Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 23 of 444
Found at i:6152713 original size:6 final size:6
Alignment explanation
Indices: 6152705--6152737 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6152695 TATTTACTAT
*
6152705 TATTAT TATTAC TATTAC TATTAC TATTA- TATT
1 TATTAC TATTAC TATTAC TATTAC TATTAC TATT
6152738 TAGCAACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (6 bp):
TATTAC
Found at i:6155396 original size:26 final size:26
Alignment explanation
Indices: 6155359--6155494 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
6155349 TGATACAAAT
* *
6155359 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155385 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
6155411 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155437 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155463 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155489 TGATAA
1 TGATAA
6155495 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6158384 original size:19 final size:20
Alignment explanation
Indices: 6158347--6158386 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
6158337 ATTTAAAAAA
*
6158347 ATGAAATTTTAAATATTATG
1 ATGAAATTTCAAATATTATG
*
6158367 ATGAAA-TTCAAATTTTATG
1 ATGAAATTTCAAATATTATG
6158386 A
1 A
6158387 AAATTTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (20 bp):
ATGAAATTTCAAATATTATG
Found at i:6159516 original size:16 final size:15
Alignment explanation
Indices: 6159490--6159524 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
6159480 TGATGTGAAT
6159490 AATATAAAATATTAA
1 AATATAAAATATTAA
*
6159505 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
6159521 AATA
1 AATA
6159525 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:6159715 original size:20 final size:21
Alignment explanation
Indices: 6159673--6159715 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
6159663 CCTTTTTTAG
* *
6159673 AATAATAATTAAATATACGAA
1 AATAATAATTAAATACACAAA
*
6159694 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
6159714 AA
1 AA
6159716 GGTATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:6159932 original size:11 final size:11
Alignment explanation
Indices: 6159916--6159945 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6159906 TAACATTAAG
6159916 AATATATATAT
1 AATATATATAT
*
6159927 AATATAAATAT
1 AATATATATAT
6159938 AATATATA
1 AATATATA
6159946 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:6160500 original size:18 final size:18
Alignment explanation
Indices: 6160465--6160518 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
6160455 TGAAAAAAGG
6160465 AAAAA-AATAAA-AA-AT
1 AAAAATAATAAAGAAGAT
*
6160480 AAAAATAA-AAATAAGAGT
1 AAAAATAATAAAGAAGA-T
6160498 -AAAATAATAAAGAAGAT
1 AAAAATAATAAAGAAGAT
6160515 AAAA
1 AAAA
6160519 TCACCTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 8 0.25
16 4 0.12
17 9 0.28
18 11 0.34
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATAATAAAGAAGAT
Found at i:6160503 original size:17 final size:17
Alignment explanation
Indices: 6160481--6160519 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
6160471 ATAAAAAATA
*
6160481 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
6160498 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
6160515 AAAAT
1 AAAAT
6160520 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:6160770 original size:26 final size:25
Alignment explanation
Indices: 6160732--6160792 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
6160722 AGGGTTTCTT
6160732 GGTTTTTTTTTTTTGGGGGGGGTTA
1 GGTTTTTTTTTTTTGGGGGGGGTTA
****
6160757 GGTTTTTCTTTTTTTTTTTGGGGTTA
1 GGTTTTT-TTTTTTTGGGGGGGGTTA
6160783 GGTTTTTTTT
1 GGTTTTTTTT
6160793 GGGGGGGACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.03, C:0.02, G:0.30, T:0.66
Consensus pattern (25 bp):
GGTTTTTTTTTTTTGGGGGGGGTTA
Found at i:6161845 original size:13 final size:14
Alignment explanation
Indices: 6161813--6161845 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6161803 ATTTTTTTTG
6161813 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
6161827 GAAAAACAGAATTT
1 GAAAAACAAAATTT
6161841 GAAAA
1 GAAAA
6161846 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:6161926 original size:91 final size:86
Alignment explanation
Indices: 6161456--6162421 Score: 462
Period size: 87 Copynumber: 11.2 Consensus size: 86
6161446 TTGACTCTTT
* * * * ** *
6161456 AAAACTAGACATTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTT
1 AAAAC-AGAAATTGAAAACAGAAATTGAAAATACCTCAG--CGTGTG-TGAGGCTCAACTCACCT
* *
6161521 TTCGCAATATGAGTTGA--TTTTT-
62 CTCGCAATATGAGCTGATTTTTTTG
* *** * * **
6161543 AAAACA-AAATTTGTAAAACAG-ATTATGAAAATACCTCAATATATGACCCGAAACTCAACTCAC
1 AAAACAGAAA-TTG-AAAACAGAAAT-TGAAAATACCTCAGCGTGTG---TGAGGCTCAACTCAC
* *
6161606 CTCTCGTAATATGAGTTGA--TTTTTG
60 CTCTCGCAATATGAGCTGATTTTTTTG
* * * ** *
6161631 CAAAGCATAAATTAAAAAAAAACATCAATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTC
1 -AAAACAGAAATT----GAAAACAGAAATTGAAAATACCTCAGCGTGT-G--TGAGGCTCAACTC
*
6161696 ACCTCTCGCAATATGAGTTGA-TTTTTTG
58 ACCTCTCGCAATATGAGCTGATTTTTTTG
* * * * * *
6161724 ACAAACATAAATTGAAAAAAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTGAACTCACCTCT
1 A-AAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGT-GTGAGGCTCAACTCACCTCT
*
6161789 CGCAATATGAGTTGATTTTTTTTGG
64 CGCAATATGAGCTGA-TTTTTTT-G
* *
6161814 AAAAACA-AAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCAC
1 -AAAACAGAAA-TTG-AAAACAGAAATTGAAAATACCTCAGCGTGT--GT-GAGGCTCAACTCAC
*
6161878 CACTCGCAATATGAGCTGATTTTTTTG
60 CTCTCGCAATATGAGCTGATTTTTTTG
* * * * *
6161905 AAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCT-TGAGGTTCAATTCACCTCT
1 AAA-ACAGAAATTGAA-AACAGAAATTGAAAATACCTCAGCGTGTGTGAGGCTCAACTCACCTCT
*
6161969 CGCAATATGAGCTGATTTTTTTT
64 CGCAATATGAGCTGATTTTTTTG
** ** * *
6161992 AAAGACAGAAATTG-----A-AAA-T--ACCT-CAAC-GTGTCT-TGAGGCTCAACTCACCTCTC
1 AAA-ACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTGTGAGGCTCAACTCACCTCTC
*
6162045 GCAATATGAGTTGA--TTTTTG
65 GCAATATGAGCTGATTTTTTTG
** * ** ** *
6162065 -AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTC-GATATGTGACTCAAGGCTCAACTCACC
1 AAAACAGAAATTGAAAA-CAGAAATTGAAAATACCTCAG-CGTGTG--T-GAGGCTCAACTCACC
*
6162128 TCTCGCAATATGAGTTGA--TTTTTG
61 TCTCGCAATATGAGCTGATTTTTTTG
* * * *
6162152 AAAAATATAAATTG--AA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCT
1 -AAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTG---TGAGGCTCAACTCACCT
*
6162210 CTCGCAATATGAGTTGA-TTTTTTG
62 CTCGCAATATGAGCTGATTTTTTTG
** ** * **
6162234 AAAGACAGAAATTG-----A-AAA-T--AGCT-CAGC-GCGTGAGCCAAGGCTCAACTCACCTCT
1 AAA-ACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTG-TGAGGCTCAACTCACCTCT
*
6162288 CGTAATATGAG-TCGATTTTTTTTTG
64 CGCAATATGAGCT-GA--TTTTTTTG
* * *
6162313 AAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACC
1 AAA-ACAGAAATTG-AAAACAGAAATTGAAAATACCTCAGCGTGTG---TGAGGCTCAACTCACC
*
6162378 TCTCGCAATATGAGTTGATTTTTTTG
61 TCTCGCAATATGAGCTGATTTTTTTG
6162404 AAAGACAGAAATTGAAAA
1 AAA-ACAGAAATTGAAAA
6162422 TAGCTCAGCG
Statistics
Matches: 697, Mismatches: 113, Indels: 135
0.74 0.12 0.14
Matches are distributed among these distances:
71 7 0.01
72 2 0.00
73 5 0.01
75 37 0.05
76 31 0.04
77 2 0.00
78 6 0.01
79 23 0.03
80 9 0.01
81 52 0.07
82 20 0.03
83 3 0.00
84 1 0.00
85 5 0.01
86 9 0.01
87 181 0.26
88 1 0.00
89 52 0.07
90 23 0.03
91 85 0.12
92 64 0.09
93 78 0.11
94 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (86 bp):
AAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTGTGAGGCTCAACTCACCTCTCG
CAATATGAGCTGATTTTTTTG
Found at i:6162045 original size:75 final size:73
Alignment explanation
Indices: 6161923--6162063 Score: 210
Period size: 75 Copynumber: 1.9 Consensus size: 73
6161913 AAATTGAAGA
* *
6161923 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAATTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
6161988 TTTTAAAG
66 TTTTAAAG
* * * *
6161996 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
6162061 TTT
64 TTT
6162064 GAAACTTAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 41 0.68
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTTAAAG
Found at i:6162297 original size:76 final size:77
Alignment explanation
Indices: 6162106--6162330 Score: 242
Period size: 76 Copynumber: 2.9 Consensus size: 77
6162096 ACCTCGATAT
* * *
6162106 GTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTG---
* *
6162169 AAAAAAATACCTCAGTGT
63 ---AAAATACCTCAGCGC
* *
6162187 GTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
*
6162251 ATAGCTCAGCGC
66 ATACCTCAGCGC
* * *
6162263 GTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTG
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAGACAGAAATTG
6162327 AAAA
63 AAAA
6162331 ACGGAAATTG
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
75 2 0.02
76 45 0.36
79 24 0.19
81 34 0.27
82 21 0.17
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (77 bp):
GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
ATACCTCAGCGC
Found at i:6162390 original size:93 final size:91
Alignment explanation
Indices: 6162231--6162421 Score: 242
Period size: 93 Copynumber: 2.1 Consensus size: 91
6162221 AGTTGATTTT
* * *
6162231 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
6162296 GAGTCGATTTTTTTTTGAAAGGCAGAAA
66 GAGTCGATTTTTTTTTGAAA--CAGAAA
* * * * **
6162324 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
6162389 GAGTTGA--TTTTTTTGAAAGACAGAAA
66 GAGTCGATTTTTTTTTG-AA-ACAGAAA
6162415 TTGAAAA
1 TTGAAAA
6162422 TAGCTCAGCG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
91 21 0.24
92 2 0.02
93 63 0.73
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (91 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTTTTTGAAACAGAAA
Found at i:6162451 original size:77 final size:77
Alignment explanation
Indices: 6162324--6162479 Score: 222
Period size: 77 Copynumber: 2.0 Consensus size: 77
6162314 AAGGCAGAAA
* * * * **
6162324 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
6162389 GAGTTGATTTTT
66 GAGTCGATTTTT
* * *
6162401 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
6162466 GAGTCGATTTTT
66 GAGTCGATTTTT
6162478 TT
1 TT
6162480 TTTAAAGGCA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (77 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTT
Found at i:6162454 original size:170 final size:167
Alignment explanation
Indices: 6162172--6162821 Score: 901
Period size: 170 Copynumber: 3.8 Consensus size: 167
6162162 ATTGAAAAAA
* * * * *
6162172 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
6162236 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGTAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
* *
6162300 CGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 CGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGAAAATTG
* *
6162341 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
6162406 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTTAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
*
6162470 CGATTTTTTTTTTAAAGGCAAAAATTGAAAAACGAAAATTG
127 CGATTTTTTTTTGAAAGGCAAAAATTGAAAAACGAAAATTG
* *
6162511 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTTG
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--TTTTTTTG
* * * * *
6162576 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
64 AAAACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCG
6162641 ATTTTTTTTTTTTGAAAGGCAAAAATTTGAAAAACGAAAATTG
129 A---TTTTTTTTTGAAAGGCAAAAA-TTGAAAAACGAAAATTG
