Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 233 of 444
Found at i:65799270 original size:40 final size:40
Alignment explanation
Indices: 65799216--65799369 Score: 274
Period size: 40 Copynumber: 3.9 Consensus size: 40
65799206 GATATAGCTT
*
65799216 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
65799256 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
65799296 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
65799336 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
65799370 CAATCCGAAT
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.12
40 96 0.88
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:65802049 original size:15 final size:15
Alignment explanation
Indices: 65802010--65802082 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 15
65802000 CAAGAAAACC
*
65802010 GAATAAAGAAATCCAA
1 GAATAAAGAAA-CCTA
*
65802026 G-ATAGAGAAACCTA
1 GAATAAAGAAACCTA
*
65802040 GAATAAAGAAATCTA
1 GAATAAAGAAACCTA
*
65802055 GAATAAAGAGATCC-A
1 GAATAAAGA-AACCTA
*
65802070 GGATAAAGAAACC
1 GAATAAAGAAACC
65802083 CAAGATATGA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
14 7 0.15
15 37 0.79
16 3 0.06
ACGTcount: A:0.56, C:0.12, G:0.18, T:0.14
Consensus pattern (15 bp):
GAATAAAGAAACCTA
Found at i:65804403 original size:78 final size:81
Alignment explanation
Indices: 65804291--65804468 Score: 215
Period size: 78 Copynumber: 2.2 Consensus size: 81
65804281 CGTTCAAATA
* *
65804291 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCT-TCGGGA-CTTAACCCGGATT
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG-CTATC-GGATCTTAACCCGGATT
* * *
65804353 TAATAAC-TCGCACCATG
64 TAATAACTTAGCACAAAG
**
65804370 CCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCTATCGGATCTTAGTCCGGATTTA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCTATCGGATCTTAACCCGGATTTA
* *
65804433 GTCACTTAGCACAAAG
66 ATAACTTAGCACAAAG
65804449 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
65804469 CATCATTCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
77 5 0.06
78 45 0.53
79 24 0.28
80 11 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCTATCGGATCTTAACCCGGATTTA
ATAACTTAGCACAAAG
Found at i:65804428 original size:40 final size:39
Alignment explanation
Indices: 65804285--65804468 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
65804275 GCTACTCGTT
* *
65804285 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
* *
65804325 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* * *
65804365 C-CATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
65804403 CAAATG-CTATCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCT-TCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
65804444 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
65804469 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 27 0.22
39 15 0.12
40 64 0.53
41 15 0.12
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65807943 original size:60 final size:60
Alignment explanation
Indices: 65807870--65807996 Score: 245
Period size: 60 Copynumber: 2.1 Consensus size: 60
65807860 ATTTCCATAC
65807870 CACTCAATAACCATATCATAAGACCATATATACAAAATGATTATAATGCTATACATGCCA
1 CACTCAATAACCATATCATAAGACCATATATACAAAATGATTATAATGCTATACATGCCA
65807930 CACTCAATAACCATATCATAAGACCATATATACAAAATGATTATAATGCTATACATGCCA
1 CACTCAATAACCATATCATAAGACCATATATACAAAATGATTATAATGCTATACATGCCA
*
65807990 TACTCAA
1 CACTCAA
65807997 AATATGCAAG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (60 bp):
CACTCAATAACCATATCATAAGACCATATATACAAAATGATTATAATGCTATACATGCCA
Found at i:65808566 original size:45 final size:46
Alignment explanation
Indices: 65808451--65808576 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
65808441 TGTAACCCGC
* * *
65808451 CCATAAGTGAACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACATTCACAT
*
65808497 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
65808543 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
65808577 AATGCCCAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
45 29 0.39
46 44 0.59
47 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:65809938 original size:28 final size:29
Alignment explanation
Indices: 65809879--65809971 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
65809869 CACAATTTCT
65809879 TTCATATGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
*
65809908 TTCATATGGCCCATTAGG-CCAAATCAAA
1 TTCATATGGCCCATTAGGCCCAAATCACA
65809936 TTCATATGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
65809965 TTCATAT
1 TTCATAT
65809972 TCATGCTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
28 27 0.44
29 34 0.56
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:65810222 original size:16 final size:16
Alignment explanation
Indices: 65810182--65810224 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
65810172 GTAGCCAAAC
65810182 TTTTGGCTTTTCGACA
1 TTTTGGCTTTTCGACA
** **
65810198 TTTCAGCTTTTCGGTA
1 TTTTGGCTTTTCGACA
65810214 TTTTGGCTTTT
1 TTTTGGCTTTT
65810225 GCCGATCTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (16 bp):
TTTTGGCTTTTCGACA
Found at i:65818361 original size:13 final size:13
Alignment explanation
Indices: 65818339--65818370 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
65818329 TGGGCCTACT
*
65818339 TGGGCTCACAATA
1 TGGGCCCACAATA
65818352 TGGGCCCACAATA
1 TGGGCCCACAATA
65818365 TGGGCC
1 TGGGCC
65818371 ATGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (13 bp):
TGGGCCCACAATA
Found at i:65831012 original size:39 final size:39
Alignment explanation
Indices: 65830931--65831093 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
65830921 TATGGTAACC
* *
65830931 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
65830971 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
65831010 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
65831049 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
65831088 CGCACA
1 CGCACA
65831094 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:65834235 original size:29 final size:29
Alignment explanation
Indices: 65834199--65834254 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
65834189 CCGAGCCTAG
*
65834199 GGGCAAAAGTGTAATTATGCAAAAGTTTA
1 GGGCAAAAATGTAATTATGCAAAAGTTTA
* *
65834228 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
65834255 CGTATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (29 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTA
Found at i:65841702 original size:30 final size:30
Alignment explanation
Indices: 65841666--65841725 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65841656 TTCCCGAGCC
*
65841666 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
65841696 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
65841726 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:65853676 original size:219 final size:219
Alignment explanation
Indices: 65853291--65853734 Score: 881
Period size: 219 Copynumber: 2.0 Consensus size: 219
65853281 TTTGTTCCTT
65853291 CCCTTG-CTCGCCTCATGATTTTGGTGCTCAGCGGCGATCTTCGCCTTTTCAACTAACACAGCAA
1 CCCTTGACTCGCCTCATGATTTTGGTGCTCAGCGGCGATCTTCGCCTTTTCAACTAACACAGCAA
65853355 AATCTCGCTCCCTCTAAGGAGCTATCAAAAATCGTAGATCATTTCTGAGATCGTCCTCAAAACGC
66 AATCTCGCTCCCTCTAAGGAGCTATCAAAAATCGTAGATCATTTCTGAGATCGTCCTCAAAACGC
65853420 ACACAGCATTCATACTCAGTTGCCACCATGCCTCGCCCATAGTGGCTCAATCATAAAAATTCCGC
131 ACACAGCATTCATACTCAGTTGCCACCATGCCTCGCCCATAGTGGCTCAATCATAAAAATTCCGC
65853485 CTCATATTCAGCCACAAACTTTTC
196 CTCATATTCAGCCACAAACTTTTC
65853509 CCCTTGACTCGCCTCATGATTTTGGTGCTCAGCGGCGATCTTCGCCTTTTCAACTAACACAGCAA
1 CCCTTGACTCGCCTCATGATTTTGGTGCTCAGCGGCGATCTTCGCCTTTTCAACTAACACAGCAA
65853574 AATCTCGCTCCCTCTAAGGAGCTATCAAAAATCGTAGATCATTTCTGAGATCGTCCTCAAAACGC
66 AATCTCGCTCCCTCTAAGGAGCTATCAAAAATCGTAGATCATTTCTGAGATCGTCCTCAAAACGC
65853639 ACACAGCATTCATACTCAGTTGCCACCATGCCTCGCCCATAGTGGCTCAATCATAAAAATTCCGC
131 ACACAGCATTCATACTCAGTTGCCACCATGCCTCGCCCATAGTGGCTCAATCATAAAAATTCCGC
65853704 CTCATATTCAGCCACAAACTTTTC
196 CTCATATTCAGCCACAAACTTTTC
65853728 CCCTTGA
1 CCCTTGA
65853735 GTCAGATTCA
Statistics
Matches: 225, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
218 6 0.03
219 219 0.97
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (219 bp):
CCCTTGACTCGCCTCATGATTTTGGTGCTCAGCGGCGATCTTCGCCTTTTCAACTAACACAGCAA
AATCTCGCTCCCTCTAAGGAGCTATCAAAAATCGTAGATCATTTCTGAGATCGTCCTCAAAACGC
ACACAGCATTCATACTCAGTTGCCACCATGCCTCGCCCATAGTGGCTCAATCATAAAAATTCCGC
CTCATATTCAGCCACAAACTTTTC
Found at i:65861804 original size:93 final size:93
Alignment explanation
Indices: 65861695--65861958 Score: 341
Period size: 93 Copynumber: 2.8 Consensus size: 93
65861685 CACCCATAAG
* * *
65861695 CAAACTCGGACTCAACTCAACAAGCTCGGCCGTTCGCATCCATAAGTGAACTCTGG-CTCAACTC
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTC-GGACTCAACTC
65861759 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
65861788 CGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGAATCCATAAGTGAACTCGGACTCAACTAA
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*** **
65861853 ACGAGCTTAAATGCCTAGTTATGTCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
