Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 228 of 444
Found at i:64221157 original size:16 final size:16
Alignment explanation
Indices: 64221134--64221170 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
64221124 CAAATTAATG
64221134 CATG-AAACTTTCACA
1 CATGCAAACTTTCACA
64221149 CATGCAAACTTTCACA
1 CATGCAAACTTTCACA
64221165 CATGCA
1 CATGCA
64221171 TTTACTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.24
Consensus pattern (16 bp):
CATGCAAACTTTCACA
Found at i:64222628 original size:4 final size:4
Alignment explanation
Indices: 64222621--64222667 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
64222611 AATATCAAAA
*
64222621 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AGAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
64222668 AACATTAGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:64222985 original size:11 final size:11
Alignment explanation
Indices: 64222956--64222985 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64222946 TTGATTAATG
*
64222956 AAATATAATAA
1 AAATATATTAA
64222967 AAATATATTAA
1 AAATATATTAA
64222978 AAATATAT
1 AAATATAT
64222986 ATTGAGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATATATTAA
Found at i:64225700 original size:22 final size:22
Alignment explanation
Indices: 64225675--64225716 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
64225665 CTGAATTTAA
64225675 AATTTATCACACAT-ATTAATCC
1 AATTTATCA-ACATCATTAATCC
*
64225697 AATTTATTAACATCATTAAT
1 AATTTATCAACATCATTAAT
64225717 TTTTTAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTTATCAACATCATTAATCC
Found at i:64236057 original size:68 final size:65
Alignment explanation
Indices: 64235985--64236133 Score: 174
Period size: 64 Copynumber: 2.2 Consensus size: 65
64235975 CATCATGTGT
* * * *
64235985 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCAT
64236049 GTAG
62 GTAG
** * *
64236053 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGGTG-AGACACCATGTA
64236118 G
65 G
64236119 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
64236134 GATAAATTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 27 0.39
65 3 0.04
66 27 0.39
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCATGTAG
Found at i:64236090 original size:64 final size:64
Alignment explanation
Indices: 64235941--64236191 Score: 209
Period size: 68 Copynumber: 3.8 Consensus size: 64
64235931 TACAGATAGT
* ** * * * * *
64235941 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
64236005 TATG
62 TA-A
* * * *
64236009 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
64236073 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--TACACCATGTAGACAAGAGAGCTACGAGATA
64236138 A
64 A
* * * * **
64236139 AT-TGGCTTGGTCACATGGGTGGTACTAAGTGTTCACCATGTTTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGC
64236192 CGAACTATAT
Statistics
Matches: 149, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
63 18 0.12
64 27 0.18
65 24 0.16
66 33 0.22
68 46 0.31
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64238061 original size:37 final size:37
Alignment explanation
Indices: 64237966--64238063 Score: 169
Period size: 37 Copynumber: 2.6 Consensus size: 37
64237956 TAGTCCCGCG
* *
64237966 CGTAGTTATCGGGTCTTACCCAGACAAAATCTCCACA
1 CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
*
64238003 CGTAGTCATCGGGTCTTACCCGGACATAATCTCCACA
1 CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
64238040 CGTAGTCATCGGGTCTTACCCGGA
1 CGTAGTCATCGGGTCTTACCCGGA
64238064 ATATATTTCC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
Found at i:64238262 original size:48 final size:48
Alignment explanation
Indices: 64238204--64238676 Score: 847
Period size: 48 Copynumber: 9.9 Consensus size: 48
64238194 ATATACACAC
*
64238204 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64238252 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64238300 ATCTCATTCATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64238348 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64238396 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64238444 ATCTCATTCATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64238492 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64238540 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
64238588 ATCTCATTCATATTTTATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64238636 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
64238677 CACATATATA
Statistics
Matches: 408, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 408 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:64241052 original size:2 final size:2
Alignment explanation
Indices: 64241045--64241071 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64241035 TCATGACATG
64241045 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
64241072 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64255759 original size:33 final size:33
Alignment explanation
Indices: 64255722--64255824 Score: 206
Period size: 33 Copynumber: 3.1 Consensus size: 33
64255712 GAAAGGTAAG
64255722 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
1 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
64255755 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
1 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
64255788 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
1 TATAACAAATCAAAGAGTGTTGGTAAGAATATA
64255821 TATA
1 TATA
64255825 TGTGTAAGGT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.28
Consensus pattern (33 bp):
TATAACAAATCAAAGAGTGTTGGTAAGAATATA
Found at i:64267096 original size:27 final size:28
Alignment explanation
Indices: 64267039--64267108 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64267029 AAATTTGTAC
**
64267039 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
64267067 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
64267094 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64267109 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:64267117 original size:27 final size:27
Alignment explanation
Indices: 64267039--64267120 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
64267029 AAATTTGTAC
* *
64267039 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
64267067 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
64267094 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
64267121 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:64275017 original size:27 final size:28
Alignment explanation
Indices: 64274960--64275029 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64274950 AAATTTGTAC
**
64274960 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
64274988 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
64275015 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64275030 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:64275038 original size:27 final size:27
Alignment explanation
Indices: 64274960--64275041 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
64274950 AAATTTGTAC
* *
64274960 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
64274988 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
64275015 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
64275042 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:64283311 original size:23 final size:25
Alignment explanation
Indices: 64283249--64283312 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
64283239 CTCAACCCAT
*
64283249 ATAA-CAGGAAGCTCACAAAGAGCC
1 ATAATCAGGAAGCTTACAAAGAGCC
*
64283273 ATTAATCGGGAAGCTTACAAAGAGCC
1 A-TAATCAGGAAGCTTACAAAGAGCC
64283299 -T-ATCAGGAAGCTTA
1 ATAATCAGGAAGCTTA
64283313 TCCGGGCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 12 0.34
24 2 0.06
25 3 0.09
26 18 0.51
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (25 bp):
ATAATCAGGAAGCTTACAAAGAGCC
Found at i:64284651 original size:23 final size:23
Alignment explanation
Indices: 64284573--64284663 Score: 96
Period size: 24 Copynumber: 3.7 Consensus size: 23
64284563 GGACTCACCA
64284573 CAGCTCGTATGAGCTTA-TCGATATAT
1 CAGCTCGTA-GAGCTTACT-G-TAT-T
*
64284599 CAGCTCGTAAGAGCTTACTGTTTT
1 CAGCTCGT-AGAGCTTACTGTATT
64284623 CAGCTCGTAGGAGCTTACTG-ATT
1 CAGCTCGTA-GAGCTTACTGTATT
64284646 CAGCTCGTCAGAGCTTAC
1 CAGCTCGT-AGAGCTTAC
64284664 CATTTTAGCT
Statistics
Matches: 59, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
23 19 0.32
24 20 0.34
25 2 0.03
26 16 0.27
27 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (23 bp):
CAGCTCGTAGAGCTTACTGTATT
Found at i:64284705 original size:24 final size:23
Alignment explanation
Indices: 64284600--64284706 Score: 85
Period size: 23 Copynumber: 4.6 Consensus size: 23
64284590 TCGATATATC
*
64284600 AGCTCGTAAGAGCTTACTGTTTT
1 AGCTCGTAAGAGCTTACTATTTT
* *
64284623 CAGCTCGTAGGAGCTTACTGA-TTC
1 -AGCTCGTAAGAGCTTACT-ATTTT
* *
64284647 AGCTCGTCAGAGCTTACCATTTT
1 AGCTCGTAAGAGCTTACTATTTT
*
64284670 AGCT--TAATAGAGCTTACTATTCAT
1 AGCTCGT-A-AGAGCTTACTATT-TT
*
64284694 AGCTCGAAAGAGC
1 AGCTCGTAAGAGC
64284707 AGAAATGATA
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
21 1 0.02
22 1 0.02
23 33 0.51
24 29 0.45
25 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (23 bp):
AGCTCGTAAGAGCTTACTATTTT
Found at i:64287866 original size:22 final size:22
Alignment explanation
Indices: 64287841--64287884 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
64287831 CCAAGTTCCC
* *
64287841 ATGGAGACTTGGGTTGAGTTAA
1 ATGGAAACTTGGGTTAAGTTAA
*
64287863 ATGGAAACTTTGGTTAAGTTAA
1 ATGGAAACTTGGGTTAAGTTAA
64287885 GAAGAAGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.34
Consensus pattern (22 bp):
ATGGAAACTTGGGTTAAGTTAA
Found at i:64288885 original size:32 final size:32
Alignment explanation
Indices: 64288842--64288920 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
64288832 AACTCTGGAT
*
64288842 AGGAAAGCCTTTGTGACAAGCACTAGATATAA
1 AGGATAGCCTTTGTGACAAGCACTAGATATAA
* * * *
64288874 AGGATAGCCTTTGTGGCGAGTACTGGATATAA
1 AGGATAGCCTTTGTGACAAGCACTAGATATAA
* *
64288906 AGAATAGGCTTTGTG
1 AGGATAGCCTTTGTG
64288921 GCACAATTCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27
Consensus pattern (32 bp):
