Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 230 of 444
Found at i:64919111 original size:22 final size:23
Alignment explanation
Indices: 64919062--64919118 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
64919052 ATTAGGTACC
*
64919062 ATTGTCGACGCACTTGGGCTTTT
1 ATTGTCGACGCACTTAGGCTTTT
*
64919085 TTTGTCGACGCACTTAGG-TTTT
1 ATTGTCGACGCACTTAGGCTTTT
*
64919107 ATTGTCAACGCA
1 ATTGTCGACGCA
64919119 GTTCATTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.39
Consensus pattern (23 bp):
ATTGTCGACGCACTTAGGCTTTT
Found at i:64921288 original size:54 final size:54
Alignment explanation
Indices: 64921226--64921335 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
64921216 GAAAATTGAG
*
64921226 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAATTATAAT
1 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
* **
64921280 TTAGTTTATTTTAAGTTTTAGCTATAGTGTTCATGCATTGCATCTAACTATAAT
1 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
64921334 TT
1 TT
64921336 TCATTTTGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (54 bp):
TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
Found at i:64924552 original size:104 final size:104
Alignment explanation
Indices: 64924372--64924588 Score: 308
Period size: 104 Copynumber: 2.1 Consensus size: 104
64924362 TTTCCATTAT
** * * * * *
64924372 TAAGGCTTGCTGATTTAAGATCGCAGCCTCCAATTATTTGAGTTAGCTGATTTAATATCGCAACT
1 TAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCACAACT
* * *
64924437 CCTAACAGCTCGCTGACCTACGTTCACAACTGATTTTAC
66 CCTAACAGCTCGCTGACCTACATTCACAACTAATGTTAC
**
64924476 TAAGGCTCACTGATTTAAGATCCCAACCTCTGATTATTTGAGTTAGCTAATTTAAGATCACAACT
1 TAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCACAACT
* *
64924541 CCTAACAGCTCGCTGACCTACATTCACAGCTAATGTTAT
66 CCTAACAGCTCGCTGACCTACATTCACAACTAATGTTAC
64924580 TAAGGCTCA
1 TAAGGCTCA
64924589 TTGACCTACA
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (104 bp):
TAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCACAACT
CCTAACAGCTCGCTGACCTACATTCACAACTAATGTTAC
Found at i:64924601 original size:36 final size:36
Alignment explanation
Indices: 64924554--64924628 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
64924544 AACAGCTCGC
64924554 TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
1 TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
* * *
64924590 TGACCTACATTCACTGCTGATTTTATTAAGGCTCAT
1 TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
64924626 TGA
1 TGA
64924629 TTTAAGAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (36 bp):
TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
Found at i:64924632 original size:140 final size:140
Alignment explanation
Indices: 64924450--64924728 Score: 398
Period size: 140 Copynumber: 2.0 Consensus size: 140
64924440 AACAGCTCGC
* * *
64924450 TGACCTACGTTCACAACTGATTTTACTAAGGCTCACTGATTTAAGATCCCAACC-TCTGATTATT
1 TGACCTACATTCACAACTGATTTTACTAAGGCTCACTGATTTAAGAACACAACCTTC-GATTATT
* *
64924514 TGAGTTAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTGACCTACATTCACAGCTAATGTTA
65 TGAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACATTCACAGCTAATGTTA
*
64924579 TTAAGGCTCAT
130 CTAAGGCTCAT
** * *
64924590 TGACCTACATTCACTGCTGATTTTATTAAGGCTCATTGATTTAAGAACACAACCTTCGATTATTT
1 TGACCTACATTCACAACTGATTTTACTAAGGCTCACTGATTTAAGAACACAACCTTCGATTATTT
* * * * * *
64924655 GAGATAGCTGATTTAAGATCGCAACTCCTAACAGCTCGCTAACTTACGTTCATAGCTAATTTTAC
66 GAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACATTCACAGCTAATGTTAC
64924720 TAAGGCTCA
131 TAAGGCTCA
64924729 CTGATTTAAG
Statistics
Matches: 122, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
140 120 0.98
141 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (140 bp):
TGACCTACATTCACAACTGATTTTACTAAGGCTCACTGATTTAAGAACACAACCTTCGATTATTT
GAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACATTCACAGCTAATGTTAC
TAAGGCTCAT
Found at i:64925039 original size:18 final size:18
Alignment explanation
Indices: 64925016--64925050 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64925006 TGGCCGTATG
*
64925016 GCTAGGCTGTGTGACATA
1 GCTAGGCTGTGTAACATA
*
64925034 GCTAGGTTGTGTAACAT
1 GCTAGGCTGTGTAACAT
64925051 TCAAACAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.31
Consensus pattern (18 bp):
GCTAGGCTGTGTAACATA
Found at i:64927017 original size:80 final size:80
Alignment explanation
Indices: 64926933--64927081 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
64926923 TATGGTAATC
* * *
64926933 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTTGCACAAATGCCTTCGGGTCTTAA
64926997 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64927013 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTTGCACAAATGCCTTCGGGTCTTAAC
64927078 CCGG
66 CCGG
64927082 TTATAATTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 57 0.98
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTTGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64927023 original size:40 final size:38
Alignment explanation
Indices: 64926974--64927081 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64926964 ATCACGATTT
64926974 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTC
* *
64927014 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTC
*
64927054 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64927082 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTC
Found at i:64935120 original size:80 final size:80
Alignment explanation
Indices: 64935036--64935184 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
64935026 TATGGTAATC
* * *
64935036 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTTGCACAAATGCCTTCGGGTCTTAA
64935100 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64935116 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTTGCACAAATGCCTTCGGGTCTTAAC
64935181 CCGG
66 CCGG
64935185 TTATAATTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 57 0.98
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTTGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64935126 original size:40 final size:38
Alignment explanation
Indices: 64935077--64935184 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64935067 ATCACGATTT
64935077 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTC
* *
64935117 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTC
*
64935157 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64935185 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTC
Found at i:64939394 original size:20 final size:20
Alignment explanation
Indices: 64939350--64939387 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
64939340 TATTATATAC
64939350 TTTTGAAGTCATTTTATAAT
1 TTTTGAAGTCATTTTATAAT
64939370 TTTTGAA-T-ATTTTATAAT
1 TTTTGAAGTCATTTTATAAT
64939388 AGTTTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (20 bp):
TTTTGAAGTCATTTTATAAT
Found at i:64939446 original size:31 final size:31
Alignment explanation
Indices: 64939376--64939446 Score: 74
Period size: 33 Copynumber: 2.2 Consensus size: 31
64939366 TAATTTTTGA
* *
64939376 ATATTTTATAATAGTTTTGTATTTTTTGTTT
1 ATATTTTATAATAGTTTTGAATTTTTTATTT
64939407 ATAAATTTTAATAA-A-TTTTGAATTTTTATATTT
1 AT--ATTTT-ATAATAGTTTTGAATTTTT-TATTT
64939440 ATATTTT
1 ATATTTT
64939447 GAATTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
31 7 0.21
32 11 0.32
33 12 0.35
34 4 0.12
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (31 bp):
ATATTTTATAATAGTTTTGAATTTTTTATTT
Found at i:64939453 original size:53 final size:48
Alignment explanation
Indices: 64939360--64939485 Score: 128
Period size: 51 Copynumber: 2.5 Consensus size: 48
64939350 TTTTGAAGTC
* * **
64939360 ATTTTATAATTTTTGAATATTTTATAATAGTTTTGTATTTTTTGTTTAT
1 ATTTTATAAATTTTGAAT-TTTTATAATAGTTTTGAATTTTTTAATTAT
64939409 AAATTTTAATAAATTTTGAATTTTTATATTTATA-TTTTGAATTTTTTAATTAT
1 --ATTTT-ATAAATTTTGAATTTTTATA---ATAGTTTTGAATTTTTTAATTAT
*
64939462 ATTTGATAAATATTTGAATTTTTA
1 ATTTTATAAAT-TTTGAATTTTTA
64939486 GAATCAAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
50 6 0.09
51 28 0.43
52 12 0.18
53 16 0.25
54 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (48 bp):
ATTTTATAAATTTTGAATTTTTATAATAGTTTTGAATTTTTTAATTAT
Found at i:64939461 original size:20 final size:20
Alignment explanation
Indices: 64939412--64939465 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
64939402 TGTTTATAAA
*
64939412 TTTTAA-TAAATTTTGAATT
1 TTTTAATTATATTTTGAATT
*
64939431 TTTATATTTATATTTTGAATT
1 TTT-TAATTATATTTTGAATT
64939452 TTTTAATTATATTT
1 TTTTAATTATATTT
64939466 GATAAATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 12 0.40
21 15 0.50
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTTAATTATATTTTGAATT
Found at i:64942703 original size:76 final size:76
Alignment explanation
Indices: 64942571--64942713 Score: 225
Period size: 76 Copynumber: 1.9 Consensus size: 76
64942561 GTGTATATTA
*
64942571 ATATTAAAAATCAGACTCACTTGATTATATTTAAAACTTAATTTAAAAATATGACCCACTTCAAA
1 ATATTAAAAATCAGACTCACTTGATCATATTTAAAACTTAATTTAAAAATATGACCCACTTCAAA
64942636 TATAACTATAT
66 TATAACTATAT
** * *
64942647 ATATTAAAAATGGGACTCACTTTATCATATTTAAAACTTAATTTAAAAATGA-GACCCACTTTAA
1 ATATTAAAAATCAGACTCACTTGATCATATTTAAAACTTAATTTAAAAAT-ATGACCCACTTCAA
64942711 ATA
65 ATA
64942714 GTTAAAAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 60 0.98
77 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.35
Consensus pattern (76 bp):
ATATTAAAAATCAGACTCACTTGATCATATTTAAAACTTAATTTAAAAATATGACCCACTTCAAA
TATAACTATAT
Found at i:64942708 original size:39 final size:40
Alignment explanation