** * **
65861881 CAAACTTAGACTCAACTCAAGGAGTTCATACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
65861946 ATGAGTTCGGATG
66 ACGAGCTCGGATG
65861959 TCCAAATATC
Statistics
Matches: 144, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
92 2 0.01
93 142 0.99
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:65861848 original size:46 final size:46
Alignment explanation
Indices: 65861688--65861859 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
65861678 TATAACCCAC
* * * *
65861688 CCATAAGCAAACTCGGACTCAACTCAACAAGCTCGGCCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAAT
* * * *
65861734 CCATAAGTGAACTCTGG-CTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTC-GGACTCAACTCAACGAGCTCGGACG-TTCG--A-AT
* * *
65861784 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAAT
* *
65861827 CCATAAGTGAACTCGGACTCAACTAAACGAGCT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT
65861860 TAAATGCCTA
Statistics
Matches: 98, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 2 0.02
46 58 0.59
47 29 0.30
48 2 0.02
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAAT
Found at i:65864087 original size:6 final size:6
Alignment explanation
Indices: 65864054--65864118 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
65864044 AAGCATAAGC
* * **
65864054 AAAATA GAAAATA ACAAATA ACAAATA AAAATA ACAATA AGAATA ATAAAGG
1 AAAATA -AAAATA A-AAATA A-AAATA AAAATA AAAATA AAAATA A-AAATA
65864106 AAAAT- AAAATA AA
1 AAAATA AAAATA AA
65864119 TAGCTAACTA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
5 5 0.10
6 22 0.45
7 22 0.45
ACGTcount: A:0.74, C:0.05, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:65864268 original size:21 final size:22
Alignment explanation
Indices: 65864230--65864273 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
65864220 CTGAGTGAAA
*
65864230 GGGGTGTGGGTGAGGAGAGGGT
1 GGGGTGTGGGTGAGGAGACGGT
65864252 GGGGTG-GGGTG-GTGAGACGGT
1 GGGGTGTGGGTGAG-GAGACGGT
65864273 G
1 G
65864274 ATGGAAGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 13 0.65
22 6 0.30
ACGTcount: A:0.11, C:0.02, G:0.68, T:0.18
Consensus pattern (22 bp):
GGGGTGTGGGTGAGGAGACGGT
Found at i:65864417 original size:12 final size:13
Alignment explanation
Indices: 65864400--65864429 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
65864390 TCCAACAGGA
65864400 AAAAGGGAA-GGG
1 AAAAGGGAATGGG
65864412 AAAAGGGAATGGG
1 AAAAGGGAATGGG
65864425 AAAAG
1 AAAAG
65864430 CTGAAGAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.43, T:0.03
Consensus pattern (13 bp):
AAAAGGGAATGGG
Found at i:65888740 original size:22 final size:21
Alignment explanation
Indices: 65888697--65888740 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
65888687 GTCTTTTAAG
* *
65888697 AAAATGATAAATAAAGACAAA
1 AAAATGAAAAATAAAAACAAA
*
65888718 AAAATGCAAAAATAAAAATAAA
1 AAAATG-AAAAATAAAAACAAA
65888740 A
1 A
65888741 TAAAAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (21 bp):
AAAATGAAAAATAAAAACAAA
Found at i:65893883 original size:29 final size:29
Alignment explanation
Indices: 65893851--65893985 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
65893841 ATACCCTCCG
** * *
65893851 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
65893880 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
65893909 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
65893938 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
65893967 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
65893986 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:65893918 original size:58 final size:58
Alignment explanation
Indices: 65893797--65893986 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
65893787 TACTCGATTT
* * * *** *
65893797 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
65893855 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
65893913 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
65893971 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
65893987 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:65908314 original size:33 final size:32
Alignment explanation
Indices: 65908265--65908328 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
65908255 CTCACTGCAA
* *
65908265 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
65908298 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
65908329 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:65913260 original size:40 final size:39
Alignment explanation
Indices: 65913092--65913262 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
65913082 AGAAATTGAA
* *
65913092 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
65913132 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
65913172 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
65913212 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
65913252 TGATATCCGGG
1 TGATATCCGGG
65913263 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:65920013 original size:38 final size:39
Alignment explanation
Indices: 65919931--65920112 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
65919921 AATGTTCGAG
65919931 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
65919970 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
65920008 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
65920047 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
65920087 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
65920113 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:65929226 original size:19 final size:19
Alignment explanation
Indices: 65929197--65929238 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
65929187 TTAATTTAGT
*
65929197 TTAAG-TAATTAATGTGTC
1 TTAAGTTAATTAATATGTC
65929215 TTAAGTTAATTAATATGTC
1 TTAAGTTAATTAATATGTC
65929234 -TAAGT
1 TTAAGT
65929239 ATTTTTGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (19 bp):
TTAAGTTAATTAATATGTC
Found at i:65930769 original size:27 final size:26
Alignment explanation
Indices: 65930733--65930845 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
65930723 TAGCATGGCT
* *
65930733 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
65930759 ACCAGATACAGATAATTGTGGCAGAGCC
1 ACCAGA-ACAGATAA-TGTGGCAGAGCC
*
65930787 ACCAGAACAGAAATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
65930814 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
65930841 ACCAG
1 ACCAG
65930846 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:65930797 original size:54 final size:54
Alignment explanation
Indices: 65930733--65930845 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
65930723 TAGCATGGCT
* *
65930733 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCC
* *
65930787 ACCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCC
65930841 ACCAG
1 ACCAG
65930846 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCC
Found at i:65932687 original size:24 final size:24
Alignment explanation
Indices: 65932660--65932722 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
65932650 CTTATTATGT
*
65932660 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAATAAA
65932684 TCGCACACATAGTGCCATAATAAA
1 TCGCACACATAGTGCCATAATAAA
*
65932708 TTGCACACATAGTGC
1 TCGCACACATAGTGC
65932723 ATTTGAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAATAAA
Found at i:65939764 original size:27 final size:26
Alignment explanation
Indices: 65939729--65939840 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
65939719 AGCATGGCTG
* *
65939729 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
65939755 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
65939783 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
65939810 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
65939837 CCAG
1 CCAG
65939841 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:65939821 original size:54 final size:54
Alignment explanation
Indices: 65939729--65939840 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
65939719 AGCATGGCTG
* *
65939729 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
65939783 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
65939837 CCAG
1 CCAG
65939841 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:65945007 original size:27 final size:26
Alignment explanation
Indices: 65944972--65945083 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
65944962 AGCATGGCTG
* *
65944972 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
65944998 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
65945026 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
65945053 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
65945080 CCAG
1 CCAG
65945084 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:65945064 original size:54 final size:54
Alignment explanation
Indices: 65944972--65945083 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
65944962 AGCATGGCTG
* *
65944972 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
65945026 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
65945080 CCAG
1 CCAG
65945084 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:65950892 original size:27 final size:26