AGGATAGCCTTTGTGACAAGCACTAGATATAA
Found at i:64288997 original size:58 final size:59
Alignment explanation
Indices: 64288879--64289008 Score: 156
Period size: 58 Copynumber: 2.2 Consensus size: 59
64288869 TATAAAGGAT
* **
64288879 AGCCTTTGTGGCGAGTACTGGATATAAAGAATAGGCTTTGTGGCACAATTCAGGACAAGAA
1 AGCCTTAGTGGCGAGTACAAGATAT--AGAATAGGCTTTGTGGCACAATTCAGGACAAGAA
* * * *
64288940 AGCCTTGGTGGCGAGTACAAGATAT-GAATAGTCTTTGTGGCACAACTT-TGGATAAGAA
1 AGCCTTAGTGGCGAGTACAAGATATAGAATAGGCTTTGTGGCACAA-TTCAGGACAAGAA
64288998 AGCCTTAGTGG
1 AGCCTTAGTGG
64289009 TAGGTACTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
58 37 0.61
59 2 0.03
61 22 0.36
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (59 bp):
AGCCTTAGTGGCGAGTACAAGATATAGAATAGGCTTTGTGGCACAATTCAGGACAAGAA
Found at i:64289130 original size:29 final size:29
Alignment explanation
Indices: 64289088--64289158 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
64289078 GTTTAAGAAC
64289088 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
1 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
64289117 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
1 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
*
64289146 GCCTTTATGGCAA
1 GCCTTTGTGGCAA
64289159 TCTCTGTCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (29 bp):
GCCTTTGTGGCAAATCTTTGAAAGGAAAT
Found at i:64289178 original size:29 final size:29
Alignment explanation
Indices: 64289088--64289178 Score: 114
Period size: 29 Copynumber: 3.1 Consensus size: 29
64289078 GTTTAAGAAC
* *
64289088 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
1 GCCTTTATGGCAAATCTTTCAAAGGAAAT
* *
64289117 GCCTTTGTGGCAAATCTTTGAAAGGAAAT
1 GCCTTTATGGCAAATCTTTCAAAGGAAAT
64289146 GCCTTTATGGC-AATCTCTGTCAAAGGAAA-
1 GCCTTTATGGCAAATCT-T-TCAAAGGAAAT
64289175 GCCT
1 GCCT
64289179 CAGTGGCTAC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
28 5 0.09
29 44 0.76
30 9 0.16
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (29 bp):
GCCTTTATGGCAAATCTTTCAAAGGAAAT
Found at i:64293756 original size:170 final size:170
Alignment explanation
Indices: 64293468--64293809 Score: 657
Period size: 170 Copynumber: 2.0 Consensus size: 170
64293458 TACCTATTAT
* *
64293468 ATGATTAAATGGTAAGCCATGTTTTATGTTATACGAACTTACTAAGCTCATATACTTACTCTGTG
1 ATGATGAAATGGTAAGCCATATTTTATGTTATACGAACTTACTAAGCTCATATACTTACTCTGTG
*
64293533 TTATTTTCCATATCTTCTAGTGCATCAGAACTTTGTTCGAGTTGGAAGCTTGTCAAAGCTATATC
66 TTATTTTCCATATCTTATAGTGCATCAGAACTTTGTTCGAGTTGGAAGCTTGTCAAAGCTATATC
64293598 ACACTATCCATCAGCTCTTTTAGTACTTTTGGTTGTTTTG
131 ACACTATCCATCAGCTCTTTTAGTACTTTTGGTTGTTTTG
64293638 ATGATGAAATGGTAAGCCATATTTTATGTTATACGAACTTACTAAGCTCATATACTTACTCTGTG
1 ATGATGAAATGGTAAGCCATATTTTATGTTATACGAACTTACTAAGCTCATATACTTACTCTGTG
64293703 TTATTTTCCATATCTTATAGTGCATCAGAACTTTGTTCGAGTTGGAAGCTTGTCAAAGCTATATC
66 TTATTTTCCATATCTTATAGTGCATCAGAACTTTGTTCGAGTTGGAAGCTTGTCAAAGCTATATC
64293768 ACACTATCCATCAGCTCTTTTAGTACTTTTGGTTGTTTTG
131 ACACTATCCATCAGCTCTTTTAGTACTTTTGGTTGTTTTG
64293808 AT
1 AT
64293810 TTTGGTTATA
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
170 169 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (170 bp):
ATGATGAAATGGTAAGCCATATTTTATGTTATACGAACTTACTAAGCTCATATACTTACTCTGTG
TTATTTTCCATATCTTATAGTGCATCAGAACTTTGTTCGAGTTGGAAGCTTGTCAAAGCTATATC
ACACTATCCATCAGCTCTTTTAGTACTTTTGGTTGTTTTG
Found at i:64296046 original size:60 final size:60
Alignment explanation
Indices: 64295949--64296068 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
64295939 GGCATTATAG
* *
64295949 AGGGATTATATGCTTATGTATTCTGGAGGAGATCTCACTCCTATTGGTTATATCGATTCT
1 AGGGATTATATGCTTATGTATTCTGGAAGAGACCTCACTCCTATTGGTTATATCGATTCT
*
64296009 AGGGATTATATGTTTATGTATTCTGGAAGAGACCTCACTCCTATTGGTTATATCGATTCT
1 AGGGATTATATGCTTATGTATTCTGGAAGAGACCTCACTCCTATTGGTTATATCGATTCT
64296069 TACTTCCAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (60 bp):
AGGGATTATATGCTTATGTATTCTGGAAGAGACCTCACTCCTATTGGTTATATCGATTCT
Found at i:64298855 original size:41 final size:41
Alignment explanation
Indices: 64298798--64298883 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
64298788 GAGTTTAGGA
64298798 AAATCCATTGTAACACCCTATACCAACCTAGACACTAAGCC
1 AAATCCATTGTAACACCCTATACCAACCTAGACACTAAGCC
*
64298839 AAATCCATTGTAACACCCTATACCAACCTGGACACTAAGCC
1 AAATCCATTGTAACACCCTATACCAACCTAGACACTAAGCC
64298880 AAAT
1 AAAT
64298884 ATCGAGATGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.40, C:0.33, G:0.08, T:0.20
Consensus pattern (41 bp):
AAATCCATTGTAACACCCTATACCAACCTAGACACTAAGCC
Found at i:64305319 original size:49 final size:49
Alignment explanation
Indices: 64305259--64305689 Score: 694
Period size: 49 Copynumber: 8.9 Consensus size: 49
64305249 GTATGAGATA
64305259 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
64305308 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
64305357 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
64305406 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
64305455 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
64305504 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
64305551 TATATATGTGATAATGCCTAATGGCCCATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * *
64305598 TATATGTGTGGTAAGGCCGAACGGCCAATGTGATGGATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
64305645 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64305690 CGCATATGTG
Statistics
Matches: 357, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
47 125 0.35
49 232 0.65
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:64315192 original size:22 final size:22
Alignment explanation
Indices: 64315160--64315202 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
64315150 ATGGAATAAG
64315160 AACACTCAATTTCGGGATTACA
1 AACACTCAATTTCGGGATTACA
* * *
64315182 AACACTTAATTTTGGGGTTAC
1 AACACTCAATTTCGGGATTAC
64315203 TTCCACCTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
AACACTCAATTTCGGGATTACA
Found at i:64320422 original size:40 final size:39
Alignment explanation
Indices: 64320377--64320584 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
64320367 CGGAATACAA
*
64320377 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64320417 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64320457 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
64320497 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
64320537 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64320577 CCGGATAT
1 CCGGATAT
64320585 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64320524 original size:80 final size:81
Alignment explanation
Indices: 64320377--64320582 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
64320367 CGGAATACAA
* * * *
64320377 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
64320441 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
64320457 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
64320520 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
64320537 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
64320583 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:64323040 original size:27 final size:27
Alignment explanation
Indices: 64323000--64323103 Score: 149
Period size: 27 Copynumber: 3.9 Consensus size: 27
64322990 GCGAGGCTGC
64323000 CAGATAT-TGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAA
*
64323026 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATATATGTGGCAGAGCCACCAGAA
* *
64323053 CAGATA-ATTGTGGCATAGCCACCAGGA
1 CAGATATA-TGTGGCAGAGCCACCAGAA
*
64323080 CAGATATATGTGGTAGAGCCACCA
1 CAGATATATGTGGCAGAGCCACCA
64323104 ATTAGATAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.12
27 60 0.87
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
CAGATATATGTGGCAGAGCCACCAGAA
Found at i:64323073 original size:54 final size:53
Alignment explanation
Indices: 64323000--64323132 Score: 196
Period size: 54 Copynumber: 2.5 Consensus size: 53
64322990 GCGAGGCTGC
*
64323000 CAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCA-AT
* *
64323053 CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGTAGAGCCACCAAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAT
* *
64323106 TAGATAAATTGTGGCATATCCACCAGA
1 CAGAT-AATTGTGGCATAGCCACCAGA
64323133 CGCTTCCTCC
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
53 11 0.15
54 61 0.85
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (53 bp):
CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAT
Found at i:64323118 original size:27 final size:28
Alignment explanation
Indices: 64323005--64323132 Score: 140
Period size: 27 Copynumber: 4.7 Consensus size: 28
64322995 GCTGCCAGAT
* *
64323005 ATTGTGGCAGAGCCACCAGAACAGATAT
1 ATTGTGGCAGAGCCACCAGATCAGATAA
64323033 A-TGTGGCAGAGCCACCAGATCAGAT-A
1 ATTGTGGCAGAGCCACCAGATCAGATAA
* *
64323059 ATTGTGGCATAGCCACCAGGA-CAGATAT
1 ATTGTGGCAGAGCCACCA-GATCAGATAA
* *
64323087 A-TGTGGTAGAGCCACCA-ATTAGATAA
1 ATTGTGGCAGAGCCACCAGATCAGATAA
* *
64323113 ATTGTGGCATATCCACCAGA
1 ATTGTGGCAGAGCCACCAGA
64323133 CGCTTCCTCC
Statistics
Matches: 83, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
25 1 0.01
26 7 0.08
27 70 0.84
28 5 0.06
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (28 bp):
ATTGTGGCAGAGCCACCAGATCAGATAA
Found at i:64324715 original size:26 final size:26
Alignment explanation
Indices: 64324679--64324785 Score: 187
Period size: 26 Copynumber: 4.1 Consensus size: 26
64324669 TGAAATGCCT
*
64324679 TCATGGAACATTTACCTAAACCATTA
1 TCATGGAACATTTACCTAACCCATTA
64324705 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
* *
64324731 TCATGGAATATTTACCTAATCCATTA
1 TCATGGAACATTTACCTAACCCATTA
64324757 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
64324783 TCA
1 TCA
64324786 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:64330972 original size:54 final size:54
Alignment explanation
Indices: 64330899--64331030 Score: 194
Period size: 54 Copynumber: 2.4 Consensus size: 54
64330889 GCGAGGCTGC
* *
64330899 CAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
* *
64330952 CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGTAGAGCCACCAAAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
* *
64331006 TAGATAAATTGTGGCATATCCACCA
