Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 229 of 444
Found at i:64512585 original size:27 final size:27
Alignment explanation
Indices: 64512555--64512608 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
64512545 TGAGAGTTTA
64512555 TTCTTTAAGTATTAAATCTATTTTCTG
1 TTCTTTAAGTATTAAATCTATTTTCTG
64512582 TTCTTTAAGTATTAAATCTATTTTCTG
1 TTCTTTAAGTATTAAATCTATTTTCTG
64512609 AAATAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.07, T:0.56
Consensus pattern (27 bp):
TTCTTTAAGTATTAAATCTATTTTCTG
Found at i:64514242 original size:24 final size:24
Alignment explanation
Indices: 64514209--64514256 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
64514199 TTTCATTTTG
*
64514209 ATTTTGATTTTTCTTTCTTCCATC
1 ATTTTCATTTTTCTTTCTTCCATC
64514233 ATTTTCATTTTTCTTTCTTCCATC
1 ATTTTCATTTTTCTTTCTTCCATC
64514257 TTCTTATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.23, G:0.02, T:0.62
Consensus pattern (24 bp):
ATTTTCATTTTTCTTTCTTCCATC
Found at i:64516715 original size:20 final size:20
Alignment explanation
Indices: 64516674--64516717 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
64516664 CATTTTACAA
* *
64516674 ACAATTCATAATCATCATTC
1 ACAAATCATAATCATAATTC
64516694 ACAAATCATAATCA-AATATC
1 ACAAATCATAATCATAAT-TC
64516714 ACAA
1 ACAA
64516718 TAGAGTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (20 bp):
ACAAATCATAATCATAATTC
Found at i:64518994 original size:37 final size:37
Alignment explanation
Indices: 64518940--64519010 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
64518930 GCTCAGACGA
*
64518940 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTCACCCGGACAT
*
64518977 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTCACCCGGA
64519011 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.21
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTCACCCGGACAT
Found at i:64519126 original size:48 final size:48
Alignment explanation
Indices: 64519055--64519730 Score: 1066
Period size: 48 Copynumber: 14.0 Consensus size: 48
64519045 TGTTACAACA
* * * *
64519055 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
64519103 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATA--TCACACATATAT
* *
64519153 TTCACATTAGCCATTCTGCTTTACCATATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
64519201 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
64519249 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
64519297 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
64519345 TTCACATTCGCCATTCGGCTTTACCACATATACATATTACACAGATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
64519393 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
64519441 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
64519489 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
64519537 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
64519585 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * * *
64519633 TTCACATTCGCCATTAGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
64519681 TTCACATTCA-CCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCACACATATAT
64519729 TT
1 TT
64519731 ATTTATCTTG
Statistics
Matches: 578, Mismatches: 47, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
48 537 0.93
50 41 0.07
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:64522798 original size:148 final size:149
Alignment explanation
Indices: 64522529--64522825 Score: 560
Period size: 148 Copynumber: 2.0 Consensus size: 149
64522519 TTTCTTTAGT
*
64522529 TCTTGATCTATATAAATTTAAATTTAACTTATTCAATTTCACATTCATTCAAATCAATCCAAAAA
1 TCTTGATCAATATAAATTTAAATTTAACTTATTCAATTTCACATTCATTCAAATCAATCCAAAAA
*
64522594 CACATATTTAGGGCACTTTACAAACTAGCCTTCACATTTTCACATATTGACACTTAAGTCCCTAT
66 CACATATTTAGGGCACTTTACAAACTAGCCCTCACATTTTCACATATTGACACTTAAGTCCCTAT
64522659 TTCACAAAATCACAAAATA
131 TTCACAAAATCACAAAATA
64522678 TCTTGATCAATATAAATTTAAATTTAACTTATTC-ATTTCACATTCATTCAAATCAATCCAAAAA
1 TCTTGATCAATATAAATTTAAATTTAACTTATTCAATTTCACATTCATTCAAATCAATCCAAAAA
*
64522742 CACATATTTAGGGCACTTTACAAACTAGCCCTCACATTTTCACATTTTGACACTTAAGTCCCTAT
66 CACATATTTAGGGCACTTTACAAACTAGCCCTCACATTTTCACATATTGACACTTAAGTCCCTAT
64522807 TTCACAAAATCACAAAATA
131 TTCACAAAATCACAAAATA
64522826 CACATAATTT
Statistics
Matches: 145, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
148 112 0.77
149 33 0.23
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.35
Consensus pattern (149 bp):
TCTTGATCAATATAAATTTAAATTTAACTTATTCAATTTCACATTCATTCAAATCAATCCAAAAA
CACATATTTAGGGCACTTTACAAACTAGCCCTCACATTTTCACATATTGACACTTAAGTCCCTAT
TTCACAAAATCACAAAATA
Found at i:64524817 original size:16 final size:16
Alignment explanation
Indices: 64524796--64524838 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
64524786 ATGAATCGGC
* *
64524796 AAAAGCCGAAATGCCG
1 AAAAGCCAAAATGCCA
64524812 AAAAGCCAAAATGCCA
1 AAAAGCCAAAATGCCA
*
64524828 AAAAGCTAAAA
1 AAAAGCCAAAA
64524839 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.56, C:0.21, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:64525106 original size:29 final size:29
Alignment explanation
Indices: 64525073--64525164 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
64525063 TGGGCCCATC
64525073 GGGCCATATAAATGTGATTTGGG-TCTAAT
1 GGGCCATATAAATGTGATTTGGGCT-TAAT
* * *
64525102 GGGCCATATACAGGTGATTTGGGCTTAAA
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* *
64525131 GGGCCATATGAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
64525159 GGGCCA
1 GGGCCA
64525165 GATACAGGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 16 0.30
29 37 0.69
30 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.29
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCTTAAT
Found at i:64527631 original size:30 final size:30
Alignment explanation
Indices: 64527576--64527706 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
64527566 ATAGTGAATC
*
64527576 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
64527605 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
64527635 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
64527663 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
64527693 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64527707 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:64527686 original size:58 final size:58
Alignment explanation
Indices: 64527575--64527706 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
64527565 TATAGTGAAT
* * * * *
64527575 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
64527634 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
64527692 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
64527707 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:64531771 original size:29 final size:29
Alignment explanation
Indices: 64531718--64531810 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
64531708 TCGCACACCC
* *
64531718 AGTGCCGTAT-TTTTCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
64531746 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
64531775 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
64531804 AGTGCCA
1 AGTGCCA
64531811 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 9 0.15
29 52 0.85
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:64533156 original size:18 final size:18
Alignment explanation
Indices: 64533123--64533161 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
64533113 TCCACACCCA
64533123 TTTTTTTTTCATCATTATCT
1 TTTTTTTTTCA-CATT-TCT
64533143 TTTTTTTTTC-CATTTCT
1 TTTTTTTTTCACATTTCT
64533160 TT
1 TT
64533162 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
20 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTTCACATTTCT
Found at i:64538404 original size:30 final size:30
Alignment explanation
Indices: 64538349--64538480 Score: 155
Period size: 30 Copynumber: 4.5 Consensus size: 30
64538339 ATAGTGAATC
*
64538349 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
64538378 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
64538408 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * * *
64538436 CGCACACTTAGTGATGTACAATTTTAAAACC
1 CGCACACTTAGTGCTATATAATTTT-CAACT
64538467 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64538481 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 19 0.21
30 31 0.34
31 17 0.19
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:64538471 original size:59 final size:58
Alignment explanation
Indices: 64538348--64538480 Score: 160
Period size: 59 Copynumber: 2.3 Consensus size: 58
64538338 TATAGTGAAT
* * * * * *
64538348 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGATATACAATTTTAAAC
* *
64538407 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGATGTACAATTTTAAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGATATACAATTTT-AAAC
64538466 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
64538481 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 2 0.03
58 25 0.40
59 36 0.57
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGATATACAATTTTAAAC
Found at i:64542826 original size:19 final size:17
Alignment explanation
Indices: 64542793--64542831 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
64542783 CCTAATTTTT
64542793 CCTTTTCTTTTTCTTTC
1 CCTTTTCTTTTTCTTTC
64542810 CCTTTTCCTTCTTTCTTTC
1 CCTTTT-CTT-TTTCTTTC
64542829 CCT
1 CCT
64542832 GCTAATCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.30
