830493--63830521 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63830483 GAACCTGTAG
63830493 CCAAAGTGGTAAC
1 CCAAAGTGGTAAC
63830506 CCAAAGTGGTAAC
1 CCAAAGTGGTAAC
63830519 CCA
1 CCA
63830522 TGGTGAGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (13 bp):
CCAAAGTGGTAAC
Found at i:63833492 original size:26 final size:26
Alignment explanation
Indices: 63833456--63833507 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63833446 TATGTATATT
63833456 AGATTTGTAAAAATGATTGAGTTAAG
1 AGATTTGTAAAAATGATTGAGTTAAG
63833482 AGATTTGTAAAAATGATTGAGTTAAG
1 AGATTTGTAAAAATGATTGAGTTAAG
63833508 TTGAAAGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (26 bp):
AGATTTGTAAAAATGATTGAGTTAAG
Found at i:63838065 original size:14 final size:13
Alignment explanation
Indices: 63838046--63838097 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
63838036 TGACATGTTC
63838046 TTCTTTCCTTTTCT
1 TTCTTT-CTTTTCT
* *
63838060 TTCTTTTTATTTTT
1 TTCTTTCT-TTTCT
63838074 TTCTTTTCTTTTCT
1 TTC-TTTCTTTTCT
63838088 TTC-TTCTTTT
1 TTCTTTCTTTT
63838098 TACTCCTTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 7 0.22
13 1 0.03
14 20 0.62
15 4 0.12
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTTCT
Found at i:63851823 original size:28 final size:28
Alignment explanation
Indices: 63851783--63851865 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
63851773 GAAGTAGTTG
*
63851783 GGCTTGATGGGCCATATGAATGTGATTA
1 GGCTTGATGGGCCATGTGAATGTGATTA
63851811 GGCTTGATGGGCCATGTGAATGTGATTA
1 GGCTTGATGGGCCATGTGAATGTGATTA
*
63851839 GGCTTGATGGGCCATGTGAATGAGATT
1 GGCTTGATGGGCCATGTGAATGTGATT
63851866 GGGCCTAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.23, C:0.11, G:0.35, T:0.31
Consensus pattern (28 bp):
GGCTTGATGGGCCATGTGAATGTGATTA
Found at i:63852218 original size:27 final size:27
Alignment explanation
Indices: 63852198--63852421 Score: 251
Period size: 27 Copynumber: 8.3 Consensus size: 27
63852188 AAATTACTAG
63852198 AATACCCTCGATTTGTAAAATTATCGA
1 AATACCCTCGATTTGTAAAATTATCGA
63852225 AATA-CCTGCGATTTGTAAAATTATCGA
1 AATACCCT-CGATTTGTAAAATTATCGA
* *
63852252 AACACCCTCGATTTGTAAAATTATAGA
1 AATACCCTCGATTTGTAAAATTATCGA
* * *
63852279 AATACCCTTGATTTGAAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTATCGA
*
63852306 AATACACTCGATTTGTAAAATTA-CTGA
1 AATACCCTCGATTTGTAAAATTATC-GA
* *
63852333 AATACCTTTGATTTGTAAAATTATCGA
1 AATACCCTCGATTTGTAAAATTATCGA
* * *
63852360 AAAACCC-CTATTTTGTAAAATTATCAA
1 AATACCCTCGA-TTTGTAAAATTATCGA
* *
63852387 AATACCCTTG-TAGTGTAAAATTA-CTGA
1 AATACCCTCGAT-TTGTAAAATTATC-GA
63852414 AATACCCT
1 AATACCCT
63852422 TGTAGTGTAA
Statistics
Matches: 166, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.04
27 155 0.93
28 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
AATACCCTCGATTTGTAAAATTATCGA
Found at i:63852422 original size:27 final size:27
Alignment explanation
Indices: 63852188--63852461 Score: 142
Period size: 27 Copynumber: 10.1 Consensus size: 27
63852178 TAATAAAGAG
*
63852188 AAATTACT-AGAATACCCTCG-ATTTGTA
1 AAATTACTGA-AATACCCTTGTA-TTGTA
*
63852215 AAATTA-TCGAAATA-CC-TGCGATTTGTA
1 AAATTACT-GAAATACCCTTG-TA-TTGTA
* *
63852242 AAATTA-TCGAAACACCCTCG-ATTTGTA
1 AAATTACT-GAAATACCCTTGTA-TTGTA
*
63852269 AAATTA-TAGAAATACCCTTG-ATTTGAA
1 AAATTACT-GAAATACCCTTGTA-TTGTA
* * *
63852296 AAATTACCGAAATACACTCG-ATTTGTA
1 AAATTACTGAAATACCCTTGTA-TTGTA
*
63852323 AAATTACTGAAATACCTTTG-ATTTGTA
1 AAATTACTGAAATACCCTTGTA-TTGTA
* * * *
63852350 AAATTA-TCGAAAAACCCCTATTTTGTA
1 AAATTACT-GAAATACCCTTGTATTGTA
* *