Alignment explanation
Indices: 65950857--65950968 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
65950847 AGCATGGCTG
* *
65950857 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
65950883 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
65950911 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
65950938 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
65950965 CCAG
1 CCAG
65950969 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:65950949 original size:54 final size:54
Alignment explanation
Indices: 65950857--65950968 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
65950847 AGCATGGCTG
* *
65950857 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
65950911 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
65950965 CCAG
1 CCAG
65950969 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:65955448 original size:100 final size:100
Alignment explanation
Indices: 65955275--65955559 Score: 538
Period size: 100 Copynumber: 2.9 Consensus size: 100
65955265 TAATAAGATA
*
65955275 TGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
65955340 GGCCGATGTGATGAATGTGAAAGTGTATATATATG
66 GGCCGATGTGATGAATGTGAAAGTGTATATATATG
65955375 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
65955440 GGCCGATGTGATGAATGTGAAAGTGTATATATATG
66 GGCCGATGTGATGAATGTGAAAGTGTATATATATG
*
65955475 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATATGTGATAAGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
65955538 GGCCGATGTGATGAATGTGAAA
66 GGCCGATGTGATGAATGTGAAA
65955560 TATATGTGTG
Statistics
Matches: 183, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
98 43 0.23
100 140 0.77
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.31
Consensus pattern (100 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATATG
Found at i:65955574 original size:49 final size:49
Alignment explanation
Indices: 65955275--65955559 Score: 507
Period size: 49 Copynumber: 5.7 Consensus size: 49
65955265 TAATAAGATA
*
65955275 TGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATATG
*
65955326 TGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
65955375 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATATG
*
65955426 TGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
65955475 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
65955524 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
65955560 TATATGTGTG
Statistics
Matches: 229, Mismatches: 3, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
49 140 0.61
51 89 0.39
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
Found at i:65955672 original size:39 final size:39
Alignment explanation
Indices: 65955618--65955693 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
65955608 CATTTATAAG
*
65955618 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65955657 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
65955694 TGTTGTAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (39 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:65955787 original size:37 final size:37
Alignment explanation
Indices: 65955733--65955823 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
65955723 AACTTGGAAA
* *
65955733 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
65955771 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
65955808 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
65955824 TTCATAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:65957816 original size:41 final size:44
Alignment explanation
Indices: 65957709--65957869 Score: 145
Period size: 45 Copynumber: 3.7 Consensus size: 44
65957699 ATATCAAACA
* * * * *
65957709 ATGCCAACGTCCCAAACGTGGTCTTACATG--CTATCTTATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAACCA-CATATATCG
* * * *
65957752 ATGCC-ACTGTCCCATATAGGGTCTTACACGAATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAACCACATATATCG
* *
65957793 ATGCCGATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACCACATATATCG
*
65957838 ATGCCAACGTCCCAGACGTGGTCTTACACGAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAA
65957870 AAAACATATC
Statistics
Matches: 94, Mismatches: 16, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
41 26 0.28
42 10 0.11
43 23 0.24
44 5 0.05
45 30 0.32
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACCACATATATCG
Found at i:65957877 original size:45 final size:43
Alignment explanation
Indices: 65957709--65957880 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
65957699 ATATCAAACA
* * ** * *
65957709 ATGCCAACGTCCCAAACGTGGTCTTACATGCTATCTTATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACATATATCG
* * * *
65957752 ATGCC-ACTGTCCCATATAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAAACATATATCG
* * * *
65957793 ATGCCGATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AA-AACATATATCG
* *
65957838 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAAAACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACATATATCG
65957881 GATCCTATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 25 0.25
42 9 0.09
43 31 0.30
44 8 0.08
45 29 0.28
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACATATATCG
Found at i:65960048 original size:40 final size:40
Alignment explanation
Indices: 65960003--65960132 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
65959993 CGGAATATAA
65960003 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
65960043 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
65960083 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
65960123 CCGGATATAA
1 CCGGATATAA
65960133 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:65960147 original size:40 final size:40
Alignment explanation
Indices: 65960019--65960170 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
65960009 ATAAGCATGT
* * *
65960019 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
65960059 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
65960099 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
65960139 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
65960171 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:65960153 original size:80 final size:80
Alignment explanation
Indices: 65960019--65960170 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
65960009 ATAAGCATGT
* *
65960019 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
65960084 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
65960099 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
65960162 CCCGGATAT
64 CCCGGATAT
65960171 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:65969588 original size:29 final size:29
Alignment explanation
Indices: 65969521--65969645 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
65969511 AAGTCTATAT
* *
65969521 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
65969549 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
65969578 ACATTTGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
65969607 ACATTCATACGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
65969636 ACTTTCATAT
1 ACATTCATAT
65969646 ACATGCTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.25
29 63 0.75
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:65972108 original size:121 final size:122
Alignment explanation
Indices: 65971870--65972109 Score: 473
Period size: 121 Copynumber: 2.0 Consensus size: 122
65971860 AAATAAGCCA
65971870 ATATTAATTTATAATTGAAATATTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
1 ATATTAATTTATAATTGAAATATTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
65971935 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
66 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
65971992 ATATTAATTTATAATTGAAAT-TTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
1 ATATTAATTTATAATTGAAATATTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
65972056 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTG
66 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTG
65972110 CCAAAATGAA
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 97 0.82
122 21 0.18
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (122 bp):
ATATTAATTTATAATTGAAATATTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
Found at i:65974341 original size:30 final size:29
Alignment explanation
Indices: 65974298--65974361 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
65974288 TAAGTAGCCG
* *
65974298 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCCCACACTTAATGCCA
65974327 AAGCTAGTTTAAATCCCACACTTAATGCCA
1 AAGCTAG-TTAAATCCCACACTTAATGCCA
65974357 AAGCT
1 AAGCT
65974362 CCCGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCCCACACTTAATGCCA
Found at i:65975851 original size:45 final size:44
Alignment explanation
Indices: 65975746--65975878 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 44
65975736 ATGCTATCTC
* * * *
65975746 ATATCGATGCC-ACTATCCTAGACAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACACGAAACACAT
* * *
65975788 ATA-CGATGTCAATGTCCCAGACATGGTCTTACACGTAACCACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