1 CAGAT-AATTGTGGCATAGCCACCA
64331031 AGACGCTTCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
53 5 0.07
54 48 0.68
55 18 0.25
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (54 bp):
CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
Found at i:64331011 original size:27 final size:27
Alignment explanation
Indices: 64330899--64331002 Score: 149
Period size: 27 Copynumber: 3.9 Consensus size: 27
64330889 GCGAGGCTGC
64330899 CAGATAT-TGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAA
*
64330925 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATATATGTGGCAGAGCCACCAGAA
* *
64330952 CAGATA-ATTGTGGCATAGCCACCAGGA
1 CAGATATA-TGTGGCAGAGCCACCAGAA
*
64330979 CAGATATATGTGGTAGAGCCACCA
1 CAGATATATGTGGCAGAGCCACCA
64331003 AATTAGATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.12
27 60 0.87
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
CAGATATATGTGGCAGAGCCACCAGAA
Found at i:64332617 original size:26 final size:26
Alignment explanation
Indices: 64332586--64332693 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
64332576 TGAAATGGCC
* *
64332586 ATCATGGAACATGTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
64332612 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
64332638 ACCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64332664 ACCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64332690 ATCA
1 ATCA
64332694 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64335279 original size:41 final size:41
Alignment explanation
Indices: 64335227--64335316 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
64335217 CACAAAAATA
*
64335227 AATTCATGGGTACCGAAGTACAAACGAGGGCA-CGTATGTGC
1 AATTCAAGGGTACCGAAGTACAAA-GAGGGCAGCGTATGTGC
* *
64335268 AATTCAAGGGTACCGAAGTACAAATAGGGGAGCGTATGTGC
1 AATTCAAGGGTACCGAAGTACAAAGAGGGCAGCGTATGTGC
64335309 AATTCAAG
1 AATTCAAG
64335317 AATAATCTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 5 0.11
41 40 0.89
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (41 bp):
AATTCAAGGGTACCGAAGTACAAAGAGGGCAGCGTATGTGC
Found at i:64338999 original size:14 final size:16
Alignment explanation
Indices: 64338977--64339010 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
64338967 ATTGATCGAA
64338977 AAAAGTAC-AAAAAAT
1 AAAAGTACAAAAAAAT
64338992 AAAA-TACAAAAAAAT
1 AAAAGTACAAAAAAAT
64339007 AAAA
1 AAAA
64339011 AATATTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAGTACAAAAAAAT
Found at i:64344790 original size:45 final size:45
Alignment explanation
Indices: 64344655--64344873 Score: 261
Period size: 45 Copynumber: 5.0 Consensus size: 45
64344645 TTTTATCAAA
* * * **
64344655 TCACCGGCATT-TAGCCTGTTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
64344697 TCACTGGCATT-TTGCCTGCTAGGCTCGAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
64344740 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAGTGGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
64344785 TCACCGGCATTATAGCCTGCTAGGCTCAAAGACTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64344830 TCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
64344874 TGTGTGGTAT
Statistics
Matches: 151, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
41 7 0.05
42 25 0.17
43 11 0.07
44 16 0.11
45 92 0.61
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:64352532 original size:44 final size:45
Alignment explanation
Indices: 64352422--64352636 Score: 235
Period size: 45 Copynumber: 4.9 Consensus size: 45
64352412 TTTTATCAAA
* * **
64352422 TCACCGGCATT-TAGCCTGCTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
64352464 TCACCGGCATT-TTGCCTACTAGGCTC-AACGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * * *
64352507 TCACTGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAGTGGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
64352552 TCACCGGCATTGTACCCTGTTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64352597 TCACCGGCATTATAGCCTGCTACGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
64352637 ATACTATGCG
Statistics
Matches: 142, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
41 9 0.06
42 24 0.17
43 10 0.07
44 13 0.09
45 86 0.61
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:64359557 original size:28 final size:27
Alignment explanation
Indices: 64359512--64359594 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 27
64359502 ATGCCATTGA
64359512 ATACTCAATATTCTGCACACTAAGTGCC
1 ATACTCAATA-TCTGCACACTAAGTGCC
*
64359540 ATACTCGATATCTAGCACACTAAGTGCC
1 ATACTCAATATCT-GCACACTAAGTGCC
** *
64359568 ATTTTCAATGTCTCGCACACTAAGTGC
1 ATACTCAATATCT-GCACACTAAGTGC
64359595 GATGCTCGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 3 0.06
28 45 0.94
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (27 bp):
ATACTCAATATCTGCACACTAAGTGCC
Found at i:64359594 original size:56 final size:56
Alignment explanation
Indices: 64359526--64359651 Score: 171
Period size: 56 Copynumber: 2.2 Consensus size: 56
64359516 TCAATATTCT
* *
64359526 GCACACTAAGTGCCATACTCGATATCTAGCACACTAAGTGCCATTTTCAATGTCTC
1 GCACACTAAGTGCCATACTCGATATCTAGCACAATAAATGCCATTTTCAATGTCTC
* * * * *
64359582 GCACACTAAGTGCGATGCTCGATGTCTTGCACAATAAATGCCATTTTTAATGTCTC
1 GCACACTAAGTGCCATACTCGATATCTAGCACAATAAATGCCATTTTCAATGTCTC
* *
64359638 ACACACTAACTGCC
1 GCACACTAAGTGCC
64359652 GTACATAGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (56 bp):
GCACACTAAGTGCCATACTCGATATCTAGCACAATAAATGCCATTTTCAATGTCTC
Found at i:64359651 original size:28 final size:28
Alignment explanation
Indices: 64359526--64359651 Score: 117
Period size: 28 Copynumber: 4.5 Consensus size: 28
64359516 TCAATATTCT
** * * *
64359526 GCACACTAAGTGCCATACTCGATATCTA
1 GCACACTAAGTGCCATTTTCAATGTCTC
64359554 GCACACTAAGTGCCATTTTCAATGTCTC
1 GCACACTAAGTGCCATTTTCAATGTCTC
* ** * *
64359582 GCACACTAAGTGCGATGCTCGATGTCTT
1 GCACACTAAGTGCCATTTTCAATGTCTC
* * *
64359610 GCACAATAAATGCCATTTTTAATGTCTC
1 GCACACTAAGTGCCATTTTCAATGTCTC
* *
64359638 ACACACTAACTGCC
1 GCACACTAAGTGCC
64359652 GTACATAGCC
Statistics
Matches: 77, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTGCCATTTTCAATGTCTC
Found at i:64362169 original size:80 final size:79
Alignment explanation
Indices: 64362035--64362226 Score: 206
Period size: 80 Copynumber: 2.4 Consensus size: 79
64362025 CGAATGGTGT
* * * *
64362035 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCGGGTCAACTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCGGGTCAACTCCCGAAGGCAATTG
* *
64362100 TGCGAGTTACCAAAA
65 TGCGAATCACCAAAA
* * * *
64362115 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAAT-CGGGTC-AACTCCCGAAGGCAATT
* *
64362179 GTGCGAATCACTATAA
64 GTGCGAATCACCAAAA
* * * *
64362195 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
64362227 CGCTATATCC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
79 10 0.11
80 83 0.89
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCGGGTCAACTCCCGAAGGCAATTGT
GCGAATCACCAAAA
Found at i:64362199 original size:40 final size:39
Alignment explanation
Indices: 64362035--64362217 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
64362025 CGAATGGTGT
** * *
64362035 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACTAAA
* * * * *
64362075 TCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAATTA-CTAAA
* * *
64362115 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAATTACTAAA
* *
64362154 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTA-AA
* *
64362195 CCGGGCTATGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
64362218 CGAGCGAGTC
Statistics
Matches: 116, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
39 8 0.07
40 102 0.88
41 6 0.05
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:64362233 original size:40 final size:40
Alignment explanation
Indices: 64362155--64362238 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64362145 GTTATTAAAT
* * *
64362155 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64362195 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64362235 CCGG
1 CCGG
64362239 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64370745 original size:40 final size:40
Alignment explanation
Indices: 64370649--64370827 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
64370639 CGAATGGTGT
* * * *
64370649 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
64370690 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
64370730 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
64370770 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
64370810 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
64370828 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:64370788 original size:80 final size:80
Alignment explanation
Indices: 64370649--64370841 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
64370639 CGAATGGTGT
* * * *
64370649 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
64370714 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
64370730 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
64370794 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
64370810 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
64370842 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:64370848 original size:40 final size:40
Alignment explanation
Indices: 64370770--64370853 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64370760 GTTATTAAAT
* * *
64370770 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64370810 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64370850 CCGG
1 CCGG
64370854 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64375753 original size:40 final size:40
Alignment explanation
Indices: 64375516--64375758 Score: 235
Period size: 40 Copynumber: 6.1 Consensus size: 40
64375506 CGGATGATAA
* * *
64375516 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTATA-T
* * *
64375556 CCGGGCTAAGTCCCAAAGGCATTCGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
64375596 CCGAGCTTAGGCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
64375636 CCGGGCTAAGTCCCAAAGGCGTTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
64375675 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* **