18 3 0.15
19 11 0.55
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
CCTTTTCTTTTTCTTTC
Found at i:64542889 original size:18 final size:19
Alignment explanation
Indices: 64542844--64542890 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
64542834 TAATCGTGCC
* *
64542844 TTCTTTCTTTCTTTTCTTA
1 TTCTTTATTTCTTTTCATA
64542863 TGT-TTTATTTCTTTT-ATA
1 T-TCTTTATTTCTTTTCATA
64542881 TTCTTTATTT
1 TTCTTTATTT
64542891 AATCAATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 1 0.04
18 10 0.42
19 12 0.50
20 1 0.04
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.74
Consensus pattern (19 bp):
TTCTTTATTTCTTTTCATA
Found at i:64551527 original size:6 final size:6
Alignment explanation
Indices: 64551518--64551552 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
64551508 GGAATACACC
*
64551518 GTAACA GTAACA GTAATA GTAACA GTAACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
64551553 GGTACACAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:64552465 original size:20 final size:18
Alignment explanation
Indices: 64552427--64552470 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
64552417 AAACCCTAAT
64552427 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
64552444 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
64552464 TTTCCCT
1 TTTCCCT
64552471 ACTAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:64568815 original size:29 final size:29
Alignment explanation
Indices: 64568782--64568855 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
64568772 GTGACGAGAT
64568782 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64568811 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
64568840 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64568856 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64568871 original size:29 final size:29
Alignment explanation
Indices: 64568839--64568914 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
64568829 CTGGAAATAT
* *
64568839 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
64568868 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
64568897 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
64568915 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:64568882 original size:58 final size:58
Alignment explanation
Indices: 64568782--64568914 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
64568772 GTGACGAGAT
* * * * * *
64568782 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
64568840 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
64568898 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
64568915 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:64576691 original size:29 final size:29
Alignment explanation
Indices: 64576658--64576731 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
64576648 GTGACGAGAT
64576658 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64576687 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
64576716 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64576732 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64576747 original size:29 final size:29
Alignment explanation
Indices: 64576715--64576790 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
64576705 CTGGAAATAT
* *
64576715 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
64576744 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
64576773 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
64576791 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:64576758 original size:58 final size:58
Alignment explanation
Indices: 64576658--64576790 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
64576648 GTGACGAGAT
* * * * * *
64576658 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
64576716 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
64576774 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
64576791 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:64581672 original size:43 final size:43
Alignment explanation
Indices: 64581611--64581699 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
64581601 ATCTCCTAAT
* * *
64581611 AGGATTATCGCGTGGGAGATATCATTATCAATCGTCATCAACC
1 AGGATTATCGCGTGGGAGATAACATCATCAATCATCATCAACC
*
64581654 AGGATTATCGCGTGGGAGATAACGTCATCAATCATCATCAACC
1 AGGATTATCGCGTGGGAGATAACATCATCAATCATCATCAACC
64581697 AGG
1 AGG
64581700 TGTGTAAACG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
AGGATTATCGCGTGGGAGATAACATCATCAATCATCATCAACC
Found at i:64586778 original size:48 final size:48
Alignment explanation
Indices: 64586714--64587042 Score: 577
Period size: 48 Copynumber: 6.9 Consensus size: 48
64586704 TATATATGTG
* * *
64586714 TGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
64586762 TGTGGTAAAGCAGAATGGCTAGTGTGAAATATCTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64586810 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
64586858 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTATGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
64586906 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64586954 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
64587002 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
64587043 GTGTGTATAT
Statistics
Matches: 268, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 268 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:64588578 original size:40 final size:40
Alignment explanation
Indices: 64588525--64588842 Score: 555
Period size: 40 Copynumber: 8.0 Consensus size: 40
64588515 TTGAGAGTTA
*
64588525 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
64588565 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
64588605 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
64588645 TATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
64588685 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
64588725 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
64588765 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
64588805 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
64588843 AATGTGTATT
Statistics
Matches: 266, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 266 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:64590435 original size:48 final size:48
Alignment explanation
Indices: 64590373--64590797 Score: 728
Period size: 48 Copynumber: 8.9 Consensus size: 48
64590363 TATATATGTG
* *
64590373 TGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
64590421 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTTTA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
64590469 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
64590517 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
64590565 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
64590613 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
64590661 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
64590709 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* * *
64590757 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
64590798 GTGTGTATAT
Statistics
Matches: 363, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 1 0.00
48 361 0.99
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:64595256 original size:43 final size:43
Alignment explanation
Indices: 64595195--64595284 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
64595185 AGTCTCCTAA
*
64595195 CAGGATTATCGCGTGGGAGATATCATCATCAATCATCATCAAC
1 CAGGATTATCGCATGGGAGATATCATCATCAATCATCATCAAC
* *
64595238 CAGGATTATCGCATGGGAGATATCGTCATCAATCGTCATCAAC
1 CAGGATTATCGCATGGGAGATATCATCATCAATCATCATCAAC
64595281 CAGG
1 CAGG
64595285 TGTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (43 bp):
CAGGATTATCGCATGGGAGATATCATCATCAATCATCATCAAC
Found at i:64602743 original size:30 final size:31
Alignment explanation
Indices: 64602676--64602749 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
64602666 ATAATACCTA
*
64602676 GGCCGAAGCGTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
64602707 GGCCGAAGCCTTTTCATAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
64602737 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
64602750 ACTGTAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:64603001 original size:25 final size:25
Alignment explanation
Indices: 64602969--64603038 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
64602959 CTCTTTTAAT
*
64602969 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
64602994 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
64603019 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
64603039 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:64604081 original size:27 final size:26
Alignment explanation
Indices: 64603942--64604181 Score: 165
Period size: 27 Copynumber: 8.8 Consensus size: 26
64603932 ATTTCATCCT
* * *
64603942 ACAAGGGTGTTTTGGTAAATCTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **
64603968 ACCAAGGGTATTTTAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *** *
64603995 ACCAATGGTATTTCAATAATTTTTAGAAAA
1 A-CAAGGGTATTTTGGTAA-TTTT--ACAA
* **
64604025 AGTCAAGGGTATTTTTGTAATTTTGTAA
1 A--CAAGGGTATTTTGGTAATTTTACAA
64604053 ATCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** * * *
64604080 ATTGAGGGTATTTCGATAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
64604107 ACCAGTGGTATTTCGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