Indices: 64942568--64942709 Score: 129
Period size: 39 Copynumber: 3.7 Consensus size: 40
64942558 TTTGTGTATA
* * * *
64942568 TTAATATTAAAAATCAGACTCACTTGATTATATTTAAAAC
1 TTAATATTAAAAATGAGACCCACTTTATCATATTTAAAAC
* *
64942608 TTAAT-TTAAAAAT-ATGACCCAC--T-TCA-A-ATATAAC
1 TTAATATTAAAAATGA-GACCCACTTTATCATATTTAAAAC
* *
64942642 TATATATATTAAAAATGGGACTCACTTTATCATATTTAAAAC
1 T-TA-ATATTAAAAATGAGACCCACTTTATCATATTTAAAAC
64942684 TTAAT-TTAAAAATGAGACCCACTTTA
1 TTAATATTAAAAATGAGACCCACTTTA
64942710 AATAGTTAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 21
0.72 0.10 0.19
Matches are distributed among these distances:
34 6 0.07
35 3 0.04
36 4 0.05
37 14 0.17
38 1 0.01
39 34 0.42
40 10 0.12
41 3 0.04
42 6 0.07
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (40 bp):
TTAATATTAAAAATGAGACCCACTTTATCATATTTAAAAC
Found at i:64943398 original size:21 final size:22
Alignment explanation
Indices: 64943374--64943428 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
64943364 AAAAGGGACC
64943374 TAAAACA-ACATCAAAACACAT
1 TAAAACACACATCAAAACACAT
** *
64943395 TAAAACATGC-TCAAAACATAT
1 TAAAACACACATCAAAACACAT
*
64943416 CAAAACACACATC
1 TAAAACACACATC
64943429 TTAAGTGCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.56, C:0.25, G:0.02, T:0.16
Consensus pattern (22 bp):
TAAAACACACATCAAAACACAT
Found at i:64945224 original size:2 final size:2
Alignment explanation
Indices: 64945217--64945259 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
64945207 TACTAACTTA
64945217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64945259 A
1 A
64945260 ATGCTATAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:64946118 original size:9 final size:9
Alignment explanation
Indices: 64946104--64946145 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
64946094 TGTTAAACCA
64946104 TTTTAAAAT
1 TTTTAAAAT
64946113 TTTT--AAT
1 TTTTAAAAT
*
64946120 TTTT-ATAT
1 TTTTAAAAT
64946128 TTTTAAAAT
1 TTTTAAAAT
64946137 TTTTAAAAT
1 TTTTAAAAT
64946146 AATTATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 7 0.24
8 6 0.21
9 16 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:64947983 original size:49 final size:50
Alignment explanation
Indices: 64947905--64948088 Score: 199
Period size: 49 Copynumber: 3.7 Consensus size: 50
64947895 ATCTATTGTG
* *
64947905 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** *** *
64947955 -GGTTGCGTGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * ** **
64948005 CGATCACGTGTGGAGTTCTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
64948055 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
64948089 TGCATACCAG
Statistics
Matches: 107, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 40 0.37
50 33 0.31
51 34 0.32
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:64970365 original size:43 final size:43
Alignment explanation
Indices: 64970311--64970424 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 43
64970301 CATTAAGATT
* * *
64970311 ATCGAGATATGATTACATGTAAGACCATGTCTAGGAAATTTGC
1 ATCGATATATGATTACATGTAAGACCATGTCTAGGAAAGTGGC
* * * * * * * *
64970354 ATCGTTATATGATTTCGTATAAAACCCTGTCTGGGATAGTGGC
1 ATCGATATATGATTACATGTAAGACCATGTCTAGGAAAGTGGC
* *
64970397 ATCGATATGTGATAACATGTAAGACCAT
1 ATCGATATATGATTACATGTAAGACCAT
64970425 ATCTGGGATA
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (43 bp):
ATCGATATATGATTACATGTAAGACCATGTCTAGGAAAGTGGC
Found at i:64972889 original size:32 final size:32
Alignment explanation
Indices: 64972853--64972917 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
64972843 TGTATCCATT
64972853 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
64972885 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
64972917 T
1 T
64972918 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:64974425 original size:26 final size:26
Alignment explanation
Indices: 64974396--64974448 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
64974386 TTTACAGTTT
64974396 TACCCCTAGGAGTTAAATT-ACCGAAA
1 TACCCCTAGG-GTTAAATTGACCGAAA
*
64974422 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGTTAAATTGACCGAAA
64974448 T
1 T
64974449 GCATGTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGTTAAATTGACCGAAA
Found at i:64976988 original size:10 final size:10
Alignment explanation
Indices: 64976975--64977008 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
64976965 TATATATGAA
*
64976975 ATATGATATG
1 ATATGATATT
64976985 ATATGATATT
1 ATATGATATT
*
64976995 ATATCATATT
1 ATATGATATT
64977005 ATAT
1 ATAT
64977009 TAATTTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (10 bp):
ATATGATATT
Found at i:64982163 original size:22 final size:22
Alignment explanation
Indices: 64982102--64982152 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
64982092 AATATGCAAA
64982102 AGTGCAAATCAAAATGGTGGAC
1 AGTGCAAATCAAAATGGTGGAC
64982124 AGTGCAAATCAAAATGGTGGAC
1 AGTGCAAATCAAAATGGTGGAC
64982146 AGTGCAA
1 AGTGCAA
64982153 GCCAAAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (22 bp):
AGTGCAAATCAAAATGGTGGAC
Found at i:64982178 original size:28 final size:28
Alignment explanation
Indices: 64982146--64982241 Score: 97
Period size: 28 Copynumber: 3.5 Consensus size: 28
64982136 AATGGTGGAC
*
64982146 AGTGCAAGCCAAAGTGGTAGATAGTCCA
1 AGTGCAAGCCAAAGTGGTAGACAGTCCA
* *
64982174 AGTGCAAGCCAAAAAT-GTGGACAGTCCA
1 AGTGCAAGCC-AAAGTGGTAGACAGTCCA
* ** * *
64982202 TGTAAAAGCC-AAGTGGTAAACAATCCA
1 AGTGCAAGCCAAAGTGGTAGACAGTCCA
64982229 AGTGCAAGCCAAA
1 AGTGCAAGCCAAA
64982242 ATAGTGGACA
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
26 3 0.06
27 16 0.31
28 29 0.56
29 4 0.08
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.16
Consensus pattern (28 bp):
AGTGCAAGCCAAAGTGGTAGACAGTCCA
Found at i:64982629 original size:15 final size:15
Alignment explanation
Indices: 64982593--64982635 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
64982583 TTAATTTTGG
*
64982593 AAAGATAATTAAATA
1 AAAGATGATTAAATA
64982608 AAAGATGATTAAATA
1 AAAGATGATTAAATA
64982623 AAAGATGA-TAAAT
1 AAAGATGATTAAAT
64982636 GAATTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 5 0.19
15 22 0.81
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.26
Consensus pattern (15 bp):
AAAGATGATTAAATA
Found at i:64984747 original size:21 final size:20
Alignment explanation
Indices: 64984715--64984754 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
64984705 TATATTTGAT
64984715 ATATGGAGACATGAGAATATG
1 ATATGGAGACATG-GAATATG
64984736 ATATGTGA-ACATGGAATAT
1 ATATG-GAGACATGGAATAT
64984755 ATTTTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 10 0.56
22 2 0.11
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (20 bp):
ATATGGAGACATGGAATATG
Found at i:64986215 original size:23 final size:23
Alignment explanation
Indices: 64986185--64986297 Score: 142
Period size: 23 Copynumber: 5.0 Consensus size: 23
64986175 GGCTTTGCCG
64986185 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
64986208 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* *
64986231 TTCAAGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * * *
64986254 TTCAAGCACCTCATGTGTC--AT
1 ATCAGGCACTTTATGTGTCGTAT
*
64986275 TTCAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
64986297 A
1 A
64986298 CTGATCAGGT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
20 8 0.10
21 10 0.12
22 2 0.02
23 61 0.75
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:64986492 original size:18 final size:19
Alignment explanation
Indices: 64986469--64986508 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
64986459 AATGAATTAT
*
64986469 AAATTGAAATGTGA-ATTG
1 AAATTGAAATATGAGATTG
*
64986487 AAATTGAGATATGAGATTG
1 AAATTGAAATATGAGATTG
64986506 AAA
1 AAA
64986509 GCTTGAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (19 bp):
AAATTGAAATATGAGATTG
Found at i:64990606 original size:20 final size:20
Alignment explanation
Indices: 64990578--64990625 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
64990568 GATTTAGGAT
*
64990578 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TATA
64990597 TTTATCTTTAATTAATTATA
1 TTTATCTTTAATTAATTATA
64990617 TTTATCTTT
1 TTTATCTTT
64990626 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTATA
Found at i:64994293 original size:15 final size:14
Alignment explanation
Indices: 64994273--64994319 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
64994263 GCAACCCAAT
64994273 TTTTATTTTTATTTA
1 TTTTATTTTTA-TTA
*
64994288 TTTTA-TCTTATTA
1 TTTTATTTTTATTA
*
64994301 TCTTATTATTTATTA
1 TTTTATT-TTTATTA
64994316 TTTT
1 TTTT
64994320 CAGATATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 7 0.27
14 5 0.19
15 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:64995236 original size:11 final size:10
Alignment explanation
Indices: 64995213--64995249 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
64995203 ATTCTATAAC
64995213 AAAAAGAAAA
1 AAAAAGAAAA
64995223 AAAAAGAAAGA
1 AAAAAGAAA-A
64995234 AAAAAGAAAA
1 AAAAAGAAAA
64995244 AAAAAG
1 AAAAAG
64995250 TCATATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:64995239 original size:7 final size:7
Alignment explanation
Indices: 64995213--64995245 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
64995203 ATTCTATAAC
64995213 AAAAAGA
1 AAAAAGA
64995220 AAAAA-A
1 AAAAAGA
64995226 AAGAAAGA
1 AA-AAAGA
64995234 AAAAAGA
1 AAAAAGA
64995241 AAAAA
1 AAAAA
64995246 AAAGTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 3 0.12
7 18 0.75
8 3 0.12
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:64998876 original size:80 final size:80
Alignment explanation