* * *
6162684 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* * * *
6162749 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
6162814 TTTTTTTT
131 TTTTTTTT
6162822 AAAATACCTC
Statistics
Matches: 449, Mismatches: 24, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
168 11 0.02
169 87 0.19
170 160 0.36
171 91 0.20
172 30 0.07
173 70 0.16
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (167 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
TTTTTTTTGAAAGGCAAAAATTGAAAAACGAAAATTG
Found at i:6162652 original size:78 final size:77
Alignment explanation
Indices: 6162505--6162650 Score: 231
Period size: 76 Copynumber: 1.9 Consensus size: 77
6162495 TGAAAAACGA
* *
6162505 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
6162570 TTTTTGACAACAG
65 TTTTTGACAACAG
* * *
6162583 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
6162647 TTTT
66 TTTT
6162651 TTTGAAAGGC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 42 0.67
78 21 0.33
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
TTTTGACAACAG
Found at i:6162801 original size:74 final size:72
Alignment explanation
Indices: 6162677--6162954 Score: 256
Period size: 62 Copynumber: 3.9 Consensus size: 72
6162667 TTGAAAAACG
* * *
6162677 AAAATTGAAAATACCTC-GACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATT
1 AAAATTGAAAATACCTCAG-CGTGT--CCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
6162741 TTTTTGACAAC
63 TTTTT-ACAAC
* *
6162752 AGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
1 A-AAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
6162817 TTT-----
65 TTTACAAC
* * * *
6162820 ----TT-AAAATACCTCAGCGCGTCATAAGGCTCAACTCACCTCTCACAATATGAATTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
6162880 GAAACATAC
66 -TTACA-AC
* * * *
6162889 GAAAAATTGACAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAATTGAATT
1 --AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
6162953 TT
64 TT
6162955 GAAATAAAAC
Statistics
Matches: 168, Mismatches: 19, Indels: 32
0.77 0.09 0.15
Matches are distributed among these distances:
62 52 0.31
63 2 0.01
74 39 0.23
75 38 0.23
76 36 0.21
77 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (72 bp):
AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTACAAC
Found at i:6162821 original size:76 final size:75
Alignment explanation
Indices: 6162678--6162819 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 75
6162668 TGAAAAACGA
* * *
6162678 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCGACGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
6162743 TTTGACAACAG
65 TTTGACAACAG
* *
6162754 AAATTGAAATTACCTC-AGCGTGT-CCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
1 AAATTGAAAATACCTCGA-CGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
6162817 TTT
65 TTT
6162820 TTAAAATACC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
74 39 0.65
75 1 0.02
76 20 0.33
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (75 bp):
AAATTGAAAATACCTCGACGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTT
TTGACAACAG
Found at i:6166625 original size:16 final size:16
Alignment explanation
Indices: 6166604--6166639 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
6166594 ATTATACCCG
6166604 AGAATCCATCCATGAA
1 AGAATCCATCCATGAA
6166620 AGAATCCATCCATGAA
1 AGAATCCATCCATGAA
6166636 AGAA
1 AGAA
6166640 AATAATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.22, G:0.14, T:0.17
Consensus pattern (16 bp):
AGAATCCATCCATGAA
Found at i:6175260 original size:21 final size:20
Alignment explanation
Indices: 6175236--6175341 Score: 50
Period size: 21 Copynumber: 4.8 Consensus size: 20
6175226 ACATATATAT
*
6175236 ATATAAATGATGATATTAGAA
1 ATATAAAT-ATAATATTAGAA
*
6175257 ATATGCAATATAATATTAGAA
1 ATAT-AAATATAATATTAGAA
* * *
6175278 GTATACATGTAATAGTATATAAGAA
1 ATATA-A-AT-ATA--ATATTAGAA
* *
6175303 ATATAACTAATAATATTAAAA
1 ATATAAAT-ATAATATTAGAA
6175324 ATGTATAAAATATAATAT
1 A--TAT-AAATATAATAT
6175342 AAAAAAACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
21 27 0.42
22 4 0.06
23 18 0.28
24 4 0.06
25 12 0.18
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (20 bp):
ATATAAATATAATATTAGAA
Found at i:6179079 original size:4 final size:4
Alignment explanation
Indices: 6179070--6179096 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6179060 ATATTGTAAT
6179070 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
6179097 TTCTCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6180996 original size:13 final size:14
Alignment explanation
Indices: 6180975--6181008 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
6180965 CAAAAAAATC
6180975 TATTTTTTTAATGT
1 TATTTTTTTAATGT
6180989 TATTTTTTTAATGT
1 TATTTTTTTAATGT
6181003 TATTTT
1 TATTTT
6181009 CTTGTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (14 bp):
TATTTTTTTAATGT
Found at i:6181135 original size:30 final size:30
Alignment explanation
Indices: 6181101--6181163 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
6181091 ACTTATTTTA
6181101 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGTAT
*
6181131 TTGTTAATTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGTAT
6181161 TTG
1 TTG
6181164 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGTAT
Found at i:6183217 original size:25 final size:25
Alignment explanation
Indices: 6183183--6183232 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6183173 ACAAATATGT
6183183 AAGAACCATAAAATTTTCATAACTC
1 AAGAACCATAAAATTTTCATAACTC
6183208 AAGAACCATAAAATTTTCATAACTC
1 AAGAACCATAAAATTTTCATAACTC
6183233 TTCGATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.20, G:0.04, T:0.28
Consensus pattern (25 bp):
AAGAACCATAAAATTTTCATAACTC
Found at i:6184682 original size:23 final size:23
Alignment explanation
Indices: 6184656--6184714 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
6184646 CAATAAATAA
6184656 AAAATAAAAAATTATTAAATATT
1 AAAATAAAAAATTATTAAATATT
*
6184679 AAAATAATATAA-TA-TAAATATT
1 AAAATAA-AAAATTATTAAATATT
*
6184701 TAAA-AAAAAATTAT
1 AAAATAAAAAATTAT
6184715 ATGGGTTGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
22 11 0.37
23 9 0.30
24 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
AAAATAAAAAATTATTAAATATT
Found at i:6184716 original size:23 final size:22
Alignment explanation
Indices: 6184661--6184716 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
6184651 AATAAAAAAT
6184661 AAAAAATTAT-TAAATATTAAA
1 AAAAAATTATATAAATATTAAA
* * *
6184682 ATAATATAATATAAATATTTAAA
1 AAAAAATTATATAAATA-TTAAA
6184705 AAAAAATTATAT
1 AAAAAATTATAT
6184717 GGGTTGGCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 7 0.26
22 6 0.22
23 14 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAAATTATATAAATATTAAA
Found at i:6194090 original size:14 final size:14
Alignment explanation
Indices: 6194073--6194099 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6194063 CATAGCTTCA
6194073 ACAACCTAGCCTCT
1 ACAACCTAGCCTCT
6194087 ACAACCTAGCCTC
1 ACAACCTAGCCTC
6194100 ATCCTCTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.44, G:0.07, T:0.19
Consensus pattern (14 bp):
ACAACCTAGCCTCT
Found at i:6195841 original size:21 final size:21
Alignment explanation
Indices: 6195815--6195855 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
6195805 ACCCACAATT
6195815 AGAAAAATTTAATTAAAACTA
1 AGAAAAATTTAATTAAAACTA
6195836 AGAAAAATTTAATTAAAACT
1 AGAAAAATTTAATTAAAACT
6195856 GAATTAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
AGAAAAATTTAATTAAAACTA
Found at i:6196823 original size:29 final size:28
Alignment explanation
Indices: 6196791--6196867 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 28
6196781 TTTAAATTTG
*
6196791 AATTTTAAAATTTAAAAAATA-AATTCTTA
1 AATTTTAAAATTTAAAAAATATAA--ATTA
*
6196820 AATTTTTAAAA-ATAAAAACATATAAATTA
1 AA-TTTTAAAATTTAAAAA-ATATAAATTA
6196849 AATTTT-AAATTTACAAAAA
1 AATTTTAAAATTTA-AAAAA
6196868 CTAGAAAGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
27 3 0.08
28 7 0.17
29 17 0.43
30 11 0.28
31 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (28 bp):
AATTTTAAAATTTAAAAAATATAAATTA
Found at i:6196830 original size:22 final size:21
Alignment explanation
Indices: 6196791--6196835 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
6196781 TTTAAATTTG
6196791 AATTTTAAAATTTAAAAAATA
1 AATTTTAAAATTTAAAAAATA
* *
6196812 AATTCTTAAATTTTTAAAAATA
1 AATT-TTAAAATTTAAAAAATA
6196834 AA
1 AA
6196836 AACATATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTTTAAAATTTAAAAAATA
Found at i:6199014 original size:30 final size:30
Alignment explanation
Indices: 6198980--6199044 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
6198970 TCACTTTTTG
* *
6198980 ATTCTCAATTTTTTTTATTCTAAATTGTCA
1 ATTCTCAATTTTTTTTATTCAAAATTCTCA
**
6199010 ATTCTTGATTTTTTTTATTCAAAATTCTCA
1 ATTCTCAATTTTTTTTATTCAAAATTCTCA
6199040 ATTCT
1 ATTCT
6199045 TAAAGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTCTCAATTTTTTTTATTCAAAATTCTCA
Found at i:6199045 original size:30 final size:30
Alignment explanation
Indices: 6198987--6199045 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
6198977 TTGATTCTCA
* *
6198987 ATTTTTTTTATTCTAAATTGTCAATTCTTG
1 ATTTTTTTTATTCAAAATTCTCAATTCTTG
6199017 ATTTTTTTTATTCAAAATTCTCAATTCTT
1 ATTTTTTTTATTCAAAATTCTCAATTCTT
6199046 AAAGTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.12, G:0.03, T:0.59
Consensus pattern (30 bp):
ATTTTTTTTATTCAAAATTCTCAATTCTTG
Found at i:6199054 original size:30 final size:30
Alignment explanation
Indices: 6198990--6199056 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
6198980 ATTCTCAATT
* * * **
6198990 TTTTTTATTCTAAATTGTCAATTCTTGATT
1 TTTTTTATTCAAAATTCTCAATTCTTAAAG
6199020 TTTTTTATTCAAAATTCTCAATTCTTAAAG
1 TTTTTTATTCAAAATTCTCAATTCTTAAAG
6199050 TTTTTTA
1 TTTTTTA
6199057 AAAATTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.04, T:0.58
Consensus pattern (30 bp):
TTTTTTATTCAAAATTCTCAATTCTTAAAG
Found at i:6199315 original size:24 final size:24
Alignment explanation
Indices: 6199283--6199332 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
6199273 CACCTTCATC
6199283 CTTTTTGACGAAGTTAGCATATAA
1 CTTTTTGACGAAGTTAGCATATAA
6199307 CTTTTTGACGAAGTTAGCATATAA
1 CTTTTTGACGAAGTTAGCATATAA
6199331 CT
1 CT
6199333 CTAGTACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (24 bp):
CTTTTTGACGAAGTTAGCATATAA
Found at i:6204597 original size:132 final size:132
Alignment explanation
Indices: 6204180--6204701 Score: 500
Period size: 132 Copynumber: 4.0 Consensus size: 132
6204170 TAGAAAATAC
* * * * * *
6204180 GAGTGAAATTCCGAAGAGATATTCGATTGTTTTGAACAAACGAGAGATTGCAACCCAGCGCGATA
1 GAGTGAAATT-TGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGATA
** * * **
6204245 GGGCACGATT-CTTGAATTGCCAAACATCGAAC-ATAGCCTTTGTTTTAAAGGGTTTTCTTAAAA
65 GGGCACGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAA-GAATTT-TTAAAA
6204308 GACAT
128 GACAT
** * * * ** **
6204313 GAGTGAAAACCTAAAAGAATATTCGATCGTTTTGAACAAACGAGAAATCACAACCCAACACGATA
1 GAGTG-AAATTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGATA
* * * * * *
6204378 GGGCATGATTCC-CGAATTGTCAAACACCG-AGTATTGCCTTCGTTTTAGAGGATTTTTAAAAGA
65 GGGCACGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGAATTTTTAAAAGA
*
6204441 CCT
130 CAT
* * * * * *
6204444 GAATGGAATCTAGAAGGGATATTTGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
1 GAGTGAAAT-TTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGATA
* * * *
6204509 GGGTACGATTCCGCGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGG
65 GGGCACGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGAATTTTTAAAAGA
6204573 CAT
130 CAT
** ** *
6204576 GAGTGAAAGTTTGAAGGGATATTCGATTATTCCGAGTAAACGCGAAATTGCAACCCAACAC-ATT
1 GAGTGAAA-TTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGA-T
* * * * *
6204640 AGGGCACTATTCCGCGAATTGCCAAATATCGAA-TCTCGTCTTCGTTTTAAAGAATTTTTAAA
64 AGGGCACGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGAATTTTTAAA
6204702 TGTATAATCA
Statistics
Matches: 315, Mismatches: 65, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
130 2 0.01
131 68 0.22
132 153 0.49
133 88 0.28
134 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (132 bp):
GAGTGAAATTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGATAG
GGCACGATTCCGCGAATTGCCAAACATCGAACTATTGCCTTCGTTTTAAAGAATTTTTAAAAGAC
AT
Found at i:6204686 original size:264 final size:264
Alignment explanation
Indices: 6204192--6204701 Score: 569
Period size: 264 Copynumber: 1.9 Consensus size: 264
6204182 GTGAAATTCC
* * * * * *
6204192 GAAGAGATATTCGATTGTTTTGAACAAACGAGAGATTGCAACCCAGCGCGATAGGGCACGATTCT
1 GAAGAGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGATAGGGCACGATTCG
* * * **
6204257 TGAATTGCCAAACATCGAACATAGCCTTTGTTTTAAAGGGTTTTCTTAAAAGACATGAGTGAAAA
66 CGAATTGCCAAACATCAAACATAGCCTTCGTTTTAAAGGAATTTCTTAAAAGACATGAGTGAAAA
* **
6204322 CCTAAAAGAATATTCGATCGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGAT
131 CCTAAAAGAATATTCGATCATTCCGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGAT
* * * * *
6204387 TCCCGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAGAGGATTTTTAAAAGACCTGAATGGAA
196 TCCCGAATTGCCAAACACCGAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAATGGAA
6204452 TCTA
261 TCTA
* * * *
6204456 GAAGGGATATTTGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTAGGGTACGATTCC
1 GAAGAGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGATAGGGCACGATT-C
* * * *
6204521 GCGAATTGCCAAATATCAAACTTTGCCTTCGTTTTAAA-GAATTT-TTAAAAGGCATGAGTGAAA
65 GCGAATTGCCAAACATCAAACATAGCCTTCGTTTTAAAGGAATTTCTTAAAAGACATGAGTGAAA
*** * * * * ** * **
6204584 GTTTGAAGGGATATTCGATTATTCCGAGTAAACGCGAAATTGCAACCCAACAC-ATTAGGGCACT
130 ACCTAAAAGAATATTCGATCATTCCGAACAAACGAGAAATCACAACCCAACACGA-TAGGGCA-T
* * * *
6204648 -ATTCCGCGAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTTAAA
193 GATTCC-CGAATTGCCAAACACCGAATATCGCCTTCGTTTTAAAGAATTTTTAAA
6204702 TGTATAATCA
Statistics
Matches: 199, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
262 1 0.01
263 68 0.34
264 98 0.49
265 32 0.16
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (264 bp):
GAAGAGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGATAGGGCACGATTCG
CGAATTGCCAAACATCAAACATAGCCTTCGTTTTAAAGGAATTTCTTAAAAGACATGAGTGAAAA
CCTAAAAGAATATTCGATCATTCCGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGAT
TCCCGAATTGCCAAACACCGAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAATGGAA
TCTA
Found at i:6205562 original size:23 final size:23
Alignment explanation
Indices: 6205536--6205581 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
6205526 AACCATTTAG
6205536 GAACAAAT-ATACATGAAATATTT
1 GAACAAATGATACAT-AAATATTT
* *
6205559 GAACAAGTGTTACATAAATATTT
1 GAACAAATGATACATAAATATTT
6205582 TAAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (23 bp):
GAACAAATGATACATAAATATTT
Found at i:6205707 original size:7 final size:7
Alignment explanation
Indices: 6205695--6205723 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
6205685 AGTAACAAAT
6205695 ATTACAA
1 ATTACAA
6205702 ATTACAA
1 ATTACAA
6205709 ATTACAA
1 ATTACAA
6205716 ATTACAA
1 ATTACAA
6205723 A
1 A
6205724 CCTTGATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.28
Consensus pattern (7 bp):
ATTACAA
Found at i:6207786 original size:44 final size:45
Alignment explanation
Indices: 6207729--6209003 Score: 1032
Period size: 44 Copynumber: 29.0 Consensus size: 45
6207719 AGATTCATCG
* * * *
6207729 TCTTCGATTTGCTCCACTG-TAATACAGAGATGCCAAATCTG-TCA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCT-A
* ** *
6207773 TCTTTGATCTGCT-CTCT-ATCAACGCAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGA-CAATACAGAGACGCCAAATCTGCTA
6207817 TCTTCGATCTG-TCCTCTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * *
6207861 TCTTCAATTTGC-CTTTTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
*
6207905 TCTTCGATCTGC-CCTCTGACAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* *
6207949 TCTTCGATCTGCT-CTCCGCCAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * * * *
6207993 TCCTCGATTTGCT-CTCAGCCAACACAAAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* *
6208037 TTTTCGATCTGC-CCTCTGACAATACAGAGACGCCAAATCTACTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * *
6208081 TCTTTGATCTGCT-CTCTGCCAATACAGAGACACCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * * *
6208125 TCTTCGATCTGCT-CTCCGCCAACACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * **
6208169 TCTTCGATCTGCT-TTCTGTCGCTACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * * ** * ** * *
6208213 TCTTTGATCTACT-TTCTGCCTCTATAGAGACGCTGAATTTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * ** * *
6208257 TCTTCTATCTGCT-CTCCGCCGCTACAGAGACGCAAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
*
6208301 TCTTCGATCTGC-CATCTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * ** * *
6208345 TCTTCGATCTGCT-CTCCGCCGTTATAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * ** * *
6208389 TCTTCGATCTGCT-CTCCGCCGCTACAGAGATGCTAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * ** * *
6208433 TCTTTGATCTGCTCTTC-GCCGCTACAGAGAAGCCAAATTTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* ** * *
6208477 TCTTCAATCTGCT-CTCT-ACCGCTATAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGA-CAATACAGAGACGCCAAATCTGCTA
* * * ** * *
6208521 TCTTCGATTTGCTCTTC-GCCGCTATAGAGACGCTAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * ** *
6208565 TCTTTGATCTGCT-CTCCGCCGCTACAGAGACGTCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * * * *
6208609 TCTTCGATCTACT-CTTTGCCACTACAGAGACACCAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * ** * *
6208653 TCTTTGATCTGCT-CTCAGCCGCTATAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * *
6208697 TCTTCGATCTGCT-CTCCGA-AGCTACAGAGACGCCAAATCCGCTA
1 TCTTCGATCTGCTCCTCTGACA-ATACAGAGACGCCAAATCTGCTA
* * * ** * * *
6208741 TCTTCGACCTGCT-CTCCGCCGCTATATAGACGCAAAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGC-CAAATCTGCTA
* * * * *
6208786 TTTTCGATCTGCT-CTCCGCCGATACAAAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * *
6208830 TCTTCGATCTGCT-CTCTGTCAATACAGAGACGTCAAATCCGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * * *
6208874 GCTTTGATCTGCT-CTCCGCCAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
** * * *
6208918 TCTTTAATCTGCT-CTCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
** * * * *
6208962 TCTTTAATCTGCT-CTCTGTCAACACAGAGATGTCAAATCTGC
1 TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGC
6209004 AGGATTCGTC
Statistics
Matches: 1038, Mismatches: 173, Indels: 40
0.83 0.14 0.03
Matches are distributed among these distances:
43 8 0.01
44 987 0.95
45 43 0.04
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTGCTCCTCTGACAATACAGAGACGCCAAATCTGCTA
Found at i:6207972 original size:132 final size:132
Alignment explanation
Indices: 6207749--6209003 Score: 1300
Period size: 132 Copynumber: 9.5 Consensus size: 132
6207739 GCTCCACTGT
* * ** *
6207749 AATACAGAGATGCCAAATCTG-TCATCTTTGATCTGCTCTCT-ATCAACGCAGAGATGCCAAATC
1 AATACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATC
* * *
6207812 TGCTATCTTCGATCTG-TCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCAATTTGC-CT
64 TGCTATCTTCGATCTGCT-CTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTC-
** *
6207875 TTTGAC
127 TCCGCC
* *
6207881 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTG
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
* * * *
6207946 CTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCCTCGATTTGCTCTCAG
66 CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
6208011 CC
131 CC
* * * * *
6208013 AACACAAAGACGCCAAATCTGCTATTTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTA
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
* *
6208078 CTATCTTTGATCTGCTCTCTGCCAATACAGAGACACCAAATCTGCTATCTTCGATCTGCTCTCCG
66 CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
6208143 CC
131 CC
* * * * * **
6208145 AACACAGAGATGCCAAATCTGTTATCTTCGATCTGCTTTCTGTCGCTACAGAGACGCCAAATCTG
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
* * * ** * ** * * *
6208210 CTATCTTTGATCTACTTTCTGCCTCTATAGAGACGCTGAATTTGTTATCTTCTATCTGCTCTCCG
66 CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
6208275 CC
131 CC
** * *
6208277 GCTACAGAGACGCAAAATCTGTTATCTTCGATCTGC-CATCTGACAATACAGAGACGCCAAATCT
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTC-TCTGACAATACAGAGACGCCAAATCT
* ** * *
6208341 GCTATCTTCGATCTGCTCTCCGCCGTTATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCC
65 GCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCC
6208406 GCC
130 GCC
** * * * * ** * *
6208409 GCTACAGAGATGCTAAATCTGCTATCTTTGATCTGCTCT-TCGCCGCTACAGAGAAGCCAAATTT
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCT-GACAATACAGAGACGCCAAATCT
* * ** * * * *
6208473 GCTATCTTCAATCTGCTCTCTACCGCTATAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTTC
65 GCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCC
6208538 GCC
130 GCC
** * * * * * ** *
6208541 GCTATAGAGACGCTAAATCTGCTATCTTTGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTG
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
* * * * * * *
6208606 CTATCTTCGATCTACTCTTTGCCACTACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCAG
66 CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
6208671 CC
131 CC
** * * * * *
6208673 GCTATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGA-AGCTACAGAGACGCCAAATCC
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA-ATACAGAGACGCCAAATCT
* * ** * * * *
6208737 GCTATCTTCGACCTGCTCTCCGCCGCTATATAGACGCAAAAATCTGCTATTTTCGATCTGCTCTC
65 GCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGC-CAAATCTGCTATCTTCGATCTGCTCTC
6208802 CGCC
129 CGCC
* * * * *
6208806 GATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGTCAAATCCG
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
* * * ** *
6208871 CTAGCTTTGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTTAATCTGCTCTCTG
66 CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
*
6208936 TC
131 CC
* * ** * * * *
6208938 AACACAGAGATGCCAAATCTGCTATCTTTAATCTGCTCTCTGTCAACACAGAGATGTCAAATCTG
1 AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
6209003 C
66 C
6209004 AGGATTCGTC
Statistics
Matches: 967, Mismatches: 145, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
131 1 0.00
132 850 0.88
133 115 0.12
134 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (132 bp):
AATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG
CTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
CC
Found at i:6211793 original size:20 final size:21
Alignment explanation
Indices: 6211760--6211800 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
6211750 AACTTATCAA
6211760 TTCAAATATTATAATAAAAATT
1 TTCAAATA-TATAATAAAAATT
*
6211782 TTCAAATA-ATAATTAAAAT
1 TTCAAATATATAATAAAAAT
6211801 GTTTTATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
22 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