64604134 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
64604161 ACTAGGGGTATTTTGGTAATT
1 AC-AAGGGTATTTTGGTAATT
64604182 CTATCCTACA
Statistics
Matches: 174, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 143 0.82
28 8 0.05
30 7 0.04
31 13 0.07
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:64604117 original size:54 final size:54
Alignment explanation
Indices: 64604058--64604214 Score: 176
Period size: 54 Copynumber: 2.9 Consensus size: 54
64604048 TGTAAATCAA
*
64604058 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACCAG
* * * * * *
64604112 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACCAG
* **
64604166 GGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTC-AGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGA-TAATTTCACAA
64604215 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
54 80 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACCAG
Found at i:64604198 original size:81 final size:81
Alignment explanation
Indices: 64604058--64604214 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 81
64604048 TGTAAATCAA
* * *
64604058 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTCGG
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTCAG
*
64604123 TAATTTTACAAACTAG
66 TAATTTCACAAACTAG
* * **
64604139 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTATTT
1 GGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTC-A-CAAACCAGGGGTATTT
64604201 CAGTAATTTCACAA
63 CAGTAATTTCACAA
64604215 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.05
81 58 0.89
82 4 0.06
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:64604221 original size:27 final size:27
Alignment explanation
Indices: 64604058--64604221 Score: 136
Period size: 27 Copynumber: 6.1 Consensus size: 27
64604048 TGTAAATCAA
* * *
64604058 GGGTATTTTGGTAATTTTACAAATTGA-
1 GGGTATTTCGGTAATTTCACAAA-CGAG
* *
64604085 GGGTATTTCGATAATTTCACAAACCAG
1 GGGTATTTCGGTAATTTCACAAACGAG
* * *
64604112 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACGAG
* * *
64604139 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACGAG
* **
64604166 GGGTATTTTGGTAA-TTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTC-A-CAAACGAG
* *
64604193 GGGTATTTCAGTAATTTCACAATCGAG
1 GGGTATTTCGGTAATTTCACAAACGAG
64604220 GG
1 GG
64604222 TAAAACTATA
Statistics
Matches: 113, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.04
27 102 0.90
28 6 0.05
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAACGAG
Found at i:64604268 original size:27 final size:27
Alignment explanation
Indices: 64604213--64604275 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
64604203 GTAATTTCAC
* *
64604213 AATCGAGGGTAAAACTATAATTTTGTA
1 AATCGAGGGTAAAACTATAATTCTATA
*
64604240 AATCGAGGGTAAAAC-AGTGATTCTATA
1 AATCGAGGGTAAAACTA-TAATTCTATA
64604267 AATCGAGGG
1 AATCGAGGG
64604276 CATTTCTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACTATAATTCTATA
Found at i:64606789 original size:40 final size:40
Alignment explanation
Indices: 64606730--64606834 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
64606720 CGGCCAAAAA
* * *
64606730 TCGGCTATTTGTGGTACTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * *
64606770 TCGGCTATATATGGCACTTAGTGTGCTATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
** * *
64606810 TCAACTATGTACGGCACTTAGTGTG
1 TCGGCTATATATGGCACTTAGTGTG
64606835 TGAGATATCG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:64606875 original size:28 final size:28
Alignment explanation
Indices: 64606822--64606875 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
64606812 AACTATGTAC
* *
64606822 GGCACTTAGTGTGTGAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGACATCGAGTGT
* *
64606850 GGCACTTAGTGTGCGAGGCATTGAGT
1 GGCACTTAGTGTGCGAGACATCGAGT
64606876 ATTCTATGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.20, C:0.13, G:0.37, T:0.30
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGACATCGAGTGT
Found at i:64608868 original size:71 final size:71
Alignment explanation
Indices: 64608784--64608947 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64608774 CGATTTGTCT
64608784 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64608849 CTTTCA
66 CTTTCA
64608855 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64608920 CTTTCA
66 CTTTCA
64608926 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64608948 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64608985 original size:71 final size:70
Alignment explanation
Indices: 64608784--64608981 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
64608774 CGATTTGTCT
* * * *
64608784 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64608849 CTTTCA
65 CTTTCA
* * * *
64608855 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64608920 CTTTCA
65 CTTTCA
* *
64608926 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64608982 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64616021 original size:40 final size:40
Alignment explanation
Indices: 64615947--64616118 Score: 199
Period size: 40 Copynumber: 4.3 Consensus size: 40
64615937 ATATAACCGA
* * *
64615947 CTAAGATCCGAAAGCATTCGTGCGAGTT-TCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGT-TATATCCGGG
* * * *
64615987 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
* *
64616027 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATTCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
*
64616067 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT-CTGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
64616106 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
64616119 ATACTTGGGC
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 94 0.83
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:64627296 original size:39 final size:40
Alignment explanation
Indices: 64627178--64627352 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
64627168 CGGATGATAA
* * *
64627178 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
64627218 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
64627258 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
64627297 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
64627337 -C-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
64627353 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 13 0.11
39 36 0.31
40 67 0.57
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:64627335 original size:79 final size:80
Alignment explanation
Indices: 64627178--64627352 Score: 243
Period size: 79 Copynumber: 2.2 Consensus size: 80
64627168 CGGATGATAA
* *
64627178 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
64627243 TGCTAGTGATTATAT
66 TGCGAGTGATTATAT
* * *
64627258 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
64627322 TGCGAGTTG-TTATAT
66 TGCGAG-TGATTATAT
64627337 -CGG-CTAA-ATCCCGAAG
1 CCGGACTAAGAT-CCGAAG
64627353 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
76 1 0.01
77 4 0.05
78 9 0.10
79 60 0.70
80 12 0.14
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTGATTATAT
Found at i:64629372 original size:40 final size:40
Alignment explanation
Indices: 64629288--64629378 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
64629278 CAATTTGTGG
* * * *
64629288 CACTTAGTGTGCGATTCTACATAGCTTCGGCTATATATGG
1 CACTTAGTGTGCGATTCTACATAGCTTCGACAATATACGA
* *
64629328 CACTTAGTGTGCGATT-TGAGATAGCTTCGACAATGTACGA
1 CACTTAGTGTGCGATTCT-ACATAGCTTCGACAATATACGA
64629368 CACTTAGTGTG
1 CACTTAGTGTG
64629379 TGTGATATCG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (40 bp):
CACTTAGTGTGCGATTCTACATAGCTTCGACAATATACGA
Found at i:64633632 original size:21 final size:21
Alignment explanation
Indices: 64633608--64633657 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
64633598 TATAATCTTC
64633608 GAATTCCCTCGGTCTAAGTAT
1 GAATTCCCTCGGTCTAAGTAT
*
64633629 GAATTCCCTCGGTCTAAGTCT
1 GAATTCCCTCGGTCTAAGTAT
64633650 GAATTCCC
1 GAATTCCC
64633658 CTTTTCTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (21 bp):
GAATTCCCTCGGTCTAAGTAT
Found at i:64636102 original size:30 final size:31
Alignment explanation
Indices: 64636066--64636126 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
64636056 TAATTTTTTA
64636066 GTTTAGGGGCAAAATCATAATTTTG-CAAAG
1 GTTTAGGGGCAAAATCATAATTTTGTCAAAG
**
64636096 GTTTAGGGGCAAAATTGTAATTTTGTCAAAG
1 GTTTAGGGGCAAAATCATAATTTTGTCAAAG
64636127 TTTGAGTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.33
Consensus pattern (31 bp):
GTTTAGGGGCAAAATCATAATTTTGTCAAAG
Found at i:64636917 original size:48 final size:48
Alignment explanation
Indices: 64636854--64636962 Score: 164
Period size: 48 Copynumber: 2.3 Consensus size: 48
64636844 ATTAAGGACT
* * *
64636854 CCATGTAAGACCACATCAAGATGTGGCTTTGGCACTAAGACAAGGATA
1 CCATGTAAGACCACATCAAGATGTGGCATTGACACTAAGACAAGAATA
* * *
64636902 CCATGTAAGAGCACATCAAGATGTGGCATTGACACTAAGGCATGAATA
1 CCATGTAAGACCACATCAAGATGTGGCATTGACACTAAGACAAGAATA
64636950 CCATGTAAGACCA
1 CCATGTAAGACCA
64636963 TGTTTGGAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (48 bp):
CCATGTAAGACCACATCAAGATGTGGCATTGACACTAAGACAAGAATA
Found at i:64637006 original size:47 final size:47
Alignment explanation
Indices: 64636947--64637057 Score: 186
Period size: 47 Copynumber: 2.4 Consensus size: 47
64636937 TAAGGCATGA
64636947 ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAAG
1 ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAAG
* * *
64636994 ATACCATGTAAGACCAAGTTTGGAACATGGCATTTGGTAAGATAAGG
1 ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAAG
*
64637041 ATATCATGTAAGACCAT
1 ATACCATGTAAGACCAT
64637058 ACCAAGGCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAAG
Found at i:64637101 original size:54 final size:54
Alignment explanation
Indices: 64637037--64637216 Score: 186
Period size: 55 Copynumber: 3.3 Consensus size: 54
64637027 TTGGTAAGAT
* *
64637037 AAGGATATCATGTAAGACCATACCAAGGCATAGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATACCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
64637091 AAGGAAATCATGTAAGACCA-AGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATATCATGTAAGACCATA-CCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
** * * *
64637147 AAGG-TCGCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 AAGGATATCATGTAAGACCATACCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
64637199 AAGTATACCACGTAAGAC
1 AAGGATATCATGTAAGAC
64637217 GATGTCAAGA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
52 3 0.03
53 16 0.16
54 39 0.38
55 40 0.39
56 4 0.04
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATACCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:64641814 original size:40 final size:40
Alignment explanation
Indices: 64641749--64641972 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
64641739 TATTCGGATG
*
64641749 ATATCCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
64641789 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
64641832 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
64641872 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64641912 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64641952 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64641973 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:64641892 original size:83 final size:80
Alignment explanation
Indices: 64641753--64641972 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
64641743 CGGATGATAT
* * * **
64641753 CCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACTATATTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
64641818 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
64641836 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
64641901 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
64641916 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
64641973 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.36
81 2 0.02
83 62 0.50
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:64645933 original size:30 final size:31
Alignment explanation
Indices: 64645885--64645942 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
64645875 TTTCCTAGCC
*
64645885 TAGGGGCAAAATCATAATTCTG-CAAAGGTT
1 TAGGAGCAAAATCATAATTCTGCCAAAGGTT
** *
64645915 TAGGAGCAAAATTGTAATTTTGCCAAAG
1 TAGGAGCAAAATCATAATTCTGCCAAAG
64645943 TTTGAGTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (31 bp):
TAGGAGCAAAATCATAATTCTGCCAAAGGTT
Found at i:64646485 original size:44 final size:44
Alignment explanation
Indices: 64646437--64646520 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
64646427 TTGATATCTT
* *
64646437 AAAGTCCATAGTT-GTACCATGGCAATTAAGGAAGAATTGAAAAA
1 AAAGTCCAT-GTTCATAACATGGCAATTAAGGAAGAATTGAAAAA
* *
64646481 AAAGTCCATGTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGA
64646521 CGGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGAAAAA
Found at i:64648153 original size:29 final size:29
Alignment explanation
Indices: 64648121--64648193 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
64648111 CTTCGAGCTC
* *
64648121 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64648150 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64648179 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
64648194 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:64649405 original size:24 final size:24
Alignment explanation
Indices: 64649364--64649419 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
64649354 TTTTTTTCCT
64649364 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
64649389 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
64649412 TATTCTTT
1 T-TTCTTT
64649420 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:64656050 original size:29 final size:29
Alignment explanation
Indices: 64656018--64656090 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
64656008 CTTCGAGCTC
* *
64656018 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64656047 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64656076 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
64656091 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:64657776 original size:54 final size:55
Alignment explanation
Indices: 64657689--64657836 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 55
64657679 TTTGGTAAGA
*
64657689 CAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTAGAAGG
1 CAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTAGAAGG
* * * *
64657743 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG
1 CAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTAGAAGG
*** *
64657798 CAAAGG-CCCCATGAAAGACCATGCCAAGGCATGGCATTG
1 C-AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTG
64657837 GTGAGTTCAT
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 42 0.52
55 35 0.43
56 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (55 bp):
CAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTAGAAGG
Found at i:64657819 original size:55 final size:54
Alignment explanation
Indices: 64657689--64657861 Score: 190
Period size: 54 Copynumber: 3.2 Consensus size: 54
64657679 TTTGGTAAGA
* * *
64657689 CAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTAGAAGG
1 CAAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTAGAAGG
* * * *
64657743 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG
1 CAAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTAGAAGG
** * *
64657798 CAAAGG-CCCCATGAAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATA-AA-G
1 C-AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTC-TAGAAGG
*
64657851 CAAGGATACCA
1 CAAGGAAACCA
64657862 CATCATCGTT
Statistics
Matches: 101, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
52 4 0.04
53 5 0.05
54 45 0.45
55 43 0.43
56 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
CAAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTAGAAGG
Found at i:64658253 original size:55 final size:54
Alignment explanation
Indices: 64658119--64658321 Score: 194
Period size: 54 Copynumber: 3.8 Consensus size: 54
64658109 TGGCATTTGG
* * * ** * * *
64658119 TAAGACAAGGATATCATGTAAGACCATCACAAGGCATGGCATTGCTAAGTTCTA
1 TAAGGCAAGGAAACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTA
* *
64658173 AAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGCAAGGAAACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTA
** * * *
64658228 TAAGGCAAAGG-CCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGGC-AAGGAAACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTA
* * * **
64658281 TAAAGCAAGGATACCACGTAAGATGATGTCAAGACATGGCA
1 TAAGGCAAGGAAACCATGTAAGACCATGTCAAGACATGGCA
64658322 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 44 0.36
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
TAAGGCAAGGAAACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTA
Found at i:64662156 original size:22 final size:22
Alignment explanation
Indices: 64662114--64662157 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
64662104 AATTATTTAC
* *
64662114 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
64662136 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
64662158 AAGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:64662458 original size:40 final size:40
Alignment explanation
Indices: 64662384--64662565 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
64662374 AACCCAAGTA
* * *
64662384 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
64662423 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
64662463 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
64662503 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
64662543 CCTTCGGGACTTAGACCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64662566 CATTCAAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.89
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:64675111 original size:39 final size:40
Alignment explanation
Indices: 64675042--64675260 Score: 308
Period size: 39 Copynumber: 5.5 Consensus size: 40
64675032 TATTCGGATG
*
64675042 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGC-AGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
64675080 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCT
*
64675123 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
*
64675162 ATATCCGGGCTAAGTCCCGAAGGCA-TT-TGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
*
64675200 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
*
64675240 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64675261 ATACTTGGGT
Statistics
Matches: 166, Mismatches: 6, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
37 8 0.05
38 43 0.26
39 60 0.36
40 15 0.09
41 2 0.01
43 38 0.23
