Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 227 of 444
Found at i:63912701 original size:16 final size:17
Alignment explanation
Indices: 63912680--63912718 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
63912670 TCTATAATGC
63912680 CCCAAAAATCTCGAAA-
1 CCCAAAAATCTCGAAAT
*
63912696 CCCAAAAATCTTGAAAT
1 CCCAAAAATCTCGAAAT
63912713 CCCAAA
1 CCCAAA
63912719 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.31, G:0.05, T:0.15
Consensus pattern (17 bp):
CCCAAAAATCTCGAAAT
Found at i:63914011 original size:16 final size:16
Alignment explanation
Indices: 63913992--63914050 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
63913982 GCAAATCCCA
**
63913992 AAAAGCCGAAATACCG
1 AAAAGCCGAAATGTCG
**
63914008 AAAAGTAGAAATGTCG
1 AAAAGCCGAAATGTCG
*
63914024 AAAAGTCGAAATGTCG
1 AAAAGCCGAAATGTCG
63914040 AAAAGCCGAAA
1 AAAAGCCGAAA
63914051 GTTTGGCTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.51, C:0.15, G:0.22, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATGTCG
Found at i:63914018 original size:8 final size:8
Alignment explanation
Indices: 63914006--63914050 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
63913996 GCCGAAATAC
63914006 CGAAAAGT
1 CGAAAAGT
* *
63914014 AGAAATGT
1 CGAAAAGT
63914022 CGAAAAGT
1 CGAAAAGT
*
63914030 CGAAATGT
1 CGAAAAGT
*
63914038 CGAAAAGC
1 CGAAAAGT
63914046 CGAAA
1 CGAAA
63914051 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.13, G:0.24, T:0.13
Consensus pattern (8 bp):
CGAAAAGT
Found at i:63914327 original size:29 final size:28
Alignment explanation
Indices: 63914264--63914329 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
63914254 AGCATGACTG
*
63914264 TAAATGTGATTTGGGCCTAGTGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATA
*
63914292 TGAATGTGATTTGGGCCTAATAGGCC-TCA
1 TAAATGTGATTTGGGCCTAAT-GGCCAT-A
63914321 TAAATGTGA
1 TAAATGTGA
63914330 ATGGCCATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCATA
Found at i:63917659 original size:2 final size:2
Alignment explanation
Indices: 63917652--63917682 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
63917642 TGTACCTTCC
63917652 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63917683 CAAACGAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63921338 original size:49 final size:49
Alignment explanation
Indices: 63921266--63921549 Score: 273
Period size: 49 Copynumber: 5.7 Consensus size: 49
63921256 AAGCTATTTT
* * * *
63921266 GTACACATAATAGCCTGCACTTAGTACTGCACATGTGACCAACAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTG
*
63921315 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCTG
* * * * * *** *
63921365 ATACACGTAATAGGCTGCACTTAGTACTACACACGTGATCGAAGTTGTCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCTG
* * * * * * *
63921416 GTACGCATAGTAGCCTGGACTTAGTACTACACATGCGACCTACTATATG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTG
** *
63921465 GTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC---AACCATC-TG
*
63921518 G-ACACATAGTAGCCTGCACATAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
63921550 TGTGTTCTTA
Statistics
Matches: 188, Mismatches: 40, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
49 73 0.39
50 47 0.25
51 34 0.18
52 32 0.17
53 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTG
Found at i:63921526 original size:101 final size:100
Alignment explanation
Indices: 63921267--63921551 Score: 297
Period size: 101 Copynumber: 2.8 Consensus size: 100
63921257 AGCTATTTTG
* * * *
63921267 TACACATAATAGCCTGCACTTAGTACTGCACATGTGACC-AACAATCTGGTACACGTAGTAGCCT
1 TACACGTAATAGCCTGCACTTAGTACTACACACGTGACCAAACAATCTGGTACACATAGTAGCCT
* * *
63921331 GCACTTAGTACTACACACGTGACCAAACCATCTGA
66 GCACTTAGTACTACACATGCGACCAAACCATATGA
* * **** * *
63921366 TACACGTAATAGGCTGCACTTAGTACTACACACGTGATCGAAGTTGTCGGGTACGCATAGTAGCC
1 TACACGTAATAGCCTGCACTTAGTACTACACACGTGA-CCAAACAATCTGGTACACATAGTAGCC
* * * *
63921431 TGGACTTAGTACTACACATGCGACC-TACTATATGG
65 TGCACTTAGTACTACACATGCGACCAAACCATATGA
* * * *
63921466 TACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAG-ACACATAGTAG
1 TACACGTAATAGCCTGCACTTAGTACTACACACGTGACC--AAACAATC-TGGTACACATAGTAG
*
63921530 CCTGCACATAGTACTACACATG
63 CCTGCACTTAGTACTACACATG
63921552 TGTTCTTACA
Statistics
Matches: 149, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
99 34 0.23
100 41 0.28
101 73 0.49
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
TACACGTAATAGCCTGCACTTAGTACTACACACGTGACCAAACAATCTGGTACACATAGTAGCCT
GCACTTAGTACTACACATGCGACCAAACCATATGA
Found at i:63927401 original size:2 final size:2
Alignment explanation
Indices: 63927394--63927426 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
63927384 CAAAATAATG
*
63927394 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63927427 GGAAGGGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63929676 original size:21 final size:21
Alignment explanation
Indices: 63929652--63929706 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
63929642 AAAACAGGGC
*
63929652 ACACATCCGTGTGGAAGGGTA
1 ACACACCCGTGTGGAAGGGTA
63929673 ACACACCCGTGTGGAAGGGTA
1 ACACACCCGTGTGGAAGGGTA
63929694 ACACACCCGTGTG
1 ACACACCCGTGTG
63929707 ACTATTTCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.27, C:0.25, G:0.31, T:0.16
Consensus pattern (21 bp):
ACACACCCGTGTGGAAGGGTA
Found at i:63930912 original size:47 final size:48
Alignment explanation
Indices: 63930841--63930963 Score: 130
Period size: 47 Copynumber: 2.6 Consensus size: 48
63930831 TAAGGTGTCG
* * * * *
63930841 ATGCCATGTCCTAGACACGATCTTACTCT-AGCTCA-CATCTC-AAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTCGAAGCCA
* *
63930888 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGCCA
63930936 ATG-CATGTCCCAGACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
63930964 GCTTACTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
46 12 0.18
47 47 0.71
48 7 0.11
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGCCA
Found at i:63931078 original size:130 final size:130
Alignment explanation
Indices: 63930845--63931092 Score: 322
Period size: 130 Copynumber: 1.9 Consensus size: 130
63930835 GTGTCGATGC
* * *
63930845 CATGTCCTAGACACGATCTTACTCTAGCTCACATCTCAAGTCAATGCCATGTCCCAGACATGGTC
1 CATGTCCTAGACACGATCTTACACTAGCCCACATCTCAAGCCAATGCCATGTCCCAGACATGGTC
* * *
63930910 TTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACTTATG
66 TTACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACTTATG
* *
63930975 CATGTCCTAGACATG-TCTTACACTAGCCCTCATCTCAATGCCGAA-GCCATGTCCCAGACATGG
1 CATGTCCTAGACACGATCTTACACTAGCCCACATCTCAA-GCC-AATGCCATGTCCCAGACATGG
* * * * * *
63931038 TCTTACATTGGCTTTCATAAT-ATGGTCAATGCATGTCCCAGACATGTTTTACACT
64 TCTTACACTGACTATCAT-ATCATAGCCAATGCATGTCCCAGACATGTCTTACACT
63931093 AGCTCACACA
Statistics
Matches: 101, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
129 20 0.20
130 78 0.77
131 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (130 bp):
CATGTCCTAGACACGATCTTACACTAGCCCACATCTCAAGCCAATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACTTATG
Found at i:63936737 original size:16 final size:16
Alignment explanation
Indices: 63936716--63936748 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
63936706 GGCTTCTCTT
63936716 GTAACACCCCAAACTC
1 GTAACACCCCAAACTC
63936732 GTAACACCCCAAACTC
1 GTAACACCCCAAACTC
63936748 G
1 G
63936749 GCGTAGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.42, G:0.09, T:0.12
Consensus pattern (16 bp):
GTAACACCCCAAACTC
Found at i:63937337 original size:27 final size:27
Alignment explanation
Indices: 63937307--63937374 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
63937297 AGAGCATACA
* * * *
63937307 TGGGCCACAGCCCGTTACAGTATCATT
1 TGGGCCACAGCCCATAACAGAATCAAT
*
63937334 TGGGTCACAGCCCATAACAGAATCAAT
1 TGGGCCACAGCCCATAACAGAATCAAT
*
63937361 TGGGCC-TAGCCCAT
1 TGGGCCACAGCCCAT
63937375 CTTAGCCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 7 0.21
27 27 0.79
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (27 bp):
TGGGCCACAGCCCATAACAGAATCAAT
Found at i:63937418 original size:11 final size:11
Alignment explanation
Indices: 63937402--63937427 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63937392 CGAAGCCCAC
63937402 ATCACAATAAT
1 ATCACAATAAT
63937413 ATCACAATAAT
1 ATCACAATAAT
63937424 ATCA
1 ATCA
63937428 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:63937848 original size:27 final size:27
Alignment explanation
Indices: 63937814--63937890 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
63937804 GGGCAAAATA
* **
63937814 GTCATTTTACCCTACGGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
63937841 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
63937868 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
63937891 TTTGATAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:63937875 original size:54 final size:54
Alignment explanation
Indices: 63937817--63938147 Score: 206
Period size: 54 Copynumber: 6.1 Consensus size: 54
63937807 CAAAATAGTC
* ** * * * *
63937817 ATTTTACCCTACGGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACAAAT-CAAGGGTATTTCAGTA
* * *
63937871 ATTTTACACTACAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTAGTA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCAGTA
* * * * * * *
63937925 ATTTTACA-AATCAATGGTATTTTGAAAATTTTACAAATCGAA-GGTGTTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCGATAATTTTACAAATC-AAGGGTATTTCAGTA
* * * * * * *
63937979 ATTTTACA-AATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCAGTA
* * * * * * ** *
63938033 ATTTCACA-AATTAGGGGTATTTTGATAATTTTACAAATTGAGGGTATTTTAGTA
1 ATTTTACACTA-CAAGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCAGTA
* * * * * * * *
63938087 ATTTCACAAT-CAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCAGTA
63938140 ATTTTACA
1 ATTTTACA
63938148 AATTGAGGGT
Statistics
Matches: 231, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
53 45 0.19
54 182 0.79
55 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCAGTA
Found at i:63937944 original size:81 final size:81
Alignment explanation
Indices: 63937855--63938224 Score: 397
Period size: 81 Copynumber: 4.6 Consensus size: 81
63937845 TTTTACACTA
* * *
63937855 CAAGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATCAAGGGTATT
1 CAAGGGTATTTCGGTAATTTTACAAAT-CAAGGGTATTTCGATAATTTTACAAATCGAGGGTATT
63937919 TTAGTAATTTTACAAAT
65 TTAGTAATTTTACAAAT
* * ** * * *
63937936 CAATGGTATTTTGAAAATTTTACAAATCGAA-GGTGTTTCGGTAATTTTACAAATCGAGGGT-GT
1 CAAGGGTATTTCGGTAATTTTACAAATC-AAGGGTATTTCGATAATTTTACAAATCGAGGGTATT
*
63937999 TTCGATAATTTTACAAAT
65 TTAG-TAATTTTACAAAT
* * * * * * *
63938017 CGAGGGTGTTTCGGTAATTTCACAAATTAGGGGTATTTTGATAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
*
63938082 TAGTAATTTCAC-AAT
66 TAGTAATTTTACAAAT
* * * * *
63938097 CAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCAATAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
* * *
63938162 TGGTAATTTTATAAAC
66 TAGTAATTTTACAAAT
* * * * *
63938178 CGAGGGTACTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTT
63938225 CTCTTTATTA
Statistics
Matches: 239, Mismatches: 44, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
80 76 0.32
81 155 0.65
82 8 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
TAGTAATTTTACAAAT
Found at i:63938185 original size:54 final size:54
Alignment explanation
Indices: 63937857--63938224 Score: 386
Period size: 54 Copynumber: 6.8 Consensus size: 54
63937847 TTACACTACA
* * * *
63937857 AGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTTGATAATTTTACAAATCG
* * * *
63937911 AGGGTATTTTAGTAATTTTACAAATCAATGGTATTTTGAAAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
* * * * *
63937965 AAGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
* * * * *
63938019 AGGGTGTTTCGGTAATTTCACAAAT-TAGGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTTGATAATTTTACAAATCG
* * * * *
63938073 AGGGTATTTTAGTAATTTCAC-AATCAAGGGTATTTTGGTAATTTTACAAAT-T
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
* * * * *
63938125 AGGGGTATTTCAATAATTTTACAAATTGAGGGTATTTTGGTAATTTTATAAACCG
1 A-GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
* **
63938180 AGGGTACTTC-GATAATTTTACAAATCGAGGGTATTTCAATAATTT
1 AGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTTGATAATTT
63938225 CTCTTTATTA
Statistics
Matches: 266, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.00
53 44 0.17
54 218 0.82
55 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
Found at i:63938221 original size:27 final size:27
Alignment explanation
Indices: 63937857--63938224 Score: 343
Period size: 27 Copynumber: 13.7 Consensus size: 27
63937847 TTACACTACA
* * *
63937857 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
* *
63937884 AGGGTATTTTGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
63937911 AGGGTATTT-TAGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
63937938 ATGGTATTTTGAAAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
63937965 AAGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
63937992 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
63938019 AGGGTGTTTCGGTAATTTCACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
* *
63938045 AGGGGTATTTTGATAATTTTACAAATTG
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
63938073 AGGGTATTT-TAGTAATTTCAC-AATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
63938099 AGGGTATTTTGGTAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
* *
63938125 AGGGGTATTTCAATAATTTTACAAATTG
1 A-GGGTATTTCGATAATTTTACAAATCG
* * * *
63938153 AGGGTATTTTGGTAATTTTATAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
63938180 AGGGTACTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
63938207 AGGGTATTTCAATAATTT
1 AGGGTATTTCGATAATTT
63938225 CTCTTTATTA
Statistics
Matches: 283, Mismatches: 48, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
26 24 0.08
27 254 0.90
28 5 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:63938583 original size:28 final size:28
Alignment explanation
Indices: 63938531--63938604 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
63938521 CTTATTCATT
* * *
63938531 TGGCCCATTTAGGCCAAATCTCATTCACA
1 TGGCCCA-TCAGGCCCAATCACATTCACA
*
63938560 TGGCCCATCAGGCCCAATCACATTCATA
1 TGGCCCATCAGGCCCAATCACATTCACA
63938588 TGGCCCATCAGGCCCAA
1 TGGCCCATCAGGCCCAA
63938605 CTATTTCCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 34 0.83
29 7 0.17
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (28 bp):
TGGCCCATCAGGCCCAATCACATTCACA
Found at i:63942983 original size:29 final size:29
Alignment explanation
Indices: 63942921--63943023 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
63942911 GTGACGAGAT
* * *
63942921 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63942950 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
63942979 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
63943008 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63943024 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63946442 original size:12 final size:12
Alignment explanation
Indices: 63946407--63946444 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63946397 CTTCACATCA
**
63946407 TTCTCTCATTCC
1 TTCTCTCATTTT
63946419 TTCTCTCA-TTT
1 TTCTCTCATTTT
63946430 TTCTCTCATTTT
1 TTCTCTCATTTT
63946442 TTC
1 TTC
63946445 CATTCCATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.61
Consensus pattern (12 bp):
TTCTCTCATTTT
Found at i:63946443 original size:13 final size:11
Alignment explanation
Indices: 63946407--63946442 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
63946397 CTTCACATCA
*
63946407 TTCTCTCATTCC
1 TTCTCTCATT-T
63946419 TTCTCTCATTT
1 TTCTCTCATTT
63946430 TTCTCTCATTT
1 TTCTCTCATTT
63946441 TT
1 TT
63946443 TCCATTCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.61
Consensus pattern (11 bp):
TTCTCTCATTT
Found at i:63950448 original size:46 final size:46
Alignment explanation
Indices: 63950396--63950658 Score: 193
Period size: 47 Copynumber: 5.7 Consensus size: 46
63950386 TTGGGCATCC
*
63950396 GAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGTGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCT
* *** * ** * *
63950442 GAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACT-AGGTATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTGA-ATGTCT
* * *
63950489 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCT
* *
63950535 GAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G--TCT
* * * * * *
63950582 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGA--TG-ACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCT
*
63950625 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63950659 GCAGGTTACA
Statistics
Matches: 168, Mismatches: 35, Indels: 31
0.72 0.15 0.13
Matches are distributed among these distances:
42 3 0.02
43 38 0.23
44 1 0.01
45 2 0.01
46 57 0.34
47 61 0.36
48 2 0.01
49 1 0.01
50 2 0.01
51 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCT
Found at i:63950531 original size:93 final size:92
Alignment explanation
Indices: 63950389--63950651 Score: 404
Period size: 93 Copynumber: 2.9 Consensus size: 92
63950379 AGGATATTTG
* * *
63950389 GGCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGTGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCGAACTCGTTGAG
*
63950454 TTGAGTCCAAGTTCGAGAGATGTAACTA
65 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
63950482 GGTATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCGAACTCGTTGAG
63950547 TTGAGTCCGAGTTCGAGAGATGTAACTA
65 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
63950575 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGAT-G-ACGCCCGAACTCGTTGAGT
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCGAACTCGTTGAGT
63950638 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63950652 CTTATGGGCA
Statistics
Matches: 157, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
90 31 0.20
91 1 0.01
93 125 0.80
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (92 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63957242 original size:42 final size:42
Alignment explanation
Indices: 63957187--63957279 Score: 186
Period size: 42 Copynumber: 2.2 Consensus size: 42
63957177 CATGGGGATG
63957187 AACCGTGTGTCACACATGGCCTAGACACACGCCCGTGTGTCT
1 AACCGTGTGTCACACATGGCCTAGACACACGCCCGTGTGTCT
63957229 AACCGTGTGTCACACATGGCCTAGACACACGCCCGTGTGTCT
1 AACCGTGTGTCACACATGGCCTAGACACACGCCCGTGTGTCT
63957271 AACCGTGTG
1 AACCGTGTG
63957280 GACCTTAATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.22, C:0.32, G:0.25, T:0.22
Consensus pattern (42 bp):
AACCGTGTGTCACACATGGCCTAGACACACGCCCGTGTGTCT
Found at i:63968712 original size:3 final size:3
Alignment explanation
Indices: 63968693--63968760 Score: 64
Period size: 3 Copynumber: 22.7 Consensus size: 3
63968683 CTTTACAGCC
* * * * * *
63968693 ATT ATC ATT ACT ATT ATT ATT ATT ATA ATT ATT CTT ATT CTT ATT CTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
63968741 CTT ATT ATT ATT ACT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
63968761 CATCTTCTTT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:63973076 original size:22 final size:22
Alignment explanation
Indices: 63973048--63973092 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
63973038 TTGCAGATTG
63973048 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
63973070 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
63973092 T
1 T
63973093 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:63977641 original size:11 final size:11
Alignment explanation
Indices: 63977625--63977664 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
63977615 GAGTGTAGGA
63977625 ATATTTTGTAG
1 ATATTTTGTAG
*
63977636 ATATTTTAGGA-
1 ATATTTT-GTAG
63977647 ATATTTTGTAG
1 ATATTTTGTAG
63977658 ATATTTT
1 ATATTTT
63977665 TTATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 2 0.08
11 21 0.84
12 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (11 bp):
ATATTTTGTAG