64375715 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
64375755 CCGG
1 CCGG
64375759 TTAAATTCCG
Statistics
Matches: 171, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.22
40 130 0.76
41 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:64375770 original size:79 final size:79
Alignment explanation
Indices: 64375556--64375772 Score: 195
Period size: 79 Copynumber: 2.7 Consensus size: 79
64375546 GTGGCTAATT
* ** * * * * **
64375556 CCGGGCTAAGTCCCAAAGGCATTCGTGCAAGCTACTATATCCGAGCTTAGGCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCAAAGGCATTTGAACGAGTTACTATA-CCGGGCTAAATCCCGAAGGCATTCG
* *
64375621 TGCGAGCTACTATAT
65 TGCAAGCTACTATAA
* ** * * *
64375636 CCGGGCTAAGTCCCAAAGGCGTTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCAAAGGCATTTGAACGAGTTACTATACCGGGCTAAATCCCGAAGGCATTCGT
*
64375701 GCAAGTTACTATAA
66 GCAAGCTACTATAA
* * * *
64375715 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCAAAGGCATTTGAACGAGTTA-CTATA-CCGGGCTAAATCCCGAAGG
64375773 TACGTGATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
78 2 0.02
79 76 0.67
80 36 0.32
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCAAAGGCATTTGAACGAGTTACTATACCGGGCTAAATCCCGAAGGCATTCGT
GCAAGCTACTATAA
Found at i:64382863 original size:2 final size:2
Alignment explanation
Indices: 64382850--64382879 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
64382840 ATGTAATGAT
*
64382850 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64382880 AATTTCATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:64383973 original size:24 final size:24
Alignment explanation
Indices: 64383946--64383994 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
64383936 TAAAATCCGC
64383946 TTGTTTGAAATTTTGGGCCTTTTT
1 TTGTTTGAAATTTTGGGCCTTTTT
64383970 TTGTTTGAAATTTTGGGCCTTTTT
1 TTGTTTGAAATTTTGGGCCTTTTT
64383994 T
1 T
64383995 AGAAAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.08, G:0.20, T:0.59
Consensus pattern (24 bp):
TTGTTTGAAATTTTGGGCCTTTTT
Found at i:64390408 original size:13 final size:13
Alignment explanation
Indices: 64390390--64390429 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
64390380 CTAGTTGCAA
*
64390390 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
*
64390403 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
64390416 TGTTTTTGAAAAG
1 TGCTTTTGAAAAG
64390429 T
1 T
64390430 TTGGTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.42
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:64418318 original size:26 final size:27
Alignment explanation
Indices: 64418268--64418319 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
64418258 TTTGATTGGT
*
64418268 TAAGATTATTTTATTATTATTTTAATA
1 TAAGATTATTTTATTATTATCTTAATA
64418295 TAAGA-TATTTTATTATT-TACTTAAT
1 TAAGATTATTTTATTATTAT-CTTAAT
64418320 GGTTAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 17 0.74
27 5 0.22
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (27 bp):
TAAGATTATTTTATTATTATCTTAATA
Found at i:64420285 original size:223 final size:223
Alignment explanation
Indices: 64419876--64420326 Score: 672
Period size: 223 Copynumber: 2.0 Consensus size: 223
64419866 CCTATAGAGT
*
64419876 TCATACGACACTTTCAGAATAATCGCAGCATTGCTGCCAATATATTGGCGAAATATTGCCTTACA
1 TCATACGACACTTTCAGAATAATCGCAGCATTGCTGCCAATATATTGGCGAAATATCGCCTTACA
64419941 TAGAATACTTACTCCTCATAAAACATAACCCGTCCCATAGCCAGATACAGACAGAACATCAGATA
66 TAGAATACTTACTCCTCATAAAACATAACCCGTCCCATAGCCAGATACAGACAGAACATCAGATA
* * * * * *
64420006 AAATAGAATAACATATACCAGAATGTATATCACATGCATGCTCGTATAACAAATACTAAACATGC
131 AAACAAAATAACAGATACCAGAACGTATATCACATGCATGCTCATATAAAAAATACTAAACATGC
*
64420071 TCATACATAACAGAATAGATCTTACATA
196 TCATACATAACAGAATAGATCATACATA
* * * * * *
64420099 -CATACGACACTTTTCAGAATAATTGCAGCATTGGTGCGAGTATATTGGTGAAATATCGGCTTAC
1 TCATACGACAC-TTTCAGAATAATCGCAGCATTGCTGCCAATATATTGGCGAAATATCGCCTTAC
* * * *
64420163 ATAGAATACTTCCTTCTCATAAAACATAACCCG-CCTTATAGCCAGATACAGACAGAGCATCAGA
65 ATAGAATACTTACTCCTCATAAAACATAACCCGTCC-CATAGCCAGATACAGACAGAACATCAGA
* *
64420227 TAAAACAAAATAACAGATACCAGAACGTATATTACATGTATGCTCATATAAAAAATACTAAACAT
129 TAAAACAAAATAACAGATACCAGAACGTATATCACATGCATGCTCATATAAAAAATACTAAACAT
* *
64420292 GCTCATACATAACATAATATATCATACATA
194 GCTCATACATAACAGAATAGATCATACATA
64420322 TCATA
1 TCATA
64420327 TTACACTATA
Statistics
Matches: 203, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
222 12 0.06
223 187 0.92
224 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (223 bp):
TCATACGACACTTTCAGAATAATCGCAGCATTGCTGCCAATATATTGGCGAAATATCGCCTTACA
TAGAATACTTACTCCTCATAAAACATAACCCGTCCCATAGCCAGATACAGACAGAACATCAGATA
AAACAAAATAACAGATACCAGAACGTATATCACATGCATGCTCATATAAAAAATACTAAACATGC
TCATACATAACAGAATAGATCATACATA
Found at i:64422122 original size:22 final size:22
Alignment explanation
Indices: 64422090--64422134 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
64422080 GATGATTGTG
64422090 GCACTTCGGTGCAAATGAAAGT
1 GCACTTCGGTGCAAATGAAAGT
* * *
64422112 GCACTTTGGTGCAAGTGATAGT
1 GCACTTCGGTGCAAATGAAAGT
64422134 G
1 G
64422135 GCTCTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (22 bp):
GCACTTCGGTGCAAATGAAAGT
Found at i:64423515 original size:55 final size:55
Alignment explanation
Indices: 64423456--64423574 Score: 132
Period size: 55 Copynumber: 2.2 Consensus size: 55
64423446 CGTGTGCAAC
* * * * *
64423456 ACTGACTT-TAGGGCATGGCCATGACGCACGCCCATGCGGCCTACCCGTGGACATT
1 ACTGACTTATA-GGCACGGCCATGACACACGCCCATACGGCCAACCCGTGGACAAT
* * * * *
64423511 ACTGACTTATATGCACGGCTATGGCACACGCCCGTATGGCCAACCCGTGGACAAT
1 ACTGACTTATAGGCACGGCCATGACACACGCCCATACGGCCAACCCGTGGACAAT
64423566 ACTGACTTA
1 ACTGACTTA
64423575 AAGTTTAAGT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 51 0.96
56 2 0.04
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (55 bp):
ACTGACTTATAGGCACGGCCATGACACACGCCCATACGGCCAACCCGTGGACAAT
Found at i:64424523 original size:47 final size:48
Alignment explanation
Indices: 64424320--64424543 Score: 167
Period size: 49 Copynumber: 4.7 Consensus size: 48
64424310 GGGCTAAGTT
** * * * *
64424320 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCTA-TCTTCATCGAG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTACGCATCATTGAG
* * * * * * *
64424369 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCT-CTCGT-GTATAAG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTACGCATCAT-TGAG
* * * * *
64424418 TGCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACGAAGC-TT-A-
1 -GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACGCATCATTGAG
*
64424463 GCCGATGCATGTCCCAGTCACGTCTTACACTGGCTAC-CATCATTGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACGCATCATTGAG
64424510 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
64424544 ACTCATCTCT
Statistics
Matches: 144, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 32 0.22
45 4 0.03
46 2 0.01
47 34 0.24
48 16 0.11
49 50 0.35
50 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACGCATCATTGAG
Found at i:64424615 original size:47 final size:47
Alignment explanation
Indices: 64424320--64424637 Score: 185
Period size: 47 Copynumber: 6.7 Consensus size: 47
64424310 GGGCTAAGTT
** * * * *
64424320 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCTTCATCGAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCGTAAT-GTG
* * *
64424369 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGT-
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATC--GTA-ATGTG
* *
64424419 GCTGATGCATGTCCCAGACAT-GTCTTACACTAGC-A-CG-AA-GCTTA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCGTAATG--TG
* * * * * * *
64424463 GCCGATGCATGTCCCAGTCA-CGTCTTACACTGGCTACCATCATTGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCGT-AATGTG
* * *
64424510 GCCGATGCATGTCCCAGACA-CGTCTTACACTGGCACTCATC-TCTAT-T-
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAG--CT-ATCGT-AATGTG
* *
64424557 -CCGATTCCATGTCCCAGACATGGTCTTACACTAGTTATCGTAATGTG
1 GCCGA-TGCATGTCCCAGACATGGTCTTACACTAGCTATCGTAATGTG
* **
64424604 GCTGATGCATGTCCTGGACAT-GTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC
64424638 CCTCGTCTCA
Statistics
Matches: 214, Mismatches: 34, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 2 0.01
44 31 0.14
45 6 0.03
46 21 0.10
47 59 0.28
48 28 0.13
49 54 0.25
50 8 0.04
51 2 0.01
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCGTAATGTG
Found at i:64424629 original size:94 final size:94
Alignment explanation
Indices: 64424369--64424682 Score: 314
Period size: 94 Copynumber: 3.4 Consensus size: 94
64424359 CTTCATCGAG
* *
64424369 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGT-GCTGATGCATGTCC
1 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTATC--GTA-ATGTGGCTGATGCATGTCC
** *
64424433 CAGACATGTCTTACACTAGCACGAAGCT-TA-
63 CAGACATGTCTTACACTAGCACTCATCTCTAT
* * * * * * * * *
64424463 GCCGATG-CATGTCCCAGTCA-CGTCTTACACTGGCTACCATCATTGAGGCCGATGCATGTCCCA
1 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTATCGT-AATGTGGCTGATGCATGTCCCA
* *
64424526 GACACGTCTTACACTGGCACTCATCTCTAT
65 GACATGTCTTACACTAGCACTCATCTCTAT
* * * * **
64424556 TCCGATTCCATGTCCCAGACATGGTCTTACACTAGTTATCGTAATGTGGCTGATGCATGTCCTGG
1 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTATCGTAATGTGGCTGATGCATGTCCCAG
* * *
64424621 ACATGTCTTACACTAGCCCTCGTCTCAAT
66 ACATGTCTTACACTAGCACTCATCTCTAT
* *
64424650 GCCGATGCCATATCCTAGATATGGTCTTACACT
1 GCCGATGCCATATCCCAGACATGGTCTTACACT
64424683 GGCTCTCACA
Statistics
Matches: 175, Mismatches: 39, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
90 2 0.01
91 37 0.21
92 16 0.09
93 16 0.09
94 89 0.51
95 15 0.09
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTATCGTAATGTGGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACTCATCTCTAT
Found at i:64424629 original size:141 final size:140
Alignment explanation
Indices: 64424320--64424682 Score: 326
Period size: 141 Copynumber: 2.6 Consensus size: 140
64424310 GGGCTAAGTT
* * *
64424320 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATATCCC
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTACCATCATCGAGGCCGATGCCATATCCC
* * * * * *
64424385 AGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGTCCCAGACATGTCTTACACT
64 AGACATCGTCTTACACTAGCACTCATCTATAAGTGCCGATCCATGTCCCAGACATGTCTTACACT
64424450 AGCACGAAGCTTA
129 AGCACGAAGC-TA
* * * * *
64424463 GCCGATGCATGTCCCAGTCACGTCTTACACTGGCTACCATCATTGAGGCCGATG-CATGTCCCAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTACCATCATCGAGGCCGATGCCATATCCCAG
* * *
64424527 ACA-CGTCTTACACTGGCACTCATCTCT-A-TTCCGATTCCATGTCCCAGACATGGTCTTACACT
66 ACATCGTCTTACACTAGCACTCATCTATAAGTGCCGA-TCCATGTCCCAGACAT-GTCTTACACT
* *
64424589 AGTTATCGTAATG-TG
129 AG-CA-CG-AA-GCTA
* * * * * * * *
64424604 GCTGATGCATGTCCTGGACATGTCTTACACTAGC-CCTCGTC-TCAATGCCGATGCCATATCCTA
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTAC-CATCATCGAGGCCGATGCCATATCCCA
* *
64424667 GATATGGTCTTACACT
65 GACATCGTCTTACACT
64424683 GGCTCTCACA
Statistics
Matches: 177, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
137 4 0.02
138 16 0.09
139 30 0.17
140 23 0.13
141 74 0.42
142 22 0.12
143 8 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (140 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTACCATCATCGAGGCCGATGCCATATCCCAG
ACATCGTCTTACACTAGCACTCATCTATAAGTGCCGATCCATGTCCCAGACATGTCTTACACTAG
CACGAAGCTA
Found at i:64428942 original size:48 final size:46
Alignment explanation
Indices: 64428814--64429042 Score: 167
Period size: 47 Copynumber: 4.9 Consensus size: 46
64428804 ACGAAGTTTA
* * * * *
64428814 GCCGATGCATGTCCTAGTCACGTCTTACACTGGCTACCTTCAT-T-GAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCT--C-TCATCTCTAC
* * *
64428861 GCCGATGCATGTCCCAGACAAGTCTTACATTGGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTCTAC
* * * ** *
64428907 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTGTCGT-AATATG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTCTA-C
* * * * * * * *
64428955 GCTGATGCATGTCCTAGACACGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTCTAC
64429001 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTCTCAT
64429043 AAAACCCAAT
Statistics
Matches: 143, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
44 4 0.03
45 2 0.01
46 29 0.20
47 70 0.49
48 38 0.27
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTCTAC
Found at i:64428963 original size:94 final size:94
Alignment explanation
Indices: 64428864--64429037 Score: 267
Period size: 94 Copynumber: 1.9 Consensus size: 94
64428854 CATTGAGGCC
* * *
64428864 GATGCATGTCCCAGACAAGTCTTACATTGGCACTCATCTCTACGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACAAGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACAT
*
64428929 GGTCTTACATTGGCTGTCGTAATATGGCT
66 GGTCTTACACTGGCTGTCGTAATATGGCT
* * * * *
64428958 GATGCATGTCCTAGACACGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACAAGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACAT
64429023 GGTCTTACACTGGCT
66 GGTCTTACACTGGCT
64429038 CTCATAAAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACAAGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTGTCGTAATATGGCT
Found at i:64432491 original size:18 final size:19
Alignment explanation
Indices: 64432464--64432502 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
64432454 TTTATAATAA
64432464 TTCAACATTTC-CA-CTAT
1 TTCAACATTTCTCATCTAT
64432481 TTCACACATTTCTCATCTAT
1 TTCA-ACATTTCTCATCTAT
64432501 TT
1 TT
64432503 TACAACTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 7 0.37
19 2 0.11
20 6 0.32
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (19 bp):
TTCAACATTTCTCATCTAT
Found at i:64438469 original size:25 final size:25
Alignment explanation
Indices: 64438435--64438497 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
64438425 AATCAAAATG
* *
64438435 AGAATTAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAC
*
64438460 AGAATCAGAATCAGTATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
64438485 AGAATCAGAATCA
1 AGAATCAGAATCA
64438498 TAATGTGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:64438673 original size:27 final size:26
Alignment explanation
Indices: 64438637--64438698 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
64438627 GATATTGTAA
* *
64438637 CAAAGTCACCAAATACAGATATTGTGG
1 CAAAGCCACCAAA-ACAGATAATGTGG
* *
64438664 CAGAGCCACCAGAACAGATAATGTGG
1 CAAAGCCACCAAAACAGATAATGTGG
64438690 CAAAGCCAC
1 CAAAGCCAC
64438699 TTAACAGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (26 bp):
CAAAGCCACCAAAACAGATAATGTGG
Found at i:64439371 original size:12 final size:13
Alignment explanation
Indices: 64439343--64439375 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
64439333 TTATTTCTTT
64439343 TTCTCCATCTACC
1 TTCTCCATCTACC
*
64439356 TTCTCC-TCTTCC
1 TTCTCCATCTACC
64439368 TTCTCCAT
1 TTCTCCAT
64439376 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:64440470 original size:28 final size:28
Alignment explanation
Indices: 64440438--64440502 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
64440428 ATTTACTAGA
*
64440438 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
64440466 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
64440494 ATACCCCTA
1 ATACCCCTA
64440503 GAGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:64440666 original size:27 final size:28
Alignment explanation
Indices: 64440608--64440697 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 28
64440598 AGGAAGCGTC
* * *
64440608 CTGGTGGCTA-TGCCATAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
**
64440636 CTGGTGGC-CTTGCCAC-GTATATCTGTT
1 CTGGTGGCAC-TGCCACAAAATATCTGTT
64440663 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
64440692 CTGGTG
1 CTGGTG
64440698 ACTTTGTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
27 21 0.42
28 22 0.44
29 7 0.14
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:64441185 original size:19 final size:19
Alignment explanation
Indices: 64441161--64441199 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
64441151 TTTTAATTAT
* *
64441161 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
64441180 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
64441199 T
1 T
64441200 ATGATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:64441777 original size:22 final size:22
Alignment explanation
Indices: 64441749--64441814 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
64441739 GCAAATACGT
*
64441749 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * *
64441771 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
64441793 TTGGCACAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
64441815 AGGCTTTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:64442786 original size:27 final size:27
Alignment explanation
Indices: 64442241--64442779 Score: 666
Period size: 27 Copynumber: 20.0 Consensus size: 27
64442231 GGGGCAGAAT
* * *
64442241 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442268 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442295 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442322 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442349 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442376 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
64442403 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442430 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442457 TGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
64442484 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442511 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442538 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442565 GGTATTTCTACCC-ATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442591 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
64442618 GGTAATTCTACCGTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*** ** *
64442645 AACAATTCTATTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
64442672 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442699 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442726 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
64442753 AGTAATTCTACCCTACAAGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
64442780 AATAATTTTG
Statistics
Matches: 443, Mismatches: 68, Indels: 2
0.86 0.13 0.00
Matches are distributed among these distances:
26 23 0.05
27 420 0.95
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:64442855 original size:27 final size:25
Alignment explanation
Indices: 64442819--64443056 Score: 190
Period size: 27 Copynumber: 9.0 Consensus size: 25
64442809 TAATTCTGTA
*
64442819 AATCGGGGGTACTTTGATAATTTTAC
1 AATCGAGGGTA-TTTGATAATTTTAC
*
64442845 AAGTCGAGGGTATTTTAGTAATTTTAC
1 AA-TCGAGGGTATTTGA-TAATTTTAC
* *
64442872 AATCGACGGTATTTCGATAATTTTAT
1 AATCGAGGGTATTT-GATAATTTTAC
* * *
64442898 AAACTG-GGGGACTTTGGTAATTTTAC
1 AATC-GAGGGTA-TTTGATAATTTTAC
*
64442924 AAGTCGAGGGTATTTCGGTAATTTTAC
1 AA-TCGAGGGTATTT-GATAATTTTAC
* *
64442951 AAATTGAGGGTATTTCAGTAATTTTAC
1 -AATCGAGGGTATTTGA-TAATTTTAC
* *
64442978 AAATTGAGGGTATTTCAGTAATTTTAC
1 -AATCGAGGGTATTTGA-TAATTTTAC
* *
64443005 AATCGACGGTATTTTGGTAATTTTAC
1 AATCGAGGGTA-TTTGATAATTTTAC
* *
64443031 AAATCGAGGATATTTGGGTAATTTTA
1 -AATCGAGGGTATTT-GATAATTTTA
64443057 TAAACCGGAG
Statistics
Matches: 178, Mismatches: 21, Indels: 25
0.79 0.09 0.11
Matches are distributed among these distances:
26 67 0.38
27 109 0.61
28 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (25 bp):
AATCGAGGGTATTTGATAATTTTAC
Found at i:64442896 original size:53 final size:53
Alignment explanation
Indices: 64442818--64443056 Score: 252
Period size: 53 Copynumber: 4.5 Consensus size: 53
64442808 GTAATTCTGT
*
64442818 AAATCGGGGGTACTTT-GATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTA-TTTCGATAATTTTACAA-TCGAGGGTATTTTAGTAATTTTAC
* * * * * *
64442872 -AATCGACGGTATTTCGATAATTTTATAAACTG-GGGGACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTACAATC-GAGGGTATTTTAGTAATTTTAC
* * * *
64442924 AAGTCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC-AATCGAGGGTATTTTAGTAATTTTAC
* * *
64442978 AAATTGAGGGTATTTC-AGTAATTTTACAATCGACGGTATTTTGGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTACAATCGAGGGTATTTTAGTAATTTTAC
* * *
64443031 AAATCGAGGATATTTGGGTAATTTTA
1 AAATCGAGGGTATTTCGATAATTTTA
64443057 TAAACCGGAG
Statistics
Matches: 150, Mismatches: 28, Indels: 15
0.78 0.15 0.08