Indices: 64998792--64998940 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64998782 TATGGTAACC
* * * *
64998792 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64998856 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64998872 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64998937 CCGG
66 CCGG
64998941 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64998882 original size:40 final size:38
Alignment explanation
Indices: 64998833--64998940 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64998823 ATCACGATTT
*
64998833 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64998873 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64998913 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64998941 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:65006994 original size:80 final size:80
Alignment explanation
Indices: 65006910--65007058 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
65006900 TATGGTAACC
* * * *
65006910 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
65006974 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
65006990 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
65007055 CCGG
66 CCGG
65007059 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:65007000 original size:40 final size:38
Alignment explanation
Indices: 65006951--65007058 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
65006941 ATCACGATTT
*
65006951 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
65006991 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
65007031 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
65007059 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:65013655 original size:16 final size:17
Alignment explanation
Indices: 65013623--65013657 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
65013613 CAACCAAGTT
65013623 CACATGTTTTTGCCCAC
1 CACATGTTTTTGCCCAC
65013640 CACATGTTTTTG-CCAC
1 CACATGTTTTTGCCCAC
65013656 CA
1 CA
65013658 ATTGACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.20, C:0.34, G:0.11, T:0.34
Consensus pattern (17 bp):
CACATGTTTTTGCCCAC
Found at i:65014979 original size:39 final size:40
Alignment explanation
Indices: 65014935--65015099 Score: 140
Period size: 39 Copynumber: 4.2 Consensus size: 40
65014925 CGGAATGTAA
65014935 CCGGAT-TAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
65014974 CCGGATAGAGTAACTCGCACGAATGCCTTC-GGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
65015013 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
65015053 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65015092 CCGGATAT
1 CCGGATAT
65015100 CATTCAATTT
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 52 0.51
40 49 0.49
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65017680 original size:47 final size:47
Alignment explanation
Indices: 65017611--65017815 Score: 302
Period size: 47 Copynumber: 4.4 Consensus size: 47
65017601 CCCTTCGGGA
* * * *
65017611 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65017658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65017705 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
65017752 TTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65017799 TTTACCACATATATACA
1 CTTATCACATATATACA
65017816 TATCACACAT
Statistics
Matches: 143, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 143 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:65017865 original size:48 final size:48
Alignment explanation
Indices: 65017789--65017972 Score: 332
Period size: 48 Copynumber: 3.8 Consensus size: 48
65017779 CATCACATGG
*
65017789 GCCATTAGGCTTTACCACATATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTACCAC--ATATACATATCACACATATATTTCACATTA
65017839 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
*
65017887 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
65017935 GCCATTCGGCTTTACCACATATACATATCACACATATA
1 GCCATTCGGCTTTACCACATATACATATCACACATATA
65017973 CTTATTTATC
Statistics
Matches: 132, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
48 115 0.87
50 17 0.13
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
Found at i:65017870 original size:94 final size:97
Alignment explanation
Indices: 65017640--65017966 Score: 340
Period size: 94 Copynumber: 3.4 Consensus size: 97
65017630 TTCACATCCA
* * * * *
65017640 TCACATTGGCCACTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 TCACATTAGCCATTCGGCTTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
* * *
65017705 CTTATCACATATATACACT-T-TCACAT-TCA--
66 TTTACCACATATATACA-TATCACACATAT-ATT
* * * * *
65017734 TCACATTGGCCATTGGGCTTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 TCACATTAGCCATTCGGCTTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
65017799 TTTACCACATATATACATATCACACATATATT
66 TTTACCACATATATACATATCACACATATATT
**
65017831 TCACATTAGCCATTCGGCTTTA-C-CACATATACA-TATCACACATAT-ATTTCACATTAGCCAT
1 TCACATTAGCCATTCGGCTTTATCACACATATACACTAT--CACAT-TCA--TCACATCGGCCAT
*
65017892 TCGGCTTTACCAC--ATATACATATCACACATATATT
61 TAGGCTTTACCACATATATACATATCACACATATATT
*
65017927 TCACATCAGCCATTCGGCTTTA-C-CACATATACA-TATCACA
1 TCACATTAGCCATTCGGCTTTATCACACATATACACTATCACA
65017967 CATATACTTA
Statistics
Matches: 206, Mismatches: 17, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
93 1 0.00
94 81 0.39
95 15 0.07
96 65 0.32
97 21 0.10
98 23 0.11
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (97 bp):
TCACATTAGCCATTCGGCTTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
TTTACCACATATATACATATCACACATATATT
Found at i:65021659 original size:40 final size:39
Alignment explanation
Indices: 65021602--65021753 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 39
65021592 CGGAGTTTAA
* * * *
65021602 CCGGATATAGCTACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGTTATAG-TACTCGTACAAATGCCTTCGGGACATAAC
*
65021642 CCGGTTATAGTAGCTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTA-CTCGTACAAATGCCTTCGGGACATAAC
* * **
65021682 CCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGG-TTATAGT-ACTCGTACAAATGCCTTCGGGA-CATAAC
*
65021722 CCGGATT-TAGTAACTCGCACAAATGCCTTCGG
1 CCGG-TTATAGT-ACTCGTACAAATGCCTTCGG
65021754 ATCTTAGTCC
Statistics
Matches: 99, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
39 5 0.05
40 90 0.91
41 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGTTATAGTACTCGTACAAATGCCTTCGGGACATAAC
Found at i:65021754 original size:40 final size:40
Alignment explanation
Indices: 65021621--65021806 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
65021611 GCTACTCGTT
* * * *
65021621 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
65021661 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
65021701 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
65021741 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
65021782 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65021807 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65026120 original size:2 final size:2
Alignment explanation
Indices: 65026113--65026146 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
65026103 TTTTTACGTT
65026113 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65026147 ACATAACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:65027799 original size:43 final size:43
Alignment explanation
Indices: 65027744--65027943 Score: 182
Period size: 43 Copynumber: 4.7 Consensus size: 43
65027734 ATATCAAACA
* * *
65027744 ATGCCAAC-GTCCCAGACGTGGTCTTACATTTTATATCATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGTAACA-CATATCG
** * *
65027787 ATGCC-ACTGTCCCAGACACGGTCTTACACG-AATCAAATA-CG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGTAA-CACATATCG
* * * *
65027828 ATGCCGA-TGTCCCAGACATGGTCTTAC-TCGCAACCACATATCA
1 ATGCCAACTGTCCCAGACGTGGTCTTACAT-GTAA-CACATATCG
65027871 ATGCCAA-TGTCCCAGACGTGGTCTTACATGTAAACACATATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGT-AACAC--ATATCG
65027916 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCCAACTGTCCCAGACGTGGTCTTACA
65027944 CGAAAACACA
Statistics
Matches: 130, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
41 27 0.21
42 14 0.11
43 54 0.42
44 3 0.02
45 32 0.25
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACATGTAACACATATCG
Found at i:65027885 original size:84 final size:88
Alignment explanation
Indices: 65027780--65027942 Score: 217
Period size: 84 Copynumber: 1.9 Consensus size: 88
65027770 CATTTTATAT
* * * * *
65027780 CATATCGATGCCACTGTCCCAGACACGGTCTTACACG-AATCA-A-ATA-CGATGCCGATGTCCC
1 CATATCAATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATATCGATGCCAACGTCCC
65027841 AGACATGGTCTTACTCGCAACCA
66 AGACATGGTCTTACTCGCAACCA
** *
65027864 CATATCAATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATATCGATGCCAACGTCCC
1 CATATCAATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATATCGATGCCAACGTCCC
*
65027929 AGACGTGGTCTTAC
66 AGACATGGTCTTAC
65027943 ACGAAAACAC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 32 0.48
85 4 0.06
86 1 0.02
87 3 0.05
88 26 0.39
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (88 bp):
CATATCAATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATATCGATGCCAACGTCCC
AGACATGGTCTTACTCGCAACCA
Found at i:65035873 original size:53 final size:54
Alignment explanation
Indices: 65035786--65035993 Score: 211
Period size: 53 Copynumber: 3.9 Consensus size: 54
65035776 TTTCTTTTTA
* * *
65035786 AACTTACCATTTCCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
65035839 AACTCACCATTGCCATGCCTTGGCATGGTGTTACATGGGATCTTTCCCTTATAG