63852377 AAATTA-TCAAAATACCCTTGTAGTGTA
1 AAATTACT-GAAATACCCTTGTATTGTA
*
63852404 AAATTACTGAAATACCCTTGTAGTGTA
1 AAATTACTGAAATACCCTTGTATTGTA
* * * * **
63852431 AAATGACCGACATACCCCTGTAGGGTA
1 AAATTACTGAAATACCCTTGTATTGTA
63852458 AAAT
1 AAAT
63852462 GACTATTTTG
Statistics
Matches: 205, Mismatches: 32, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 195 0.95
28 4 0.02
29 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGTATTGTA
Found at i:63857747 original size:349 final size:349
Alignment explanation
Indices: 63857108--63857798 Score: 1256
Period size: 349 Copynumber: 2.0 Consensus size: 349
63857098 ATGTGGATTT
63857108 AATTTTTATGCACACGAGTTGTTCTTGCTTTGAATGTGTCTAATATTAATACTTTCTAAGCAATT
1 AATTTTTATGCACACGAGTTGTTCTTGCTTTGAATGTGTCTAATATTAATACTTTCTAAGCAATT
*
63857173 TTGCTTTATGCTATTTTGCAAAAAAAATAGATATGCATCGAGAAATGTATTTACCAAAATATGCA
66 TCGCTTTATGCTATTTTGCAAAAAAAATAGATATGCATCGAGAAATGTATTTACCAAAATATGCA
* *
63857238 TGGATGCATCAGTGGCCAAAAAGTGGGAGTTTTCTTTCCCCACTTACTGACGTCTTTATGCAAAA
131 TAGATGCATCAGTGGCCAAAAAGTGGGAGATTTCTTTCCCCACTTACTGACGTCTTTATGCAAAA
63857303 AAGTTGGTGTTCCAATGGCATCCACAAAACAATCAATGAAGCCATCCCGAAGTATCATCGATGAC
196 AAGTTGGTGTTCCAATGGCATCCACAAAACAATCAATGAAGCCATCCCGAAGTATCATCGATGAC
** *
63857368 ACTTTTTTTTCATAATACATTGAACTTCGAGCAAAATAGATAAATGAATGGAAGAAATGCCAACA
261 ACTTTTTCCTCACAATACATTGAACTTCGAGCAAAATAGATAAATGAATGGAAGAAATGCCAACA
*
63857433 AGAGGCAACAGTAATCTTGCTTTG
326 AGAAGCAACAGTAATCTTGCTTTG
* *
63857457 AATTTTTATGCACACGAGTTGTTCTTGCTTTGAGTGTGTCTAATGTTAATACTTTCTAAGCAATT
1 AATTTTTATGCACACGAGTTGTTCTTGCTTTGAATGTGTCTAATATTAATACTTTCTAAGCAATT
*
63857522 TCGCTTTATGCTATTTTGCAAAAAAAATAGATATGCATCGGGAAATGTATTTACCAAAATATGCA
66 TCGCTTTATGCTATTTTGCAAAAAAAATAGATATGCATCGAGAAATGTATTTACCAAAATATGCA
* *
63857587 TATATGCATCAGTGGCCAAAAAGTGGGAGATTTCTTTCCCCACTTACTGATGTCTTTATGCAAAA
131 TAGATGCATCAGTGGCCAAAAAGTGGGAGATTTCTTTCCCCACTTACTGACGTCTTTATGCAAAA
63857652 AAGTTGGTGTTCCAATGGCATCCACAAAACAATCAATGAAGCCATCCCGAAGTATCATCGATGAC
196 AAGTTGGTGTTCCAATGGCATCCACAAAACAATCAATGAAGCCATCCCGAAGTATCATCGATGAC
63857717 ACTTTTTCCTCACAATACATTGAACTTCGAGCAAAATAGATAAATGAATGGAAGAAATGCCAACA
261 ACTTTTTCCTCACAATACATTGAACTTCGAGCAAAATAGATAAATGAATGGAAGAAATGCCAACA
* *
63857782 AGAAGCGACCGTAATCT
326 AGAAGCAACAGTAATCT
63857799 CGACTTTGTC
Statistics
Matches: 328, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
349 328 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (349 bp):
AATTTTTATGCACACGAGTTGTTCTTGCTTTGAATGTGTCTAATATTAATACTTTCTAAGCAATT
TCGCTTTATGCTATTTTGCAAAAAAAATAGATATGCATCGAGAAATGTATTTACCAAAATATGCA
TAGATGCATCAGTGGCCAAAAAGTGGGAGATTTCTTTCCCCACTTACTGACGTCTTTATGCAAAA
AAGTTGGTGTTCCAATGGCATCCACAAAACAATCAATGAAGCCATCCCGAAGTATCATCGATGAC
ACTTTTTCCTCACAATACATTGAACTTCGAGCAAAATAGATAAATGAATGGAAGAAATGCCAACA
AGAAGCAACAGTAATCTTGCTTTG
Found at i:63859520 original size:16 final size:16
Alignment explanation
Indices: 63859499--63859529 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63859489 GCAAATCCCG
*
63859499 AAATGCCGAAAAGCCA
1 AAATGCCAAAAAGCCA
63859515 AAATGCCAAAAAGCC
1 AAATGCCAAAAAGCC
63859530 GAAAGTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.16, T:0.06
Consensus pattern (16 bp):
AAATGCCAAAAAGCCA
Found at i:63863301 original size:41 final size:41
Alignment explanation
Indices: 63863256--63863560 Score: 254
Period size: 41 Copynumber: 7.7 Consensus size: 41
63863246 GAGTGTAAAT
* * * * *
63863256 AGGGGCACATTTGTGCTATTCAAGGGTACTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * * * * *
63863297 AGGGGAAGGTATGTGTAATTCAAGGGTAACAAAGTATAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * *
63863338 AGGGGCACGTATGTGCGATTCAGGGGTACCAAAGTA-TAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * *
63863378 TAGGTGCACGTATGTACAATTTA-GGG-ACCGAAGTACAAAT
1 -AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * *
63863418 AGGGGCATGTATGTGCAATTTAGGGGTACCAAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* *
63863459 ATGGG--C--A--TGC-ATTCAGGGGTACTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * *
63863493 ATGGGCACGTATATGCAATTTAGGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* *
63863534 AGGGG-ATTGTATATGCAATTCAGGGGT
1 AGGGGCA-CGTATGTGCAATTCAGGGGT
63863561 TAACTAACTA
Statistics
Matches: 213, Mismatches: 39, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
34 26 0.12
35 3 0.01
36 1 0.00
37 1 0.00
38 1 0.00
39 27 0.13
40 15 0.07
41 139 0.65
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.23
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
Found at i:63866181 original size:40 final size:40
Alignment explanation
Indices: 63866126--63866329 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
63866116 TGAATGATAC
* * * *
63866126 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
63866166 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
63866206 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
63866246 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
63866286 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
63866326 CCGG
1 CCGG
63866330 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:63866259 original size:80 final size:80
Alignment explanation
Indices: 63866122--63866333 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
63866112 CAATTGAATG
* * * *
63866122 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
63866186 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
63866202 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
63866267 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
63866282 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
63866334 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:63874365 original size:16 final size:16
Alignment explanation
Indices: 63874328--63874372 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
63874318 CAATTGTGTT
63874328 TAAT-GAAATGATGTG
1 TAATGGAAATGATGTG
63874343 TAAATGGAAATGTATGTG
1 T-AATGGAAATG-ATGTG
63874361 T-ATGG-AATGATG
1 TAATGGAAATGATG
63874373 CCATCGTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 3 0.11
15 5 0.19
16 7 0.26
17 6 0.22
18 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (16 bp):
TAATGGAAATGATGTG
Found at i:63874468 original size:42 final size:42
Alignment explanation
Indices: 63874421--63874527 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
63874411 TATTGGTCTC
63874421 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
63874463 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
63874505 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
63874528 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:63874589 original size:26 final size:28
Alignment explanation
Indices: 63874535--63874603 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
63874525 AAAATTGTAC
**
63874535 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
63874563 AGCACTATGTGTGCG-AGCTGATT-TAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
63874589 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63874604 GATTCACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 17 0.46
27 6 0.16