Matches are distributed among these distances:
52 21 0.14
53 88 0.59
54 41 0.27
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
AAATCGAGGGTATTTCGATAATTTTACAATCGAGGGTATTTTAGTAATTTTAC
Found at i:64443017 original size:80 final size:79
Alignment explanation
Indices: 64442836--64443081 Score: 309
Period size: 80 Copynumber: 3.1 Consensus size: 79
64442826 GGTACTTTGA
* *
64442836 TAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAC-AATCGACGGTATTTCGATAATTTTATAA
1 TAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCG-TAATTTTATAA
* *
64442900 ACTGGGGGACTTT-GG
65 ACTGGGGTA-TTTCAG
* * *
64442915 TAATTTTACAAGTCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAA
1 TAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTC-GTAATTTTATAA
*
64442980 ATTGAGGGTATTTCAG
65 ACTG-GGGTATTTCAG
* * *
64442996 TAATTTTACAA-TCGACGGTATTTTGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAA
1 TAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTT-CGTAATTTTATAA
*
64443060 ACCGGAGGTATTTCAG
65 ACTGG-GGTATTTCAG
64443076 TAATTT
1 TAATTT
64443082 GGTAAACTAA
Statistics
Matches: 145, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
79 35 0.24
80 93 0.64
81 17 0.12
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (79 bp):
TAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGTAATTTTATAAA
CTGGGGTATTTCAG
Found at i:64443071 original size:27 final size:26
Alignment explanation
Indices: 64442836--64443081 Score: 174
Period size: 27 Copynumber: 9.2 Consensus size: 26
64442826 GGTACTTTGA
** **
64442836 TAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTACAAACCGA-GGTATTTCGG
* *
64442863 TAATTTTAC-AATCGACGGTATTTCGA
1 TAATTTTACAAACCGA-GGTATTTCGG
* * * *
64442889 TAATTTTATAAACTGGGGGACTTT-GG
1 TAATTTTACAAACCGAGGTA-TTTCGG
**
64442915 TAATTTTACAAGTCGAGGGTATTTCGG
1 TAATTTTACAAACCGA-GGTATTTCGG
** *
64442942 TAATTTTACAAATTGAGGGTATTTCAG
1 TAATTTTACAAACCGA-GGTATTTCGG
** *
64442969 TAATTTTACAAATTGAGGGTATTTCAG
1 TAATTTTACAAACCGA-GGTATTTCGG
* *
64442996 TAATTTTAC-AATCGACGGTATTTTGG
1 TAATTTTACAAACCGA-GGTATTTCGG
* *
64443022 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAACCGAGG-TATTTCGG
* *
64443049 TAATTTTATAAACCGGAGGTATTTCAG
1 TAATTTTACAAACC-GAGGTATTTCGG
64443076 TAATTT
1 TAATTT
64443082 GGTAAACTAA
Statistics
Matches: 183, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 62 0.34
27 117 0.64
28 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
TAATTTTACAAACCGAGGTATTTCGG
Found at i:64444510 original size:55 final size:54
Alignment explanation
Indices: 64444423--64444656 Score: 202
Period size: 55 Copynumber: 4.4 Consensus size: 54
64444413 ATTAGGGTTT
64444423 AAGGATACCATGTAAGACCATG-CAA-ACGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGA--CATGGCAATTGGTAA-GTTTCTAAGGC
* * *
64444478 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG-C
* * * * * *
64444534 AAGG-TCCCATGTACGACCATGCCAAGGCATGAC-ATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
64444586 AATGATACCATGTAAGACCATGTCGAGACATGG-AAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
**
64444635 AAGGATACCACATAAGACCATG
1 AAGGATACCATGTAAGACCATG
64444657 AAAAGTCATG
Statistics
Matches: 146, Mismatches: 24, Indels: 24
0.75 0.12 0.12
Matches are distributed among these distances:
49 19 0.13
52 6 0.04
53 37 0.25
54 11 0.08
55 65 0.45
56 7 0.05
57 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:64444629 original size:108 final size:110
Alignment explanation
Indices: 64444430--64444630 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
64444420 TTTAAGGATA
*
64444430 CCATGTAAGACCATGCAAACGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCAAACGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
64444495 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGAAAAGGTC
* * * * *
64444540 CCATGTACGACCATGCCAAGGCATGAC-ATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGACCATGCAAACGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
64444602 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
64444631 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCAAACGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:64444890 original size:16 final size:16
Alignment explanation
Indices: 64444869--64444900 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64444859 ATAAATTTGA
64444869 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
64444885 TTAAGTAAGTGAGTAT
1 TTAAGTAAGTAAGTAT
64444901 GTGAAGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:64446615 original size:42 final size:43
Alignment explanation
Indices: 64446538--64446639 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
64446528 TCCCGGACGT
* ** *
64446538 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
* *
64446581 GGTCTTACATG-AAATCAGGTAT-GATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCAATGTCCCAGACAG
* *
64446623 GGTCTTATACGTAAATC
1 GGTCTTACATGTAAATC
64446640 TCAACCGAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
Found at i:64454697 original size:18 final size:18
Alignment explanation
Indices: 64454674--64454712 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
64454664 GTCATGCAAT
64454674 AGTAATCAATGCAGTAAC
1 AGTAATCAATGCAGTAAC
*
64454692 AGTAATCAGTGCAGTAAC
1 AGTAATCAATGCAGTAAC
64454710 AGT
1 AGT
64454713 TTAAACAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (18 bp):
AGTAATCAATGCAGTAAC
Found at i:64455158 original size:81 final size:80
Alignment explanation
Indices: 64455063--64455342 Score: 364
Period size: 81 Copynumber: 3.5 Consensus size: 80
64455053 GGGGTGAAAC
* * *
64455063 AATCATCTTACCATAAAAGGGCAAAACAGTCATTTTACCACATAAGGGTAAAACAATCATTTTAC
1 AATCATTTTACCATATAAGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAATCATTTTAC
*
64455128 CTCATAAGGGCAAAAT
65 CTCATAAGGGAAAAAT
* * *
64455144 AATCATTTTACCATATAAGGGCAAATCAGTCATTTTATCCTATAAGGGCAAAACAGTCATTTTAC
1 AATCATTTTACCATATAAGGGCAAAACAGTCATTTTA-CCCATAAGGGCAAAACAATCATTTTAC
64455209 CTCATAAGGGAAAAAT
65 CTCATAAGGGAAAAAT
* * * * *
64455225 AGTTATTTTACCATATAAGAGCAAAATAGTCATTTTACCCTATAAGGGCAAAACAATCATTTTAT
1 AATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCC-ATAAGGGCAAAACAATCATTTTAC
* * *
64455290 CACAGAAGGGAAAAAC
65 CTCATAAGGGAAAAAT
* *
64455306 AATCATTTTATC-TCATAAGGGCAAAATAGTCATTTTA
1 AATCATTTTACCAT-ATAAGGGCAAAACAGTCATTTTA
64455343 TTAATTTAGG
Statistics
Matches: 174, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 3 0.02
81 169 0.97
82 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (80 bp):
AATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCCATAAGGGCAAAACAATCATTTTACC
TCATAAGGGAAAAAT
Found at i:64455343 original size:27 final size:27
Alignment explanation
Indices: 64455079--64455342 Score: 293
Period size: 27 Copynumber: 9.8 Consensus size: 27
64455069 CTTACCATAA
*
64455079 AAGGGCAAAACAGTCATTTTACCACAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
64455106 AAGGGTAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
64455133 AAGGGCAAAATAATCATTTTACCAT-AT
1 AAGGGCAAAACAGTCATTTTACC-TCAT
*
64455160 AAGGGCAAATCAGTCATTTTATCCT-AT
1 AAGGGCAAAACAGTCATTTTA-CCTCAT
64455187 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* * *
64455214 AAGGGAAAAATAGTTATTTTACCAT-AT
1 AAGGGCAAAACAGTCATTTTACC-TCAT
* *
64455241 AAGAGCAAAATAGTCATTTTACC-CTAT
1 AAGGGCAAAACAGTCATTTTACCTC-AT
* * * *
64455268 AAGGGCAAAACAATCATTTTATCACAG
1 AAGGGCAAAACAGTCATTTTACCTCAT
* * *
64455295 AAGGGAAAAACAATCATTTTATCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
64455322 AAGGGCAAAATAGTCATTTTA
1 AAGGGCAAAACAGTCATTTTA
64455343 TTAATTTAGG
Statistics
Matches: 204, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
26 3 0.01
27 196 0.96
28 5 0.02
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:64459536 original size:19 final size:19
Alignment explanation
Indices: 64459512--64459556 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
64459502 TTAGGCATAT
*
64459512 GGCCCGATGACGAAGACCC
1 GGCCCGACGACGAAGACCC
64459531 GGCCCGACGACGAAGACCC
1 GGCCCGACGACGAAGACCC
*
64459550 AGCCCGA
1 GGCCCGA
64459557 GCACCTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.27, C:0.40, G:0.31, T:0.02
Consensus pattern (19 bp):
GGCCCGACGACGAAGACCC
Found at i:64461006 original size:27 final size:27
Alignment explanation
Indices: 64460979--64461135 Score: 158
Period size: 27 Copynumber: 5.8 Consensus size: 27
64460969 CGATTTGTAG
* * *
64460979 AATTACCATTTTACCTTCGGTTTATAG
1 AATTACCATTTTACCTTCGATTTACAA
* *
64461006 AATTACCGTTTCACCCTT-GATTTACAA
1 AATTACCATTTTA-CCTTCGATTTACAA
* * * * *
64461033 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCATTTTACCTTCGATTTACAA
64461060 AATTACCATTTTACCCTT-GATTTACAA
1 AATTACCATTTTA-CCTTCGATTTACAA
*
64461087 AATTACCATTTTACCCTC-ATTTTACAA
1 AATTACCATTTTACCTTCGA-TTTACAA
*
64461114 AATTACCATTTTACCCTCGATT
1 AATTACCATTTTACCTTCGATT
64461136 GTGAAATTAC
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.06
27 93 0.86
28 8 0.07
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.41
Consensus pattern (27 bp):
AATTACCATTTTACCTTCGATTTACAA
Found at i:64461028 original size:54 final size:54
Alignment explanation
Indices: 64460979--64461135 Score: 215
Period size: 54 Copynumber: 2.9 Consensus size: 54
64460969 CGATTTGTAG
* ** *
64460979 AATTACCATTTTACCTTCGGTTTATAGAATTACCGTTTCACCCTTGATTTACAA
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTCACCCTTGATTTACAA
* *
64461033 AATTACCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTTGATTTACAA
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTCACCCTTGATTTACAA
* * * * *
64461087 AATTACCATTTTACCCTCATTTTACAAAATTACCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTCACCCTTGATT
64461136 GTGAAATTAC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.41
Consensus pattern (54 bp):
AATTACCATTTTACCCTCAATTTATAGAATTACCATTTCACCCTTGATTTACAA
Found at i:64461091 original size:81 final size:81
Alignment explanation
Indices: 64460965--64461131 Score: 221
Period size: 81 Copynumber: 2.1 Consensus size: 81
64460955 TACTAAAATT
* * * * * * *
64460965 CCCTCGATTTGTAGAATTACCATTTTACCTTCGGTTTATAGAATTACCGTTTCACCCTTGA-TTT
1 CCCTCAATTTATAGAATTACCATTTTACCTTCGATTTACAAAATTACCATTTCACCC-TCATTTT