*
65975832 ATATCGATGCCAACGTCCCAGACATGGACTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
65975877 AT
1 AT
65975879 CGGATCCTAT
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
41 25 0.33
42 8 0.11
43 1 0.01
44 3 0.04
45 38 0.51
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.23
Consensus pattern (44 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:65977854 original size:4 final size:4
Alignment explanation
Indices: 65977845--65977872 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
65977835 TTCTTCTCTT
65977845 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
65977873 AGCCTTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:65981761 original size:7 final size:7
Alignment explanation
Indices: 65981751--65981777 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
65981741 ATAAAAGTGA
65981751 AAATAAC
1 AAATAAC
65981758 AAATAAC
1 AAATAAC
65981765 AAATAAC
1 AAATAAC
65981772 AAATAA
1 AAATAA
65981778 AAAGTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAC
Found at i:65991002 original size:45 final size:45
Alignment explanation
Indices: 65990938--65991111 Score: 226
Period size: 45 Copynumber: 3.8 Consensus size: 45
65990928 TGTAACCCGC
65990938 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
65990983 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
65991029 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
65991076 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
65991112 ATGCCCAAAT
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 36 0.32
46 33 0.30
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:65991104 original size:93 final size:92
Alignment explanation
Indices: 65990946--65991116 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
65990936 GCCCATAAGT
65990946 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
65991011 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
65991038 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65991103 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
65991117 CAAATATCCT
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:65996601 original size:46 final size:44
Alignment explanation
Indices: 65996429--65996600 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 44
65996419 TGTAACCCGC
*
65996429 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGCATTCGCAT
*
65996474 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
65996519 ACATCTCTCGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
65996565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGG
65996601 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 21 0.20
45 25 0.23
46 52 0.49
48 4 0.04
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:65996620 original size:46 final size:43
Alignment explanation
Indices: 65996434--65996620 Score: 107
Period size: 46 Copynumber: 4.1 Consensus size: 43
65996424 CCCGCCCATA
* * * *
65996434 AGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGC--ATCCAT
1 AGTGAACTC-GACTCAACTCAACGAGTTCGG-ATGCCCAAATCC-T
* *
65996478 AAGTGAACTCGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
65996527 --CGAACTCGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
65996569 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
65996616 AGTGA
1 AGTGA
65996621 CATGTCACTT
Statistics
Matches: 112, Mismatches: 12, Indels: 35
0.70 0.08 0.22
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 2 0.02
44 25 0.22
45 15 0.13
46 52 0.46
47 1 0.01
48 7 0.06
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
AGTGAACTCGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:65998653 original size:30 final size:31
Alignment explanation
Indices: 65998619--65998705 Score: 83
Period size: 30 Copynumber: 2.9 Consensus size: 31
65998609 TGCAAGCTGA
*
65998619 TCAGCTCGATC-CTAGC-CTATTGAGCTTGAT
1 TCAGCTCGAACTCTAGCTC-ATTGAGCTTGAT
*
65998649 TCAGCTCGAACTTTAGCTCATTGAGCTTGA-
1 TCAGCTCGAACTCTAGCTCATTGAGCTTGAT
* * *
65998679 TCTGGCTC-AACTTTAGCTTATTGAGCT
1 TC-AGCTCGAACTCTAGCTCATTGAGCT
65998706 CGTTCCATCT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
30 30 0.60
31 19 0.38
32 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (31 bp):
TCAGCTCGAACTCTAGCTCATTGAGCTTGAT
Found at i:65998675 original size:31 final size:30
Alignment explanation
Indices: 65998637--65998705 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
65998627 ATCCTAGCCT
65998637 ATTGAGCTTGAT-TCAGCTCGAACTTTAGCTC
1 ATTGAGCTTGATCT-AGCTC-AACTTTAGCTC
* *
65998668 ATTGAGCTTGATCTGGCTCAACTTTAGCTT
1 ATTGAGCTTGATCTAGCTCAACTTTAGCTC
65998698 ATTGAGCT
1 ATTGAGCT
65998706 CGTTCCATCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 18 0.51
31 16 0.46
32 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (30 bp):
ATTGAGCTTGATCTAGCTCAACTTTAGCTC
Found at i:65998794 original size:18 final size:17
Alignment explanation
Indices: 65998781--65998825 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
65998771 AGTTAATTTA
*
65998781 GTTTAAGTAATTAATGT
1 GTTTAAGTAATTAATAT
65998798 GTCTTAAGTTAATTAATAT
1 GT-TTAAG-TAATTAATAT
65998817 GTTTAAGTA
1 GTTTAAGTA
65998826 TTTTCAGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 11 0.44
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (17 bp):
GTTTAAGTAATTAATAT
Found at i:65998812 original size:19 final size:18
Alignment explanation
Indices: 65998781--65998824 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
65998771 AGTTAATTTA
*
65998781 GTTTAAG-TAATTAATGT
1 GTTTAAGTTAATTAATAT
65998798 GTCTTAAGTTAATTAATAT
1 GT-TTAAGTTAATTAATAT
65998817 GTTTAAGT
1 GTTTAAGT
65998825 ATTTTCAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 2 0.08
18 11 0.46
19 11 0.46
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (18 bp):
GTTTAAGTTAATTAATAT
Found at i:65999631 original size:11 final size:11
Alignment explanation
Indices: 65999611--65999646 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
65999601 CTCCCATGCT
65999611 AGGAAACTTCA
1 AGGAAACTTCA
*
65999622 AGGAACCTTCA
1 AGGAAACTTCA
*
65999633 AGGAAGCTTCA
1 AGGAAACTTCA
65999644 AGG
1 AGG
65999647 GATGTTCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:65999658 original size:22 final size:22
Alignment explanation
Indices: 65999609--65999660 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
65999599 GTCTCCCATG
*
65999609 CTAGGAAACTTCAAGGAACCTT
1 CTAGGAAGCTTCAAGGAACCTT
* * **
65999631 CAAGGAAGCTTCAAGGGATGTT
1 CTAGGAAGCTTCAAGGAACCTT
65999653 CTAGGAAG
1 CTAGGAAG
65999661 TTGCCAAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (22 bp):
CTAGGAAGCTTCAAGGAACCTT
Found at i:66003705 original size:16 final size:16
Alignment explanation
Indices: 66003684--66003717 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
66003674 TAGCTAGACA
66003684 CATGAAATTATTCCAG
1 CATGAAATTATTCCAG
*
66003700 CATGAAATTGTTCCAG
1 CATGAAATTATTCCAG
66003716 CA
1 CA
66003718 AAAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (16 bp):
CATGAAATTATTCCAG
Found at i:66011211 original size:17 final size:18
Alignment explanation
Indices: 66011169--66011217 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
66011159 AGTTGAAAAG
66011169 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
66011188 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
66011205 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
66011218 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:66012101 original size:40 final size:40
Alignment explanation
Indices: 66012035--66012201 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
66012025 AAATTGAATG
* * *
66012035 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
66012074 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66012114 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
66012154 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
66012194 ATATCCGG
1 ATATCCGG
66012202 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66019210 original size:17 final size:18
Alignment explanation
Indices: 66019168--66019216 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
66019158 AGTTGAAAAG
66019168 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
66019187 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
66019204 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
66019217 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:66020099 original size:40 final size:40
Alignment explanation
Indices: 66020033--66020199 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
66020023 AAATTGAATG
* * *
66020033 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
66020072 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66020112 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
66020152 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
66020192 ATATCCGG
1 ATATCCGG
66020200 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66024492 original size:22 final size:22
Alignment explanation
Indices: 66024457--66024531 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
66024447 TACAGCCTTT
* *
66024457 AGCCGTCCTTTCTACGGCGTTG
1 AGCCATCCTATCTACGGCGTTG