Found at i:63977648 original size:22 final size:22
Alignment explanation
Indices: 63977620--63977664 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
63977610 AGGGGGAGTG
63977620 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTTTGTAGATATTT
63977642 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTTTGTAGATATTT
63977664 T
1 T
63977665 TTATTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (22 bp):
TAGGAATATTTTGTAGATATTT
Found at i:63977900 original size:25 final size:25
Alignment explanation
Indices: 63977866--63977916 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
63977856 AAGCTTAGCT
63977866 TTCACATAGTTTGTCTCTAGTTCAA
1 TTCACATAGTTTGTCTCTAGTTCAA
63977891 TTCACATAGTTTGTCTCTAGTTCAA
1 TTCACATAGTTTGTCTCTAGTTCAA
63977916 T
1 T
63977917 GTTAGCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.45
Consensus pattern (25 bp):
TTCACATAGTTTGTCTCTAGTTCAA
Found at i:63983121 original size:40 final size:40
Alignment explanation
Indices: 63983059--63983262 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
63983049 AAACCAAGTA
* * *
63983059 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63983098 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63983138 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63983178 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63983217 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63983257 CCTTCG
1 CCTTCG
63983263 TTATCATCCT
Statistics
Matches: 156, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 52 0.33
40 104 0.67
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63983211 original size:79 final size:80
Alignment explanation
Indices: 63983059--63983262 Score: 333
Period size: 79 Copynumber: 2.6 Consensus size: 80
63983049 AAACCAAGTA
* * *
63983059 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
63983122 GTAGCTCGCACAAATG
65 GTAACTCGCACAAATG
63983138 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
63983202 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
63983217 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCG
63983263 TTATCATCCT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
79 82 0.69
80 36 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:63990117 original size:40 final size:40
Alignment explanation
Indices: 63990055--63990259 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
63990045 AAACCAAGTA
* * *
63990055 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63990094 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63990134 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63990174 CCTTCGGGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63990214 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63990254 CCTTCG
1 CCTTCG
63990260 TTATCATCTG
Statistics
Matches: 155, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.08
40 142 0.92
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63993923 original size:41 final size:41
Alignment explanation
Indices: 63993815--63993924 Score: 98
Period size: 41 Copynumber: 2.7 Consensus size: 41
63993805 CACATACCTG
* * * * * *
63993815 CACAAGGCCTGCTAGACTCAAAGTCTGATTTTATACGCCAG
1 CACAAGGCCTGCTAGGCTCAAAGCCCGATTTAATACACCAA
* * * *
63993856 CA-ATAAGCCTACTAGGCAT-AACGCCCGATTTAATTCACCAA
1 CACA-AGGCCTGCTAGGC-TCAAAGCCCGATTTAATACACCAA
63993897 CACAAGGCCTGCTAGGCTCAAAGCCCGA
1 CACAAGGCCTGCTAGGCTCAAAGCCCGA
63993925 ATATTGCTAT
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.04
41 48 0.92
42 2 0.04
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (41 bp):
CACAAGGCCTGCTAGGCTCAAAGCCCGATTTAATACACCAA
Found at i:63995097 original size:14 final size:16
Alignment explanation
Indices: 63995074--63995106 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
63995064 TAAATCACGA
63995074 AAATTCCACACAT-AT
1 AAATTCCACACATAAT
63995089 AAATT-CACACATAAT
1 AAATTCCACACATAAT
63995104 AAA
1 AAA
63995107 CACTGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTCCACACATAAT
Found at i:63995524 original size:22 final size:22
Alignment explanation
Indices: 63995492--63995560 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
63995482 TATGCACTAT
63995492 TAAACAGAGAGCACAAATGTGC
1 TAAACAGAGAGCACAAATGTGC
*
63995514 TAAACAAAGAGCACAAATGTGC
1 TAAACAGAGAGCACAAATGTGC
* *
63995536 TAAACAGAGAGCACTAACGTGC
1 TAAACAGAGAGCACAAATGTGC
63995558 TAA
1 TAA
63995561 TTATCAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.14
Consensus pattern (22 bp):
TAAACAGAGAGCACAAATGTGC
Found at i:64000390 original size:22 final size:22
Alignment explanation
Indices: 64000360--64000402 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
64000350 AAGTCAACAG
* *
64000360 GACGACTCAATGTCGTAGACAA
1 GACGACTCAACGCCGTAGACAA
*
64000382 GACGGCTCAACGCCGTAGACA
1 GACGACTCAACGCCGTAGACA
64000403 GGATGGCTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.26, T:0.14
Consensus pattern (22 bp):
GACGACTCAACGCCGTAGACAA
Found at i:64000690 original size:27 final size:27
Alignment explanation
Indices: 64000660--64000716 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
64000650 ATCATCATTC
* *
64000660 TACCTTACAGGGGTATTACGGTAATTT
1 TACCCTACAGGGGCATTACGGTAATTT
*
64000687 TACCCTATAGGGGCATTACGGTAATTT
1 TACCCTACAGGGGCATTACGGTAATTT
64000714 TAC
1 TAC
64000717 AAACTGGGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (27 bp):
TACCCTACAGGGGCATTACGGTAATTT
Found at i:64002175 original size:13 final size:13
Alignment explanation
Indices: 64002157--64002185 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64002147 TTTATTTGAT
64002157 TAAGTGAACATGA
1 TAAGTGAACATGA
64002170 TAAGTGAACATGA
1 TAAGTGAACATGA
64002183 TAA
1 TAA
64002186 TTAATCTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (13 bp):
TAAGTGAACATGA
Found at i:64007068 original size:45 final size:46
Alignment explanation
Indices: 64007004--64007178 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
64006994 TGTAACCCGC
*
64007004 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
64007049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
64007099 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
64007142 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64007179 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:64007169 original size:93 final size:92
Alignment explanation
Indices: 64007011--64007181 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
64007001 CGCCCATAAG
*
64007011 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64007076 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
64007103 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64007168 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
64007182 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:64015927 original size:27 final size:28
Alignment explanation
Indices: 64015897--64015966 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64015887 ATAATAAGTC
*
64015897 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
64015924 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
64015952 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64015967 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64020430 original size:40 final size:40
Alignment explanation
Indices: 64020375--64020584 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64020365 AACATTGGAA
64020375 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64020415 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64020455 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
64020495 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
64020534 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
64020575 CTATATCCGG
1 ATATATCCGG
64020585 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:64027114 original size:40 final size:40
Alignment explanation
Indices: 64027059--64027228 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
64027049 AACATTGGAA
64027059 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64027099 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
64027139 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
64027178 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
64027219 CTATATCCGG
1 ATATATCCGG
64027229 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:64032377 original size:27 final size:28
Alignment explanation
Indices: 64032347--64032416 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64032337 ATAATAAGTC
*
64032347 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
64032374 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
64032402 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64032417 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64034350 original size:46 final size:45
Alignment explanation
Indices: 64034257--64034342 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
64034247 TACATCTCAC
* *
64034257 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* *
64034303 GAACTTGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
64034343 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:64038998 original size:24 final size:24
Alignment explanation
Indices: 64038971--64039036 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 24
64038961 CTCTTTTAAT
* **
64038971 AACTGGGTAAAGCCCGTTTCGGTA
1 AACTGGGCAAAGCCCGTTTCAATA
* *
64038995 AACTAGGACAAAGCCCTTTTCAATA
1 AACT-GGGCAAAGCCCGTTTCAATA
64039020 AACTGGGGCATAAGCCC
1 AACT-GGGCA-AAGCCC
64039037 TTTTGCACTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
24 4 0.12
25 23 0.70
26 6 0.18
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (24 bp):
AACTGGGCAAAGCCCGTTTCAATA
Found at i:64039021 original size:25 final size:25
Alignment explanation
Indices: 64038979--64039040 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
64038969 ATAACTGGGT
* **
64038979 AAAGCCCGTTTCGGTAAACTAGGAC
1 AAAGCCCTTTTCAATAAACTAGGAC
* *
64039004 AAAGCCCTTTTCAATAAACTGGGGC
1 AAAGCCCTTTTCAATAAACTAGGAC
64039029 ATAAGCCCTTTT
1 A-AAGCCCTTTT