TTCAAATATATAATAAAAATT
Found at i:6212274 original size:10 final size:11
Alignment explanation
Indices: 6212249--6212310 Score: 62
Period size: 10 Copynumber: 6.1 Consensus size: 11
6212239 TAATTTTAAG
*
6212249 ATTTAT-TTTC
1 ATTTATCTTTT
6212259 ATTTATCTTTT
1 ATTTATCTTTT
6212270 A-TTATC-TTT
1 ATTTATCTTTT
*
6212279 AATTATC-TTT
1 ATTTATCTTTT
*
6212289 ATTTAT-TTGT
1 ATTTATCTTTT
6212299 ATTTATCTTTT
1 ATTTATCTTTT
6212310 A
1 A
6212311 GAATTTAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 4 0.09
10 32 0.73
11 8 0.18
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.68
Consensus pattern (11 bp):
ATTTATCTTTT
Found at i:6212293 original size:30 final size:30
Alignment explanation
Indices: 6212251--6212308 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
6212241 ATTTTAAGAT
*
6212251 TTATTTTCATTTATCTTTTA-TTATCTTTAA
1 TTATTTTCATTTAT-TTGTATTTATCTTTAA
6212281 TTATCTTT-ATTTATTTGTATTTATCTTT
1 TTAT-TTTCATTTATTTGTATTTATCTTT
6212309 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 4 0.16
30 18 0.72
31 3 0.12
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.69
Consensus pattern (30 bp):
TTATTTTCATTTATTTGTATTTATCTTTAA
Found at i:6216031 original size:10 final size:10
Alignment explanation
Indices: 6216025--6216113 Score: 66
Period size: 10 Copynumber: 9.3 Consensus size: 10
6216015 TTTTTATTAT
6216025 TTATTATTTA
1 TTATTATTTA
6216035 TTA-T-TTTA
1 TTATTATTTA
6216043 TT-TTATTTTA
1 TTATTA-TTTA
*
6216053 TTAGTATTTA
1 TTATTATTTA
6216063 TTA-T-TTTA
1 TTATTATTTA
*
6216071 TT-TCATTTTA
1 TTATTA-TTTA
*
6216081 TTAGTATTTA
1 TTATTATTTA
*
6216091 TTATT-TTATT
1 TTATTATT-TA
6216101 TTATTATTTA
1 TTATTATTTA
6216111 TTA
1 TTA
6216114 CTTTATTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
8 13 0.21
9 4 0.06
10 40 0.65
11 5 0.08
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.71
Consensus pattern (10 bp):
TTATTATTTA
Found at i:6216045 original size:5 final size:5
Alignment explanation
Indices: 6216035--6216105 Score: 61
Period size: 5 Copynumber: 13.0 Consensus size: 5
6216025 TTATTATTTA
* *
6216035 TTATT TTATT TTATT TTATT AGTATTT ATTATT TTATT TCATT TTATT
1 TTATT TTATT TTATT TTATT -TTA-TT -TTATT TTATT TTATT TTATT
*
6216083 AGTATTT ATTATT TTATT TTATT
1 -TTA-TT -TTATT TTATT TTATT
6216106 ATTTATTACT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
5 38 0.68
6 8 0.14
7 10 0.18
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (5 bp):
TTATT
Found at i:6216060 original size:28 final size:28
Alignment explanation
Indices: 6216016--6216105 Score: 146
Period size: 28 Copynumber: 3.2 Consensus size: 28
6216006 TTTTCTTAAT
* *
6216016 TTTTATTAT-TTATTATTTATTATTTTA
1 TTTTATTTTATTAGTATTTATTATTTTA
6216043 TTTTATTTTATTAGTATTTATTATTTTA
1 TTTTATTTTATTAGTATTTATTATTTTA
*
6216071 TTTCATTTTATTAGTATTTATTATTTTA
1 TTTTATTTTATTAGTATTTATTATTTTA
6216099 TTTTATT
1 TTTTATT
6216106 ATTTATTACT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 8 0.14
28 50 0.86
ACGTcount: A:0.24, C:0.01, G:0.02, T:0.72
Consensus pattern (28 bp):
TTTTATTTTATTAGTATTTATTATTTTA
Found at i:6216118 original size:28 final size:28
Alignment explanation
Indices: 6216016--6216120 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
6216006 TTTTCTTAAT
*
6216016 TTTTATTAT-TTATTATTTATTATTTTA
1 TTTTATTATATTAGTATTTATTATTTTA
*
6216043 TTTTATTTTATTAGTATTTATTATTTTA
1 TTTTATTATATTAGTATTTATTATTTTA
* *
6216071 TTTCATTTTATTAGTATTTATTATTTTA
1 TTTTATTATATTAGTATTTATTATTTTA
*
6216099 TTTTATTAT-TTATTACTTTATT
1 TTTTATTATATTAGTA-TTTATT
6216121 TTTAGATATT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
27 13 0.19
28 57 0.81
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (28 bp):
TTTTATTATATTAGTATTTATTATTTTA
Found at i:6217389 original size:96 final size:96
Alignment explanation
Indices: 6217211--6217393 Score: 226
Period size: 95 Copynumber: 1.9 Consensus size: 96
6217201 TTTTTAAGAA
* * * ** *
6217211 TATGTTGGGCTGAGTAACGAGGGTGAGGTGCTTGGTTGTCATCTCTTTTCATGTCAAAAGGTTCG
1 TATGTTGGGCTGAGTAACGAGGGTGAGGTGCTTGGCTGTCACCTCTGTTCACATCAAAAGGTTCA
* *
6217276 ATATGTTCTTAAGAAAAATAAAAATTAGGAG
66 ATATATTCCTAAGAAAAATAAAAATTAGGAG
* * *
6217307 TATGTTGGGCTGAGTAAC-CGGGT-AGGGTGCTTGGCTGTCACCTCTGTTCGCATCAAAATGTTC
1 TATGTTGGGCTGAGTAACGAGGGTGA-GGTGCTTGGCTGTCACCTCTGTTCACATCAAAAGGTTC
*
6217370 AATATATTCCTAATTAAAAATAAA
65 AATATATTCCTAA-GAAAAATAAA
6217394 TAAATTAAGT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 45 0.62
96 27 0.37
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (96 bp):
TATGTTGGGCTGAGTAACGAGGGTGAGGTGCTTGGCTGTCACCTCTGTTCACATCAAAAGGTTCA
ATATATTCCTAAGAAAAATAAAAATTAGGAG
Found at i:6218062 original size:10 final size:10
Alignment explanation
Indices: 6218047--6218096 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
6218037 TAATTTTAGG
6218047 ATTTAT-TTT
1 ATTTATCTTT
6218056 CATTTATCTTT
1 -ATTTATCTTT
6218067 -TATTATCTTT
1 AT-TTATCTTT
6218077 ATTTAT-TTGT
1 ATTTATCTT-T
6218087 ATTTATCTTT
1 ATTTATCTTT
6218097 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
9 3 0.09
10 26 0.74
11 6 0.17
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:6218080 original size:20 final size:20
Alignment explanation
Indices: 6218047--6218096 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
6218037 TAATTTTAGG
*
6218047 ATTTAT-TTTCATTTATCTTTT
1 ATTTATCTTT-ATTTAT-TTGT
6218068 A-TTATCTTTATTTATTTGT
1 ATTTATCTTTATTTATTTGT
6218087 ATTTATCTTT
1 ATTTATCTTT
6218097 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 18 0.69
21 4 0.15
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTATCTTTATTTATTTGT
Found at i:6223067 original size:16 final size:17
Alignment explanation
Indices: 6223046--6223078 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6223036 CACATTGAAG
6223046 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
6223062 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
6223079 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:6225511 original size:29 final size:29
Alignment explanation
Indices: 6225450--6225504 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
6225440 AGAGGAAAAA
* *
6225450 AGAAAAAGAAAAGGAGAAAGTAGATGGAG
1 AGAAAAAGAAAAGGAGAAAGAAGAAGGAG
6225479 AGAAAAAGAAAA-GA-AAAGAAGAAGGA
1 AGAAAAAGAAAAGGAGAAAGAAGAAGGA
6225505 AAGAGAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.42
28 2 0.08
29 12 0.50
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (29 bp):
AGAAAAAGAAAAGGAGAAAGAAGAAGGAG
Found at i:6226768 original size:19 final size:18
Alignment explanation
Indices: 6226731--6226774 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
6226721 ATACATGCAG
6226731 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
6226748 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
6226767 TACTAATT
1 TAATAATT
6226775 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:6228641 original size:16 final size:17
Alignment explanation
Indices: 6228612--6228653 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
6228602 TTAATATAAA
*
6228612 AATTAACATTATTAAAAT
1 AATTAAC-TAATTAAAAT
*
6228630 AA-TAACTAATTAACAT
1 AATTAACTAATTAAAAT
6228646 AATTAACT
1 AATTAACT
6228654 CTAATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 10 0.48
17 9 0.43
18 2 0.10
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
AATTAACTAATTAAAAT
Found at i:6228650 original size:9 final size:9
Alignment explanation
Indices: 6228612--6228652 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
6228602 TTAATATAAA
6228612 AATTAACAT
1 AATTAACAT
* *
6228621 TATTAAAAT
1 AATTAACAT
6228630 AA-TAAC-T
1 AATTAACAT
6228637 AATTAACAT
1 AATTAACAT
6228646 AATTAAC
1 AATTAAC
6228653 TCTAATATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
7 3 0.12
8 7 0.27
9 16 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (9 bp):
AATTAACAT
Found at i:6228920 original size:36 final size:36
Alignment explanation
Indices: 6228880--6229046 Score: 110
Period size: 36 Copynumber: 4.5 Consensus size: 36
6228870 AATCAATATG
6228880 TATTTTTTAATTAATAATTAT-AATTATAATTTTATT
1 TATTTTTTAATTAATAATTATCAATT-TAATTTTATT
* * * * *
6228916 TATTTTTAAATGT-ACAATTATCACTTCAATTATATT
1 TATTTTTTAAT-TAATAATTATCAATTTAATTTTATT
* * * *
6228952 ACAACTTTTTAATTAACAATTAT-AATTTAAATTCTATT
1 --TATTTTTTAATTAATAATTATCAATTT-AATTTTATT
* *
6228990 TATTTTTAAATGT-ATAATTATCACTTCT-ATTTTATT
1 TATTTTTTAAT-TAATAATTATCAATT-TAATTTTATT
*
6229026 TCAACTTTTTAATTAATAATT
1 T--ATTTTTTAATTAATAATT
6229047 CTAAATTAAT
Statistics
Matches: 100, Mismatches: 19, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
36 48 0.48
37 13 0.13
38 39 0.39
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (36 bp):
TATTTTTTAATTAATAATTATCAATTTAATTTTATT
Found at i:6228961 original size:74 final size:73
Alignment explanation
Indices: 6228883--6229083 Score: 269
Period size: 74 Copynumber: 2.7 Consensus size: 73
6228873 CAATATGTAT
*
6228883 TTTTTAATTAATAATTATAATTATAATTTTATTTATTTTTAAATGTACAATTATCACTTCAATTA
1 TTTTTAATTAATAATTATAATTATAATTATATTTATTTTTAAATGTA-AATTATCACTTCAATTA
6228948 TATTACAAC
65 TATTACAAC
* * *
6228957 TTTTTAATTAACAATTATAATT-TAAATTCTATTTATTTTTAAATGTATAATTATCACTTCTATT
1 TTTTTAATTAATAATTATAATTAT-AATTATATTTATTTTTAAATGTA-AATTATCACTTCAATT
* *
6229021 TTATTTCAAC
64 ATATTACAAC
* * *
6229031 TTTTTAATTAATAATTCTAAATTAATCATTATAATTATTTTTAAATGTAAATT
1 TTTTTAATTAATAATTAT-AATT-ATAATTATATTTATTTTTAAATGTAAATT
6229084 TAATAATATG
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
73 1 0.01
74 82 0.73
75 8 0.07
76 20 0.18
77 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.53
Consensus pattern (73 bp):
TTTTTAATTAATAATTATAATTATAATTATATTTATTTTTAAATGTAAATTATCACTTCAATTAT
ATTACAAC
Found at i:6228973 original size:38 final size:37
Alignment explanation
Indices: 6228929--6229046 Score: 98
Period size: 38 Copynumber: 3.2 Consensus size: 37
6228919 TTTTAAATGT
6228929 ACAATTATCACTTCAATTATATTACAACTTTTTAATTA
1 ACAATTATCACTTCAATTATATT-CAACTTTTTAATTA
* * * * *
6228967 ACAATTATAATTTAAATTCTATT-TA-TTTTTAAATGT-
1 ACAATTATCACTTCAATTATATTCAACTTTTT-AAT-TA
* * *
6229003 ATAATTATCACTTCTATTTTATTTCAACTTTTTAATTA
1 ACAATTATCACTTCAATTATA-TTCAACTTTTTAATTA
*
6229041 ATAATT
1 ACAATT
6229047 CTAAATTAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
35 5 0.08
36 19 0.31
37 4 0.06
38 29 0.47
39 5 0.08
ACGTcount: A:0.37, C:0.11, G:0.01, T:0.51
Consensus pattern (37 bp):
ACAATTATCACTTCAATTATATTCAACTTTTTAATTA
Found at i:6229276 original size:3 final size:3
Alignment explanation
Indices: 6229268--6229325 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
6229258 CTCTATTTCT
*
6229268 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6229316 ATA ATA ATA A
1 ATA ATA ATA A
6229326 ACAATTAAGC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6230102 original size:15 final size:15
Alignment explanation
Indices: 6230082--6230111 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6230072 CTTCTGAAAT
*
6230082 GTTTAGCTTCTTTCC
1 GTTTAGCCTCTTTCC
6230097 GTTTAGCCTCTTTCC
1 GTTTAGCCTCTTTCC
6230112 TTCTTCGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.30, G:0.13, T:0.50
Consensus pattern (15 bp):
GTTTAGCCTCTTTCC
Found at i:6234714 original size:46 final size:44
Alignment explanation
Indices: 6234655--6234769 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
6234645 ACAGGACAGA
* *
6234655 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
6234701 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
6234745 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