28 14 0.38
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:63883587 original size:384 final size:383
Alignment explanation
Indices: 63882839--63883602 Score: 1510
Period size: 384 Copynumber: 2.0 Consensus size: 383
63882829 TCAAGTTTTT
63882839 GGTGCATATTCGGTTAGGTGTATAATCGACCAAATGGGCATTAGTAAGAATGGTTGCCGAATATA
1 GGTGCATATTCGGTTAGGTGTATAATCGACCAAATGGGCATTAGTAAGAATGGTTGCCGAATATA
63882904 CAAGCATACATATGCATGTGTAGTTGAATTATGAATGTTTAGCAAGATGGTTAAACTAGTGATTT
66 CAAGCATACATATGCATGTGTAGTTGAATTATGAATGTTTAGCAAGATGGTTAAACTAGTGATTT
63882969 ATTGATTAAGCTCAAGGAGTTAAAGAAGGAGAATCAAGCAAGGGAAAGACGAAGGTCATCGAGTA
131 ATTGATTAAGCTCAAGGAGTTAAAGAAGGAGAATCAAGCAAGGGAAAGACGAAGGTCATCGAGTA
63883034 GCCGACTTGGAACTATTTTACCCAACACGAGGTAAGTCATTAAGCATATATTTGGTGTTGATTTG
196 GCCGACTTGGAACTATTTTACCCAACACGAGGTAAGTCATTAAGCATATATTTGGTGTTGATTTG
63883099 AATGATCATAATATATATGCAAATGTGTTTAAATGAGTTGATGTGTAAATGGAAATGTATGTGTA
261 AATGATCATAATATATATGCAAATGTGTTTAAATGAGTTGATGTGTAAATGGAAATGTATGTGTA
*
63883164 TGGAATGATGCCATTGTTGAATGTATAAAGGCAGCAAAATGCATAAGGTATTGGTCTC
326 TGGAATGATGCCATTGTTGAATGTATAAAGGCAGCAAAATGCATAAAGTATTGGTCTC
63883222 GGTGCATATTCGGTTAGGTGTATAATCGACCAAATGGGCGATTAGTAAGAATGGTTGCCGAATAT
1 GGTGCATATTCGGTTAGGTGTATAATCGACCAAATGGGC-ATTAGTAAGAATGGTTGCCGAATAT
63883287 ACAAGCATACATATGCATGTGTAGTTGAATTATGAATGTTTAGCAAGATGGTTAAACTAGTGATT
65 ACAAGCATACATATGCATGTGTAGTTGAATTATGAATGTTTAGCAAGATGGTTAAACTAGTGATT
63883352 TATTGATTAAGCTCAAGGAGTTAAAGAAGGAGAATCAAGCAAGGGAAAGACGAAGGTCATCGAGT
130 TATTGATTAAGCTCAAGGAGTTAAAGAAGGAGAATCAAGCAAGGGAAAGACGAAGGTCATCGAGT
63883417 AGCCGACTTGGAACTATTTTACCCAACACGAGGTAAGTCATTAAGCATATATTTGGTGTTGATTT
195 AGCCGACTTGGAACTATTTTACCCAACACGAGGTAAGTCATTAAGCATATATTTGGTGTTGATTT
63883482 GAATGATCATAATATATATGCAAATGTGTTTAAATGAGTTGATGTGTAAATGGAAATGTATGTGT
260 GAATGATCATAATATATATGCAAATGTGTTTAAATGAGTTGATGTGTAAATGGAAATGTATGTGT
63883547 ATGGAATGATGCCATTGTTGAATGTATAAAGGCAGCAAAATGCATAAAGTATTGGT
325 ATGGAATGATGCCATTGTTGAATGTATAAAGGCAGCAAAATGCATAAAGTATTGGT
63883603 ATCAGAGCTA
Statistics
Matches: 379, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
383 39 0.10
384 340 0.90
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (383 bp):
GGTGCATATTCGGTTAGGTGTATAATCGACCAAATGGGCATTAGTAAGAATGGTTGCCGAATATA
CAAGCATACATATGCATGTGTAGTTGAATTATGAATGTTTAGCAAGATGGTTAAACTAGTGATTT
ATTGATTAAGCTCAAGGAGTTAAAGAAGGAGAATCAAGCAAGGGAAAGACGAAGGTCATCGAGTA
GCCGACTTGGAACTATTTTACCCAACACGAGGTAAGTCATTAAGCATATATTTGGTGTTGATTTG
AATGATCATAATATATATGCAAATGTGTTTAAATGAGTTGATGTGTAAATGGAAATGTATGTGTA
TGGAATGATGCCATTGTTGAATGTATAAAGGCAGCAAAATGCATAAAGTATTGGTCTC
Found at i:63888080 original size:42 final size:42
Alignment explanation
Indices: 63888033--63888139 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
63888023 TATTGGTCTC
63888033 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
63888075 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
63888117 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
63888140 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:63888204 original size:27 final size:28
Alignment explanation
Indices: 63888147--63888216 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
63888137 AAAATTGTAC
**
63888147 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
63888175 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
63888202 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63888217 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:63891025 original size:40 final size:40
Alignment explanation