*
64461029 ACAAAATTACCGTTTTA
65 ACAAAATTACCATTTTA
*
64461046 CCCTCAATTTATAGAATTACCATTTTACCCTT-GATTTACAAAATTACCATTTTACCCTCATTTT
1 CCCTCAATTTATAGAATTACCATTTTA-CCTTCGATTTACAAAATTACCATTTCACCCTCATTTT
64461110 ACAAAATTACCATTTTA
65 ACAAAATTACCATTTTA
64461127 CCCTC
1 CCCTC
64461132 GATTGTGAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 69 0.92
82 4 0.05
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCTTCGATTTACAAAATTACCATTTCACCCTCATTTTA
CAAAATTACCATTTTA
Found at i:64461157 original size:27 final size:27
Alignment explanation
Indices: 64461127--64461296 Score: 141
Period size: 27 Copynumber: 6.3 Consensus size: 27
64461117 TACCATTTTA
* * **
64461127 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * *
64461154 CCCTATA-GGATAGAATTACCAAAATAC
1 CCCTAGATTG-TAAAATTACCAAAATAC
*
64461181 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * *
64461208 CCCTAGTTTGTAAAACTACCGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * * * *
64461235 CACTAGTTTGTGAAATTATCGAAATA-
1 CCCTAGATTGTAAAATTACCAAAATAC
64461261 CCCTCA-ATTTGTAAAATTACCAAAATAC
1 CCCT-AGA-TTGTAAAATTACCAAAATAC
64461289 CCCT-GATT
1 CCCTAGATT
64461297 TACAAAATTA
Statistics
Matches: 115, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
26 6 0.05
27 104 0.90
28 5 0.04
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:64461208 original size:54 final size:53
Alignment explanation
Indices: 64461134--64461292 Score: 192
Period size: 54 Copynumber: 2.9 Consensus size: 53
64461124 TTACCCTCGA
* ** *
64461134 TTGTGAAATTACTGAAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGT
* * * * *
64461188 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAACTACCGAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGT
* *
64461242 TTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TTGTGAAATTACCGAAATACCC-CTATTTGTAAAATTACCAAAATACCCCT
64461293 GATTTACAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 83 0.95
55 4 0.05
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
TTGTGAAATTACCGAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGT
Found at i:64461305 original size:54 final size:55
Alignment explanation
Indices: 64461167--64461318 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 55
64461157 TATAGGATAG
* * *
64461167 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
* * * *
64461221 AACTACCGAAATACCACTAGTTTGTGAAATTATCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
** *
64461275 AATTACCAAAATACCCCT-GATTTACAAAATTATAGAAATACCCT
1 AATTACCAAAATACCCCTAG-TTTGTAAAATTATCGAAATACCCT
64461319 TGACTTTTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 80 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (55 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
Found at i:64461306 original size:27 final size:27
Alignment explanation
Indices: 64461167--64461292 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
64461157 TATAGGATAG
64461167 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
64461194 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
64461221 AACTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
64461248 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
64461275 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
64461293 GATTTACAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.03
27 79 0.92
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:64461313 original size:27 final size:27
Alignment explanation
Indices: 64461247--64461378 Score: 106
Period size: 27 Copynumber: 4.7 Consensus size: 27
64461237 CTAGTTTGTG
* ** **
64461247 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTATAGAAATACCCTTGATTTACA
* *
64461274 AAATTACCA-AAATACCCCTGATTTACA
1 AAATTA-TAGAAATACCCTTGATTTACA
*
64461301 AAATTATAGAAATACCCTTGACTTTTTCTAA
1 AAATTATAGAAATACCCTTGA--TTTAC--A
* *
64461332 AAATTATAGAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTGATTTACA
64461359 AAATTACTA-AAATACCCTTG
1 AAATTA-TAGAAATACCCTTG
64461379 GTTTGTAGAT
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
26 1 0.01
27 53 0.63
28 2 0.02
29 8 0.10
31 20 0.24
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTGATTTACA
Found at i:64462347 original size:25 final size:24
Alignment explanation
Indices: 64462309--64462378 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
64462299 AGGAAGTGCT
*
64462309 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCT-TGCCCCAGTTTACCA
* *
64462334 AAAAGGGCATTGCCCCAATTTATCA
1 AAAAGGGC-TTGCCCCAGTTTACCA
*
64462359 AAAAGGGCTTTGTCCCAGTT
1 AAAAGGGC-TTGCCCCAGTT
64462379 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTGCCCCAGTTTACCA
Found at i:64462584 original size:42 final size:42
Alignment explanation
Indices: 64462525--64462612 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
64462515 TAGTCTCCCC
*
64462525 AAATGGACTTGCATACATTCATTGTTATTTCATGTGATATTG
1 AAATGGACTTGCATACATTCATTGATATTTCATGTGATATTG
* *
64462567 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGACTTGCATACATTCATTGATATTTCATGTGATATTG
64462609 AAAT
1 AAAT
64462613 AGGCCTATGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (42 bp):
AAATGGACTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:64462667 original size:32 final size:30
Alignment explanation
Indices: 64462631--64462692 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
64462621 GGGCCATACC
64462631 ATTTACAATAAAGGCTTCGGCCCAGTGATATG
1 ATTTACAA-AAAGGCTTCGGCCCAGT-ATATG
**
64462663 ATTTATGAAAAGGCTTCGGCCCAGTATATG
1 ATTTACAAAAAGGCTTCGGCCCAGTATATG
64462693 TCGAGACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 5 0.18
31 17 0.61
32 6 0.21
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (30 bp):
ATTTACAAAAAGGCTTCGGCCCAGTATATG
Found at i:64466077 original size:18 final size:19
Alignment explanation
Indices: 64466042--64466079 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
64466032 AGGATTGGCC
64466042 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGGAATGGGCT
*
64466061 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCGGAATGGGCT
64466079 A
1 A
64466080 TTGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.16, G:0.39, T:0.18
Consensus pattern (19 bp):
AAATGGGCCGGAATGGGCT
Found at i:64466192 original size:29 final size:29
Alignment explanation
Indices: 64466147--64466265 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
64466137 GTGATCATGA
*
64466147 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
64466175 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
64466204 ATAAGAATATGAATTAGGCCAAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
64466233 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
64466261 ATATG
1 ATATG
64466266 CATGTATTAG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:64466214 original size:58 final size:57
Alignment explanation
Indices: 64466151--64466263 Score: 163
Period size: 58 Copynumber: 2.0 Consensus size: 57
64466141 TCATGAATAT
* * * **
64466151 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTAGGCCAAATGGGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
*
64466209 AATATGAATTAGGCCAAATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTAGGCCAAATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
64466264 TGCATGTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 20 0.41
58 29 0.59
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (57 bp):
AATATGAATTAGGCCAAATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:64467769 original size:66 final size:68
Alignment explanation
Indices: 64467693--64467879 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64467683 TAGTACCACT
*
64467693 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64467755 CACG
65 CACG
64467759 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64467824 ATCACG
63 ATCACG
64467830 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64467880 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64467804 original size:71 final size:71
Alignment explanation
Indices: 64467716--64467879 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64467706 CGATTTGTCT
64467716 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64467781 CTTTCA
66 CTTTCA
64467787 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64467852 CTTTCA
66 CTTTCA
64467858 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64467880 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64467917 original size:71 final size:70
Alignment explanation
Indices: 64467716--64467913 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64467706 CGATTTGTCT
* * *
64467716 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64467781 CTTTCA
65 CTTTCA
* * *
64467787 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64467852 CTTTCA
65 CTTTCA
* *
64467858 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64467914 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64475332 original size:66 final size:68
Alignment explanation
Indices: 64475256--64475442 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64475246 TAGTACCACT
*
64475256 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64475318 CACG
65 CACG
64475322 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64475387 ATCACG
63 ATCACG
64475393 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64475443 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64475367 original size:71 final size:71
Alignment explanation
Indices: 64475279--64475442 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64475269 CGATTTGTCT
64475279 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64475344 CTTTCA
66 CTTTCA
64475350 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64475415 CTTTCA
66 CTTTCA
64475421 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64475443 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64475480 original size:71 final size:70
Alignment explanation
Indices: 64475279--64475476 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64475269 CGATTTGTCT
* * *
64475279 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64475344 CTTTCA
65 CTTTCA
* * *
64475350 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64475415 CTTTCA