* * ** *
66024479 AGCCATTCTGTCTACGGCACTA
1 AGCCATCCTATCTACGGCGTTG
*
66024501 AGCCGTCCTATCTACGGCGTTG
1 AGCCATCCTATCTACGGCGTTG
*
66024523 AGCCGTCCT
1 AGCCATCCT
66024532 GTTGACTTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.28
Consensus pattern (22 bp):
AGCCATCCTATCTACGGCGTTG
Found at i:66031906 original size:18 final size:17
Alignment explanation
Indices: 66031880--66031919 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
66031870 TTTGGGCCGA
*
66031880 GTGGGCCACACGGGCAT
1 GTGGGCCACACGAGCAT
*
66031897 GTGGGTCCACACGAGCGT
1 GTGGG-CCACACGAGCAT
66031915 GTGGG
1 GTGGG
66031920 ATTTTGGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.15, C:0.25, G:0.45, T:0.15
Consensus pattern (17 bp):
GTGGGCCACACGAGCAT
Found at i:66034090 original size:40 final size:40
Alignment explanation
Indices: 66034016--66034239 Score: 355
Period size: 40 Copynumber: 5.6 Consensus size: 40
66034006 AACCCAAGTA
* *
66034016 CCTTCGGGAT-TTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
66034055 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
66034095 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
66034135 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
*
66034176 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
66034217 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
66034240 CATCCGAATA
Statistics
Matches: 177, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 95 0.54
41 69 0.39
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:66037103 original size:18 final size:20
Alignment explanation
Indices: 66037059--66037100 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
66037049 TCACCCCTAA
66037059 TGTGGCCGAGTACTAGATTG
1 TGTGGCCGAGTACTAGATTG
66037079 TGTGGCCGAGTACTAGATTG
1 TGTGGCCGAGTACTAGATTG
66037099 TG
1 TG
66037101 GCCACGGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.36, T:0.31
Consensus pattern (20 bp):
TGTGGCCGAGTACTAGATTG
Found at i:66045169 original size:40 final size:40
Alignment explanation
Indices: 66045125--66045310 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
66045115 GCTACTCGTT
* * *
66045125 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
66045165 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
66045205 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
66045245 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
66045286 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66045311 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66052868 original size:40 final size:40
Alignment explanation
Indices: 66052823--66052989 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
66052813 CGGAATATAA
66052823 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
66052863 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
66052903 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
66052943 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
66052982 CCGGATAT
1 CCGGATAT
66052990 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:66052973 original size:80 final size:79
Alignment explanation
Indices: 66052839--66052989 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
66052829 ATAATCACGT
*
66052839 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
66052904 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
66052919 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
66052982 CCGGATAT
64 CCGGATAT
66052990 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:66058741 original size:40 final size:40
Alignment explanation
Indices: 66058696--66058862 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
66058686 CGGAATATAA
66058696 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
66058736 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
66058776 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
66058816 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
66058855 CCGGATAT
1 CCGGATAT
66058863 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:66058846 original size:80 final size:79
Alignment explanation
Indices: 66058712--66058862 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
66058702 ATAATCACGT
*
66058712 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
66058777 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
66058792 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
66058855 CCGGATAT
64 CCGGATAT
66058863 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:66062643 original size:40 final size:40
Alignment explanation
Indices: 66062577--66062728 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
66062567 AAATTGAATG
* *
66062577 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
66062616 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
66062656 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GA-AATT
* *
66062697 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
66062729 ACGTGATTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
39 16 0.18
40 45 0.50
41 27 0.30
42 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:66070635 original size:40 final size:40
Alignment explanation
Indices: 66070570--66070719 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
66070560 AAATTGAATG
* *
66070570 ATATCCGGGCT-A-ACCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
66070608 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
66070648 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
66070688 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
66070720 ACGTGATTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
38 10 0.11
39 4 0.04
40 73 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:66070733 original size:40 final size:40
Alignment explanation
Indices: 66070605--66070735 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
66070595 TATGCTGGAA
* * *
66070605 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
66070645 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
66070685 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66070725 ATTATATCCGG
1 ATTATATCCGG
66070736 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:66074450 original size:13 final size:14
Alignment explanation
Indices: 66074425--66074474 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
66074415 GTGTGTATAT
66074425 ATAAAAAAGGGAAA
1 ATAAAAAAGGGAAA
*
66074439 ATAAAAAAGGAAAA
1 ATAAAAAAGGGAAA
*
66074453 AGAAATAAAGGAGAGAA
1 ATAAA-AAAGG-GA-AA
66074470 ATAAA
1 ATAAA
66074475 GAAACAAAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 17 0.59
15 5 0.17
16 1 0.03
17 6 0.21
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (14 bp):
ATAAAAAAGGGAAA
Found at i:66076455 original size:46 final size:46
Alignment explanation
Indices: 66076403--66076630 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
66076393 AGTGTGCTCT
66076403 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
66076449 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
66076495 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
66076541 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
66076587 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66076631 TCATGTCAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 168 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:66077804 original size:23 final size:23
Alignment explanation
Indices: 66077772--66077835 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
66077762 ACCAATATCG
*
66077772 CAGCATAGCTGCTAATAGTAACA
1 CAGCAAAGCTGCTAATAGTAACA
* *
66077795 CAGTAAAGCTGCTAATAGTAACG
1 CAGCAAAGCTGCTAATAGTAACA
*
66077818 CAGCAAAGTTGCTAATAG
1 CAGCAAAGCTGCTAATAG
66077836 AGGTAAACGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (23 bp):
CAGCAAAGCTGCTAATAGTAACA
Found at i:66081586 original size:16 final size:16
Alignment explanation
Indices: 66081565--66081596 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66081555 ACTATAACGC
66081565 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
66081581 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
66081597 TCCCGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:66083447 original size:28 final size:28
Alignment explanation
Indices: 66083409--66083515 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
66083399 GAATCATTCG
* *
66083409 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
66083437 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
66083465 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
66083493 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
66083516 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:66088493 original size:57 final size:57
Alignment explanation
Indices: 66088423--66088660 Score: 389
Period size: 57 Copynumber: 4.2 Consensus size: 57
66088413 GATCTCATTT
* * *
66088423 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
66088482 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
66088539 --CACACAGTGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
66088593 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTC-GTTACGGAACT--