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
** * ** * * * *
65035893 TAGTTTATCAATGCCATATCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
65035948 AATTTACCAATGCCATTCCTTGGCATGGTCTTACTTGGTATCCTTG
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
65035994 AACCCTAATG
Statistics
Matches: 123, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 39 0.32
55 39 0.32
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:65035992 original size:54 final size:54
Alignment explanation
Indices: 65035804--65035993 Score: 213
Period size: 54 Copynumber: 3.5 Consensus size: 54
65035794 ATTTCCATGT
* * * *
65035804 CTTGGCATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGC
1 CTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAATGCCATTC
* * * * * *
65035857 CTTGGCATGGTGTTACATGGGATCTTTCCCTTATAGTAGTTTATCAATGCCATAT-
1 CTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG-AATTTACCAATGCCAT-TC
* * * *
65035912 CTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAATTTACCAATGCCATTC
1 CTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAATGCCATTC
*
65035966 CTTGGCATGGTCTTACTTGGTATCCTTG
1 CTTGGCATGGTCTTACATGGTATCCTTG
65035994 AACCCTAATG
Statistics
Matches: 109, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 31 0.28
54 39 0.36
55 39 0.36
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (54 bp):
CTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAATGCCATTC
Found at i:65041143 original size:23 final size:22
Alignment explanation
Indices: 65041093--65041144 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
65041083 CAGCTCGATG
* *
65041093 AGCTTACAATTTAGCTCATTAG
1 AGCTTACAATTTAGCTCAATAC
* *
65041115 AACTTACCATTTCAGCTCAATAC
1 AGCTTACAATTT-AGCTCAATAC
65041138 AGCTTAC
1 AGCTTAC
65041145 TGTCCATCAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (22 bp):
AGCTTACAATTTAGCTCAATAC
Found at i:65041156 original size:25 final size:26
Alignment explanation
Indices: 65041126--65041182 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
65041116 ACTTACCATT
*
65041126 TCAGCTCAATA-CAGCTTACTGTCCA
1 TCAGCTCAAGAGCAGCTTACTGTCCA
* *
65041151 TCAGCTCAAGAGGAGCTTACTGTTCA
1 TCAGCTCAAGAGCAGCTTACTGTCCA
65041177 T-AGCTC
1 TCAGCTC
65041183 GAAAGAGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TCAGCTCAAGAGCAGCTTACTGTCCA
Found at i:65043972 original size:40 final size:40
Alignment explanation
Indices: 65043912--65044075 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 40
65043902 CGGGATTCAA
* **
65043912 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAAC
* *** * *
65043952 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAAC
*
65043992 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAAC
* * * * * *
65044032 CTGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAAC
65044072 CCGG
1 CCGG
65044076 GTATCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAAC
Found at i:65044059 original size:80 final size:80
Alignment explanation
Indices: 65043912--65044075 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
65043902 CGGGATTCAA
* * ** * *
65043912 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
65043977 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * * *
65043992 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCTGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
65044056 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
65044072 CCGG
1 CCGG
65044076 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:65053614 original size:39 final size:39
Alignment explanation
Indices: 65053569--65053689 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
65053559 AAGCAAGACA
* *
65053569 CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
65053608 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
65053647 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65053686 CTGG
1 CTGG
65053690 TAACATAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65057740 original size:48 final size:48
Alignment explanation
Indices: 65057671--65057834 Score: 301
Period size: 48 Copynumber: 3.4 Consensus size: 48
65057661 GATAAATAAG
* *
65057671 TATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTGATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
65057719 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
65057767 TATATGTGTGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
65057815 TATATGTGTGATATGTATAT
1 TATATGTGTGATATGTATAT
65057835 ATGTGATAAA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (48 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:65057870 original size:96 final size:96
Alignment explanation
Indices: 65057674--65057964 Score: 305
Period size: 96 Copynumber: 3.1 Consensus size: 96
65057664 AAATAAGTAT
* *
65057674 ATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTGATGTGAAATATATGTGTGATATG--TAT
1 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
* * *
65057737 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT-A
66 ATGTGATAAAGCCTAATGGCCAATGTG--ATGA
*
65057769 TATGTGTGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 -ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
* *
65057834 TATGTGATAAAGCCTAGTGGCCCATGTGATGA
65 TATGTGATAAAGCCTAATGGCCAATGTGATGA
* * * * *
65057866 A--TGTGAAAGTGCATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-A--TGTGAAAGTG
1 ATGTGTGATA-TGTATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATATGTGTGATA-TG
* *
65057924 TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
61 TATATATGTGATAAAGCCTAATGGCCAATGTGATGA
65057960 ATGTG
1 ATGTG
65057965 AAAGTGTATA
Statistics
Matches: 168, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
93 6 0.04
94 42 0.25
95 12 0.07
96 64 0.38
97 19 0.11
98 25 0.15
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (96 bp):
ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
ATGTGATAAAGCCTAATGGCCAATGTGATGA
Found at i:65057902 original size:47 final size:47
Alignment explanation
Indices: 65057828--65058032 Score: 302
Period size: 47 Copynumber: 4.4 Consensus size: 47
65057818 ATGTGTGATA
* * * *
65057828 TGTATATATGTGATAAAGCCTAGTGGCCCATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
65057875 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
65057922 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * *
65057969 TGTATATATGTGATAAGGCTGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
65058016 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
65058033 TCCCGAAGCG
Statistics
Matches: 142, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:65060280 original size:29 final size:29
Alignment explanation
Indices: 65060218--65060320 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
65060208 GTGACGAGAT
* * *
65060218 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
65060247 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
65060276 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
65060305 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65060321 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:65067264 original size:29 final size:29
Alignment explanation
Indices: 65067202--65067304 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
65067192 GTGACGAGAT
* * *
65067202 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
65067231 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
65067260 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
65067289 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65067305 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:65069752 original size:38 final size:38
Alignment explanation
Indices: 65069661--65069735 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
65069651 AATTCGAGTT
* * *
65069661 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGGG
65069699 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
65069736 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
Found at i:65069844 original size:40 final size:40
Alignment explanation
Indices: 65069789--65070230 Score: 758
Period size: 40 Copynumber: 11.1 Consensus size: 40
65069779 AGGTCTCGAC
65069789 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
65069829 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
65069869 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
65069909 GATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
65069949 GATATATCCGAGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
65069989 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
65070029 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
65070069 GATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
65070109 GATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
65070149 GATGTATCCGAGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* ** * *
65070189 GATGTATCCGTGCTAAACCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
65070229 GA
1 GA
65070231 CGTGTATTCG
Statistics
Matches: 384, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 384 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:65077660 original size:39 final size:39
Alignment explanation
Indices: 65077615--65077735 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
65077605 AAGCAAGACA
* *
65077615 CTGGAAATGTATCCGAGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65077654 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
65077693 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65077732 CTGG
1 CTGG
65077736 TAACAAAATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65079749 original size:24 final size:24