6234770 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:6234750 original size:44 final size:45
Alignment explanation
Indices: 6234655--6234788 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
6234645 ACAGGACAGA
* *
6234655 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
6234701 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
6234745 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
6234789 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:6237845 original size:21 final size:21
Alignment explanation
Indices: 6237792--6237845 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
6237782 ATAATTTATA
*
6237792 TTTCCAATAAAAATTCAAGCT
1 TTTCCTATAAAAATTCAAGCT
* * *
6237813 TTTCCTGT-AAAATTCTAGGT
1 TTTCCTATAAAAATTCAAGCT
*
6237833 TTTTCTATAAAAA
1 TTTCCTATAAAAA
6237846 AACTAAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (21 bp):
TTTCCTATAAAAATTCAAGCT
Found at i:6238907 original size:18 final size:18
Alignment explanation
Indices: 6238868--6238907 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6238858 ACTGTAGGTG
* *
6238868 CTTTGACACTCACAGTTG
1 CTTTGACACTCACAGATC
*
6238886 CTTTGACACTCGCAGATC
1 CTTTGACACTCACAGATC
6238904 CTTT
1 CTTT
6238908 TGGACAAGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (18 bp):
CTTTGACACTCACAGATC
Found at i:6240891 original size:24 final size:24
Alignment explanation
Indices: 6240864--6240915 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
6240854 TCACTCACAA
* *
6240864 TCTTCGGCTTCTTTTTCTT-CTTAT
1 TCTTCGCCTTCTTCTTCTTAC-TAT
*
6240888 TCTTTGCCTTCTTCTTCTTACTAT
1 TCTTCGCCTTCTTCTTCTTACTAT
6240912 TCTT
1 TCTT
6240916 ATTATTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.06, C:0.27, G:0.06, T:0.62
Consensus pattern (24 bp):
TCTTCGCCTTCTTCTTCTTACTAT
Found at i:6241877 original size:2 final size:2
Alignment explanation
Indices: 6241870--6241897 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6241860 TTTATACTTT
6241870 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6241898 AAAGGCTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6243094 original size:42 final size:41
Alignment explanation
Indices: 6243020--6243128 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
6243010 TGACTTAGGA
** ** *
6243020 CCACACGGCCAAGGACATGGGCATGTGCCCAGGCCATGTGAG
1 CCACACGGGAAAGGACATGGGTGTGTGCCCAGG-CAGGTGAG
* *
6243062 GCACACGGGAAAGGACATGGGTGTGTGTCCAGGCAGGTGAG
1 CCACACGGGAAAGGACATGGGTGTGTGCCCAGGCAGGTGAG
*** *
6243103 CCATTTGGGTAAGGACATGGGTGTGT
1 CCACACGGGAAAGGACATGGGTGTGT
6243129 ACCTAGGTCG
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
41 28 0.51
42 27 0.49
ACGTcount: A:0.23, C:0.21, G:0.39, T:0.17
Consensus pattern (41 bp):
CCACACGGGAAAGGACATGGGTGTGTGCCCAGGCAGGTGAG
Found at i:6244311 original size:41 final size:41
Alignment explanation
Indices: 6244266--6244347 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
6244256 AAGGAATAAA
*
6244266 GGGACTTATAATTTTCTTTCTGCGACTATAGGTTTAAATTT
1 GGGACTTATAATTTTCTTTCTGCGAATATAGGTTTAAATTT
* *
6244307 GGGACTTATTATTTTCTTTCTGTGAATATAGGTTTAAATTT
1 GGGACTTATAATTTTCTTTCTGCGAATATAGGTTTAAATTT
6244348 TGCATGTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (41 bp):
GGGACTTATAATTTTCTTTCTGCGAATATAGGTTTAAATTT
Found at i:6244434 original size:2 final size:2
Alignment explanation
Indices: 6244427--6244467 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
6244417 GAATTAAATT
6244427 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6244468 GATTTCACGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6246012 original size:29 final size:27
Alignment explanation
Indices: 6245946--6246000 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
6245936 TAAGAAGAAA
*
6245946 ATAATAAGTAAAAAATAATAATGAATG
1 ATAAAAAGTAAAAAATAATAATGAATG
6245973 ATAAAAA-T-AAAAATAAATAA-GAATG
1 ATAAAAAGTAAAAAAT-AATAATGAATG
6245998 ATA
1 ATA
6246001 GGAACAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 14 0.54
26 6 0.23
27 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (27 bp):
ATAAAAAGTAAAAAATAATAATGAATG
Found at i:6246176 original size:23 final size:21
Alignment explanation
Indices: 6246149--6246217 Score: 79
Period size: 20 Copynumber: 3.2 Consensus size: 21
6246139 TAGTGATGAT
*
6246149 AATAATAATAGTAGTAAAATAA
1 AATAATAATAGTAATAAAA-AA
6246171 AGATAAT-ATAGTAAATAAAAAA
1 A-ATAATAATAGT-AATAAAAAA
6246193 AA-AATAATAGTAATAAAAAA
1 AATAATAATAGTAATAAAAAA
6246213 TAATA
1 -AATA
6246218 GTAGTGATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
20 12 0.29
21 8 0.20
22 10 0.24
23 11 0.27
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (21 bp):
AATAATAATAGTAATAAAAAA
Found at i:6246348 original size:2 final size:2
Alignment explanation
Indices: 6246330--6246377 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
6246320 GTAAATAATA
* *
6246330 AT AT AT AC AT A- AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6246371 AT AT AT A
1 AT AT AT A
6246378 AAATATAATG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:6246649 original size:3 final size:3
Alignment explanation
Indices: 6246641--6246681 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
6246631 GGATATATCT
6246641 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
6246682 GGGAATAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6246727 original size:18 final size:18
Alignment explanation
Indices: 6246643--6246743 Score: 71
Period size: 18 Copynumber: 5.4 Consensus size: 18
6246633 ATATATCTAT
*
6246643 AATAATAATAATAAT-AA
1 AATAATAATAATAGTGAA
*
6246660 TAATAATAATAATAAT-AA
1 -AATAATAATAATAGTGAA
*
6246678 TAATGGGAATAGTAATAGTGAA
1 -AAT---AATAATAATAGTGAA
* * *
6246700 TAAAAATAATAGTCGTGAA
1 -AATAATAATAATAGTGAA
*
6246719 AATAATAATAATAGTGAC
1 AATAATAATAATAGTGAA
6246737 AATAATA
1 AATAATA
6246744 GAGATAACAT
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
18 42 0.61
19 12 0.17
21 10 0.14
22 5 0.07
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (18 bp):
AATAATAATAATAGTGAA
Found at i:6246958 original size:3 final size:3
Alignment explanation
Indices: 6246910--6247088 Score: 125
Period size: 3 Copynumber: 60.3 Consensus size: 3
6246900 ATATGGTAAA
* * * * * *
6246910 AAT ATT AAT -AT ATT AAT AAG AAT AAT AGT AAT GA- AAT AA- GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * * * *
6246955 AAT AAT AAT AAC CGT AAG AGT AGT AAT AAA AAT -AC AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
6247002 -AT ATT AAAT AACA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT -AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
6247048 AAT AAT AAT AAT AAT AAT AAT AAT AAG AGAT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A
6247089 TACTACCTTA
Statistics
Matches: 132, Mismatches: 36, Indels: 16
0.72 0.20 0.09
Matches are distributed among these distances:
2 7 0.05
3 119 0.90
4 6 0.05
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6247726 original size:9 final size:8
Alignment explanation
Indices: 6247712--6247755 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
6247702 TTTTAAAAAT
6247712 TATATCTA
1 TATATCTA
6247720 GTATATCTA
1 -TATATCTA
*
6247729 TATATATA
1 TATATCTA
*
6247737 TATATATA
1 TATATCTA
*
6247745 TATATATA
1 TATATCTA
6247753 TAT
1 TAT
6247756 GTGTTACTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 26 0.76
9 8 0.24
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (8 bp):
TATATCTA
Found at i:6247734 original size:2 final size:2
Alignment explanation
Indices: 6247721--6247755 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
6247711 TTATATCTAG
*
6247721 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6247756 GTGTTACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6249827 original size:46 final size:45
Alignment explanation
Indices: 6249774--6249949 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 45
6249764 TATTTGGGCA
6249774 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * *
6249819 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GC
* *
6249866 ATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAAC
1 -TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* *
6249912 TCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6249950 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 4 0.04
45 5 0.05
46 63 0.58
47 31 0.29
48 1 0.01
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:6249929 original size:93 final size:93
Alignment explanation
Indices: 6249770--6249942 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
6249760 GGGATATTTG
* *
6249770 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
6249835 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
6249863 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAAC-TCCTGAGCTCGTTG
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTG
6249926 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
6249943 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 5 0.07
93 70 0.93
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:6253916 original size:50 final size:51
Alignment explanation
Indices: 6253839--6253967 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
6253829 GACCATGGCA
* *
6253839 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
6253890 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
6253940 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
6253968 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:6253981 original size:31 final size:31
Alignment explanation
Indices: 6253943--6254153 Score: 264
Period size: 31 Copynumber: 6.8 Consensus size: 31
6253933 ACAAATGACA
6253943 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
6253974 AGTGAAAAGTGGTAGCTTCAGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
6254005 AGTGAAAAGTGGTAGCTTCTGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * **
6254036 ACTGAAAAGTGGTAGC-TCTTGCTAATTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* * *
6254067 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
6254098 AATGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
6254129 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
6254154 AAGTGACAAG
Statistics
Matches: 156, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
30 3 0.02
31 150 0.96
32 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:6254280 original size:49 final size:48
Alignment explanation
Indices: 6254169--6254300 Score: 187
Period size: 49 Copynumber: 2.8 Consensus size: 48
6254159 ACAAGTGATT
* * * *
6254169 TTCGTATAAGACCATATCTGGGATATGGCATCG--GTGAGATATGTGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGA
*
6254215 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGA
*
6254263 TTACGTGTAAGACCATAGCTGGGCTATGACATCGATAT
1 TT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATAT
6254301 ATGAAGATGT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
46 30 0.39
48 13 0.17
49 34 0.44
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGA
Found at i:6255049 original size:30 final size:30
Alignment explanation
Indices: 6255013--6255187 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
6255003 ACTTTTCTCA
*
6255013 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
6255043 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
6255073 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
6255103 ATTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
6255133 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
6255163 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