64039041 GCACTTCCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
25 21 0.68
26 10 0.32
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAGCCCTTTTCAATAAACTAGGAC
Found at i:64039115 original size:20 final size:20
Alignment explanation
Indices: 64039090--64039146 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
64039080 TTATGAATAC
*
64039090 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
64039109 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
64039130 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
64039147 CCATGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:64039904 original size:27 final size:27
Alignment explanation
Indices: 64039842--64039906 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
64039832 CGGCATATTC
64039842 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
64039869 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
64039896 GTCTTTTTACC
1 GTCATTTTACC
64039907 TATTTGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:64039990 original size:27 final size:27
Alignment explanation
Indices: 64039960--64040189 Score: 135
Period size: 27 Copynumber: 8.4 Consensus size: 27
64039950 GTAAATCTAC
*
64039960 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
64039987 AAACTAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
64040013 AGAAAGTCAAAGGTA-TTTATGTAATTTTGT
1 --AAA-CCAAGGGTATTTTA-GTAATTTTGT
* * * **
64040043 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
*** ** * *
64040070 AAATTGAGGGTATTTCGGTAATTTCGC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * * **
64040097 AAA-CTAGTTGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * *
64040124 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
64040151 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
64040178 AAATCGAGGGTA
1 AAACCAAGGGTA
64040190 AAATGGTAAT
Statistics
Matches: 159, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
26 3 0.02
27 129 0.81
28 13 0.08
29 13 0.08
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:64040164 original size:54 final size:54
Alignment explanation
Indices: 64039937--64040175 Score: 212
Period size: 54 Copynumber: 4.4 Consensus size: 54
64039927 TTTCATCCTA
* * * * *
64039937 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * * * * * ** *
64039991 TAATGGTATTTCT-ATAATTTTTAGAAAGTCAAAGGTATTTATGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAAC
* * * * *
64040047 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCGCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * * *
64040100 CTAGTTGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
*
64040155 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
64040176 GTAAATCGAG
Statistics
Matches: 142, Mismatches: 37, Indels: 12
0.74 0.19 0.06
Matches are distributed among these distances:
53 2 0.01
54 87 0.61
55 20 0.14
56 33 0.23
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
Found at i:64040189 original size:54 final size:54
Alignment explanation
Indices: 64039937--64040216 Score: 190
Period size: 54 Copynumber: 5.1 Consensus size: 54
64039927 TTTCATCCTA
* * * * * * **
64039937 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * * * *
64039991 TAATGGTATTTCTA-TAATTTTTAGAAAGTCAAAGGTATTTAT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-TCGAGGGTATTT-TGGTAATTTTGTAAAC
* * * * * *
64040047 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCGCAAA-
1 CAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * *
64040100 CTAGTTGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTGTAAAC
** *** * *
64040155 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAAC
*
64040209 CGAGGGTA
1 CAAGGGTA
64040217 AAACGGTATT
Statistics
Matches: 174, Mismatches: 42, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
53 3 0.02
54 116 0.67
55 21 0.12
56 34 0.20
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:64040332 original size:81 final size:81
Alignment explanation
Indices: 64040140--64040335 Score: 275
Period size: 81 Copynumber: 2.4 Consensus size: 81
64040130 GGGGTATTTT
* * * * * * * *
64040140 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
64040205 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * **
64040221 GGTATTTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
64040286 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
*
64040302 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATT
64040336 TTACAAATTG
Statistics
Matches: 98, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (81 bp):
GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:64040335 original size:27 final size:27
Alignment explanation
Indices: 64040168--64040324 Score: 251
Period size: 27 Copynumber: 5.8 Consensus size: 27
64040158 GGGTATTTTA
*
64040168 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
64040195 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
64040222 GTATTTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
64040249 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
64040276 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
64040303 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
64040325 CTTTGGTAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:64040343 original size:27 final size:27
Alignment explanation
Indices: 64040033--64040337 Score: 197
Period size: 27 Copynumber: 11.3 Consensus size: 27
64040023 AGGTATTTAT
*
64040033 GTAATTTTGTAAATC-AGGGGTATTTTG
1 GTAATTTTGTAAATCGA-GGGTAATTTG
** *
64040060 GTAATTTTACAAATTGAGGGT-ATTTCG
1 GTAATTTTGTAAATCGAGGGTAATTT-G
* * * * *
64040087 GTAATTTCGCAAA-CTAGTTGTATTTTG
1 GTAATTTTGTAAATCGAG-GGTAATTTG
** * *
64040114 GTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTGTAAATCGA-GGGTAATTTG
* * * *
64040141 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTGTAAATCGAGGGTAATTTG
**
64040168 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* ***
64040195 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* **
64040222 GT-ATTTCTGTAAATTGAGGGTAAAATG
1 GTAATTT-TGTAAATCGAGGGTAATTTG
* * ***
64040249 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* ***
64040276 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* *
64040303 GTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAATTTG
64040330 GTAATTTT
1 GTAATTTT
64040338 ACAAATTGAG
Statistics
Matches: 232, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.03
27 214 0.92
28 10 0.04
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAATTTG
Found at i:64045119 original size:2 final size:2
Alignment explanation
Indices: 64045114--64045144 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
64045104 ACACACACAC
64045114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
64045145 AATGATGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64047160 original size:24 final size:24
Alignment explanation
Indices: 64047130--64047175 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
64047120 ATGTATCGGC
64047130 AAATGCCAAAATACTGAAAAGCCA
1 AAATGCCAAAATACTGAAAAGCCA
* *
64047154 AAATGCCGAAATGCTGAAAAGC
1 AAATGCCAAAATACTGAAAAGC
64047176 TGAAAGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.17, T:0.13
Consensus pattern (24 bp):
AAATGCCAAAATACTGAAAAGCCA
Found at i:64047446 original size:29 final size:28
Alignment explanation
Indices: 64047391--64047505 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
64047381 GTGAGCTTGA
* * *
64047391 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
64047419 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
64047448 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
64047477 ATATGAATATGATTGGGCTTAGTGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
64047505 A
1 A
64047506 GATACAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:64047476 original size:58 final size:57
Alignment explanation
Indices: 64047404--64047514 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
64047394 TGAATGTGAC
* * *
64047404 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * * *
64047462 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAGTGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
64047515 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:64050431 original size:30 final size:30
Alignment explanation
Indices: 64050336--64050432 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
64050326 AGCTCACTCC
** * *
64050336 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAGCT
* * * **
64050366 TAACTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAG-CT
* *
64050396 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAGCT
64050426 TAGCTCA
1 TAGCTCA
64050433 TTTTAGTTTA
Statistics
Matches: 48, Mismatches: 17, Indels: 4
0.70 0.25 0.06
Matches are distributed among these distances:
29 2 0.04
30 43 0.90
31 3 0.06
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAAGCT
Found at i:64052127 original size:29 final size:29
Alignment explanation
Indices: 64052092--64052255 Score: 274
Period size: 29 Copynumber: 5.7 Consensus size: 29
64052082 ATAAACGATC
*** *
64052092 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
64052121 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
64052150 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
64052179 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
64052208 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
64052237 TCGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
64052256 CCTTCCAAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:64052271 original size:87 final size:87
Alignment explanation
Indices: 64052093--64052282 Score: 265
Period size: 87 Copynumber: 2.2 Consensus size: 87
64052083 TAAACGATCT
* * *
64052093 CGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
* **
64052158 TTAGTGCCATATAATTTAAGTT
66 TTAGTGCCATATAATTCAAGCC
* * *
64052180 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
**
64052245 TTAGTGCCATA-CCTTCCAAGCC
66 TTAGTGCCATATAATT-CAAGCC