Alignment explanation
Indices: 65079717--65079923 Score: 360
Period size: 24 Copynumber: 8.6 Consensus size: 24
65079707 AATCTCAAAT
65079717 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
65079741 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
65079765 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
65079789 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
65079813 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
65079837 GTACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
65079861 GCACTATGTGTGTGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
65079885 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
65079909 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
65079924 ACATAATAAG
Statistics
Matches: 171, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 171 1.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.38
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:65084105 original size:40 final size:40
Alignment explanation
Indices: 65084050--65084213 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
65084040 TGAATGATAC
* * *
65084050 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
65084090 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
65084130 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
65084170 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
65084210 CCGG
1 CCGG
65084214 TTAAATCCGA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:65092728 original size:30 final size:30
Alignment explanation
Indices: 65092692--65092822 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
65092682 GACAAGATTG
* * * * *
65092692 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
65092722 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
65092750 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
65092780 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
65092809 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65092823 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:65092783 original size:58 final size:58
Alignment explanation
Indices: 65092692--65092822 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
65092682 GACAAGATTG
* * * * * *
65092692 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
65092750 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
65092809 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65092823 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:65100296 original size:30 final size:31
Alignment explanation
Indices: 65100209--65100340 Score: 168
Period size: 30 Copynumber: 4.5 Consensus size: 31
65100199 GACAAGATTG
* * * * *
65100209 GCACTAAGTGTGCGGGTTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTCTGAAAATTATATA
*
65100240 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAGTCTGAAAATTATATA
65100268 GCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGTCTGAAAATTATATA
65100298 GCACTAAGTGTGCGAG-CTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTCTGAAAATTATATA
65100327 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65100341 GATTCACTAT
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 31 0.33
31 18 0.19
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (31 bp):
GCACTAAGTGTGCGAGTCTGAAAATTATATA
Found at i:65100325 original size:59 final size:59
Alignment explanation
Indices: 65100209--65100340 Score: 169
Period size: 59 Copynumber: 2.2 Consensus size: 59
65100199 GACAAGATTG
* * * * * *
65100209 GCACTAAGTGTGCGGGTTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGAATATATA
*
65100268 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTGAAAATTATACAGCACTAAGTGTGCGAGTCTG--AATATATA
65100327 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65100341 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
57 2 0.03
58 26 0.41
59 36 0.56
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGTCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGAATATATA
Found at i:65102140 original size:40 final size:40
Alignment explanation
Indices: 65102084--65102245 Score: 175
Period size: 40 Copynumber: 4.0 Consensus size: 40
65102074 TGAATGATAC
* * *
65102084 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
65102124 CCGGGCTAAGATCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
65102164 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
65102204 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
65102244 CC
1 CC
65102246 AGTTAAATCC
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 91 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:65108948 original size:24 final size:24
Alignment explanation
Indices: 65108916--65109002 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
65108906 AATCTCAAAT
65108916 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
65108940 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
65108964 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
65108988 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
65109003 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:65108968 original size:48 final size:48
Alignment explanation
Indices: 65108916--65109024 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
65108906 AATCTCAAAT
** *
65108916 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
65108964 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
65109012 GCACTATGTGTGC
1 GCACTATGTGTGC
65109025 AAGTTTGGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:65109015 original size:24 final size:24
Alignment explanation
Indices: 65108916--65109024 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
65108906 AATCTCAAAT
*
65108916 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
65108940 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
65108964 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
65108988 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
65109012 GCACTATGTGTGC
1 GCACTATGTGTGC
65109025 AAGTTTGGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:65111699 original size:26 final size:26
Alignment explanation
Indices: 65111663--65111750 Score: 149
Period size: 26 Copynumber: 3.4 Consensus size: 26
65111653 GAGTGTTACA
*
65111663 AAGCCTTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
**
65111689 AAGCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
65111715 AAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
65111741 AAGCCCTTTT
1 AAGCCCTTTT
65111751 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
AAGCCCTTTTCAATAAACTGGGGCAT
Found at i:65111825 original size:20 final size:20
Alignment explanation
Indices: 65111800--65111874 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
65111790 TTATGAATTC
*
65111800 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
65111820 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65111840 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
65111860 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
65111875 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65111831 original size:11 final size:11
Alignment explanation
Indices: 65111800--65111855 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
65111790 TTATGAATTC
65111800 ATCATGTGCAT
1 ATCATGTGCAT
* *
65111811 TTCA--TACAT
1 ATCATGTGCAT
65111820 ATCATGTGCAT
1 ATCATGTGCAT
*
65111831 ATCA--TACAT
1 ATCATGTGCAT
65111840 ATCATGTGCAT
1 ATCATGTGCAT
65111851 ATCAT
1 ATCAT
65111856 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:65111872 original size:9 final size:10
Alignment explanation
Indices: 65111817--65111873 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
65111807 GCATTTCATA
65111817 CATATCATGT
1 CATATCATGT
*
65111827 GCATATCAT-A
1 -CATATCATGT
65111837 CATATCATGT
1 CATATCATGT
*
65111847 GCATATCATAT
1 -CATATCATGT
65111858 CA-ATCATGT
1 CATATCATGT
65111867 -ATATCAT
1 CATATCAT
65111874 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:65118646 original size:26 final size:28
Alignment explanation
Indices: 65118599--65118656 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
65118589 GATTTTTGAC
*
65118599 AAAAATGTCAAAAAGGGATTAAT-TTGT
1 AAAAATGTCAAAAAGGGATTAATAGTGT
*
65118626 AAAAATGT-AAAATGTGG-TTAATAGTGT
1 AAAAATGTCAAAAAG-GGATTAATAGTGT
65118653 AAAA
1 AAAA
65118657 TAATGAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (28 bp):
AAAAATGTCAAAAAGGGATTAATAGTGT
Found at i:65119219 original size:24 final size:24
Alignment explanation
Indices: 65119189--65119277 Score: 96
Period size: 24 Copynumber: 3.8 Consensus size: 24
65119179 TATCGATAGA
65119189 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
* *
65119213 TCAGCTCGTATGAGCTTA-T-TGT
1 TCAGCTCGTAAGAGCTTACTGTTT
* *
65119235 TCAGCTCGTTAGAGCTTACCGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
*
65119259 T-AGCTC-AATAGAGCTTACT
1 TCAGCTCGTA-AGAGCTTACT
65119278 ATCCATCAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
22 18 0.34
23 15 0.28
24 20 0.38
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTT
Found at i:65119240 original size:22 final size:24
Alignment explanation
Indices: 65119189--65119253 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 24
65119179 TATCGATAGA
* *
65119189 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTATGAGCTTACTGTGT
65119213 TCAGCTCGTATGAGCTTA-T-TGT
1 TCAGCTCGTATGAGCTTACTGTGT
65119235 TCAGCTCGT-TAGAGCTTAC
1 TCAGCTCGTAT-GAGCTTAC
65119254 CGTTTTAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
21 1 0.03
22 18 0.49
23 1 0.03
24 17 0.46