65 CTTTCA
* *
64475421 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64475477 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64477716 original size:17 final size:18
Alignment explanation
Indices: 64477694--64477727 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64477684 GTTTACCTGT
*
64477694 GTGGGGCTCACA-GGTCG
1 GTGGGGCCCACACGGTCG
64477711 GTGGGGCCCACACGGTC
1 GTGGGGCCCACACGGTC
64477728 TATTTTTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.29, G:0.44, T:0.15
Consensus pattern (18 bp):
GTGGGGCCCACACGGTCG
Found at i:64488023 original size:48 final size:48
Alignment explanation
Indices: 64487957--64488082 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
64487947 TACAAGGTAA
* * *
64487957 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
64488005 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
** *
64488053 GGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
64488083 TTGTGCAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:64488108 original size:48 final size:47
Alignment explanation
Indices: 64487968--64488111 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 47
64487958 TATATATGTG
* * *
64487968 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
* *
64488016 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG-GGATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
64488064 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
64488112 GTGGCCGAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
48 79 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:64494251 original size:25 final size:25
Alignment explanation
Indices: 64494223--64494301 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
64494213 ACTCGGCCCT
*
64494223 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
64494248 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
64494270 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
64494295 ATCACAT
1 ATCACAT
64494302 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:64494347 original size:49 final size:49
Alignment explanation
Indices: 64494173--64494478 Score: 471
Period size: 49 Copynumber: 6.4 Consensus size: 49
64494163 CCCTTCGGGA
* * * * *
64494173 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64494220 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64494267 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64494314 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64494363 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64494412 CTTATCACATATATATAAACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64494461 CTTATCACATATATATAC
1 CTTATCACATATATATAC
64494479 TCACATATAT
Statistics
Matches: 243, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 91 0.37
49 151 0.62
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64494484 original size:14 final size:14
Alignment explanation
Indices: 64494465--64494492 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64494455 TTAGGCCTTA
64494465 TCACATATATATAC
1 TCACATATATATAC
64494479 TCACATATATATAC
1 TCACATATATATAC
64494493 ACTTTCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
TCACATATATATAC
Found at i:64494487 original size:63 final size:63
Alignment explanation
Indices: 64494416--64494541 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
64494406 TTAGGCCTTA
64494416 TCACATATATATAAACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 TCACATATATATAAACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
* * *
64494479 TCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCTCATATTTATAC
1 TCACATATATATAAACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
64494542 ACATTCACAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.37
Consensus pattern (63 bp):
TCACATATATATAAACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
Found at i:64501824 original size:27 final size:26
Alignment explanation
Indices: 64501782--64501954 Score: 134
Period size: 27 Copynumber: 6.4 Consensus size: 26
64501772 TATTTGGTTG
*
64501782 AAATACCCTCGATTTGTAAAATTATCA
1 AAATACCCT-GGTTTGTAAAATTATCA
*
64501809 AAATACCCCTGGTTTGTAAAATTATCG
1 AAATA-CCCTGGTTTGTAAAATTATCA
*
64501836 AAATACCCTCGATTTGTAAAATTA-CTA
1 AAATACCCT-GGTTTGTAAAATTATC-A
** *
64501863 AAATACCTCCAGTTTGTAAAATT-TCTG
1 AAATACC-CTGGTTTGTAAAATTATC-A
* * * *
64501890 AAATAACCTTGTAGTGTAAAATTACCA
1 AAATACCCTGGT-TTGTAAAATTATCA
* * *
64501917 AAATACCCTTGTAGTGTAAAATTATCG
1 AAATACCCTGGT-TTGTAAAATTATCA
64501944 AAATAACCCTG
1 AAAT-ACCCTG
64501955 TAGGGTAAAA
Statistics
Matches: 120, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
26 8 0.07
27 101 0.84
28 11 0.09
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATACCCTGGTTTGTAAAATTATCA
Found at i:64501866 original size:54 final size:54
Alignment explanation
Indices: 64501781--64501953 Score: 194
Period size: 54 Copynumber: 3.2 Consensus size: 54
64501771 CTATTTGGTT
*
64501781 GAAATACCCTCGATTTGTAAAATTA-TCAAAATACCCCTGGTTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACT-AAAATACCCCTAGTTTGTAAAATTATC
64501835 GAAATACCCTCGATTTGTAAAATTACTAAAATACCTCC-AGTTTGTAAAATT-TC
1 GAAATACCCTCGATTTGTAAAATTACTAAAATACC-CCTAGTTTGTAAAATTATC
* * * * * *
64501888 TGAAATAACCTTG-TAGTGTAAAATTACCAAAATA-CCCTTGTAGTGTAAAATTATC
1 -GAAATACCCTCGAT-TTGTAAAATTACTAAAATACCCCTAGT-TTGTAAAATTATC
64501943 GAAATAACCCT
1 GAAAT-ACCCT
64501954 GTAGGGTAAA
Statistics
Matches: 103, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
52 2 0.02
53 6 0.06
54 86 0.83
55 9 0.09
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (54 bp):
GAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTATC
Found at i:64502053 original size:34 final size:34
Alignment explanation
Indices: 64502014--64502116 Score: 145
Period size: 34 Copynumber: 3.0 Consensus size: 34
64502004 TATGAATTTG
64502014 ACTGATTTGACTGTGATTGTATGACTGTGCTTTA
1 ACTGATTTGACTGTGATTGTATGACTGTGCTTTA
64502048 ACTGATTTGACTGTGATTGTATGACTGTGCTTTA
1 ACTGATTTGACTGTGATTGTATGACTGTGCTTTA
* * *
64502082 ATTGACTTG-CTTGTGGTTGTATGACTAGATGCTTT
1 ACTGATTTGAC-TGTGATTGTATGACT-G-TGCTTT
64502117 TAATATATGT
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
33 1 0.02
34 55 0.87
35 1 0.02
36 6 0.10
ACGTcount: A:0.19, C:0.12, G:0.24, T:0.45
Consensus pattern (34 bp):
ACTGATTTGACTGTGATTGTATGACTGTGCTTTA
Found at i:64505259 original size:27 final size:26
Alignment explanation
Indices: 64505221--64505394 Score: 141
Period size: 27 Copynumber: 6.5 Consensus size: 26
64505211 TCCTATTTGG
64505221 CCGAAATACCCCCAGTTTGTAAAATTA
1 CCGAAATACCCCC-GTTTGTAAAATTA
*
64505248 CCGAAATACCCCCGATTTGTAAAATCA
1 CCGAAATACCCCCG-TTTGTAAAATTA
* *
64505275 TCGAAATACCCTCGATTTGTAAAATTA
1 CCGAAATACCCCCG-TTTGTAAAATTA
* ** *
64505302 CTGAAATACCTCTAGTTTGTAAAATTT
1 CCGAAATACC-CCCGTTTGTAAAATTA
* * ** *
64505329 CTGAAATAACCTTGTAGTGTAAAATTA
1 CCGAAATACCCCCGT-TTGTAAAATTA
* ** *
64505356 CCAAAATACCCTTGTAGTGTAAAATTA
1 CCGAAATACCCCCGT-TTGTAAAATTA
*
64505383 TCGAAATACCCC
1 CCGAAATACCCC
64505395 TGTAGGGTAA
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.04
27 118 0.94
28 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.30
Consensus pattern (26 bp):
CCGAAATACCCCCGTTTGTAAAATTA
Found at i:64505399 original size:54 final size:53
Alignment explanation
Indices: 64505238--64505407 Score: 159
Period size: 54 Copynumber: 3.2 Consensus size: 53
64505228 ACCCCCAGTT
** * *
64505238 TGTAAAATTACCGAAATACCCCCG-ATTTGTAAAATCATCGAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTAGTA-TTGTAAAATTATCGAAATACCCT-GTA-G
* *
64505292 TGTAAAATTACTGAAATACCTCTAGT-TTGTAAAATT-TCTGAAATAACCTTGTAG
1 TGTAAAATTACCGAAATACC-CTAGTATTGTAAAATTATC-GAAAT-ACCCTGTAG
* * *
64505346 TGTAAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTAGTATTGTAAAATTATCGAAATA-CCCTGTAG
*
64505400 GGTAAAAT
1 TGTAAAAT
64505408 GACTATTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
53 7 0.07
54 80 0.83
55 9 0.09
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (53 bp):
TGTAAAATTACCGAAATACCCTAGTATTGTAAAATTATCGAAATACCCTGTAG
Found at i:64505549 original size:34 final size:34
Alignment explanation
Indices: 64505452--64505550 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 34
64505442 GGACTATGAA
* * *
64505452 TTTAACTGATTTGATTGTGATTATATGACCGTGT
1 TTTAACTGATTTGACTGTGATTGTATGACTGTGT
*
64505486 TTTAACTGATTTGACTATGATTGTATGACTGTGT
1 TTTAACTGATTTGACTGTGATTGTATGACTGTGT
* * *
64505520 TTTAATTGACTTGACTGTGGTTGTATGACTG
1 TTTAACTGATTTGACTGTGATTGTATGACTG
64505551 ACATGCTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.46
Consensus pattern (34 bp):
TTTAACTGATTTGACTGTGATTGTATGACTGTGT
Found at i:64511942 original size:58 final size:57
Alignment explanation
Indices: 64511880--64511993 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
64511870 ATAGAAATGG
* * * *
64511880 TGAAAATTGATAAATGAGAAACATTTGGAAATGAATGTGTTTTTCACCAAAATGAAAA
1 TGAAAATGGAGAAATGA-AAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAAA
* * *
64511938 TGAAAATGGAGATATGAAAACATTTGGAAATTAATGTGATTTCCTCCAAAATGAAA
1 TGAAAATGGAGAAATGAAAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAA
64511994 CAAAAAAGGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 35 0.71
58 14 0.29
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.29
Consensus pattern (57 bp):
TGAAAATGGAGAAATGAAAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAAA
Found at i:64512014 original size:57 final size:56
Alignment explanation
Indices: 64511898--64512014 Score: 128
Period size: 57 Copynumber: 2.1 Consensus size: 56
64511888 GATAAATGAG
* * * * * *
64511898 AAACATTTGGAAATGAATGTGTTTTTCACCAAAATGAAAATGAAAATGGAGATATGA
1 AAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAAA-GAAAAAGGAAAAAAGA
* *
64511955 AAACATTTGGAAATTAATGTGATTTCCTCCAAAATGAAACA-AAAAAGGAAAAAAAGA
1 AAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAA-AGAAAAAGG-AAAAAAGA
64512012 AAA
1 AAA
64512015 TGACTTGGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
56 6 0.12
57 43 0.86
58 1 0.02
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.24
Consensus pattern (56 bp):
AAACATTTGGAAATGAATGTGATTTCCACCAAAATGAAAAGAAAAAGGAAAAAAGA
Done.