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
66088647 CACACACAGTGCCT
1 CACACACAGTGCCT
66088661 ATGTTCACTT
Statistics
Matches: 173, Mismatches: 3, Indels: 11
0.93 0.02 0.06
Matches are distributed among these distances:
54 50 0.29
55 18 0.10
56 29 0.17
57 69 0.40
59 7 0.04
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:66088570 original size:111 final size:111
Alignment explanation
Indices: 66088422--66088660 Score: 408
Period size: 111 Copynumber: 2.1 Consensus size: 111
66088412 TGATCTCATT
* * *
66088422 TCACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCGCACAC
1 TCACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACAC
66088487 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAAC
64 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTC-GTTACGGAAC
*
66088536 TCGCACACAGTGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACAC
1 TCACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACAC
66088600 AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGTTACGGAAC
66 AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGTTACGGAAC
66088646 TCACACACAGTGCCT
1 TCACACACAGTGCCT
66088661 ATGTTCACTT
Statistics
Matches: 120, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
110 24 0.20
111 77 0.64
112 12 0.10
114 7 0.06
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.18
Consensus pattern (111 bp):
TCACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACAC
AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGTTACGGAAC
Found at i:66090669 original size:28 final size:28
Alignment explanation
Indices: 66090631--66090737 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
66090621 GAATCATTCG
* *
66090631 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
66090659 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
66090687 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
66090715 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
66090738 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:66093344 original size:29 final size:28
Alignment explanation
Indices: 66093292--66093406 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
66093282 ATGAACGTGA
* *
66093292 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
66093320 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* **
66093349 ATATACA-GATGATTTGGGCCTAATAAGCC
1 ATATAAATG-TGA-TTGGGCCTAATGGGCC
* *
66093378 ATATAAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
66093406 A
1 A
66093407 GATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.65
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:66101010 original size:54 final size:54
Alignment explanation
Indices: 66100887--66101066 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
66100877 GGACATGGGC
* * * * * *
66100887 TGAGACACGGGCGTGTCGCCCAAGTCAGTGAGTTACACGGTCTGGCATACGGGT
1 TGAGACACGGGCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAGCACATGAGT
* * ** * *
66100941 TGTGACATGATCGTGTGGCCCAAGTCAGTGAGTTACATGGTTTAACACATGAGT
1 TGAGACACGGGCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAGCACATGAGT
* * *
66100995 TGAGACACGGGCGTGTGACCCAAGTTAGTGAGTTACATGGTCTAGCAGATGA-T
1 TGAGACACGGGCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAGCACATGAGT
* *
66101048 TGGGTACATGGGCGTGTGG
1 TGAG-ACACGGGCGTGTGG
66101067 AATGGCCACA
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
53 4 0.04
54 97 0.96
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (54 bp):
TGAGACACGGGCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAGCACATGAGT
Found at i:66103296 original size:20 final size:19
Alignment explanation
Indices: 66103270--66103321 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 19
66103260 TTAGAGCTGG
*
66103270 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
66103289 ACATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
66103309 AATTATCGATACC
1 AA-TATCGATACC
66103322 GGATCGATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:66103720 original size:32 final size:33
Alignment explanation
Indices: 66103666--66103731 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
66103656 TGAATAGATT
* *
66103666 GCTCCCCTTTAATAAAAGTCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
66103699 GCTCCCCTAT-ATAAAAATCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
66103731 G
1 G
66103732 GCATAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 22 0.71
33 9 0.29
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (33 bp):
GCTCCCCTATAATAAAAATCATTTTCAATTTAA
Found at i:66105222 original size:55 final size:53
Alignment explanation
Indices: 66105159--66105296 Score: 159
Period size: 53 Copynumber: 2.6 Consensus size: 53
66105149 GCAAGGAAAT
* *
66105159 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATG-TAAACTAC-ATAAGGCAAAGATAC
* * ** * * *
66105214 CATGTAAGACCATGCCAAGGCATGGCAATGTTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
* *
66105267 CACGTAAGACCATATCAAGACATGGCAATG
1 CATGTAAGACCATGTCAAGACATGGCAATG
66105297 GTAAGTTAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
53 39 0.56
54 4 0.06
55 27 0.39
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
Found at i:66113014 original size:14 final size:14
Alignment explanation
Indices: 66112995--66113023 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
66112985 TGTTGCATGC
66112995 ATTAAATAGGTAAA
1 ATTAAATAGGTAAA
66113009 ATTAAATAGGTAAA
1 ATTAAATAGGTAAA
66113023 A
1 A
66113024 CAGACCTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (14 bp):
ATTAAATAGGTAAA
Found at i:66117425 original size:67 final size:67
Alignment explanation
Indices: 66117322--66117482 Score: 243
Period size: 67 Copynumber: 2.4 Consensus size: 67
66117312 TGGTTAGAGT
* *
66117322 AATATTAATATTAAAATAAGAT-TTACAATAAGATTATCTTGGGTTTTCTATATTAACATAATAC
1 AATATTATTATTAAACTAA-ATATTA-AATAAGATTATCTTGGGTTTTCTATATTAACATAATAC
66117386 ATTA
64 ATTA
* * *
66117390 AATATTATTGTTAAACTAAATATTAAATAATATTATCTTGGGTTTTCTATATTAATATAATACAT
1 AATATTATTATTAAACTAAATATTAAATAAGATTATCTTGGGTTTTCTATATTAACATAATACAT
66117455 TA
66 TA
*
66117457 AATATTATTTTTAAACTAAATATTAA
1 AATATTATTATTAAACTAAATATTAA
66117483 TATTAAAAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
67 67 0.78
68 19 0.22
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (67 bp):
AATATTATTATTAAACTAAATATTAAATAAGATTATCTTGGGTTTTCTATATTAACATAATACAT
TA
Found at i:66117488 original size:18 final size:18
Alignment explanation
Indices: 66117455--66117489 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66117445 TATAATACAT
* *
66117455 TAAATATTATTTTTAAAC
1 TAAATATTAATATTAAAC
66117473 TAAATATTAATATTAAA
1 TAAATATTAATATTAAA
66117490 AATTAATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATATTAATATTAAAC
Found at i:66124030 original size:2 final size:2
Alignment explanation
Indices: 66124025--66124065 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
66124015 GGTGTGTATT
66124025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66124066 GTAAATAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66126186 original size:13 final size:13
Alignment explanation
Indices: 66126168--66126193 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66126158 ATTAACATAG
66126168 CACATTTTATATT
1 CACATTTTATATT
66126181 CACATTTTATATT
1 CACATTTTATATT
66126194 TTACACTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
CACATTTTATATT
Found at i:66130174 original size:124 final size:124
Alignment explanation
Indices: 66129952--66130176 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
66129942 GAATTATGTG
* * * * * * *
66129952 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
66130017 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
66130076 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
66130141 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
66130177 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:66130298 original size:40 final size:40
Alignment explanation
Indices: 66130171--66130300 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
66130161 TTGCTGGAAA
* * *
66130171 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
66130211 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
66130251 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
66130291 TTATATCCGG
1 TTATATCCGG
66130301 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:66138285 original size:124 final size:124
Alignment explanation
Indices: 66138063--66138287 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
66138053 GAATTATGTG
* * * * * * *
66138063 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
66138128 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
66138187 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
66138252 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
66138288 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:66138409 original size:40 final size:40
Alignment explanation
Indices: 66138282--66138411 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
66138272 TTGCTGGAAA
* * *
66138282 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