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTATGAGCTTACTGTGT
Found at i:65121891 original size:21 final size:22
Alignment explanation
Indices: 65121857--65121897 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
65121847 AAATACCATG
* *
65121857 CATCAATCCCTCATCCCTCATC
1 CATCAATCCATCATACCTCATC
65121879 CATC-ATCCATCATACCTCA
1 CATCAATCCATCATACCTCA
65121898 CATCTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.27, C:0.46, G:0.00, T:0.27
Consensus pattern (22 bp):
CATCAATCCATCATACCTCATC
Found at i:65131371 original size:50 final size:50
Alignment explanation
Indices: 65131310--65131599 Score: 323
Period size: 50 Copynumber: 5.7 Consensus size: 50
65131300 AAGCTCTCTG
* *
65131310 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAGCAATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTA
* * * *
65131360 GTACACGTAGTAGCTTGTACTTAGTACTACACATGTGACCTAACCATC-A
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTA
* * * * * * **
65131409 GATACACGTAGTAGCCTGCACTTAGTACTACAGACGTGATCGAAGCTATCGG
1 G-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTA
** * * *
65131461 GTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTA
*
65131511 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AACCGTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-TA
* *
65131561 TTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
65131600 TTCTCACAAC
Statistics
Matches: 201, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
49 5 0.02
50 124 0.62
51 37 0.18
52 35 0.17
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTA
Found at i:65131516 original size:101 final size:100
Alignment explanation
Indices: 65131306--65131597 Score: 327
Period size: 101 Copynumber: 2.9 Consensus size: 100
65131296 ATCGAAGCTC
* * *
65131306 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAGCAATCTAGTACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAGCAATCGAGTACACATAGT
* ** * *
65131371 AGCTTGTACTTAGTACTACACATGTGACCTAACCA
66 AGCCTACACTTAGTACTACACATGCGACCTAACAA
* * * * * * * **
65131406 TCAGATACACGTAGTAGCCTGCACTTAGTACTACAGACGTGATCGAAGCTATCGGGTATGCATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAAGCAATCGAGTACACATAG
65131471 TAGCCTACACTTAGTACTACACATGCGACCTAACAA
65 TAGCCTACACTTAGTACTACACATGCGACCTAACAA
* * *
65131507 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--AACCGTATTAAACACA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAGCAATCG-AGT--ACACA
* *
65131570 TAGTAGCCTGCACATAGTACTACACATG
62 TAGTAGCCTACACTTAGTACTACACATG
65131598 TGTTCTCACA
Statistics
Matches: 156, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
99 3 0.02
100 40 0.26
101 84 0.54
102 29 0.19
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (100 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAGCAATCGAGTACACATAGT
AGCCTACACTTAGTACTACACATGCGACCTAACAA
Found at i:65131544 original size:26 final size:26
Alignment explanation
Indices: 65131512--65131596 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
65131502 AACAATCTGG
*
65131512 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
** * *
65131538 TACACAT-GT-GACCTAAAACCGTATTA-
1 TACACATAGTAG-CCT-GCA-CATAGTAC
*
65131564 AACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
65131590 TACACAT
1 TACACAT
65131597 GTGTTCTCAC
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
24 1 0.02
25 10 0.23
26 21 0.49
27 10 0.23
28 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:65131545 original size:151 final size:151
Alignment explanation
Indices: 65131296--65131593 Score: 411
Period size: 151 Copynumber: 2.0 Consensus size: 151
65131286 CACCCTTGTA
* * * * *
65131296 ATCGAAGCTCTCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAGCAATCTAG
1 ATCGAAGCTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTAG
* * * *
65131361 TACACGTAGTAGCTTGTACTTAGTACTACACATGTGACCT-AACC-ATCAGATACACGTAGTAGC
66 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAACCGATCA-A-ACACATAGTAGC
*
65131424 CTGCACTTAGTACTACAGACGTG
129 CTGCACATAGTACTACAGACGTG
** * *
65131447 ATCGAAGCTATCGGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGG
1 ATCGAAGCTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTAG
*
65131512 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACCGTATTAAACACATAGTAGC
66 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AAACCG-ATCAAACACATAGTAGC
65131577 CTGCACATAGTACTACA
129 CTGCACATAGTACTACA
65131594 CATGTGTTCT
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
151 93 0.73
153 31 0.24
154 1 0.01
155 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (151 bp):
ATCGAAGCTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTAG
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAACCGATCAAACACATAGTAGCCT
GCACATAGTACTACAGACGTG
Found at i:65137185 original size:40 final size:40
Alignment explanation
Indices: 65137130--65137332 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
65137120 TGGATGATAA
* * *
65137130 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
65137170 CCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65137210 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65137250 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
65137290 TCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
65137329 CCGG
1 CCGG
65137333 TTAAATCCTG
Statistics
Matches: 146, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 17 0.12
40 127 0.87
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65143325 original size:2 final size:2
Alignment explanation
Indices: 65143318--65143346 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
65143308 GAGACTAGTC
65143318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65143347 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65149882 original size:32 final size:33
Alignment explanation
Indices: 65149824--65149890 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
65149814 TTGCCGAGCG
65149824 ATACAAAAAATTCAAGGAATGCTGGTAAGGAAC
1 ATACAAAAAATTCAAGGAATGCTGGTAAGGAAC
* *
65149857 ATACAAAAAATTTAAGTAATG-TGGTAAGGAAC
1 ATACAAAAAATTCAAGGAATGCTGGTAAGGAAC
65149889 AT
1 AT
65149891 TGCAAAGCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.22
Consensus pattern (33 bp):
ATACAAAAAATTCAAGGAATGCTGGTAAGGAAC
Found at i:65152654 original size:17 final size:17
Alignment explanation
Indices: 65152571--65152658 Score: 72
Period size: 18 Copynumber: 5.1 Consensus size: 17
65152561 ATTTTAAAAA
65152571 TTTATTTTTAGTTTAATT
1 TTTATTTTTA-TTTAATT
* *
65152589 TTTATATTT-TTTCATT
1 TTTATTTTTATTTAATT
* *
65152605 TTTATATCTATCTTTAA-T
1 TTTAT-T-TTTATTTAATT
* *
65152623 TTTAATTTAAGTTTAATT
1 TTTATTTTTA-TTTAATT
65152641 TTTATTTTTATTTAATT
1 TTTATTTTTATTTAATT
65152658 T
1 T
65152659 GTTTATGTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
16 12 0.22
17 14 0.26
18 24 0.44
19 4 0.07
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTATTTTTATTTAATT
Found at i:65153340 original size:9 final size:9
Alignment explanation
Indices: 65153326--65153351 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
65153316 AAAATGGACA
65153326 TGAAATAGG
1 TGAAATAGG
65153335 TGAAATAGG
1 TGAAATAGG
65153344 TGAAATAG
1 TGAAATAG
65153352 AATATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (9 bp):
TGAAATAGG
Found at i:65154274 original size:42 final size:42
Alignment explanation
Indices: 65154228--65154376 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 42
65154218 TGAGTTTACG
*
65154228 TGTAAGACCATATCTAGGATATGGCA-CCATTATGAGATTTCA
1 TGTAAGACCATATCTAGGATATGGCATCGA-TATGAGATTTCA
* * * * *
65154270 TGTAAGACCATGTCTAGGACATTGCATCGATATGAGA-ATCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
* * * **
65154311 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGATTTCA
* *
65154354 TGTAAAACCATATCTGGGATATG
1 TGTAAGACCATATCTAGGATATG
65154377 ACATTAGTAT
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
41 18 0.21
42 47 0.55
43 21 0.24
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
Found at i:65155884 original size:41 final size:40
Alignment explanation
Indices: 65155829--65155944 Score: 135
Period size: 41 Copynumber: 2.8 Consensus size: 40
65155819 TGATAAAACG
65155829 TGTAAGACCATGTCTGGGACATTGGCATTGTATATGACT-CA
1 TGTAAGACCATGTCTGGGACA-TGGCATTGTATATGA-TACA
* **
65155870 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATATGATAACA
1 TGTAAGACCATGTCTGGGACA-TGGCAT-TGTATATGAT-ACA
* *
65155913 TGTAAGACCATATCTGGGATATGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATGGCATTGTAT
65155945 GAGCTATGTG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 30 0.48
42 13 0.21
43 20 0.32
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (40 bp):
TGTAAGACCATGTCTGGGACATGGCATTGTATATGATACA
Found at i:65157433 original size:22 final size:22
Alignment explanation
Indices: 65157408--65157461 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
65157398 TGAGGCAAAG
65157408 CCTCCAGTACGTGGTCAAGCCA
1 CCTCCAGTACGTGGTCAAGCCA
65157430 CCTCCAGTACGTGGTCAAGCCA
1 CCTCCAGTACGTGGTCAAGCCA
*
65157452 CTTCCAGTAC
1 CCTCCAGTAC
65157462 TTCCTCCATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.20
Consensus pattern (22 bp):
CCTCCAGTACGTGGTCAAGCCA
Found at i:65165158 original size:46 final size:46
Alignment explanation
Indices: 65165108--65165283 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
65165098 TGGTTGAGCA
*
65165108 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
65165154 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTGACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA--A--CG