6255188 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:6255694 original size:23 final size:24
Alignment explanation
Indices: 6255668--6255746 Score: 62
Period size: 23 Copynumber: 3.5 Consensus size: 24
6255658 CTTTTTTTTT
6255668 TATTA-GTATATTTCTTAATATTA
1 TATTACGTATATTTCTTAATATTA
* * *
6255691 TATTA--TATATATCTT-TTAATA
1 TATTACGTATATTTCTTAATATTA
* *
6255712 TATTAGGTATATTT-TAAAT-TCTA
1 TATTACGTATATTTCTTAATAT-TA
6255735 TATTACGTATAT
1 TATTACGTATAT
6255747 ATATATTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
21 9 0.20
22 10 0.23
23 25 0.57
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (24 bp):
TATTACGTATATTTCTTAATATTA
Found at i:6255810 original size:25 final size:25
Alignment explanation
Indices: 6255778--6255826 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
6255768 ATATATCTTA
**
6255778 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
6255803 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
6255827 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:6256004 original size:16 final size:15
Alignment explanation
Indices: 6255980--6256027 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
6255970 TAATTATTAT
*
6255980 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
6255996 TATTTTAATATTTTA
1 TATTTTAATATTTTA
6256011 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
6256027 T
1 T
6256028 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:6256015 original size:7 final size:8
Alignment explanation
Indices: 6255980--6256031 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
6255970 TAATTATTAT
*
6255980 TATTCTAA
1 TATTTTAA
*
6255988 TATTTTGA
1 TATTTTAA
6255996 TATTTTAA
1 TATTTTAA
6256004 TATTTT-A
1 TATTTTAA
6256011 TATTTTATA
1 TATTTTA-A
*
6256020 TATTTTAT
1 TATTTTAA
6256028 TATT
1 TATT
6256032 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:6257617 original size:12 final size:12
Alignment explanation
Indices: 6257600--6257635 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
6257590 ATTCATTTGA
6257600 CATTCATGCATT
1 CATTCATGCATT
*
6257612 CATTCATGCATC
1 CATTCATGCATT
*
6257624 CATTCATTCATT
1 CATTCATGCATT
6257636 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:6257629 original size:16 final size:17
Alignment explanation
Indices: 6257608--6257639 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6257598 GACATTCATG
6257608 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
6257624 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
6257640 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:6266104 original size:73 final size:73
Alignment explanation
Indices: 6265924--6266492 Score: 589
Period size: 73 Copynumber: 7.5 Consensus size: 73
6265914 GATTTTCAAA
** *
6265924 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGT-ATTTTAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAAGACACGCTGAGGTAATTTCAAT
6265987 TTCTGTTT-T-
63 TTCTGTTTGTC
*
6265996 TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
*
6266061 TATTTGTC
66 TGTTTGTC
*
6266069 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6266134 TGTTTGTC
66 TGTTTGTC
6266142 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6266207 TGTTTGTC
66 TGTTTGTC
* *
6266215 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGG-----T-AAT
*
6266279 TTCTATTTTTCAAT-TTCTGTTC
57 TTC-A-ATTTC--TGTT-TG-TC
* ** * * * * * * *
6266301 GTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
1 -AAAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAAGACACGCTGAGGTA-A
* *
6266363 TTTAAAATTTCTGTTTTTC
56 TTT-CAATTTCTGTTTGTC
**
6266382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6266447 TGTTTGTC
66 TGTTTGTC
* *
6266455 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
6266493 GGTTCACATG
Statistics
Matches: 423, Mismatches: 39, Indels: 69
0.80 0.07 0.13
Matches are distributed among these distances:
69 1 0.00
70 12 0.03
71 15 0.04
72 37 0.09
73 229 0.54
74 3 0.01
75 29 0.07
80 18 0.04
81 11 0.03
82 4 0.01
83 8 0.02
84 9 0.02
85 9 0.02
86 5 0.01
87 17 0.04
90 10 0.02
92 4 0.01
93 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTGTC
Found at i:6266372 original size:92 final size:90
Alignment explanation
Indices: 6266215--6266383 Score: 250
Period size: 92 Copynumber: 1.8 Consensus size: 90
6266205 TCTGTTTGTC
* *
6266215 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTCTTTTAAATT
6266280 TCTATTTTTCAATTTCTGTTCGTAAAA
64 TCTATTTTTCAATTTCTGTTCGTAAAA
*
6266307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGT-CTTTT-AAAT
*
6266371 TTCTGTTTTTCAA
63 TTCTATTTTTCAA
6266384 AAATCAACTC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
90 11 0.16
91 4 0.06
92 53 0.76
93 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (90 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTCTTTTAAATTTC
TATTTTTCAATTTCTGTTCGTAAAA
Found at i:6266433 original size:165 final size:164
Alignment explanation
Indices: 6266142--6268109 Score: 955
Period size: 164 Copynumber: 12.4 Consensus size: 164
6266132 TCTGTTTGTC
*
6266142 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
* **
6266207 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTAA
*
6266272 TTTCAATTTCTATTTTTCAATTTCTGTTCGTAAAA
130 TTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* *
6266307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTT-AAATT
* *
6266372 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACGCTGAGGTA
64 TCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTA
6266436 ATTTCAATTTC----TG-----TT-TG-TC------
129 ATTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* * * *
6266455 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GGTTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGG-----T-AA-
* *
6266519 TTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
56 TT-TA------AATTTCTGTTTGT----CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
6266584 TCAGG--ACACGCTGAGGTACTTT-AA-----ATTT-T---TGT-T-TTC------
110 TC-GGCCACACGCTGAGGTAATTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* ** *
6266620 AAAAATCAACTCATATTGC-AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
* *
6266684 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG---
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTAA
* *
6266746 --------TC--TTT-TCAATTTCTGTCCGTGAAA
130 TTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* *
6266770 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTAAATTT
* * * *
6266835 TTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
65 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTA
* *
6266900 TTTTCAATTTCTGTTCT-TCAATTTCTGTTCGTAAAAAA
129 ATTTCAATTTCTATT-TGTCAATTTCTGTTCGT--AAAA
* *
6266938 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTAAATTT
* * *
6267003 CTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGG-GACACGCTGAGGTAA
65 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAA
6267067 TTTCAATTTC----TG-----TT-TG-TC------
130 TTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* *
6267085 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGG-----T-AA-
* * *
6267149 TTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
56 ------T-TTAAATTTCTGTTTGT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * *
6267214 AGG--ACACACTGAGGTATTTTAAATTTC----TG-----TT-T-TTC------
112 -GGCCACACGCTGAGGTAATTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* *
6267249 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGG-----T-AA-
* * * ** * * * * *
6267313 TTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAG--T
56 ------T-TTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
* ***
6267373 TGAGCCTTAGGACACGCTGAGGT-A--T---TTT-TA------AATTTCTGTT--TTTCA
111 CG-GCC-----ACACGCTGAGGTAATTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
** *
6267418 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
*
6267483 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG---
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGTAA
*
6267545 --------TC--TTT-T-AATTTCTGTTCTTAAAAA
130 TTTCAATTTCTATTTGTCAATTTCTGTTCGT-AAAA
* * * *
6267569 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGTTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTAAATTT
* * *
6267634 CTATTTTTCAAAAATCAACTCATATTGCGA-A-GTGAGTTGAGCCTCAGG--GCACGCTGAGGT-
65 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCCACACGCTGAGGTA
* * * ***
6267694 ATTGTCAATTTTTGTGTT-TCAATTTATGTT--T-TTC
129 ATT-TCAATTTCTAT-TTGTCAATTTCTGTTCGTAAAA
* ** * * **
6267728 AAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCGGGACATGTTGAGGTAATTGCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
* * * * * * * ** *
6267793 T-ATTGTCAAAAAAATCAATTCATATTACAAAAAGTGAGTTGAGCCTCAGCTCACGTGCTAAGGT
66 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAGGT
* *
6267857 ATTTTCAATTTC----TG----TTTCTGTTTGT----
128 AATTTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
* * * *
6267882 CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
* * * **
6267947 TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCGG-GGCACGCTGAGG-AAT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAAT
* *
6268010 TGTCGATTT-T-TTTGT---TTTAAT-TT--TAAAAA
131 T-TCAATTTCTATTTGTCAATTT-CTGTTCGT-AAAA
* * * * *
6268039 AATAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
1 AA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTT
6268104 CTGTTT
65 CTGTTT
6268110 TTTTCCAATT
Statistics
Matches: 1498, Mismatches: 139, Indels: 339
0.76 0.07 0.17
Matches are distributed among these distances:
139 4 0.00
142 2 0.00
143 3 0.00
144 39 0.03
145 1 0.00
146 12 0.01
147 40 0.03
148 67 0.04
149 10 0.01
150 57 0.04
151 100 0.07
152 105 0.07
153 69 0.05
154 76 0.05
155 24 0.02
156 12 0.01
157 10 0.01
158 74 0.05
159 72 0.05
160 5 0.00
161 27 0.02
162 57 0.04
163 28 0.02
164 174 0.12
165 106 0.07
166 93 0.06
167 76 0.05
168 115 0.08
169 38 0.03
170 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (164 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGTAAT
TTCAATTTCTATTTGTCAATTTCTGTTCGTAAAA
Found at i:6266493 original size:73 final size:73
Alignment explanation
Indices: 6266307--6266522 Score: 315
Period size: 75 Copynumber: 2.9 Consensus size: 73
6266297 GTTCGTAAAA
* *
6266307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTT-CAATT
*
6266372 TCTGTTTTTC
64 TCTGTTTGTC
*
6266382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
6266447 TGTTTGTC
66 TGTTTGTC
* * * * *
6266455 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGTTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
6266520 TCT
64 TCT
6266523 ATTCTTCAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
73 51 0.40
74 3 0.02
75 75 0.58
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:6266921 original size:14 final size:14
Alignment explanation
Indices: 6266902--6266929 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6266892 CTGAGGTCTT
6266902 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6266916 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6266930 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:6267108 original size:73 final size:73
Alignment explanation
Indices: 6266938--6267155 Score: 337
Period size: 73 Copynumber: 2.9 Consensus size: 73
6266928 TCGTAAAAAA
* *
6266938 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
6267003 CTGTTTTTC
65 CTGTTTGTC
* *
6267012 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