66138322 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
66138362 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
66138402 TTATATCCGG
1 TTATATCCGG
66138412 TTGTATTCTG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:66144007 original size:21 final size:21
Alignment explanation
Indices: 66143967--66144139 Score: 126
Period size: 21 Copynumber: 8.3 Consensus size: 21
66143957 CAAATATGCT
*
66143967 AACAGAAGCT--TAAAAGCTA
1 AACAGAAGCTCATAAGAGCTA
66143986 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
66144007 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* *
66144028 AACAAAAGCT-AAACAGAAGCTCA
1 AACAGAAGCTCATA-AG-AGCT-A
* * * *
66144051 TA-AG-AGCTAAACAAAAGCTA
1 AACAGAAGCT-CATAAGAGCTA
* *
66144071 AA-AGAAGCTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTA
*
66144091 AACAGAAGCTCATAAGAACTTA
1 AACAGAAGCTCATAAGAGC-TA
* * *
66144113 AA-AGAAGCTCGTAAGAGTTG
1 AACAGAAGCTCATAAGAGCTA
66144133 AACAGAA
1 AACAGAA
66144140 AGTAAAACAC
Statistics
Matches: 121, Mismatches: 22, Indels: 20
0.74 0.13 0.12
Matches are distributed among these distances:
19 10 0.08
20 16 0.13
21 82 0.68
22 9 0.07
23 4 0.03
ACGTcount: A:0.50, C:0.16, G:0.19, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:66144038 original size:32 final size:32
Alignment explanation
Indices: 66144002--66144087 Score: 156
Period size: 32 Copynumber: 2.7 Consensus size: 32
66143992 AGCTCATAAG
*
66144002 AGCTAAACAGAAGCTCGTAAGAGCTAAACAAA
1 AGCTAAACAGAAGCTCATAAGAGCTAAACAAA
66144034 AGCTAAACAGAAGCTCATAAGAGCTAAACAAA
1 AGCTAAACAGAAGCTCATAAGAGCTAAACAAA
66144066 AGCTAAA-AGAAGCTCATAAGAG
1 AGCTAAACAGAAGCTCATAAGAG
66144088 TTGAACAGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 15 0.28
32 38 0.72
ACGTcount: A:0.51, C:0.17, G:0.19, T:0.13
Consensus pattern (32 bp):
AGCTAAACAGAAGCTCATAAGAGCTAAACAAA
Found at i:66144039 original size:11 final size:11
Alignment explanation
Indices: 66144023--66144072 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
66144013 AGCTCGTAAG
66144023 AGCTAAACAAA
1 AGCTAAACAAA
*
66144034 AGCTAAACAGA
1 AGCTAAACAAA
* * *
66144045 AGCT-CATAAG
1 AGCTAAACAAA
66144055 AGCTAAACAAA
1 AGCTAAACAAA
66144066 AGCTAAA
1 AGCTAAA
66144073 AGAAGCTCAT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
10 6 0.20
11 24 0.80
ACGTcount: A:0.56, C:0.18, G:0.14, T:0.12
Consensus pattern (11 bp):
AGCTAAACAAA
Found at i:66144047 original size:53 final size:52
Alignment explanation
Indices: 66143978--66144129 Score: 182
Period size: 53 Copynumber: 2.9 Consensus size: 52
66143968 ACAGAAGCTT
66143978 AAAAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAGCTCGTAAGAGCTAAAC
1 AAAAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAGCTCGTAAGAGCT-AAC
* ** * *
66144031 AAAAGCTAAACAGAAGCTCATAAGAGCTAAACAAAAGCT-AAAAGAAGCTCAT
1 AAAAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAGCTCGTAAG-AGCTAAC
* * * *
66144083 AAGAGTTGAACAGAAGCTCATAAGAACTTAAA-AGAAGCTCGTAAGAG
1 AAAAGCTAAACAGAAGCTCATAAGAGC-TAAACAGAAGCTCGTAAGAG
66144130 TTGAACAGAA
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
52 35 0.42
53 49 0.58
ACGTcount: A:0.50, C:0.16, G:0.19, T:0.14
Consensus pattern (52 bp):
AAAAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAGCTCGTAAGAGCTAAC
Found at i:66145677 original size:22 final size:22
Alignment explanation
Indices: 66145638--66145716 Score: 97
Period size: 24 Copynumber: 3.5 Consensus size: 22
66145628 TAGCTCGTAT
66145638 GAGCTTACTGTTTCAGCTCAGA-A
1 GAGCTTACTG-TTCAGCTCA-ATA
66145661 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
*
66145683 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
*
66145707 GGGCTTACTG
1 GAGCTTACTG
66145717 GCCATGTCTC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.36
23 12 0.24
24 19 0.38
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:66146372 original size:41 final size:41
Alignment explanation
Indices: 66146315--66146397 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
66146305 TATAGATGTT
*
66146315 AAATAGATGAATTGTATATGTTTCTATATAGGTATATGGAC
1 AAATAGATGAATTGTATATGTTGCTATATAGGTATATGGAC
66146356 AAATAGATGAATTGTATATGTTGCTATATAGGTATATGGAC
1 AAATAGATGAATTGTATATGTTGCTATATAGGTATATGGAC
66146397 A
1 A
66146398 TGTAAATGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.37
Consensus pattern (41 bp):
AAATAGATGAATTGTATATGTTGCTATATAGGTATATGGAC
Found at i:66148485 original size:15 final size:15
Alignment explanation
Indices: 66148465--66148512 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
66148455 CGATGAATTT
66148465 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
66148480 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
66148495 ATTGAATTTATATTG
1 ATTGAATTTATATTG
66148510 ATT
1 ATT
66148513 ACATTATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:66156417 original size:28 final size:28
Alignment explanation
Indices: 66156377--66156432 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
66156367 TTAGAAGAGA
66156377 AAAGAATTCCTTGAATTGAAGCAGGGTC
1 AAAGAATTCCTTGAATTGAAGCAGGGTC
66156405 AAAGAATTCCTTGAATTGAAGCAGGGTC
1 AAAGAATTCCTTGAATTGAAGCAGGGTC
66156433 GTATGTCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (28 bp):
AAAGAATTCCTTGAATTGAAGCAGGGTC
Found at i:66161801 original size:22 final size:22
Alignment explanation
Indices: 66161776--66161832 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
66161766 AGCTCGCAAA
66161776 AGCTTATTGTTCAGCTCAATAG
1 AGCTTATTGTTCAGCTCAATAG
66161798 AGCTTACCGTT-TTCAGCTCAATAG
1 AGCTTA---TTGTTCAGCTCAATAG
*
66161822 AGCTTACTGTT
1 AGCTTATTGTT
66161833 ATCAACTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 8 0.27
24 19 0.63
25 2 0.07
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTTATTGTTCAGCTCAATAG
Found at i:66161841 original size:24 final size:24
Alignment explanation
Indices: 66161790--66161855 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
66161780 TATTGTTCAG
* * *
66161790 CTCAATAGAGCTTACCGTTTTCAG
1 CTCAATAGAGCTTACTGTTATCAA
66161814 CTCAATAGAGCTTACTGTTATCAA
1 CTCAATAGAGCTTACTGTTATCAA
66161838 CTC-ATGAAGAGCTTACTG
1 CTCAAT--AGAGCTTACTG
66161856 GCCATGTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.05
24 24 0.65
25 11 0.30
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
CTCAATAGAGCTTACTGTTATCAA
Found at i:66168067 original size:46 final size:45
Alignment explanation
Indices: 66168014--66168184 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 45
66168004 ATTGTTGGCT
*
66168014 AGTGTAAGACATGTCTAGGACATGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC-CATTATGAGAGCC
* *
66168060 AGTGTAAGACCATGTCTAGGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCCATT---ATGAGAGCC
* *
66168108 AGTCTAAGACATGTCTGGGACATGCATCGGCCTCA--AGTCGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC-CATTA-T-G-AGAGCC
*
66168154 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTAGGACATGCATCGGC
66168185 TATGAGATGA
Statistics
Matches: 106, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 50 0.47
47 28 0.26
48 21 0.20
49 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCCATTATGAGAGCC
Found at i:66168250 original size:47 final size:48
Alignment explanation
Indices: 66168056--66168279 Score: 198
Period size: 47 Copynumber: 4.8 Consensus size: 48
66168046 ACATTATGAG
* * *
66168056 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGAC-GA-G
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TTGAGACTCATA
* * * * * *
66168104 AGCTAGTCTAAGACATGTCTGGGACAT-GCATCGGCCTCA-AGTCGTA
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTTGAGACTCATA
*
66168150 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCTATGAGA-TGAT-
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCT-TGAGACTCATA
* * * *
66168196 GGTCAGTGTAAGATCATGTCTGGGACATGGCATCGACTTGATA-T-ATA
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTTGAGACTCATA
66168243 AGCCAGTGTAAGACCATG-CTTGGGACATGGCATCGGC
1 AGCCAGTGTAAGA-CATGTC-TGGGACATGGCATCGGC
66168280 ACCTTACCCA
Statistics
Matches: 145, Mismatches: 23, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 55 0.38
47 67 0.46
48 20 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTTGAGACTCATA
Found at i:66168267 original size:140 final size:141
Alignment explanation
Indices: 66168014--66168279 Score: 319
Period size: 140 Copynumber: 1.9 Consensus size: 141
66168004 ATTGTTGGCT
* *
66168014 AGTGTAAGACATGTCTAGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * *
66168079 GACATGGCATCGGCATTGAGACGAGAGCTAGTCTAAGACATGTCTGGGACAT-GCATCGGCCTCA
66 GACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCTGGGACATGGCATCGGCCTCA
66168143 AGTCGTAAGCC
131 AGTCGTAAGCC
* * * * *
66168154 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATG-GTCAGTGTAAGATCATGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCA-CATGATGA-GAGCCAGTGTAAGACCATGTCT
* * * *
66168217 GGGACATGGCATCGAC-TTGATA-TATAAGCCAGTGTAAGACCATG-CTTGGGACATGGCATCGG
64 AGGACATGGCATCGACATTGAGACGA-AAGCCAGTCTAAGA-CATGTC-TGGGACATGGCATCGG
66168279 C
126 C
66168280 ACCTTACCCA
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 78 0.74
141 10 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCTGGGACATGGCATCGGCCTCA
AGTCGTAAGCC
Found at i:66171871 original size:46 final size:46
Alignment explanation
Indices: 66171728--66171897 Score: 204
Period size: 47 Copynumber: 3.7 Consensus size: 46
66171718 ATTGTTGGCT
* * *
66171728 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAGA-GATGAGAGCC
*
66171774 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--GAGATGAGAGCC
* *
66171822 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GAGATGAGAGCC
66171868 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
66171898 AGCACCTTAC
Statistics
Matches: 109, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
46 35 0.32
47 46 0.42
48 27 0.25
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGAGAGCC
Found at i:66186964 original size:46 final size:47
Alignment explanation
Indices: 66186815--66187135 Score: 221
Period size: 47 Copynumber: 6.7 Consensus size: 47
66186805 GGGTTATTGT
* * * * *
66186815 GAGCTAGTGCAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCATGAAGA
* * *
66186861 GAGCCAGTGTAAGACCATGTCCGGAACATGGCATCGGCAT--TGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCATGA-A-GA
* *
66186909 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCATGAAGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCATGAAG-A
* *
66186956 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGAT-ATG-CGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-C---TCATGAAGA
* * *
66187005 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCCTC-ATGAAGA
* * * * * ** *
66187054 TAGTCAGTATAAGACCATGTCTAGGATATGGCATC-AACT--TGAGACA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCATGA-AGA
*
66187100 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
66187136 AGCATTACAC
Statistics
Matches: 217, Mismatches: 37, Indels: 41
0.74 0.13 0.14
Matches are distributed among these distances:
45 3 0.01
46 37 0.17
47 69 0.32
48 37 0.17
49 33 0.15
50 34 0.16
51 3 0.01
52 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCATGAAGA
Found at i:66186984 original size:94 final size:95
Alignment explanation
Indices: 66186815--66187135 Score: 348
Period size: 94 Copynumber: 3.4 Consensus size: 95
66186805 GGGTTATTGT
* * * *
66186815 GAGCTAGTGCAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGATGAGAGCCAGTGTAAGACCAT
* *
66186879 GTCCGGAACATGGCATCGGCATTGAGACGA
66 GTCTGGGACATGGCATCGGCATTGAGACGA
*
66186909 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCATGAAGTA-AGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGATG-AGAGCCAGTGTAAGACCA
* ** *
66186972 TGTCTGGGACATGGCATTGGCACGGATATGCGA
65 TGTCTGGGACATGGCATCGGCATTGAGA--CGA
* * *
66187005 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGATGATAGTCAGTATAAGAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGATGAGAGCCAGTGTAAGAC
* * **
66187069 CATGTCTAGGATATGGCATCAAC-TTGAGAC-A
63 CATGTCTGGGACATGGCATCGGCATTGAGACGA
* *
66187100 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
66187136 AGCATTACAC
Statistics
Matches: 193, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
94 78 0.40
95 2 0.01
96 49 0.25
97 17 0.09
98 12 0.06
99 35 0.18
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGATGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCATTGAGACGA
Found at i:66193727 original size:13 final size:13
Alignment explanation
Indices: 66193709--66193733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66193699 GTAAGTGATT
66193709 TTGATGATTTTTC
1 TTGATGATTTTTC
66193722 TTGATGATTTTT
1 TTGATGATTTTT
66193734 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:66194515 original size:47 final size:48
Alignment explanation
Indices: 66194447--66194729 Score: 238
Period size: 47 Copynumber: 5.9 Consensus size: 48
66194437 GCCACATTAT
* * *
66194447 GAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC
* * * *
66194495 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GACCTCGTGAA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGAC
* ** ** *
66194541 GTA-AGCTAGTGTATGACCATGTCTGGGACATGGCATTGGCACGGATATGC
1 G-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA--C
* * * **
66194591 AAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA-GAC
* * * *
66194640 AATAG-TCAGTGTAAGACCATGTCTAGGACATGGCATCAAC-TTGAGAC
1 GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC
* *
66194687 -ATGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCATT
1 GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
66194730 ACACCTTATG
Statistics
Matches: 187, Mismatches: 35, Indels: 26
0.75 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 24 0.13
47 63 0.34
48 27 0.14
49 37 0.20
50 34 0.18
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (48 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC
Found at i:66194550 original size:46 final size:47
Alignment explanation
Indices: 66194403--66194723 Score: 212
Period size: 47 Copynumber: 6.7 Consensus size: 47
66194393 GGGTTATTGT
* * * * * *
66194403 GAGCTAGTGCAAGA-CATGTCTGGGACATGTATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGTGAAGA
* * * * * *
66194449 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGTGAAGA
*
66194497 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGTGAAG-A
* * *
66194544 -AGCTAGTGTATGACCATGTCTGGGACATGGCATTGG-CACG-GATATGCAA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGTGA-A-G--A
* *
66194593 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACA-A
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGGCCTC-GTGA-AGA
* * ** *
66194642 TAG-TCAGTGTAAGACCATGTCTAGGACATGGCATC-AACT--TGAGACA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGTGA-AGA
* *
66194688 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
66194724 AGCATTACAC
Statistics
Matches: 219, Mismatches: 38, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
45 4 0.02
46 39 0.18
47 75 0.34
48 32 0.15
49 32 0.15
50 32 0.15
51 2 0.01
53 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGTGAAGA
Found at i:66194564 original size:94 final size:93
Alignment explanation
Indices: 66194403--66194723 Score: 296
Period size: 94 Copynumber: 3.4 Consensus size: 93
66194393 GGGTTATTGT
* * * * * * *
66194403 GAGCTAGTGCAAGA-CATGTCTGGGACATGTATCGGCCACATTATG-AGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGTA-AGCTAGTGTAAGACCA
66194466 TGTCTGGAACATGGCATCGGCATTGAGACGA
65 TGTCTGG-ACATGGCATCGGCATTGAGAC-A
* *
66194497 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTAAGCTAGTGTATGACCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGTAAGCTAGTGTAAGACCAT
* ** *
66194561 GTCTGGGACATGGCATTGGCACGGATATGCAA
66 GTCT-GGACATGGCATCGGCATTGAGA--C-A
*
66194593 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGACAAT-AG-TCAGTGTAAG
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGA-AGTAAGCT-AGTGTAAG
**
66194655 ACCATGTCTAGGACATGGCATCAAC-TTGAGACA
61 ACCATGTCT-GGACATGGCATCGGCATTGAGACA
* *
66194688 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
66194724 AGCATTACAC
Statistics
Matches: 189, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
94 73 0.39
95 4 0.02
96 48 0.25
97 17 0.09
98 12 0.06
99 33 0.17
100 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (93 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGTAAGCTAGTGTAAGACCAT
GTCTGGACATGGCATCGGCATTGAGACA
Found at i:66200802 original size:101 final size:101
Alignment explanation
Indices: 66200627--66200817 Score: 262
Period size: 101 Copynumber: 1.9 Consensus size: 101
66200617 GATGGATAAG
** *
66200627 ACCATGGTTGGACCATGGAAGTCCTTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
1 ACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATCAA
* * *
66200692 AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
66 AAGACCATAACTAGATTATGGCACTTTAAACGTAAA
* *
66200728 ACCATGGTTGGACTAT-GACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCAT-TCTGA-C
1 ACCATGGTTGGACCATGGA-AGTAATTATATGTAAGACCATAGCTGGGCTATGGCATAT-TAATC
66200790 AATAAGACCATAACTAGATTATGGCACT
64 AA-AAGACCATAACTAGATTATGGCACT
66200818 ACGAATGTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
100 5 0.06
101 74 0.94
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (101 bp):
ACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATCAA
AAGACCATAACTAGATTATGGCACTTTAAACGTAAA
Found at i:66200833 original size:101 final size:101
Alignment explanation
Indices: 66200623--66200835 Score: 261
Period size: 101 Copynumber: 2.1 Consensus size: 101
66200613 AATTGATGGA
**
66200623 TAAGACCATGGTTGGACCATGGAAGTCCTTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
* * * * **
66200688 TGAAAAGATCATAACTGGGTTATGGCACTTTAAACG
66 TCAAAAGACCATAACTAGATTATGGCACTACAAACG
* *
66200724 TAAAACCATGGTTGGACTAT-GACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCAT-TCT
1 TAAGACCATGGTTGGACCATGGA-AGTAATTATATGTAAGACCATAGCTGGGCTATGGCATAT-T
* * *
66200787 GA-CAATAAGACCATAACTAGATTATGGCACTACGAATG
64 AATCAA-AAGACCATAACTAGATTATGGCACTACAAACG
66200825 TAAGACCATGG
1 TAAGACCATGG
66200836 CAGGTCCATG
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
100 5 0.05
101 90 0.95
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
TCAAAAGACCATAACTAGATTATGGCACTACAAACG
Done.