65165201 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
65165247 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65165284 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 6 0.05
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:65165264 original size:93 final size:93
Alignment explanation
Indices: 65165105--65165276 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65165095 GGATGGTTGA
* *
65165105 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65165170 TGAGTCCGAGTTCGTGAGATGTGACTAG
66 TGAGTCCGAGTTCGTGAGATGTGACTAG
*
65165198 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65165263 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65165277 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTGACTAG
Found at i:65172114 original size:31 final size:31
Alignment explanation
Indices: 65172073--65172136 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
65172063 CCTTTTCATA
* *
65172073 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
65172104 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
65172135 TT
1 TT
65172137 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:65172381 original size:24 final size:24
Alignment explanation
Indices: 65172344--65172424 Score: 135
Period size: 24 Copynumber: 3.3 Consensus size: 24
65172334 CTGGAGGCCT
*
65172344 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTCAATAACTGGGGCAAA
65172369 AGCCCTTTCAATAACTGGGGCAAA
1 AGCCCTTTCAATAACTGGGGCAAA
*
65172393 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTCAATAACTGGGGCAAA
65172417 AGCCCTTT
1 AGCCCTTT
65172425 TTCACTTCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
24 50 0.93
25 4 0.07
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (24 bp):
AGCCCTTTCAATAACTGGGGCAAA
Found at i:65172500 original size:20 final size:20
Alignment explanation
Indices: 65172475--65172535 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
65172465 TTATGATTAC
65172475 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65172495 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
65172515 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
65172535 A
1 A
65172536 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65172610 original size:25 final size:25
Alignment explanation
Indices: 65172578--65172625 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65172568 ATACACAAAC
* * *
65172578 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
65172603 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
65172626 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:65173882 original size:27 final size:27
Alignment explanation
Indices: 65173864--65174277 Score: 389
Period size: 27 Copynumber: 15.6 Consensus size: 27
65173854 AGGGTATTTT
*
65173864 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
65173891 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
65173918 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
65173945 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
65173972 GGTAATTATGTAAATC-GGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
65173998 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
65174025 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
65174052 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
* *
65174079 GGTAATTCTGTAAATC----G--AGAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * ** *
65174100 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
65174127 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
65174154 AGTAATTCTATAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
65174181 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
* * *
65174208 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
65174235 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
*
65174262 GGTAATTCTGTAAATC
1 AGTAATTCTGTAAATC
65174278 GGGAGTACTT
Statistics
Matches: 332, Mismatches: 42, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
21 16 0.05
23 1 0.00
25 1 0.00
26 25 0.08
27 286 0.86
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:65174232 original size:183 final size:182
Alignment explanation
Indices: 65173919--65174278 Score: 560
Period size: 183 Copynumber: 2.0 Consensus size: 182
65173909 GGGTAAAACA
* * * * *
65173919 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTATATA
** *** *
65173984 AATCGGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
66 AATAAGGGTAAAACAATAATTATGTAAATGAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
65174049 AATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGACG
131 AATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGACG
* *
65174101 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTATATA
* *
65174166 AATTAAGGGTAAAACAATAATTCTGTAAACTGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGT
66 AA-TAAGGGTAAAACAATAATTATGTAAA-TGAGGGGTAAAACGGTAATTCTATAAATCGAGGGT
65174230 AAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
129 AAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
65174279 GGAGTACTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
182 60 0.37
183 99 0.61
184 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (182 bp):
GTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTATATA
AATAAGGGTAAAACAATAATTATGTAAATGAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
AATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGACG
Found at i:65174278 original size:54 final size:54
Alignment explanation
Indices: 65173864--65174278 Score: 474
Period size: 54 Copynumber: 7.8 Consensus size: 54
65173854 AGGGTATTTT
* * * *
65173864 AGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* *
65173918 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * *
65173972 GGTAATTATGTAAATCG-GGGTAAAATGGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAAC
* * **
65174025 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC
* * **
65174079 GGTAATTCTGTAAATCGA--G----ACGGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * **
65174127 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* *
65174181 AATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
65174235 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
65174279 GGAGTACTTT
Statistics
Matches: 312, Mismatches: 37, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
48 39 0.12
49 1 0.00
50 1 0.00
52 2 0.01
53 48 0.15
54 220 0.71
55 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65174295 original size:81 final size:80
Alignment explanation
Indices: 65173865--65174278 Score: 486
Period size: 81 Copynumber: 5.2 Consensus size: 80
65173855 GGGTATTTTA
* * * * *
65173865 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
65173930 AATCGAGGGTAAAATG
66 AAT-GAGGGTAAAACG
* ** *
65173946 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTAAAATGGTAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
65174010 AATTAGGGGTAAAACG
66 AATGA-GGGTAAAACG
* ** *
65174026 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGT
65174090 AAATCGA--G----ACG
65 AAAT-GAGGGTAAAACG
* ** * *
65174101 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
65174166 AATTAAGGGTAAAACA
66 AA-TGAGGGTAAAACG
* *
65174182 ATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
65174246 AAACTGAGGGTAAAACG
65 AAA-TGAGGGTAAAACG
65174263 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
65174279 GGAGTACTTT
Statistics
Matches: 281, Mismatches: 38, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
75 62 0.22
76 2 0.01
77 1 0.00
79 3 0.01
80 67 0.24
81 144 0.51
82 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATGAGGGTAAAACG
Found at i:65177579 original size:41 final size:41
Alignment explanation
Indices: 65177524--65177634 Score: 145
Period size: 41 Copynumber: 2.7 Consensus size: 41
65177514 TGATAAAATG
*
65177524 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGACT-CA
1 TGTAAGACCATGTCTGGGATA-TGGCATCGATATATGA-TACA
*
65177565 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATATGATAACA
1 TGTAAGACCATGTCTGGGATA-TGGCATCGATATATGAT-ACA
*
65177608 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGATATGGCAT
65177635 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 28 0.45
42 13 0.21
43 21 0.34
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGATATGGCATCGATATATGATACA
Found at i:65181848 original size:43 final size:42
Alignment explanation
Indices: 65181751--65181947 Score: 313
Period size: 43 Copynumber: 4.6 Consensus size: 42
65181741 CCGGCATTAC
* *
65181751 GCCTGCTAGGCATGAAGGCCCAAATACACATCACGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACGGCACGAA
* *
65181793 GCCTACTAGGCACGAAGGCCCGAATACACATCATCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACGAA
*
65181836 GCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCAC-GGCACGAA
*
65181879 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACGAA
65181922 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
65181948 TAATACCAGC
Statistics
Matches: 142, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
42 31 0.22
43 110 0.77
44 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.12
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACGGCACGAA
Found at i:65181996 original size:38 final size:38
Alignment explanation
Indices: 65181945--65182160 Score: 267
Period size: 38 Copynumber: 5.7 Consensus size: 38
65181935 GAAGGCCCGA
* * * *
65181945 ATATAATACCAGCACTAGGCCTGCAGGATTTAACCCAG
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
* ** *
65181983 ATATATTAACAGCACAAAGCCTATGGGATTTAACCCTG