Indices: 63890952--63891133 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
63890942 ATACCCGAGC
* * * *
63890952 TAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGT
*
63890992 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
* *
63891032 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
63891072 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
63891112 TAAGACCCGAAGGCAATTGTGC
1 TAAGACCCGAAGGCATTTGTGC
63891134 TTGTGGTTAT
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 127 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
Found at i:63891090 original size:80 final size:80
Alignment explanation
Indices: 63890942--63891153 Score: 302
Period size: 80 Copynumber: 2.7 Consensus size: 80
63890932 CAATTGAATG
* * * * *
63890942 ATACCCGAGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
63891006 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
63891022 ATATCCGGTTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
63891087 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
63891102 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
63891154 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
79 6 0.05
80 109 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:63897670 original size:98 final size:97
Alignment explanation
Indices: 63897558--63897742 Score: 264
Period size: 98 Copynumber: 1.9 Consensus size: 97
63897548 GCACATCAAA
* *
63897558 GTCGATGCCATGTCCCAGACAGGTCTTAAACT-GACTTTCATATATCGAGGCCGAGGCCGTGTCC
1 GTCGATGCCATGTCCCAGACAGGTCTTAAACTAG-CTTGCATATATCGAGGCCGAGG-CATGTCC
* *
63897622 TAGACAGGTCTTACACTGGCTCTCATCTATCGGT
64 CAGACAGGTCTTACACTAGCTCTCATCTATCGGT
* * * *
63897656 GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCTGATGCATGTCCCA
1 GTCGATGCCATGTCCCAGACAGGTCTTAAACTAGCTTGCATATATCGAGGCCGAGGCATGTCCCA
*
63897721 GACATGTCTTACACTAGCTCTC
66 GACAGGTCTTACACTAGCTCTC
63897743 GTCTCAACAC
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
97 27 0.35
98 49 0.64
99 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGACAGGTCTTAAACTAGCTTGCATATATCGAGGCCGAGGCATGTCCCA
GACAGGTCTTACACTAGCTCTCATCTATCGGT
Found at i:63897733 original size:48 final size:49
Alignment explanation
Indices: 63897513--63897739 Score: 200
Period size: 49 Copynumber: 4.7 Consensus size: 49
63897503 GTAAAATGCC
* * * * * *
63897513 GATGCCATGTCCCAGACATGGTCTTACAGTGGCTAGC--ACATCAAAG-T
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTTGCATATATCGAGGCT
* * *
63897560 CGATGCCATGTCCCAGACAGGTCTTAAACT-GACTTTCATATATCGAGGCC
1 -GATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGCATATATCGAGGCT
* * * * *
63897610 GAGGCCGTGTCCTAGACAGGTCTTACACTGGCTCT-CATCTATCG-GTG-T
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATATATCGAG-GCT
*
63897658 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCT
1 -GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCT
*
63897708 GATG-CATGTCCCAGACATGTCTTACACTAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT
63897740 CTCGTCTCAA
Statistics
Matches: 147, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
46 1 0.01
47 12 0.08
48 47 0.32
49 83 0.56
50 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCT
Found at i:63898692 original size:17 final size:17
Alignment explanation
Indices: 63898670--63898711 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
63898660 CGTGTGCTAA
63898670 GCCGTGTTCTCCACATG
1 GCCGTGTTCTCCACATG
63898687 GCCGTGTTCTCCACATG
1 GCCGTGTTCTCCACATG
*
63898704 GTCGTGTT
1 GCCGTGTT
63898712 GTAATAGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.10, C:0.31, G:0.26, T:0.33