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:64675250 original size:77 final size:79
Alignment explanation
Indices: 64675042--64675260 Score: 306
Period size: 77 Copynumber: 2.8 Consensus size: 79
64675032 TATTCGGATG
* *
64675042 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATT
64675107 TGTGCGAGTAGTTGCT
66 TGTGC--GTAGTTGCT
64675123 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
64675187 -TT-TGC-TAG-TGACT
64 TTTGTGCGTAGTTG-CT
*
64675200 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTGCTATATCCGGGCTAAGTCCCGAAG
64675261 ATACTTGGGT
Statistics
Matches: 129, Mismatches: 5, Indels: 12
0.88 0.03 0.08
Matches are distributed among these distances:
76 2 0.02
77 52 0.40
78 10 0.08
80 3 0.02
81 16 0.12
82 44 0.34
83 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCGTAGTTGCT
Found at i:64683166 original size:39 final size:39
Alignment explanation
Indices: 64683112--64683329 Score: 242
Period size: 39 Copynumber: 5.5 Consensus size: 39
64683102 TATTCGGATG
64683112 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTTACT
* *
64683151 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCG-AGGCATTTGTG-CA--AGTTACT
* *
64683194 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCG-AGGCATTTGTGCAAGTTACT
* ** * *
64683233 ATATCCGGGCTAAGTCCCAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTTACT
* * * *
64683272 ATATCCGGGCTAAGACCCAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTTACT
* *
64683311 ATAT-CTGGCTAAATCCCGA
1 ATATCCGGGCTAAGTCCCGA
64683330 AGATACTTGG
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 11 0.07
39 82 0.53
40 25 0.16
41 1 0.01
42 27 0.17
43 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAAGTTACT
Found at i:64685512 original size:49 final size:47
Alignment explanation
Indices: 64685447--64685574 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 47
64685437 TGTTGGGTGT
*
64685447 CAGTGTAAGACCTGTCTGGGACATGGCATC-AGCTTGGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTT-GA-ATATGAAAGC
* * * * **
64685496 TAGTGTAAGACCTGTCTAGGACACGGCATCGACTTTAATATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
64685543 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
64685575 GCATTTGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 18 0.27
48 18 0.27
49 30 0.45
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
Found at i:64694034 original size:49 final size:49
Alignment explanation
Indices: 64693957--64694150 Score: 246
Period size: 49 Copynumber: 3.9 Consensus size: 49
64693947 ACTATTGTGA
*
64693957 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64694006 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-T-T
* * * *
64694057 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
64694106 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
64694151 GGCTTCGGCT
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 79 0.65
50 7 0.06
51 36 0.30
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:64694137 original size:100 final size:100
Alignment explanation
Indices: 64693959--64694146 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
64693949 TATTGTGAGG
* *
64693959 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
64694024 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
* *
64694059 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
64694124 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
64694147 AGATGGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
Found at i:64700273 original size:12 final size:12
Alignment explanation
Indices: 64700256--64700288 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
64700246 CCGTGTGTGA
64700256 TACACGGTCATG
1 TACACGGTCATG
64700268 TACACGGTCATG
1 TACACGGTCATG
64700280 TACACGGTC
1 TACACGGTC
64700289 GTGTGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (12 bp):
TACACGGTCATG
Found at i:64701528 original size:13 final size:13
Alignment explanation
Indices: 64701496--64701530 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
64701486 CATGTGAATA
*
64701496 TATGAGCTAGACT
1 TATGAGTTAGACT
64701509 TATGAGTTAGACT
1 TATGAGTTAGACT
64701522 TATGAGTTA
1 TATGAGTTA
64701531 TTAGTGCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (13 bp):
TATGAGTTAGACT
Found at i:64705383 original size:6 final size:7
Alignment explanation
Indices: 64705357--64705382 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64705347 AAAATTAAAG
64705357 TTTTTTA
1 TTTTTTA
64705364 TTTTTTA
1 TTTTTTA
64705371 TTTTTTA
1 TTTTTTA
64705378 TTTTT
1 TTTTT
64705383 AATAAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:64705424 original size:7 final size:7
Alignment explanation
Indices: 64705406--64705435 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
64705396 ATAACAAATA
64705406 ATATATT
1 ATATATT
64705413 AATATATT
1 -ATATATT
64705421 ATATATT
1 ATATATT
64705428 ATATATT
1 ATATATT
64705435 A
1 A
64705436 ATTGTCATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
ATATATT
Found at i:64708643 original size:71 final size:71
Alignment explanation
Indices: 64708555--64708718 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
64708545 GAGATGTATC
64708555 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64708620 AGGACA
66 AGGACA
*
64708626 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
64708691 CGGACA
66 AGGACA
64708697 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64708719 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64716173 original size:71 final size:71
Alignment explanation
Indices: 64716085--64716248 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
64716075 GAGATGTATC
64716085 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64716150 AGGACA
66 AGGACA
*
64716156 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
64716221 CGGACA
66 AGGACA
64716227 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64716249 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64723918 original size:34 final size:34
Alignment explanation
Indices: 64723871--64723946 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
64723861 ATTGCATTTT
*
64723871 CTGATACTGTTATTGTAATGGGCTAAAGCCCACA
1 CTGATACTATTATTGTAATGGGCTAAAGCCCACA
*
64723905 CTGATACTATTATTGTAATGGGCTAAGGCCCACA
1 CTGATACTATTATTGTAATGGGCTAAAGCCCACA
*
64723939 TTGATACT
1 CTGATACT
64723947 GGACTGTAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (34 bp):
CTGATACTATTATTGTAATGGGCTAAAGCCCACA
Found at i:64724382 original size:40 final size:40
Alignment explanation
Indices: 64724327--64724406 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
64724317 CGCAAGAAAG
64724327 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
1 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
64724367 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
1 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
64724407 TTTGTCTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (40 bp):
AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
Found at i:64725701 original size:41 final size:41
Alignment explanation
Indices: 64725644--64725728 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
64725634 GGACGACCTC
64725644 AGAGATAATTTACGAGTTCTAATAGCTCCATAGAGGGAGCG
1 AGAGATAATTTACGAGTTCTAATAGCTCCATAGAGGGAGCG
64725685 AGAGATAATTTACGAGTTCTAATAGCTCCATAGAGGGAGCG
1 AGAGATAATTTACGAGTTCTAATAGCTCCATAGAGGGAGCG
64725726 AGA
1 AGA
64725729 TTTTGTTGCG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (41 bp):
AGAGATAATTTACGAGTTCTAATAGCTCCATAGAGGGAGCG
Found at i:64728249 original size:2 final size:2
Alignment explanation
Indices: 64728242--64728267 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64728232 CTGCTCTAGC
64728242 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64728268 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64729065 original size:40 final size:40
Alignment explanation
Indices: 64728967--64729116 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
64728957 TTCGAATGGT
* * *
64728967 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
64729008 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
64729048 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
64729088 ATTCGGGCTAATTCCCGAAGGCAATTGTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTG
64729117 TGAATCACTA
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:64729132 original size:80 final size:81
Alignment explanation
Indices: 64728969--64729123 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 81
64728959 CGAATGGTAT
* * *
64728969 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
64729034 GTGCGAGTTATCAAAA
66 GTGCGAATCATCAAAA
* * * *
64729050 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATTCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
64729113 TGTGTGAATCA
65 TGTGCGAATCA
64729124 CTATAACCGT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.02
80 37 0.59
81 25 0.40
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCATCAAAA
Found at i:64736781 original size:735 final size:729
Alignment explanation
Indices: 64735322--64736787 Score: 2367
Period size: 729 Copynumber: 2.0 Consensus size: 729
64735312 GTGGGGGAGA
*
64735322 GTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
1 GTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCAAGTCACCG
* *
64735387 AAATGTTTGAACGTAATATTTATTGTCTAGAATATGTATTTATGAATGTGTGAAAATTTCAAGCT