6267077 TGTTTGTC
66 TGTTTGTC
* * *
6267085 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
6267150 TCTGTT
64 TCTGTT
6267156 CTTCAATTTC
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
73 55 0.42
74 52 0.39
75 25 0.19
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:6267162 original size:14 final size:14
Alignment explanation
Indices: 6267143--6267170 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6267133 CTGAGGTCTT
6267143 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6267157 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6267171 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:6267242 original size:89 final size:88
Alignment explanation
Indices: 6267068--6267250 Score: 262
Period size: 91 Copynumber: 2.1 Consensus size: 88
6267058 CTGAGGTAAT
* * *
6267068 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACA-G
* *
6267133 CTGAGGTCTTTTCAATTTCTGTTC
65 CTGAGGTATTTTAAATTTCTGTTC
6267157 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC
1 TTCAATTTCTGTTCGT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACAC
*
6267221 A-CTGAGGTATTTTAAATTTCTGTTT
63 AGCTGAGGTATTTTAAATTTCTGTTC
6267246 TTCAA
1 TTCAA
6267251 AAATCAACTC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
89 41 0.48
91 42 0.49
92 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (88 bp):
TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACAGC
TGAGGTATTTTAAATTTCTGTTC
Found at i:6267281 original size:73 final size:74
Alignment explanation
Indices: 6267176--6267325 Score: 232
Period size: 73 Copynumber: 2.0 Consensus size: 74
6267166 TGTTCGTAAA
6267176 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACA-CTGAGGTATTTTAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACAGCTGAGGTATTTTAAATT
*
6267239 TCTGTTTTTC
65 TCTGTTCTTC
* * *
6267249 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACA-GCTGAGGTATTTTAAATT
6267314 TCTGTTCTTC
65 TCTGTTCTTC
6267324 AA
1 AA
6267326 TTTCTGTTCG
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
72 2 0.03
73 42 0.60
75 26 0.37
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACAGCTGAGGTATTTTAAATTT
CTGTTCTTC
Found at i:6267326 original size:14 final size:14
Alignment explanation
Indices: 6267307--6267334 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6267297 CTGAGGTCTT
6267307 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6267321 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6267335 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:6267487 original size:242 final size:226
Alignment explanation
Indices: 6267324--6268111 Score: 794
Period size: 226 Copynumber: 3.4 Consensus size: 226
6267314 TCTGTTCTTC
*
6267324 AATTTCTGTTCGTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACG
1 AATTTCTGTTC-TTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACG
*
6267389 CTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 CTGAGGTATTTTTAAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
6267454 TCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGA
130 TCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
6267519 GTTGAGCCTCGGCTCACATGCTGAGGTCTTTT
195 GTTGAGCCTCGGCTCACATGCTGAGGTCTTTT
*
6267551 AATTTCTGTTCTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGT
1 AATTTCTGTTCTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGC
6267616 TGAGGTATTTTTAAATTTCTATTTTTC-AAAAATCAACTCATATTGCGA-A-GTGAGTTGAGCCT
66 TGAGGTATTTTTAAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
6267678 CAGGG-CACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACTCAT
131 C-GGGACACGCTGA-G----GT-AA--------TTTCAATTTCTGTTTTTCAAAAATCAACTCAT
* * * * **
6267742 ATTGCGACAGGTGAGTTGAGCCTCGG--GACATGTTGAGGTAATTGC
181 ATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT-CTTTT
* * * * * * * * * **
6267787 AATTTCTATT-GT--CAAAAAAATCAATTCATATTACAAAAAGTGAGTTGAGCCTCAGCTCACGT
1 AATTTCTGTTCTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACAC--
* * * ***
6267849 GCTAAGGTA-TTTTCAATTTCTGTTTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTT
64 GCTGAGGTATTTTTAAATTTC--TAT-T-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
6267913 GAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGA
125 GAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGA
* **
6267978 GGTGAGTTGAGTCTCGGGGCAC--GCTGAGGAATTGTCGATTTT
190 GGTGAGTTGAGCCTCGGCTCACATGCTGA-G----GTC--TTTT
** * * * * *
6268020 TTTGTTTTAATT-TTAAAAAAATAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACA
1 AAT-TTCT-GTTCTTAAAAAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACA
* *
6268084 CGCTGAGGTA-TTTTCAATTTCTGTTTTT
63 CGCTGAGGTATTTTTAAATTTCTATTTTT
6268112 TTCCAATTTC
Statistics
Matches: 466, Mismatches: 55, Indels: 75
0.78 0.09 0.13
Matches are distributed among these distances:
223 22 0.05
224 5 0.01
225 21 0.05
226 78 0.17
227 69 0.15
228 3 0.01
229 4 0.01
232 5 0.01
233 43 0.09
234 15 0.03
235 25 0.05
236 34 0.07
237 60 0.13
238 37 0.08
239 20 0.04
240 4 0.01
241 21 0.05
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (226 bp):
AATTTCTGTTCTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGC
TGAGGTATTTTTAAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCGGCTCACATGCTGAGGTCTTTT
Found at i:6267529 original size:73 final size:73
Alignment explanation
Indices: 6267343--6267694 Score: 442
Period size: 75 Copynumber: 4.7 Consensus size: 73
6267333 TCGTAAAAAA
** *
6267343 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTAAATTT
6267408 CTGTTTTTC
65 CTGTTTTTC
*
6267417 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTAAATTT
*
6267482 CTGTTTGTC
65 CTGTTTTTC
* * * *
6267491 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT-CTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTAAATT
**
6267555 TCTGTTCTTAAAAA
64 TCTGTT-TT---TC
** * *
6267569 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGTTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTAAATTT
*
6267634 CTATTTTTC
65 CTGTTTTTC
6267643 AAAAATCAACTCATATTGCGA-A-GTGAGTTGAGCCTCAGGG-CACGCTGAGGTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTA
6267695 TTGTCAATTT
Statistics
Matches: 243, Mismatches: 25, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
72 24 0.10
73 43 0.18
74 50 0.21
75 64 0.26
76 10 0.04
77 2 0.01
78 50 0.21
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTAAATTTC
TGTTTTTC
Found at i:6267889 original size:870 final size:833
Alignment explanation
Indices: 6265921--6268111 Score: 2493
Period size: 870 Copynumber: 2.6 Consensus size: 833
6265911 TCTGATTTTC
*
6265921 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTA-TTTT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTT
* ** *
6265984 -AATTTCTGTTTTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
63 AAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGA
*
6266046 GGTAATTTCAATTTCTATTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
128 GGTAATTGCAATTTCTA-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A
**
6266109 GACACGCTGA-G-A---TAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTG
191 GACACGCTGAGGTATTTTAATTTCTGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTG
*
6266169 AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGC
256 AGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGC
*
6266234 GAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTTTTCAATTTCTGT
321 GAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCT-GTTTTCAATTTCTGT
6266299 TCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
385 TCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TT
*
6266364 TTAAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
448 TT-AAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGC
* * * *
6266429 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCG
512 TGAGGTAATTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAG
* *
6266494 GTTCACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACT
577 G-T-ACACGCTGAGGTATTTTCAA----TATTCTTC-ATTTCTGTTC-----AAAAAAATCAACT
* *
6266559 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTACTTTAAATTTTTGTTTTCAAAA
630 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTCAAAA
*
6266624 ATCAACTCATATTGCAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTT
695 ATCAACTCATATTGCAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAATTTCAATTTCTGTTT
* * * * *
6266689 GTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCA
760 GTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGGTCTTTTAA
*
6266754 ATTTCTGTCCGTG
823 ATTTCTAT-C-TG
6266767 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAA
* *
6266832 TTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAG
66 TTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAG
* *
6266897 GTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAAATCAACTCATATTGCGAGAG
129 G-----T-AA--T-TG-----CAATTTCTATT-GT---CAAAAAAATCAACTCATATTGCGAGAG
6266962 GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTG----T-TTT-TCAAAAATCAA
176 GTGAGTTGAGCCTCA-GACACGCTGAGGTA-TTTT-AATTTCTGTTTCTGTTTGTCAAAAATCAA
* *
6267021 CTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
238 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
6267086 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
303 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
6267151 CTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
368 CTGTT-TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
6267216 GACACACTGAGGTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
432 GACACGCTGAGGTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
6267281 AGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAA
497 AGCCTCGG--CACACGCTGAGG-----T-AA-------T-TTCAATTTCTGTTCGT-----AAAA
* *
6267346 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-ACACGCTGAGGTATTTTTAA-A-T-T
541 AATCAACTCATATTGCGAGAGGTGAGTTAAGCC-TAGGTACACGCTGAGGTATTTTCAATATTCT
*
6267407 TC-TGTT-T-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
605 TCAT-TTCTGTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
* *
6267468 GGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
669 GGTAATTTAAATTTCTGTTT-TCAAAAATCAACTCATATTGC-AAAGGTGAGTTGAGCCTCGG--
* * *
6267533 CACATGCTGAGGT-CTTTTAATTTCTGTTCT-TAAAAAAAAAATCAACTCATATTGCGAGAGGTG
730 CACACGCTGAGGTAATTTCAATTTCTGTT-TGT----AAAAAATCAACTCATATTGCGAGAGGTG
* * *
6267596 AGTTGAGCCTTAGG-ACACGTTGAGGTATTTTTAAATTTCTAT-TT
790 AGTTGAGCC-TAGGCACACGCTGAGGT-CTTTTAAATTTCTATCTG
*** *
6267640 TTCAAAAATCAACTCATATTGCGA-A-GTGAGTTGAGCCTCAGGGCACGCTGAGGTATTGTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-G----GT--A-
* *
6267703 TTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCGG
58 ---T-T-TTTAAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * * * * *
6267768 GACATGTTGAGGTAATTGCAATTTCTATTGTCAAAAAAATCAATTCATATTACAAAAAGTGAGTT
118 GACATGCTGAGGTAATTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
6267833 GAGCCTCAGCTCACGTGCTAAGGTATTTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATA
183 GAGCCTCAG-ACAC--GCTGAGGTATTTT-AATTTCTGTTTCTGTTTGTCAAAAATCAACTCATA
* *
6267897 TTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATC
244 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATC
* * ** ** * * *
6267962 AACTCATATTGCAAGAGGTGAGTTGAGTCTCGGGGCAC--GCTGAGGAATTGTCGATTTTTTTGT
309 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTC-A-ATTTCTGT
** * *
6268025 TTT-AA--T-T-TT-AAAAAAATAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACA
372 TTTCAATTTCTGTTCGTAAAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
6268084 CGCTGAGGTATTTTCAATTTCTGTTTTT
436 CGCTGAGGTATTTTAAATTTCTGTTTTT
6268112 TTCCAATTTC
Statistics
Matches: 1168, Mismatches: 82, Indels: 172
0.82 0.06 0.12
Matches are distributed among these distances:
844 13 0.01
845 4 0.00
846 52 0.04
847 2 0.00
848 37 0.03
850 10 0.01
855 1 0.00
856 2 0.00
858 1 0.00
859 1 0.00
863 8 0.01
864 117 0.10
865 13 0.01
866 9 0.01
867 57 0.05
868 28 0.02
869 120 0.10
870 343 0.29
871 52 0.04
872 22 0.02
873 38 0.03
874 14 0.01
875 13 0.01
876 25 0.02
877 38 0.03
878 6 0.01
879 3 0.00
880 1 0.00
881 1 0.00
882 12 0.01
883 16 0.01
884 55 0.05
886 17 0.01
888 34 0.03
889 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (833 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAA
TTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGT
AATTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
GCTGAGGTATTTTAATTTCTGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTCAATTTCTGTTCGTAA
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTT
CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGGTACACGCT
GAGGTATTTTCAATATTCTTCATTTCTGTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTCAAAAATCAACTCATATTGCAAAGGT
GAGTTGAGCCTCGGCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAAATCAACTCATATTG
CGAGAGGTGAGTTGAGCCTAGGCACACGCTGAGGTCTTTTAAATTTCTATCTG
Found at i:6267898 original size:80 final size:78
Alignment explanation
Indices: 6267803--6267951 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 78
6267793 TATTGTCAAA
* * *
6267803 AAAATCAATTCATATTACAAAAAGTGAGTTGAGCCTCAGCTCACGTGCTAAGGTATTTTCAATTT
1 AAAATCAACTCATATTACAAAAAGTGAGTTGAGCCTCAG--CACATGCTAAGGTAATTTCAATTT
6267868 CTGTTTCTGTTTGTC
64 CTGTTTCTGTTTGTC
* * * * * *
6267883 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTACAAAAAGTGAGTTGAGCCTCAGCACATGCTAAGGTAATTTCAATTTCT
6267948 GTTT
66 GTTT
6267952 TTCAAAAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
78 26 0.43
80 34 0.57
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (78 bp):
AAAATCAACTCATATTACAAAAAGTGAGTTGAGCCTCAGCACATGCTAAGGTAATTTCAATTTCT
GTTTCTGTTTGTC
Found at i:6267981 original size:73 final size:73
Alignment explanation
Indices: 6267710--6268010 Score: 302
Period size: 73 Copynumber: 4.0 Consensus size: 73
6267700 AATTTTTGTG
* * * * *
6267710 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCGGGACATGT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
6267775 TGAGGTAA
66 TGAGGTAA
* * * * * * * *
6267783 TTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTACAAAAAGTGAGTTGAGCCTCAGCTCAC
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAG--GAC
* * *
6267847 GTGCTAAGGTAT
62 ATGCTGAGGTAA
*
6267859 TTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTCAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG
6267923 ACATGCTGAGGTAA
60 ACATGCTGAGGTAA
* * * *
6267937 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCGGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
6268002 TGAGG-AA
66 TGAGGTAA
6268009 TT
1 TT
6268011 GTCGATTTTT
Statistics
Matches: 184, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
72 10 0.05
73 58 0.32
74 35 0.19
76 20 0.11
78 23 0.12
80 34 0.18
82 2 0.01
83 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTAA
Found at i:6268120 original size:17 final size:17
Alignment explanation
Indices: 6268094--6268128 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6268084 CGCTGAGGTA
6268094 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
6268110 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
6268128 T
1 T
6268129 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:6268361 original size:75 final size:77
Alignment explanation
Indices: 6268269--6268549 Score: 412
Period size: 77 Copynumber: 3.7 Consensus size: 77
6268259 GAGTTGAGCC
* * *
6268269 TTTT-AATTTCTGTTTTTC-AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTTA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
*
6268331 CGTGCTGAGCTA
66 CGTGCTGAGCTG
*
6268343 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
6268408 CGTGCTGAGCTG
66 CGTGCTGAGCTG
* ** *
6268420 TTTTCAGTTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
**
6268485 CACGCTGAGGC-G
66 CGTGCTGA-GCTG
6268497 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
6268550 TCTCGGGCCA
Statistics
Matches: 190, Mismatches: 13, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
74 4 0.02
75 44 0.23
76 6 0.03
77 134 0.71
78 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
CGTGCTGAGCTG
Found at i:6268555 original size:75 final size:77
Alignment explanation
Indices: 6268269--6268589 Score: 388
Period size: 77 Copynumber: 4.2 Consensus size: 77
6268259 GAGTTGAGCC
* * ** *
6268269 TTTT-AATTTCTGTTTTTC-AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTTA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
** *
6268331 CGTGCTGAGCTA
66 CACGCTGAGCTG
* **
6268343 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
**
6268408 CGTGCTGAGCTG
66 CACGCTGAGCTG
* *
6268420 TTTTCAGTTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
6268485 CACGCTGAGGC-G
66 CACGCTGA-GCTG
*
6268497 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGC-C
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTC
* * *
6268559 ACACACTGAGGTC
65 ACACGCTGAGCTG
6268572 TTTTCAAATTT-TGCTTTT
1 TTTTC-AATTTCTGCTTTT
6268590 AATTTCTGCT
Statistics
Matches: 222, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
74 5 0.02
75 68 0.31
76 13 0.06
77 134 0.60
78 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
CACGCTGAGCTG
Found at i:6268619 original size:15 final size:14
Alignment explanation
Indices: 6268571--6268623 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
6268561 ACACTGAGGT
6268571 CTTTTCAAATTT-TG
1 CTTTTC-AATTTCTG
6268585 CTTTT-AATTTCTG
1 CTTTTCAATTTCTG
6268598 CTTTTCAATTTCTG
1 CTTTTCAATTTCTG
*
6268612 TTTTTTCAATTT
1 -CTTTTCAATTT
6268624 ATATTTTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
12 5 0.14
13 7 0.20
14 13 0.37
15 10 0.29
ACGTcount: A:0.17, C:0.15, G:0.06, T:0.62
Consensus pattern (14 bp):
CTTTTCAATTTCTG
Found at i:6269418 original size:30 final size:30
Alignment explanation
Indices: 6269382--6269556 Score: 210
Period size: 30 Copynumber: 5.8 Consensus size: 30
6269372 ACTTTTCTCA
*
6269382 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
6269412 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
6269442 ACTAGCCACTCCTTTTCTACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
6269472 ATTAGCTACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
6269502 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
6269532 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
6269557 CTTGTACCTA
Statistics
Matches: 126, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
29 3 0.02
30 123 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:6270194 original size:25 final size:25
Alignment explanation
Indices: 6270162--6270210 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
6270152 ATATATCTTA
**
6270162 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
6270187 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
6270211 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:6270382 original size:8 final size:8
Alignment explanation
Indices: 6270364--6270415 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
6270354 TAATTATTAT
*
6270364 TATTCTAA
1 TATTTTAA
*
6270372 TATTTTGA
1 TATTTTAA
6270380 TATTTTAA
1 TATTTTAA
6270388 TA-TTTAA
1 TATTTTAA
6270395 TATTTTATA
1 TATTTTA-A
*
6270404 TATTTTAT
1 TATTTTAA
6270412 TATT
1 TATT
6270416 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:6270406 original size:24 final size:24
Alignment explanation
Indices: 6270364--6270416 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
6270354 TAATTATTAT
6270364 TATTCTAATATTTTGATATTTTAA
1 TATTCTAATATTTTGATATTTTAA
* *
6270388 TATT-TAATATTTTATATATTTTAT
1 TATTCTAATATTTT-GATATTTTAA
6270412 TATTC
1 TATTC
6270417 ACATCATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTCTAATATTTTGATATTTTAA
Found at i:6272457 original size:15 final size:15
Alignment explanation
Indices: 6272422--6272497 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
6272412 CTTGGGTTTT
* *
6272422 TTTATCCTGGATCTC
1 TTTATTCTGGATTTC
6272437 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
* *
6272452 TTTATTCCGGGTTTC
1 TTTATTCTGGATTTC
*
6272467 TCTA-TCTTGGATTTC
1 TTTATTC-TGGATTTC
*
6272482 TTTATTC-GGTTTTC
1 TTTATTCTGGATTTC
6272496 TT
1 TT
6272498 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
14 10 0.20
15 38 0.76
16 2 0.04
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:6274938 original size:46 final size:46
Alignment explanation
Indices: 6274885--6275060 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
6274875 TATTTGGGCA
6274885 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
6274931 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
6274978 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
6275024 CCCGAGA-TCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6275061 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 64 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:6275040 original size:93 final size:93
Alignment explanation
Indices: 6274881--6275053 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
6274871 GGGATATTTG
* * *
6274881 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
6274946 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
6274974 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGA-TCGTTG
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGA-ACTCGTTG
6275037 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
6275054 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.03
93 72 0.96
94 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:6276827 original size:13 final size:13
Alignment explanation
Indices: 6276804--6276834 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6276794 ATAAGTATTA
6276804 ACATA-TATATAT
1 ACATATTATATAT
6276816 ACATATTATATAT
1 ACATATTATATAT
6276829 ACATAT
1 ACATAT
6276835 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (13 bp):
ACATATTATATAT
Found at i:6277484 original size:19 final size:19
Alignment explanation
Indices: 6277446--6277485 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
6277436 CTTTCTTGTA
*
6277446 TTATTATTTTTAGCATATT
1 TTATTATTTTTAGCACATT
6277465 TTATTATTATTTAG-ACATT
1 TTATTATT-TTTAGCACATT
6277484 TT
1 TT
6277486 TTTAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATTATTTTTAGCACATT
Found at i:6277542 original size:20 final size:22
Alignment explanation
Indices: 6277503--6277543 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6277493 TAATATTACA
*
6277503 TATATATATTTTATAGTTGTTT
1 TATATATATTATATAGTTGTTT
6277525 TATATATATTAT-TA-TTGTT
1 TATATATATTATATAGTTGTT
6277544 CCTAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (22 bp):
TATATATATTATATAGTTGTTT
Found at i:6279902 original size:18 final size:18
Alignment explanation
Indices: 6279879--6279913 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
6279869 GGTAATCATA
6279879 GAGCTTTTGAGTGAAAGT
1 GAGCTTTTGAGTGAAAGT
6279897 GAGCTTTTGAGTGAAAG
1 GAGCTTTTGAGTGAAAG
6279914 CGAGTGGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (18 bp):
GAGCTTTTGAGTGAAAGT
Done.