Consensus pattern (17 bp):
GCCGTGTTCTCCACATG
Found at i:63900400 original size:2 final size:2
Alignment explanation
Indices: 63900393--63900424 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
63900383 CCTATTGGTG
63900393 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63900425 TTATGCGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63901817 original size:21 final size:21
Alignment explanation
Indices: 63901770--63901811 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
63901760 AAGAAGTTGA
63901770 TAATTTGTTATATTATATATG
1 TAATTTGTTATATTATATATG
*
63901791 TAATTTGTTTTTATTATATAT
1 TAATTTG-TTATATTATATAT
63901812 TGATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TAATTTGTTATATTATATATG
Found at i:63901824 original size:22 final size:23
Alignment explanation
Indices: 63901775--63901825 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
63901765 GTTGATAATT
* *
63901775 TGTTATATTATATATGTAATTTG
1 TGTTTTATTATATATGTAATTTA
*
63901798 T-TTTTATTATATAT-TGATTTA
1 TGTTTTATTATATATGTAATTTA
63901819 TGTTTTA
1 TGTTTTA
63901826 AACTATGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.25
22 17 0.71
23 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (23 bp):
TGTTTTATTATATATGTAATTTA
Found at i:63911748 original size:49 final size:49
Alignment explanation
Indices: 63911676--63911954 Score: 220
Period size: 49 Copynumber: 5.6 Consensus size: 49
63911666 CTAGTATGCA
*
63911676 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
*
63911725 TAGTAGCCTGCACTTAGTACTACATACAT--GACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTAC--ACATGCGACC-AACCATCTGATACACG
* *** * *** * * * *
63911775 TAGTAGCTTGCACTTAGTACTACACACATGATCGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-CCATCTGATACACG
* * * * *
63911826 TAGTAGCCTGCGCTTAGTACTACACATGCGACCTACTATATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
* * * * * * *
63911875 TAGGAGCCTGCACTTTGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC---AACCATCTGATACACG
* *
63911927 TAGTAGCCTTCACATAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
63911955 TGTTCTCACA
Statistics
Matches: 177, Mismatches: 43, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
48 3 0.02
49 63 0.36
50 42 0.24
51 37 0.21
52 32 0.18
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
Found at i:63911952 original size:150 final size:149
Alignment explanation
Indices: 63911673--63911954 Score: 390
Period size: 150 Copynumber: 1.9 Consensus size: 149
63911663 TATCTAGTAT
* *
63911673 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGATACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTGCAC
* * * *
63911738 TTAGTACTACATACATGACCTAACCATTTGATACACGTAGTAGCTTGCACTTAGTACTACACACA
66 TTAGTACTACACACATGACCTAACCATTTGAAACACATAGTAGCTTGCACATAGTACTA-ACACA
63911803 TGATCGAAGTTGTCGGGTAC
130 TGATCGAAGTTGTCGGGTAC
* * * *
63911823 GCATAGTAGCCTGCGCTTAGTACTACACATGCGACCTACTATATGGTACACGTAGGAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTGCAC
* *
63911888 TTTGTACTACACACGTGACCTAAAACCATCTT-AAACACATAGTAGCCTT-CACATAGTACT-AC
66 TTAGTACTACACACATGACCT--AACCAT-TTGAAACACATAGTAG-CTTGCACATAGTACTAAC
63911950 ACATG
127 ACATG
63911955 TGTTCTCACA
Statistics
Matches: 116, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
150 84 0.72
152 27 0.23
153 5 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (149 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTGCAC
TTAGTACTACACACATGACCTAACCATTTGAAACACATAGTAGCTTGCACATAGTACTAACACAT
GATCGAAGTTGTCGGGTAC
Done.