66 AAATGTTTGAACGTAATATTTATTGTCTAGAATATGTAATTATGAATATGTGAAAATTTCAAGCT
* * *
64735452 TCGATTTAGTCGATTGCATGTGAATTCAGTTATTAGGACTTGTGTGACACTTTTGAAATGTGATA
131 TCGATTTAGCCGATTGCATGTGAATTCAGTTAGTAGGACTTGTGTGACACTTTTGAAAAGTGATA
*
64735517 GGCTAATCTATAAGGACCTAATAGTGCATGTAATCAAAAGGGAGGACTTGCATGTCAAATTTCCC
196 GGCTAATCTATAAGGACCTAATAGTGCATGTAATCAAAAGGGAGGACTTGCATGTCAAATTCCCC
* * * *
64735582 CCCTAATAGCTAGTGGCCGGCCATGACAAGGGATTATGGGCAAAACATGTCATGAAACATGTTGT
261 CCCCAATAGCTAGTGGCCGGCCATGACAAGGAATCATGGGCAAAACATGTCATGAAACATGTTAT
* *
64735647 GTAAGTGTATGTTGGAAAAATAAAATAAGGCATGGGTAATAAAAAAATGAAAAAAAAAATGTGTG
326 GTAAGTATATGTGGGAAAAATAAAATAAGGCATGGGTAATAAAAAAATGAAAAAAAAAATGTGTG
***
64735712 TGAGTTCCCCCCCCATTGCCGTGAGTTGAAGAAAAGAAAAGAAAAAAAATTTGTTCATCCTTTCA
391 TGAGTGAACCCCCCATTGCCGTGAGTTGAAGAAAAGAAAAGAAAAAAAATTTGTTCATCCTTTCA
* **
64735777 TTCTCTCTTGGCCGAAAATCTAAGGAAGAAGGAGGGGTTTTTGCTTCATGCTTGGTTTGGAAAGG
456 TTCTCTCTTGGCCGAAAATCTAAGGAAGAAGGAAGGAATTTTGCTTCATGCTTGGTTTGGAAAGG
* *
64735842 ATTAGGAGGAGGTTTGGCCATACTTGTATCTAGATTAAGGTATGTTTGATGTTGTGCCATGAGAT
521 ATTAGGAGGAGGCTTGGCCATACTAGTATCTAGATTAAGGTATGTTTGATGTTGTGCCATGAGAT
*
64735907 TCATGCATGTTTTTGGTTGCTAACTTGATGTTCTTATTAGCCCATGGTTCAAATCCTTGTTATGT
586 TCATGCATGTTTTTGGTTGCTAACTTGATGTTCTTATTAGCCCATGGTTCAAATCCTTGTTATAT
*
64735972 CATGGGGGTGGTATTCGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGCT
651 CATGGGGATGGTATTCGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGCT
64736037 TGCTAATGATACAT
716 TGCTAATGATACAT
64736051 GTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCAAGTCACCG
1 GTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCAAGTCACCG
64736116 AAATGTTTGAACGTAATATTTATTGTCTAGAATATGTAATTATGAATATGTGAAAATTTCAAGCT
66 AAATGTTTGAACGTAATATTTATTGTCTAGAATATGTAATTATGAATATGTGAAAATTTCAAGCT
64736181 TCGATTTAGCCGATTGCATGTGAATTCAGTTAGTAGGACTTGTGTGACACTTTTGAAAAGTGATA
131 TCGATTTAGCCGATTGCATGTGAATTCAGTTAGTAGGACTTGTGTGACACTTTTGAAAAGTGATA
*
64736246 GGCTAATCTATAAGGACCTAATAGTGCATGTAGTC-AAAGGGAGGACTTGCATGTCAAATTCCCC
196 GGCTAATCTATAAGGACCTAATAGTGCATGTAATCAAAAGGGAGGACTTGCATGTCAAATTCCCC
* * *
64736310 CCCCAAGT-TCTAGTGG-CGGCCATGACAAGGAATCATGGGCAAAACATGTCCT-AGACATGTTA
261 CCCCAA-TAGCTAGTGGCCGGCCATGACAAGGAATCATGGGCAAAACATGTCATGAAACATGTTA
** * *
64736372 TGTTGGTACATCATG-GGAGAAAAGAAATAAACAAATAA-GTATGGGTAAT-AAAGAATGAAAAA
325 TGTAAGT--AT-ATGTGG-G--AA-AAAT--A-AAATAAGGCATGGGTAATAAAAAAATGAAAAA
* *
64736434 AAAAATGTGTGTGAGTGAACCCCCCTTTGCCGTGAGTTGAAGAAAAGCAAAGAAAAAAAA-TTGT
380 AAAAATGTGTGTGAGTGAACCCCCCATTGCCGTGAGTTGAAGAAAAGAAAAGAAAAAAAATTTGT
* *
64736498 TCATCTTTTTCTCATTCT-TTTTGGCCGAAAATACTAA-GAAGAAGGAAGGAATTTTGCTTCATG
445 TCATC--CTT-TCATTCTCTCTTGGCCGAAAAT-CTAAGGAAGAAGGAAGGAATTTTGCTTCATG
*
64736561 CTTGGTTTGGAAGAGGATTAGGAGGAGGCTTGGCCATACTAGTGTCTAGATTAAGGTATGTTTGA
506 CTTGGTTTGGAA-AGGATTAGGAGGAGGCTTGGCCATACTAGTATCTAGATTAAGGTATGTTTGA
64736626 TGTTGTGCCATGAGATTCATGCATGTTTTTGGTTGCTAACTTGATGTTCTTATTAGCCCATGGTT
570 TGTTGTGCCATGAGATTCATGCATGTTTTTGGTTGCTAACTTGATGTTCTTATTAGCCCATGGTT
* *
64736691 CAAATCTTTGTTATATCATGGGGATGGTATTTGGCCAAGGTGGATTTTGTGTTAATGCCATTGCA
635 CAAATCCTTGTTATATCATGGGGATGGTATTCGGCCAAGGTGGATTTTGTGTTAATGCCATTGCA
*
64736756 TGTTAAATATGAAGCTTGCTAATGATATAT
700 TGTTAAATATGAAGCTTGCTAATGATACAT
64736786 GT
1 GT
64736788 GATGGTGGAT
Statistics
Matches: 682, Mismatches: 39, Indels: 26
0.91 0.05 0.03
Matches are distributed among these distances:
726 13 0.02
727 33 0.05
728 42 0.06
729 228 0.33
731 2 0.00
732 13 0.02
733 67 0.10
734 61 0.09
735 223 0.33
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (729 bp):
GTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCAAGTCACCG
AAATGTTTGAACGTAATATTTATTGTCTAGAATATGTAATTATGAATATGTGAAAATTTCAAGCT
TCGATTTAGCCGATTGCATGTGAATTCAGTTAGTAGGACTTGTGTGACACTTTTGAAAAGTGATA
GGCTAATCTATAAGGACCTAATAGTGCATGTAATCAAAAGGGAGGACTTGCATGTCAAATTCCCC
CCCCAATAGCTAGTGGCCGGCCATGACAAGGAATCATGGGCAAAACATGTCATGAAACATGTTAT
GTAAGTATATGTGGGAAAAATAAAATAAGGCATGGGTAATAAAAAAATGAAAAAAAAAATGTGTG
TGAGTGAACCCCCCATTGCCGTGAGTTGAAGAAAAGAAAAGAAAAAAAATTTGTTCATCCTTTCA
TTCTCTCTTGGCCGAAAATCTAAGGAAGAAGGAAGGAATTTTGCTTCATGCTTGGTTTGGAAAGG
ATTAGGAGGAGGCTTGGCCATACTAGTATCTAGATTAAGGTATGTTTGATGTTGTGCCATGAGAT
TCATGCATGTTTTTGGTTGCTAACTTGATGTTCTTATTAGCCCATGGTTCAAATCCTTGTTATAT
CATGGGGATGGTATTCGGCCAAGGTGGATTTTGTGTTAATGCCATTGCATGTTAAATATGAAGCT
TGCTAATGATACAT
Found at i:64737793 original size:40 final size:39
Alignment explanation
Indices: 64737703--64737850 Score: 160
Period size: 38 Copynumber: 3.8 Consensus size: 39
64737693 CATTTGAATG
* * *
64737703 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGAT
* *
64737742 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTGAT
*
64737781 ATATCCGGGCTAAGACCCGAAGGCA-TGTGCAAGTT-ACC
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTGA-T
* *
64737819 AAATCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGC
64737851 TTGTGGTTGT
Statistics
Matches: 94, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
37 2 0.02
38 58 0.62
39 5 0.05
40 29 0.31
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTGAT
Found at i:64745816 original size:40 final size:40
Alignment explanation
Indices: 64745650--64745817 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
64745640 CATTTGAATG
* * *
64745650 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
64745690 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
64745730 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
64745770 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
64745810 GTATCCGG
1 ATATCCGG
64745818 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:64747408 original size:2 final size:2
Alignment explanation
Indices: 64747401--64747438 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
64747391 CGGCTCTAGC
64747401 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64747439 GTTTGCACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64750473 original size:28 final size:28
Alignment explanation
Indices: 64750427--64750495 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
64750417 TTTAAAACCC
*
64750427 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64750454 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64750482 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
64750496 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:64754219 original size:28 final size:28
Alignment explanation
Indices: 64754173--64754241 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
64754163 TTTAAAACCC
*
64754173 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64754200 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64754228 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
64754242 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:64762392 original size:71 final size:71
Alignment explanation
Indices: 64762308--64762471 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64762298 CGATTTGTCT
64762308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64762373 CTTTCA
66 CTTTCA
64762379 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64762444 CTTTCA
66 CTTTCA
64762450 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64762472 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64762509 original size:71 final size:70
Alignment explanation
Indices: 64762308--64762505 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
64762298 CGATTTGTCT
* * * *
64762308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64762373 CTTTCA
65 CTTTCA
* * * *
64762379 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64762444 CTTTCA
65 CTTTCA
* *
64762450 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64762506 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64769960 original size:71 final size:71
Alignment explanation
Indices: 64769876--64770039 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64769866 CGATTTGTCT
64769876 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64769941 CTTTCA
66 CTTTCA
64769947 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64770012 CTTTCA
66 CTTTCA
64770018 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64770040 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64770077 original size:71 final size:70
Alignment explanation
Indices: 64769876--64770073 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
64769866 CGATTTGTCT
* * * *
64769876 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64769941 CTTTCA
65 CTTTCA
* * * *
64769947 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64770012 CTTTCA
65 CTTTCA
* *
64770018 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64770074 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64782637 original size:82 final size:80
Alignment explanation
Indices: 64782501--64782714 Score: 267
Period size: 82 Copynumber: 2.7 Consensus size: 80
64782491 CGGATGATAT
* * **
64782501 CCGGGCTAAGTCCCG-AGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCCGGCTAAGTCCCGAAGGCATTCA
64782565 TGCGAGTAGTTG-CT-TAC
66 TGC---TAG-TGACTATAC
*
64782582 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCCGGCTAAGTCCCGAAGGCATTCA
*
64782647 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
64782662 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT-CCGGCTAAATCCC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCCGGCTAAGTCCC
64782715 AAAGATACTT
Statistics