64052267 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64052283 ATCTTGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
86 2 0.02
87 89 0.98
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (87 bp):
CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
TTAGTGCCATATAATTCAAGCC
Found at i:64060177 original size:29 final size:29
Alignment explanation
Indices: 64060141--64060238 Score: 133
Period size: 29 Copynumber: 3.4 Consensus size: 29
64060131 AATAAACGAT
***
64060141 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
64060170 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
64060199 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
64060228 TTCGCACACTT
1 CTCGCACACTT
64060239 GTTCGCACAC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:64060259 original size:41 final size:41
Alignment explanation
Indices: 64060202--64060279 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
64060192 ATTTAAGTTT
64060202 GCACACTTAGTGCCATATAATTTAAGTTCGCACACTTGTTC
1 GCACACTTAGTGCCATATAATTTAAGTTCGCACACTTGTTC
64060243 GCACACTTAGTGCCATATAATTTAAGTTCGCACACTT
1 GCACACTTAGTGCCATATAATTTAAGTTCGCACACTT
64060280 AGTGCCATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33
Consensus pattern (41 bp):
GCACACTTAGTGCCATATAATTTAAGTTCGCACACTTGTTC
Found at i:64060281 original size:29 final size:29
Alignment explanation
Indices: 64060239--64060317 Score: 158
Period size: 29 Copynumber: 2.7 Consensus size: 29
64060229 TCGCACACTT
64060239 GTTCGCACACTTAGTGCCATATAATTTAA
1 GTTCGCACACTTAGTGCCATATAATTTAA
64060268 GTTCGCACACTTAGTGCCATATAATTTAA
1 GTTCGCACACTTAGTGCCATATAATTTAA
64060297 GTTCGCACACTTAGTGCCATA
1 GTTCGCACACTTAGTGCCATA
64060318 CCTTCCAAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (29 bp):
GTTCGCACACTTAGTGCCATATAATTTAA
Found at i:64060284 original size:70 final size:70
Alignment explanation
Indices: 64060171--64060308 Score: 258
Period size: 70 Copynumber: 2.0 Consensus size: 70
64060161 CGATTTAAGC
*
64060171 TCGCACACATAGTGCCATATAATTTAAGTTTGCACACTTAGTGCCATATAATTTAAGTTCGCACA
1 TCGCACACATAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACA
64060236 CTTGT
66 CTTGT
*
64060241 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACA
1 TCGCACACATAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACA
64060306 CTT
66 CTT
64060309 AGTGCCATAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (70 bp):
TCGCACACATAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACA
CTTGT
Found at i:64060333 original size:99 final size:99
Alignment explanation
Indices: 64060142--64060337 Score: 277
Period size: 99 Copynumber: 2.0 Consensus size: 99
64060132 ATAAACGATC
* * *
64060142 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
* **
64060207 CTTAGTGCCATATAATTTAAGTTCGCACACTTGT
66 CTTAGTGCCATATAATTCAAGCCCGCACACTTGT
* * *
64060241 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
**
64060306 CTTAGTGCCATA-CCTTCCAAGCCCGCACACTT
66 CTTAGTGCCATATAATT-CAAGCCCGCACACTT
64060338 AGTGCCAATC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
98 2 0.02
99 83 0.98
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (99 bp):
TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
CTTAGTGCCATATAATTCAAGCCCGCACACTTGT
Found at i:64062163 original size:13 final size:13
Alignment explanation
Indices: 64062145--64062169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64062135 GTATTGATCA
64062145 TGTGTTCACACCT
1 TGTGTTCACACCT
64062158 TGTGTTCACACC
1 TGTGTTCACACC
64062170 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:64064761 original size:27 final size:26
Alignment explanation
Indices: 64064713--64064827 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 26
64064703 GCAAATCAAC
*
64064713 CATTTTA-CCTTACAAGGGTATTACAGT
1 CATTTTACCCTT-C-AGGGTATTTCAGT
*
64064740 CATTTTACCCTTCAGGGATATTTTAGT
1 CATTTTACCCTTCAGGG-TATTTCAGT
* **
64064767 CATTCTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCT-TCAGGGTATTTCAGT
* * * *
64064794 CATCTTACCCTATGAGGGTGTTTCGGT
1 CATTTTACCCT-TCAGGGTATTTCAGT
*
64064821 AATTTTA
1 CATTTTA
64064828 TCACATAAGG
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.06
27 60 0.83
28 8 0.11
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (26 bp):
CATTTTACCCTTCAGGGTATTTCAGT
Found at i:64064852 original size:27 final size:27
Alignment explanation
Indices: 64064822--64065135 Score: 443
Period size: 27 Copynumber: 11.7 Consensus size: 27
64064812 TGTTTCGGTA
*
64064822 ATTTTATCACATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
64064849 ATTTTATCACATAAGGGCAAAATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
* * *
64064876 ATTTTATCACATGAGGGCAAAATCGTT
1 ATTTTATCACATAAGGGTAAAATCGTC
* *
64064903 ATTTTATCACATAAGAGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
** * *
64064930 ATTTTATCACATAAGCATAGAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
* *
64064957 ATTTTATCACATAAGGGCAACATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
64064984 ATTTTATCACAT-AGGGTAAAATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
64065010 ATTTTATCACATAAGGGTAAAATCGCC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
64065037 ATTTTATCACATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
64065064 ATTTTATCACATAAGGGCAAAAGT-GTC
1 ATTTTATCACATAAGGGTAAAA-TCGTC
*
64065091 ATTTTATCACATAAGGGTAAAATTGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
64065118 ATTTTTTCACATAAGGGT
1 ATTTTATCACATAAGGGT
64065136 TCAGGTACGC
Statistics
Matches: 257, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 25 0.10
27 231 0.90
28 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
ATTTTATCACATAAGGGTAAAATCGTC
Found at i:64075711 original size:40 final size:40
Alignment explanation
Indices: 64075636--64075849 Score: 197
Period size: 40 Copynumber: 5.4 Consensus size: 40
64075626 ATGATATCTT
* * * *
64075636 GGCTAAG-TCCCGGAGGCTTTTATGCTAGTGACTATATCCG
1 GGCTAAGAT-CCGAAGGCATTTGTGCGAGTGACTATATCCG
*
64075676 GACTAAGATCCGAAGGCATTTGTGCGAGTTG-CTATATCCG
1 GGCTAAGATCCGAAGGCATTTGTGCGAG-TGACTATATCCG
* * * *
64075716 GGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCG
1 GGCTAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCG
* * *
64075756 GGCTAAG-TCCCGAAGGCATTTATGCTAAGTGACCATATCCG
1 GGCTAAGAT-CCGAAGGCATTTGTGC-GAGTGACTATATCCG
* * **
64075797 GGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-
1 GGCTAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCG
64075835 GGCTAA-ATCCCGAAG
1 GGCTAAGAT-CCGAAG
64075850 ATACTTGGGT
Statistics
Matches: 143, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 11 0.08
40 90 0.63
41 29 0.20
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGATCCGAAGGCATTTGTGCGAGTGACTATATCCG
Found at i:64075762 original size:80 final size:81
Alignment explanation
Indices: 64075636--64075849 Score: 251
Period size: 80 Copynumber: 2.7 Consensus size: 81
64075626 ATGATATCTT
* * * * * *
64075636 GGCTAAGTCCCGGAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTG
1 GGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCATTTATG
* *
64075700 C-GAGTTG-CTATATCCG
65 CTAAG-TGACCATATCCG
*
64075716 GGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGCATTTATG
1 GGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCATTTATG
64075780 CTAAGTGACCATATCCG
65 CTAAGTGACCATATCCG
* * *
64075797 GGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 GGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
64075850 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
79 15 0.13
80 74 0.64
81 27 0.23
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCATTTATGC
TAAGTGACCATATCCG
Found at i:64075809 original size:41 final size:40
Alignment explanation
Indices: 64075636--64075813 Score: 223
Period size: 40 Copynumber: 4.4 Consensus size: 40
64075626 ATGATATCTT
* * *
64075636 GGCTAAGTCCCGGAGGCTTTTATGCTAGTGACTATATCCG
1 GGCTAAGACCCGAAGGCATTTATGCTAGTGACTATATCCG
* * * *
64075676 GACTAAGATCCGAAGGCATTTGTGCGAGTTG-CTATATCCG
1 GGCTAAGACCCGAAGGCATTTATGCTAG-TGACTATATCCG
* * *
64075716 GGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTATGCTAGTGACTATATCCG
* *
64075756 GGCTAAGTCCCGAAGGCATTTATGCTAAGTGACCATATCCG
1 GGCTAAGACCCGAAGGCATTTATGCT-AGTGACTATATCCG
64075797 GGCTAAGACCCGAAGGC
1 GGCTAAGACCCGAAGGC
64075814 CTTGTGCGAG
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 87 0.74
41 29 0.25
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTATGCTAGTGACTATATCCG
Found at i:64082643 original size:19 final size:17
Alignment explanation
Indices: 64082610--64082652 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
64082600 CACATGGTTA
64082610 GACACACGGGCGTGTGT
1 GACACACGGGCGTGTGT
64082627 GACACACGGGCGTGTGT
1 GACACACGGGCGTGTGT
64082644 GACACACGG
1 GACACACGG
64082653 TTCCCTCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.21, C:0.26, G:0.40, T:0.14
Consensus pattern (17 bp):
GACACACGGGCGTGTGT
Found at i:64084168 original size:18 final size:18
Alignment explanation
Indices: 64084124--64084174 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
64084114 GTAGCAATGG
*
64084124 CAGTAATCAGTGCAGTAA
1 CAGTAATCAATGCAGTAA
* * *
64084142 CCGTGATCAATGCTGTAA
1 CAGTAATCAATGCAGTAA
*
64084160 CAGTAATCAGTGCAG
1 CAGTAATCAATGCAG
64084175 AATTCAAATA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (18 bp):
CAGTAATCAATGCAGTAA
Found at i:64084558 original size:27 final size:27
Alignment explanation
Indices: 64084528--64084643 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
64084518 GGCAAATCAA
* * *
64084528 TCATTTTACCTTACAAGGGTATTACAG
1 TCATTTTACCCTACGAGGGTATTTCAG
* *
64084555 TCATTTTACCCTTC-AGGGATATTTTAG
1 TCATTTTACCCTACGAGGG-TATTTCAG
* *
64084582 TCATTCTACCCTACGGGGGTATTTCAG
1 TCATTTTACCCTACGAGGGTATTTCAG
* *
64084609 TCATCTTACCCTATGAGGGTATTTCAG
1 TCATTTTACCCTACGAGGGTATTTCAG
*
64084636 TAATTTTA
1 TCATTTTA
64084644 TCACATAAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 4 0.05
27 66 0.90
28 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTACGAGGGTATTTCAG
Found at i:64084654 original size:27 final size:27
Alignment explanation
Indices: 64084632--64085032 Score: 382
Period size: 27 Copynumber: 14.9 Consensus size: 27
64084622 TGAGGGTATT
*
64084632 TCAGTAATTTTATCACATAAGGGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
**
64084660 TCA-TCATTTTATCACATAATGGAAAAA
1 TCAGTCATTTTATCACATAA-GGGTAAA
**
64084687 TC-GTCATTTTATCACATAATGGAAAAA
1 TCAGTCATTTTATCACATAA-GGGTAAA
* *
64084714 TC-GTCATTTTATCACATGAGGGCAAAA
1 TCAGTCATTTTATCACATAAGGG-TAAA
* *
64084741 TC-GTTATTTTATCACATAAGAGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
*
64084768 TCA-TCATTTTATCACATAAGTGTAGAA
1 TCAGTCATTTTATCACATAAGGGTA-AA
*
64084795 TCA-TCATTTTATCACATAAGGGCAACA
1 TCAGTCATTTTATCACATAAGGGTAA-A
64084822 TC-GTCATTTTATCACAT-AGGGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
64084848 TC-GTCATTTTATCACATAAGGGTAAA
1 TCAGTCATTTTATCACATAAGGGTAAA
* * *
64084874 ACCGCCATTTTATCACATAAGGGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
64084902 TCA-TCATTTTATCACATAAGGGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
*
64084929 T-TGTCATTTTATCACATAA-GGTCAAAA
1 TCAGTCATTTTATCACATAAGGGT--AAA
* * *
64084956 GC-GTCATTTTAGCACATAAGGGCAAAA
1 TCAGTCATTTTATCACATAAGGG-TAAA
* *
64084983 GC-GTCATTTTGTCACATAAGGGTAAAA
1 TCAGTCATTTTATCACATAAGGGT-AAA
*
64085010 T-TGTCATTTTATCACATAAGGGT
1 TCAGTCATTTTATCACATAAGGGT
64085033 TCAGGTACGC
Statistics
Matches: 326, Mismatches: 28, Indels: 39
0.83 0.07 0.10
Matches are distributed among these distances:
26 33 0.10
27 282 0.87
28 11 0.03
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
TCAGTCATTTTATCACATAAGGGTAAA
Found at i:64084693 original size:81 final size:81
Alignment explanation
Indices: 64084632--64085032 Score: 506
Period size: 81 Copynumber: 5.0 Consensus size: 81
64084622 TGAGGGTATT
* * * *
64084632 TCAGTAATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAATGGAAAAATCGTCATTTT
1 TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
**
64084697 ATCACATAATGGAAAAA
66 ATCACATAA-GGGTAAA
* * * * *
64084714 TC-GTCATTTTATCACATGAGGGCAAAATCGTTATTTTATCACATAAGAGTAAAATCATCATTTT
1 TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
*
64084778 ATCACATAAGTGTAGAA
66 ATCACATAAGGGTA-AA
* *
64084795 TCA-TCATTTTATCACATAAGGGCAACATCGTCATTTTATCACAT-AGGGTAAAATCGTCATTTT
1 TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
64084858 ATCACATAAGGGTAAA
66 ATCACATAAGGGTAAA
* * * * *
64084874 ACCGCCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGTAAAATTGTCATTTT
1 TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
64084939 ATCACATAA-GGTCAAAA
66 ATCACATAAGGGT--AAA
* * * * * *
64084956 GC-GTCATTTTAGCACATAAGGGCAAAAGCGTCATTTTGTCACATAAGGGTAAAATTGTCATTTT
1 TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
64085020 ATCACATAAGGGT
66 ATCACATAAGGGT
64085033 TCAGGTACGC
Statistics
Matches: 280, Mismatches: 32, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.01
80 72 0.26
81 196 0.70
82 9 0.03
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (81 bp):
TCAGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTT
ATCACATAAGGGTAAA
Found at i:64084697 original size:54 final size:54
Alignment explanation
Indices: 64084638--64085032 Score: 542
Period size: 54 Copynumber: 7.3 Consensus size: 54
64084628 TATTTCAGTA
* * *
64084638 ATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAATGGAAAAATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * * * *
64084692 ATTTTATCACATAATGGAAAAATCGTCATTTTATCACATGAGGGCAAAATCGTT
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * * * *
64084746 ATTTTATCACATAAGAGTAAAATCATCATTTTATCACATAAGTGTAGAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* *
64084800 ATTTTATCACATAAGGGCAACATCGTCATTTTATCACAT-AGGGTAAAATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* * *
64084853 ATTTTATCACATAAGGGTAAAACCGCCATTTTATCACATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
* *
64084907 ATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATAA-GGTCAAAAGCGTC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGT-AAAATCGTC
* * * * *
64084961 ATTTTAGCACATAAGGGCAAAAGCGTCATTTTGTCACATAAGGGTAAAATTGTC
1 ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
64085015 ATTTTATCACATAAGGGT
1 ATTTTATCACATAAGGGT
64085033 TCAGGTACGC
Statistics
Matches: 295, Mismatches: 43, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 49 0.17
54 243 0.82
55 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (54 bp):
ATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTC
Found at i:64094756 original size:47 final size:47
Alignment explanation
Indices: 64094693--64095179 Score: 814
Period size: 47 Copynumber: 10.4 Consensus size: 47
64094683 CCCTTCGGGA
* *
64094693 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
64094740 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
64094787 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
64094834 CTTATCACATATATACACTTT-ACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
64094880 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64094927 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
64094974 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
64095021 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64095068 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
64095115 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
64095162 CTTATCACATATACACAC
1 CTTATCACATATATACAC
64095180 CTTGTACATC
Statistics
Matches: 414, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 43 0.10
47 371 0.90
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:64103058 original size:40 final size:40
Alignment explanation
Indices: 64102950--64103159 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64102940 CGGGATTTAA
* * * * *
64102950 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64102990 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64103030 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64103070 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64103110 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64103150 CCGGATATAT
1 CCGGATATAT
64103160 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64111063 original size:40 final size:40
Alignment explanation
Indices: 64110990--64111172 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
64110980 CCGCACCAAG
* * * * *
64110990 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
64111029 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
64111069 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
64111109 GCCTTCGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-T
* *
64111149 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
64111173 CATTCAATTT
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 13 0.11
40 99 0.84
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:64113716 original size:80 final size:81
Alignment explanation
Indices: 64113632--64113797 Score: 235
Period size: 80 Copynumber: 2.1 Consensus size: 81
64113622 CGGCACATAG
* * * *
64113632 CCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAACCTGGATTTAGTAAC-TCGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
*
64113696 TGCCTTCGGGACTTAA
66 AGCCTTCGGGACTTAA
* * * *
64113712 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
*
64113777 AGCCTTCGGGACTTAG
66 AGCCTTCGGGACTTAA
64113793 CCCGG
1 CCCGG
64113798 ACATCATTCG
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 48 0.64
81 27 0.36
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
AGCCTTCGGGACTTAA
Found at i:64113786 original size:41 final size:40
Alignment explanation
Indices: 64113632--64113798 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
64113622 CGGCACATAG
* *
64113632 CCCGG-TTATAGTAATTCGCACAATTGCCTTCGGGAATTAA
1 CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAATTAA
* *
64113672 CCTGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * *
64113712 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * * * *
64113752 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAATTAA
64113793 CCCGGA
1 CCCGGA
64113799 CATCATTCGA
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
40 80 0.74
41 28 0.26
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
Found at i:64121077 original size:40 final size:39
Alignment explanation
Indices: 64121033--64121188 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 39
64121023 TGGGACATAG
* * * *
64121033 CCCGGTTATAGTAATTTGTACAATTGCCTTCGGGAATTAA
1 CCCGGTT-TAGTAACTCGCACAAATGCCTTCGGGAATTAA
*
64121073 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGG-TTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* *
64121113 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA
1 CCCGG-TTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * *
64121153 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGA
1 CCCGG-TTTAGTAAC-TCGCACAAATGCCTTCGGGA
64121189 CTAAGCCCGG
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 80 0.80
41 20 0.20
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (39 bp):
CCCGGTTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
Found at i:64121117 original size:80 final size:80
Alignment explanation
Indices: 64121024--64121198 Score: 217
Period size: 80 Copynumber: 2.2 Consensus size: 80
64121014 GATTGTCTTT
* * * * *
64121024 GGGACATAGCCCGGTTATAGTAATTTGTACAATTGCCTTCGGGAATTAACCCGGATTTAGTAAC-
1 GGGAC-TAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACT
* *
64121088 TCGCACAAATGCCTTC
65 TAGCACAAAAGCCTTC
* * * *
64121104 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACT
1 GGGAC-TAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACT
64121169 TAGCACAAAAGCCTTC
65 TAGCACAAAAGCCTTC
64121185 GGGACTAAGCCCGG
1 GGGACTAA-CCCGG
64121199 ACATCATTCG
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 57 0.70
81 24 0.30
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
GGGACTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTT
AGCACAAAAGCCTTC
Found at i:64121187 original size:41 final size:40
Alignment explanation
Indices: 64121052--64121188 Score: 193
Period size: 40 Copynumber: 3.4 Consensus size: 40
64121042 AGTAATTTGT
*
64121052 ACAATTGCCTTCGGGAATTAACCCGGATTTAGTAACTCGC
1 ACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGC
* * *
64121092 ACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGC
1 ACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGC
* * *
64121132 ACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGC
1 ACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-TCGC
*
64121173 ACAAAAGCCTTCGGGA
1 ACAAATGCCTTCGGGA
64121189 CTAAGCCCGG
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 67 0.79
41 18 0.21
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
ACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGC
Found at i:64126283 original size:46 final size:45
Alignment explanation
Indices: 64126211--64126421 Score: 205
Period size: 46 Copynumber: 4.6 Consensus size: 45
64126201 AGATTTGTGT
* * * *
64126211 GCCAGTGTAAGACCATGTATGAGACATGGCAT-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TGAGATGAGA
* * *
64126258 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATGAG-ATGAGA
* *
64126304 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-GAGATGAGA
* * * *
64126350 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ATGAGATGAGA
*
64126394 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
64126422 GTCAGCACGG
Statistics
Matches: 138, Mismatches: 20, Indels: 15
0.80 0.12 0.09
Matches are distributed among these distances:
44 26 0.19
45 8 0.06
46 88 0.64
47 16 0.12
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATGAGATGAGA
Found at i:64126369 original size:92 final size:89
Alignment explanation
Indices: 64126211--64126421 Score: 235
Period size: 92 Copynumber: 2.3 Consensus size: 89
64126201 AGATTTGTGT
* * * * *
64126211 GCCAGTGTAAGACCATGTATGAGACATGGCATGGCATTGAGACGAGGGCTAGTGTAAGACATGTC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATGGCATCGAGACGAGAGCCAGTGTAAGACATGTC
64126276 TGGGACATGCATCAGCCAC-AGTATGAGA
64 TGGGACATGCATCAGCCACGAG-AT--GA
* * * *
64126304 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCAT-GGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
64126369 GGGACATGCGTCGGCTACGAGATGT
65 GGGACATGCATCAGCCACGAGATGA
*
64126394 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
64126422 GTCAGCACGG
Statistics
Matches: 102, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
90 28 0.27
91 4 0.04
92 56 0.55
93 14 0.14
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (89 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATGGCATCGAGACGAGAGCCAGTGTAAGACATGTCTG
GGACATGCATCAGCCACGAGATGA
Found at i:64126458 original size:46 final size:43
Alignment explanation
Indices: 64126261--64126464 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 43
64126251 GACGAGGGCT
* * * *
64126261 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GTG-C
* * *
64126307 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-C
* * *
64126353 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
64126396 TAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGTG-C
*
64126443 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
64126465 CGGCATCGAC
Statistics
Matches: 138, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
43 3 0.02
44 32 0.23
45 3 0.02
46 97 0.70
47 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
Found at i:64126464 original size:90 final size:91
Alignment explanation
Indices: 64126261--64126427 Score: 221
Period size: 90 Copynumber: 1.8 Consensus size: 91
64126251 GACGAGGGCT
64126261 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTAT-AGAGCCAGTGTAAGACATGTCTGGG
* *
64126326 ACATGCATCGGCCTCGAGATGATAGCC
65 ACATGCATCAGCCTCGACATGATAGCC
* * * * * *
64126353 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAG-AT-GTGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATAGAGCCAGTGTAAGACATGTCTGGG
*
64126416 ACATGCGTCAGC
65 ACATGCATCAGC
64126428 ACGGTTACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
90 32 0.48
92 32 0.48
93 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATAGAGCCAGTGTAAGACATGTCTGGGA
CATGCATCAGCCTCGACATGATAGCC
Found at i:64134663 original size:40 final size:40
Alignment explanation
Indices: 64134603--64134786 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
64134593 TATTCGAATG
* *
64134603 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
64134643 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
64134683 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
64134723 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
64134763 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64134787 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:64134736 original size:80 final size:80
Alignment explanation
Indices: 64134603--64134822 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
64134593 TATTCGAATG
* * * * *
64134603 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
64134667 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
64134683 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
64134747 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
64134763 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
64134823 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 89 0.72
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:64136624 original size:16 final size:16
Alignment explanation
Indices: 64136603--64136636 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
64136593 ACGGGGCAAT
64136603 AGCAAAAATCTTACTA
1 AGCAAAAATCTTACTA
64136619 AGCAAAAATCTTACTA
1 AGCAAAAATCTTACTA
64136635 AG
1 AG
64136637 ATCAACTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.24
Consensus pattern (16 bp):
AGCAAAAATCTTACTA
Found at i:64141870 original size:11 final size:11
Alignment explanation
Indices: 64141854--64141878 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64141844 GATCCATGAA
64141854 ATGGTGAGTTC
1 ATGGTGAGTTC
64141865 ATGGTGAGTTC
1 ATGGTGAGTTC
64141876 ATG
1 ATG
64141879 ATTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.08, G:0.36, T:0.36
Consensus pattern (11 bp):
ATGGTGAGTTC
Found at i:64160781 original size:58 final size:58
Alignment explanation
Indices: 64160691--64160804 Score: 228
Period size: 58 Copynumber: 2.0 Consensus size: 58
64160681 TTTTGAAGAA
64160691 TAGGTAGGGTTTAATTAAGTGATGAAGGTTAAATTTTTAAGTTTGGCTAAATTGGGAG
1 TAGGTAGGGTTTAATTAAGTGATGAAGGTTAAATTTTTAAGTTTGGCTAAATTGGGAG
64160749 TAGGTAGGGTTTAATTAAGTGATGAAGGTTAAATTTTTAAGTTTGGCTAAATTGGG
1 TAGGTAGGGTTTAATTAAGTGATGAAGGTTAAATTTTTAAGTTTGGCTAAATTGGG
64160805 CATTCGGCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.39
Consensus pattern (58 bp):
TAGGTAGGGTTTAATTAAGTGATGAAGGTTAAATTTTTAAGTTTGGCTAAATTGGGAG
Found at i:64161837 original size:39 final size:39
Alignment explanation
Indices: 64161757--64161973 Score: 330
Period size: 39 Copynumber: 5.6 Consensus size: 39
64161747 AGGATTTTAA
* * * *
64161757 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
* *
64161795 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
64161834 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
64161873 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
64161912 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
64161951 CCGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
64161974 TGGGTTGGAA
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
38 20 0.12
39 145 0.87
40 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:64163676 original size:21 final size:21
Alignment explanation
Indices: 64163652--64163702 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
64163642 CTGTATGTGG
64163652 ATGACATACTTATCATAGGAA
1 ATGACATACTTATCATAGGAA
*
64163673 ATGACATACTTATCATGGGAA
1 ATGACATACTTATCATAGGAA
64163694 ATGACATAC
1 ATGACATAC
64163703 CTACCTTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (21 bp):
ATGACATACTTATCATAGGAA
Found at i:64165974 original size:40 final size:40
Alignment explanation
Indices: 64165905--64166030 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
64165895 AACCCAAGTA
* * * *
64165905 CCTTCGGGATTTA-TCCGAATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64165944 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64165984 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64166024 CCTTCGG
1 CCTTCGG
64166031 ATCTTAGTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 12 0.15
40 68 0.85
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64171377 original size:24 final size:23
Alignment explanation
Indices: 64171345--64171501 Score: 206
Period size: 24 Copynumber: 6.6 Consensus size: 23
64171335 ACCAAACGTT
* **
64171345 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
64171369 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
64171393 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
64171417 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
64171441 GCACACATAGTGCTTTAGTAAATC
1 GCACACATAGTGC-TTAGTAAATC
*
64171465 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
64171489 GCACACATAGTGC
1 GCACACATAGTGC
64171502 ATTTGAGATT
Statistics
Matches: 120, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
23 3 0.03
24 110 0.92
25 7 0.06
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:64171419 original size:48 final size:47
Alignment explanation
Indices: 64171345--64171501 Score: 260
Period size: 48 Copynumber: 3.3 Consensus size: 47
64171335 ACCAAACGTT
* **
64171345 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
64171393 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
64171441 GCACACATAGTGCTTTAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGC-TTAGTAAATCGCACACATAGTGCCATAGTAAATC
64171489 GCACACATAGTGC
1 GCACACATAGTGC
64171502 ATTTGAGATT
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
48 99 0.95
49 5 0.05