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
*
65182021 ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
65182058 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCC-G
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
* * *
65182095 AATATATTACCAGCACGAAGCGTACGGGATTTAACCCAG
1 -ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
* *
65182134 ATATAATT-CCAGCATATAGCCTGCGGG
1 ATAT-ATTACCAGCACAAAGCCTGCGGG
65182161 TCTTTAGGCC
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 34 0.22
38 115 0.75
39 4 0.03
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAG
Found at i:65182049 original size:75 final size:76
Alignment explanation
Indices: 65181940--65182138 Score: 294
Period size: 75 Copynumber: 2.6 Consensus size: 76
65181930 GGCACGAAGG
* * * *
65181940 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTAACCCAGATATATTAACAGCACAAAGCCT
1 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATATTAACAGCACAAAGCCT
*
65182005 ATGGGATTTAA
66 ACGGGATTTAA
*
65182016 CCCTG-ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACAAAGCC
1 CCC-GAATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATATTAACAGCACAAAGCC
*
65182079 TGCGGGATTTAA
65 TACGGGATTTAA
* *
65182091 CCCGAATATATTACCAGCACGAAGCGTACGGGATTTAACCCAGATATA
1 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATA
65182139 ATTCCAGCAT
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
74 1 0.01
75 67 0.60
76 42 0.38
77 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (76 bp):
CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATATTAACAGCACAAAGCCT
ACGGGATTTAA
Found at i:65188834 original size:40 final size:40
Alignment explanation
Indices: 65188781--65188942 Score: 164
Period size: 40 Copynumber: 4.0 Consensus size: 40
65188771 AATGATACCT
* * *
65188781 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCT
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
* *
65188821 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCC
* * * * ** *
65188861 AGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
* * * *
65188901 GGGTTAAGACCCGAAGGCAGTTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
65188941 GG
1 GG
65188943 TTAAATCCCG
Statistics
Matches: 97, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
Found at i:65190758 original size:43 final size:43
Alignment explanation
Indices: 65190705--65190902 Score: 308
Period size: 43 Copynumber: 4.6 Consensus size: 43
65190695 CCGGCATTAC
* * *
65190705 GCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
65190748 GCCTGCTAGGCACGAAGGCCCGAATACAAATCATCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
65190791 GCCTGCTAGGCACTAAGTG-CCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAG-GCCCGAATACACATCACCGGCACGAA
*
65190834 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
65190877 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
65190903 TAATTCCAGC
Statistics
Matches: 142, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.01
43 140 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:65190950 original size:38 final size:38
Alignment explanation
Indices: 65190895--65191077 Score: 212
Period size: 38 Copynumber: 4.8 Consensus size: 38
65190885 GGCACGAAGG
* * * *
65190895 CCCGAATATAATT-CCAGCACTAGGCCTGCAGGATTTAA
1 CCCGGATAT-ATTACCAGCACGAAGCCTGCGGGATTTAA
65190933 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
65190971 CCCGGATATATTA-TAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * *
65191008 CCCGGATATATTACTAGCATGAAGCCTGTGAGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
65191046 CCTGGATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
65191078 TCTTTAGGCC
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
37 40 0.31
38 85 0.66
39 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:65190998 original size:37 final size:38
Alignment explanation
Indices: 65190918--65191055 Score: 215
Period size: 38 Copynumber: 3.7 Consensus size: 38
65190908 CCAGCACTAG
* *
65190918 GCCTGCAGGATTTAACCCGGATATATTACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATATTACTAGCACGAA
65190956 GCCTGCGGGATTTAACCCGGATATATTA-TAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATATTACTAGCACGAA
*
65190993 GCCTGCGGGATTTAACCCGGATATATTACTAGCATGAA
1 GCCTGCGGGATTTAACCCGGATATATTACTAGCACGAA
* * *
65191031 GCCTGTGAGATTTAACCTGGATATA
1 GCCTGCGGGATTTAACCCGGATATA
65191056 ATTCCAGCAT
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 36 0.39
38 57 0.61
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (38 bp):
GCCTGCGGGATTTAACCCGGATATATTACTAGCACGAA
Found at i:65198161 original size:17 final size:17
Alignment explanation
Indices: 65198121--65198162 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
65198111 TAAGTTCTAG
* *
65198121 TAGCTAAAGGTATTTAA
1 TAGCTATAGGTAGTTAA
65198138 TAGCTATAGGTAGTTAA
1 TAGCTATAGGTAGTTAA
65198155 TAGCTATA
1 TAGCTATA
65198163 AAACCTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (17 bp):
TAGCTATAGGTAGTTAA
Found at i:65204042 original size:27 final size:27
Alignment explanation
Indices: 65203971--65204028 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
65203961 ATGCATGAAA
65203971 ACCCTAAAATAGTAAATTTACTAAACT
1 ACCCTAAAATAGTAAATTTACTAAACT
65203998 ACCCTAAAATAGTAAATTTACTAAACT
1 ACCCTAAAATAGTAAATTTACTAAACT
65204025 ACCC
1 ACCC
65204029 CTAAGTATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.47, C:0.22, G:0.03, T:0.28
Consensus pattern (27 bp):
ACCCTAAAATAGTAAATTTACTAAACT
Found at i:65204228 original size:28 final size:28
Alignment explanation
Indices: 65204188--65204277 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
65204178 AGAGGAAGCG
65204188 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
65204216 TTCTGGTGGCTATGCCACAAACATCT-A
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
65204243 TTCTGGTGACTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
65204270 ATCTGGTG
1 TTCTGGTG
65204278 ACTCTATCAC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.11
27 23 0.43
28 25 0.46
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:65204282 original size:27 final size:27
Alignment explanation
Indices: 65204187--65204280 Score: 118
Period size: 27 Copynumber: 3.4 Consensus size: 27
65204177 TAGAGGAAGC
*
65204187 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGACTATGCCACAAATATCT
* *
65204214 GTTTCTGGTGGCTATGCCACAAACATCT
1 G-TTCTGGTGACTATGCCACAAATATCT
* *
65204242 ATTCTGGTGACTCTGCCAC-AATATCT
1 GTTCTGGTGACTATGCCACAAATATCT
65204268 GTATCTGGTGACT
1 GT-TCTGGTGACT
65204281 CTATCACAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
26 7 0.12
27 27 0.46
28 25 0.42
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
GTTCTGGTGACTATGCCACAAATATCT
Found at i:65210892 original size:26 final size:26
Alignment explanation
Indices: 65210863--65210922 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
65210853 TTTACTAAAC
** * *
65210863 TACCCCTAAGTATGAAATTACCATTA
1 TACCCCTAAGTACAAAATGACCATGA
65210889 TACCCCTAAGTACAAAATGACCATGA
1 TACCCCTAAGTACAAAATGACCATGA
65210915 TACCCCTA
1 TACCCCTA
65210923 GGGTTAGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (26 bp):
TACCCCTAAGTACAAAATGACCATGA
Found at i:65211066 original size:28 final size:28
Alignment explanation
Indices: 65211026--65211160 Score: 102
Period size: 27 Copynumber: 5.0 Consensus size: 28
65211016 AGAGGAAGCG
65211026 TTCTGGTAGCTATGCCACAAATATCTGT
1 TTCTGGTAGCTATGCCACAAATATCTGT
* * *
65211054 TTCTGGTAGCTATGCAACAAACATCT-A
1 TTCTGGTAGCTATGCCACAAATATCTGT
* * *
65211081 TTCTGGTGGATCTGCCAC-AATATCTGT
1 TTCTGGTAGCTATGCCACAAATATCTGT
* * *
65211108 ATCTGGT-GACTCTGTCAC-AATATCTG-
1 TTCTGGTAG-CTATGCCACAAATATCTGT
** * *
65211134 TTCTGCCAGCCATGCTACAAAT-TCTGT
1 TTCTGGTAGCTATGCCACAAATATCTGT
65211161 GGCGTGTAGT
Statistics
Matches: 83, Mismatches: 19, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
26 20 0.24
27 39 0.47
28 24 0.29
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (28 bp):
TTCTGGTAGCTATGCCACAAATATCTGT
Found at i:65211100 original size:27 final size:28
Alignment explanation
Indices: 65211026--65211100 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
65211016 AGAGGAAGCG
* * *
65211026 TTCTGGTAGCTATGCCACAAATATCTGT
1 TTCTGGTAGATATGCCACAAACATCTGA
* *
65211054 TTCTGGTAGCTATGCAACAAACATCT-A
1 TTCTGGTAGATATGCCACAAACATCTGA
* *
65211081 TTCTGGTGGATCTGCCACAA
1 TTCTGGTAGATATGCCACAA
65211101 TATCTGTATC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 16 0.40
28 24 0.60
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (28 bp):
TTCTGGTAGATATGCCACAAACATCTGA
Found at i:65214699 original size:14 final size:14
Alignment explanation
Indices: 65214677--65214721 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
65214667 TTAAAGAAGC
65214677 AACTCATTAAATTA
1 AACTCATTAAATTA
*
65214691 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
65214704 AACTCATTTAATTA
1 AACTCATTAAATTA
65214718 AACT
1 AACT
65214722 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:65214759 original size:22 final size:22
Alignment explanation
Indices: 65214733--65214802 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
65214723 AGATGAGTTG
65214733 TATTAATGACCAGCAACTCATT
1 TATTAATGACCAGCAACTCATT
* *
65214755 TATTAA--ACTA--AGA-TGAGTT
1 TATTAATGACCAGCA-ACTCA-TT
65214774 GTATTAATGACCAGCAACTCATT
1 -TATTAATGACCAGCAACTCATT
65214797 TATTAA
1 TATTAA
65214803 ACTAAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.25
22 15 0.42
23 3 0.08
24 3 0.08
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TATTAATGACCAGCAACTCATT
Done.