Matches: 120, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
78 2 0.02
79 17 0.14
80 37 0.31
81 17 0.14
82 47 0.39
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCCGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:64782640 original size:40 final size:40
Alignment explanation
Indices: 64782497--64782714 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
64782487 TATTCGGATG
* * *
64782497 ATATCCGGGCTAAGTCCCG-AGGCATTTGTGCAAGTTACT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
64782536 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
64782579 -TA-CCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
64782618 ATATCCCGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
64782658 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
64782698 ATAT-CCGGCTAAATCCC
1 ATATCCCGGCTAAGTCCC
64782715 AAAGATACTT
Statistics
Matches: 155, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.01
39 33 0.21
40 81 0.52
41 7 0.05
42 27 0.17
43 4 0.03
44 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:64795168 original size:47 final size:47
Alignment explanation
Indices: 64795099--64795303 Score: 320
Period size: 47 Copynumber: 4.4 Consensus size: 47
64795089 CCCTTCGGGA
* * * *
64795099 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
64795146 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
64795193 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
64795240 CTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
64795287 TTTATCACATATATACA
1 CTTATCACATATATACA
64795304 TATCACACAT
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:64795357 original size:48 final size:48
Alignment explanation
Indices: 64795277--64795460 Score: 305
Period size: 48 Copynumber: 3.8 Consensus size: 48
64795267 CATCACATGG
* *
64795277 GCCATTAGGCTTTATCACATATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTA-C-CACATATACATATCACACATATATTTCACATTA
* *
64795327 GCCATTCGGCTTTACCACATACACATATCACACATACATTTCACATTA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
*
64795375 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
64795423 GCCATTCGGCTTTACCACATATACATATCACACATATA
1 GCCATTCGGCTTTACCACATATACATATCACACATATA
64795461 CTTATTTATC
Statistics
Matches: 127, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
48 113 0.89
49 1 0.01
50 13 0.10
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.32
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
Found at i:64798245 original size:27 final size:28
Alignment explanation
Indices: 64798188--64798257 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
64798178 AAATTTGTAC
**
64798188 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
64798216 AGCACTAAGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
64798243 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64798258 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 25 0.62
28 15 0.38
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:64804685 original size:28 final size:29
Alignment explanation
Indices: 64804611--64804724 Score: 139
Period size: 28 Copynumber: 4.1 Consensus size: 29
64804601 CACATACCTA
*
64804611 TATATGGCCCACTAGGCCC-AATCTC-TT
1 TATATGGCCCACTAGGCCCAAATCACATT
*
64804638 TCATATGGCCCA-TAGGCCC-ATTCACATT
1 T-ATATGGCCCACTAGGCCCAAATCACATT
* *
64804666 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCCAAATCACATT
*
64804695 CATATGG-CCACTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCCAAATCACATT
64804723 TA
1 TA
64804725 CAATCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
27 21 0.28
28 41 0.55
29 13 0.17
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
TATATGGCCCACTAGGCCCAAATCACATT
Found at i:64812076 original size:49 final size:49
Alignment explanation
Indices: 64812004--64812178 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
64811994 CTGGTATGCA
* *
64812004 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCAGGTACACG
* * * *
64812053 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACA
1 TAGTAGCCTACACTTAGTACTACACAAGCGA-CCAA-TTATCAGGTACACG
* * *
64812104 TAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATTATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCAGGTACACG
*
64812153 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
64812179 CGTGACCTCA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 67 0.60
50 6 0.05
51 39 0.35
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCAGGTACACG
Found at i:64812175 original size:100 final size:100
Alignment explanation
Indices: 64812002--64812183 Score: 319
Period size: 100 Copynumber: 1.8 Consensus size: 100
64811992 ATCTGGTATG
*
64812002 CATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACT
1 CATAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCCGGTACACGTAGTAGCCTACACT
64812067 TAGTACTACACACGTGATCGAAGTTATCAGGTACA
66 TAGTACTACACACGTGATCGAAGTTATCAGGTACA
* * * *
64812102 CATAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCCGGTACACGTAGTAGCCTACACT
64812167 TAGTACTACACACGTGA
66 TAGTACTACACACGTGA
64812184 CCTCACAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTACACTTAGTACTACACAAGCGACCAATTATCCGGTACACGTAGTAGCCTACACT
TAGTACTACACACGTGATCGAAGTTATCAGGTACA
Found at i:64816258 original size:40 final size:40
Alignment explanation
Indices: 64816171--64816355 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 40
64816161 TCGAATGATG
* * * * *
64816171 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64816211 TCTGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
64816251 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64816291 TCCAGG-TTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
64816332 -CCGGGCTATGTCCCGAAGGTATTT
1 TCCGGACTAAGTCCCGAAGGCATTT
64816356 AAACGAGTAG
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64822070 original size:44 final size:43
Alignment explanation
Indices: 64822011--64822177 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
64822001 TAGGATTCCA
*
64822011 ATATGTGATTTCGTGTAAGACCACATCTGGGACATTGGCATCG
1 ATATATGATTTCGTGTAAGACCACATCTGGGACATTGGCATCG
* *
64822054 ATTTATGATTTACGTGTAAGACCATATCTGGGACATTGGCATCG
1 ATATATGATTT-CGTGTAAGACCACATCTGGGACATTGGCATCG
* * * * * * *
64822098 -TATATGAGTTCGGGTATGACC-CTGTCTAGGACAGTGGCATCA
1 ATATATGATTTCGTGTAAGACCAC-ATCTGGGACATTGGCATCG
* * * * *
64822140 ATATGTGATTACATGTAAGACCACATTTGGGACGTTGG
1 ATATATGATTTCGTGTAAGACCACATCTGGGACATTGG
64822178 TGTTGTATGA
Statistics
Matches: 97, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 24 0.25
43 41 0.42
44 32 0.33
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATATGATTTCGTGTAAGACCACATCTGGGACATTGGCATCG
Found at i:64823179 original size:2 final size:2
Alignment explanation
Indices: 64823174--64823202 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
64823164 TATATATATA
64823174 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
64823203 TATTGTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:64828600 original size:40 final size:40
Alignment explanation
Indices: 64828555--64828742 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
64828545 TGAATGATAC
* * * * *
64828555 CCGGGCTAAGTCCCAAAGGCATTTATGCTA-ATGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
64828595 CCGGGCTAAGACCTGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64828635 CCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *** *
64828675 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
64828715 CCGGGTTAAGACTCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
64828743 TTACGGTTAT
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 126 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64843335 original size:40 final size:40
Alignment explanation
Indices: 64843291--64843515 Score: 362
Period size: 40 Copynumber: 5.6 Consensus size: 40
64843281 GCTACTCACT
*
64843291 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
64843331 CAAATGCCTTCGGGACTTAGCCCGGGA-ATAGTCACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATATAGTAACTCGCA
64843371 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64843411 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64843451 CAAATGCCTTTGGGACTTAGCCCGGAAATAGTCACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
64843491 CAAATGCCTTCGGGACTTGGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
64843516 TTATCATCCG
Statistics
Matches: 171, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 166 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64851536 original size:40 final size:40
Alignment explanation
Indices: 64851459--64851636 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
64851449 AAACCAAGTA
* * *
64851459 CCTTCGGAATTTAG-CCGGATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTCGCACAAATG
* *
64851498 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
64851538 CCTTCGGGACTTAGCCCGGGA-ATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTCACTCGCACAAATG
*
64851578 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
* *
64851618 CCTTCAGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
64851637 TTATCATCCG
Statistics
Matches: 126, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.12
40 109 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
Found at i:64856347 original size:33 final size:33
Alignment explanation
Indices: 64856305--64856370 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