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:64171462 original size:72 final size:72
Alignment explanation
Indices: 64171367--64171501 Score: 243
Period size: 72 Copynumber: 1.9 Consensus size: 72
64171357 CTTATTATGT
*
64171367 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
64171432 TAGTAAA
66 TAGTAAA
**
64171439 TCGCACACATAGTGCTTTAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
64171502 ATTTGAGATT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAA
Found at i:64177116 original size:40 final size:40
Alignment explanation
Indices: 64177017--64177141 Score: 200
Period size: 40 Copynumber: 3.2 Consensus size: 40
64177007 AACCCAAGTA
* *
64177017 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64177056 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64177095 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64177135 CCTTCGG
1 CCTTCGG
64177142 ATCTTAGTCG
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 7 0.09
39 34 0.43
40 39 0.49
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64182417 original size:114 final size:113
Alignment explanation
Indices: 64182245--64182472 Score: 384
Period size: 114 Copynumber: 2.0 Consensus size: 113
64182235 CCAAACAGGG
* * * **
64182245 TCTTACTCGCACATATATATCAGAATCAATATTGATGCCAACATTTTAAACGTGGTCTTACTCGT
1 TCTTACTCGCACACATATATCAGAATCAATATCGATGCCAACATATTAAACGCAGTCTTACTCGT
64182310 ACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGCGGTC
66 ACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGCGGTC
*
64182358 TCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACATATTAAACGCAGTCTTACTCG
1 TCTTACTCGCACACATATATCAGAATCA-ATATCGATGCCAACATATTAAACGCAGTCTTACTCG
*
64182423 TACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTC
65 TACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGCGGTC
64182472 T
1 T
64182473 TACTCATGAT
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
113 26 0.24
114 81 0.76
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (113 bp):
TCTTACTCGCACACATATATCAGAATCAATATCGATGCCAACATATTAAACGCAGTCTTACTCGT
ACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGCGGTC
Found at i:64182502 original size:56 final size:56
Alignment explanation
Indices: 64182243--64182477 Score: 364
Period size: 56 Copynumber: 4.2 Consensus size: 56
64182233 TCCCAAACAG
* * * * * *
64182243 GGTCTTACTCGCACATATATATCAGAATCA-ATATTGATGCCAACATTTTAAACGT
1 GGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
64182298 GGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
1 GGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
*
64182354 GGTCTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACATATTAAACGC
1 GG--TCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
* *
64182412 AGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
64182468 GGTCTTACTC
1 GGTCTTACTC
64182478 ATGATCACAA
Statistics
Matches: 166, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
55 28 0.17
56 84 0.51
58 54 0.33
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGC
Found at i:64186119 original size:32 final size:33
Alignment explanation
Indices: 64186073--64186136 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
64186063 AACAGCGGGT
64186073 ACTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
64186105 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
64186137 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:64188839 original size:15 final size:15
Alignment explanation
Indices: 64188802--64188830 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64188792 CTTTCCTATC
64188802 TAATAATAATAATTA
1 TAATAATAATAATTA
64188817 TAATAATAATAATT
1 TAATAATAATAATT
64188831 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:64188962 original size:19 final size:18
Alignment explanation
Indices: 64188925--64188968 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
64188915 ATACATACAG
64188925 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
64188942 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
64188961 TACTAATT
1 TAATAATT
64188969 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:64192191 original size:56 final size:55
Alignment explanation
Indices: 64192131--64192305 Score: 253
Period size: 56 Copynumber: 3.2 Consensus size: 55
64192121 TCCCAAACAG
* * * *
64192131 GGTCTTACTCGCACATATATATCAGAATCACATATCGATGGCAACATTTTAAACGT
1 GGTCTTACTCGTACA-ATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
64192187 GGTCTTACTCGTAC-ACATATCAGAATCACATATCGATGCCAACGTATTAAACGC
1 GGTCTTACTCGTACAATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
64192241 GATCTTACTCGTACACATATATCAGAATCACATATCGATGTCAACGTATTAAACGT
1 GGTCTTACTCGTACA-ATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
64192297 GGTCTTACT
1 GGTCTTACT
64192306 TATGATCACA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 48 0.45
56 58 0.55
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (55 bp):
GGTCTTACTCGTACAATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:64196858 original size:39 final size:39
Alignment explanation
Indices: 64196815--64196964 Score: 169
Period size: 39 Copynumber: 3.8 Consensus size: 39
64196805 TTATAGTGAT
*
64196815 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTATAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTATAAC
* * * * *
64196854 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTATAAC
*
64196893 TCGCACAAATGCCTT-GGGAATT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTA-TAAC
* * *
64196932 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTAGCCCGGAT
64196965 ACCATTCGAA
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
38 14 0.15
39 50 0.55
40 13 0.14
41 13 0.14
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTATAAC
Found at i:64196883 original size:79 final size:79
Alignment explanation
Indices: 64196800--64196962 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
64196790 TCGGGACATG
* * * * *
64196800 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTA-TAAC-TCGCACGA
1 CCCGGTT-TAGTAACTCGCACAAATGCCTT-GGGAATTGA-CCCGGATTTAGTAACTTAGCACAA
*
64196862 ATGCCTTCGGGACTTAA
63 AAGCCTTCGGGACTTAA
* *
64196879 CCCGGTTTTGTAACTCGCACAAATGCCTTGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAG
1 CCCGGTTTAGTAACTCGCACAAATGCCTTGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAG
*
64196944 CCTTCGGGACTTAG
66 CCTTCGGGACTTAA
64196958 CCCGG
1 CCCGG
64196963 ATACCATTCG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
77 17 0.24
78 22 0.31
79 33 0.46
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CCCGGTTTAGTAACTCGCACAAATGCCTTGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAG
CCTTCGGGACTTAA
Found at i:64197671 original size:2 final size:2
Alignment explanation
Indices: 64197664--64197689 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64197654 ATGTGCAAAC
64197664 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64197690 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64204926 original size:80 final size:81
Alignment explanation
Indices: 64204829--64205007 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 81
64204819 GCTCGATTGT
* * *
64204829 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTA
1 CTTCGGGAC-TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTA
* * *
64204892 GTAAC-TCGCACGAATGC
64 GTAACTTAGCACAAAAGC
* * *
64204909 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
64204974 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
64204990 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
64205008 ATACCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.02
80 56 0.66
81 27 0.32
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:64205007 original size:41 final size:40
Alignment explanation
Indices: 64204829--64205009 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
64204819 GCTCGATTGT
* * *
64204829 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
64204869 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
64204909 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
64204949 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
64204990 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
64205010 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 86 0.73
41 29 0.25
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:64205714 original size:2 final size:2
Alignment explanation
Indices: 64205707--64205733 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64205697 ATGTGCAAAC
64205707 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64205734 CTAGAGCCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64209603 original size:28 final size:28
Alignment explanation
Indices: 64209563--64209619 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
64209553 ATTGAGTGCA
64209563 TGTGATAGGGAAACTATTTCATGCTTGT
1 TGTGATAGGGAAACTATTTCATGCTTGT
64209591 TGTGATAGGGAAACTATTTCATGCTTGT
1 TGTGATAGGGAAACTATTTCATGCTTGT
64209619 T
1 T
64209620 AGAATTATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.40
Consensus pattern (28 bp):
TGTGATAGGGAAACTATTTCATGCTTGT
Found at i:64211923 original size:29 final size:29
Alignment explanation
Indices: 64211891--64211968 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
64211881 ATACCCTCCG
** *
64211891 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
64211920 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
64211949 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
64211969 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:64219734 original size:29 final size:29
Alignment explanation
Indices: 64219702--64219779 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
64219692 ATACCCTCCG
** *
64219702 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
64219731 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
64219760 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
64219780 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Done.