64856295 TCCAAAGATA
*
64856305 GAGCATTCGACCAACCCCAAAGTGCTAGACCAC
1 GAGCATTCGACCAACCCCAAAATGCTAGACCAC
*
64856338 GAGCATTCGACCAACCCTAAAATGCTAGACCAC
1 GAGCATTCGACCAACCCCAAAATGCTAGACCAC
64856371 AACACTTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.35, G:0.17, T:0.14
Consensus pattern (33 bp):
GAGCATTCGACCAACCCCAAAATGCTAGACCAC
Found at i:64859369 original size:2 final size:2
Alignment explanation
Indices: 64859362--64859448 Score: 174
Period size: 2 Copynumber: 43.5 Consensus size: 2
64859352 CGAGAACGAT
64859362 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
64859404 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
64859446 AC A
1 AC A
64859449 TATATATATA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 85 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:64884373 original size:17 final size:17
Alignment explanation
Indices: 64884351--64884384 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
64884341 ATTGGAGGAC
64884351 TCTCATTCTAGTCTTTG
1 TCTCATTCTAGTCTTTG
64884368 TCTCATTCTAGTCTTTG
1 TCTCATTCTAGTCTTTG
64884385 GTGACCACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.53
Consensus pattern (17 bp):
TCTCATTCTAGTCTTTG
Found at i:64888827 original size:40 final size:40
Alignment explanation
Indices: 64888770--64888953 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
64888760 TCGAATGATG
* *
64888770 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64888810 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
64888850 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64888888 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64888929 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64888954 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 19 0.15
40 74 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64888905 original size:78 final size:80
Alignment explanation
Indices: 64888770--64888951 Score: 255
Period size: 78 Copynumber: 2.3 Consensus size: 80
64888760 TCGAATGATG
*
64888770 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
64888835 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
64888849 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
64888911 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
64888928 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64888952 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 28 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:64892416 original size:41 final size:41
Alignment explanation
Indices: 64892371--64892488 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64892361 TGAAAGATAA
64892371 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64892412 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64892442 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64892483 ATGTAG
1 ATGTAG
64892489 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64892427 original size:71 final size:71
Alignment explanation
Indices: 64892339--64892502 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64892329 GAGATGTATC
64892339 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64892404 AGGACA
66 AGGACA
64892410 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64892475 AGGACA
66 AGGACA
64892481 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64892503 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64895086 original size:25 final size:25
Alignment explanation
Indices: 64895057--64895106 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64895047 GCCACAAAAG
64895057 TGACTCTTCATTAATTGTCAACCTA
1 TGACTCTTCATTAATTGTCAACCTA
64895082 TGACTCTTCATTAATTGTCAACCTA
1 TGACTCTTCATTAATTGTCAACCTA
64895107 AACTCTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (25 bp):
TGACTCTTCATTAATTGTCAACCTA
Found at i:64899043 original size:13 final size:13
Alignment explanation
Indices: 64899025--64899054 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64899015 AAACATATTT
64899025 AAAACATAACTTG
1 AAAACATAACTTG
*
64899038 AAAACATATCTTG
1 AAAACATAACTTG
64899051 AAAA
1 AAAA
64899055 TAGAGTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:64910927 original size:46 final size:46
Alignment explanation
Indices: 64910860--64911075 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
64910850 GGCAACCTGA
64910860 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
64910906 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
64910952 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
64910998 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
64911044 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
64911076 TCATGCCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:64911055 original size:138 final size:130
Alignment explanation
Indices: 64910810--64911075 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
64910800 AGTGTGCTCT
*
64910810 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
64910875 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
64910940 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
64911005 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
64911070 ATGGCA
123 ATGGCA
64911076 TCATGCCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:64913818 original size:19 final size:20
Alignment explanation
Indices: 64913796--64913853 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
64913786 CAAAAATCAA
64913796 TAAAATTTTTAAAAATTA-T
1 TAAAATTTTTAAAAATTATT
*
64913815 T-AAA-TTTTAATTAAAATATT
1 TAAAATTTTTAA--AAATTATT
64913835 TAAAATTTATTAAAAATTA
1 TAAAATTT-TTAAAAATTA
64913854 GAAAAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
17 6 0.19
18 3 0.10
19 6 0.19
20 2 0.06
21 8 0.26
22 2 0.06
23 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAAAATTTTTAAAAATTATT
Found at i:64913850 original size:20 final size:20
Alignment explanation
Indices: 64913796--64913872 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
64913786 CAAAAATCAA
64913796 TAAAATTT-TTAAAAATTAT
1 TAAAATTTATTAAAAATTAT
*
64913815 TAAATTTTAATT-AAAA-TATT
1 TAAAATTT-ATTAAAAATTA-T
*
64913835 TAAAATTTATTAAAAATTAG
1 TAAAATTTATTAAAAATTAT
* *
64913855 AAAAATATATATAAAAAT
1 TAAAATTTAT-TAAAAAT
64913873 CGTAAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 12 0.26
20 24 0.51
21 11 0.23
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (20 bp):
TAAAATTTATTAAAAATTAT
Found at i:64913897 original size:15 final size:16
Alignment explanation
Indices: 64913877--64913906 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64913867 AAAAATCGTA
64913877 AAAAATATA-AAATAT
1 AAAAATATAGAAATAT
64913892 AAAAATATAGAAATA
1 AAAAATATAGAAATA
64913907 AATTATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAAATATAGAAATAT
Found at i:64913977 original size:11 final size:10
Alignment explanation
Indices: 64913836--64913988 Score: 51
Period size: 10 Copynumber: 15.9 Consensus size: 10
64913826 TAAAATATTT
* *
64913836 AAAATTTATT
1 AAAAATTATA
*
64913846 AAAAATTA-G
1 AAAAATTATA
64913855 AAAAATATATA
1 AAAAAT-TATA
**
64913866 TAAAAATCGTA
1 -AAAAATTATA
64913877 AAAAA-TAT-
1 AAAAATTATA
64913885 -AAAA-TAT-
1 AAAAATTATA
*
64913892 AAAAATATAGA
1 AAAAAT-TATA
64913903 AATAAATTATA
1 AA-AAATTATA
**
64913914 AAATTTTATA
1 AAAAATTATA
* **
64913924 GAAACGTA-A
1 AAAAATTATA
*
64913933 GAAAATTATA
1 AAAAATTATA
64913943 AAAAATGTA-A
1 AAAAAT-TATA
*
64913953 AGAAA-TAT-
1 AAAAATTATA
64913961 -AAAATTCATA
1 AAAAATT-ATA
64913971 AAAAATTAT-
1 AAAAATTATA
64913980 AAAAATTAT
1 AAAAATTAT
64913989 GGTATCAAAA
Statistics
Matches: 108, Mismatches: 20, Indels: 31
0.68 0.13 0.19
Matches are distributed among these distances:
7 10 0.09
8 7 0.06
9 25 0.23
10 39 0.36
11 17 0.16
12 10 0.09
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:64913985 original size:9 final size:9
Alignment explanation
Indices: 64913826--64913988 Score: 57
Period size: 9 Copynumber: 17.1 Consensus size: 9
64913816 AAATTTTAAT
64913826 TAAAATATT-
1 TAAAA-ATTA
*
64913835 TAAAATTTA
1 TAAAAATTA
64913844 TTAAAAATTA
1 -TAAAAATTA
*
64913854 GAAAAATATATA
1 -TAAAA-AT-TA
**
64913866 TAAAAATCG
1 TAAAAATTA
*
64913875 TAAAAAATA
1 TAAAAATTA
64913884 T-AAAA-TA
1 TAAAAATTA
64913891 TAAAAATATA
1 TAAAAAT-TA
*
64913901 GAAATAAATTA
1 -TAA-AAATTA
*
64913912 TAAAATTTTA
1 TAAAA-ATTA
**
64913922 TAGAAACGTA
1 TA-AAAATTA
64913932 -AGAAAATTA
1 TA-AAAATTA
* *
64913941 TAAAAAATG
1 TAAAAATTA
*
64913950 TAAAGAAATA
1 TAAA-AATTA
64913960 T-AAAATTCA
1 TAAAAATT-A
64913969 TAAAAAATTA
1 T-AAAAATTA
64913979 TAAAAATTA
1 TAAAAATTA
64913988 T
1 T
64913989 GGTATCAAAA
Statistics
Matches: 117, Mismatches: 21, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
7 3 0.03
8 13 0.11
9 43 0.37
10 33 0.28
11 19 0.16
12 6 0.05
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (9 bp):
TAAAAATTA
Found at i:64918994 original size:17 final size:16
Alignment explanation
Indices: 64918974--64919042 Score: 63
Period size: 17 Copynumber: 4.3 Consensus size: 16
64918964 TTATTATGTA
*
64918974 ATTTTATTTTTATTTTT
1 ATTTTATTTTTA-TTCT
* *
64918991 ATTTTGTTTCTATTCT
1 ATTTTATTTTTATTCT
64919007 AGTTTT-TTTTTAATTCT
1 A-TTTTATTTTT-ATTCT
64919024 -TTTTATTTTT-TTCT
1 ATTTTATTTTTATTCT
64919038 ATTTT
1 ATTTT
64919043 TGCATAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
14 4 0.09
15 8 0.18
16 13 0.30
17 19 0.43
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (16 bp):
ATTTTATTTTTATTCT
Done.